BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4372
(50 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1
Length = 2026
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 2 ESFREGFECVFPLAQLSMFYPEELEYVFCGS 32
ESFREGFE VFPL L FYPEEL+ + CGS
Sbjct: 1873 ESFREGFESVFPLHHLQYFYPEELDQLLCGS 1903
>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1
SV=1
Length = 1992
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 2 ESFREGFECVFPLAQLSMFYPEELEYVFCGS 32
+SFR+GFE VFPL+ L FYPEEL+ + CGS
Sbjct: 1839 DSFRDGFESVFPLSHLQYFYPEELDQLLCGS 1869
>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2
Length = 1992
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 2 ESFREGFECVFPLAQLSMFYPEELEYVFCGS 32
+SFR+GFE VFPL+ L FYPEEL+ + CGS
Sbjct: 1839 DSFRDGFESVFPLSHLQYFYPEELDQLLCGS 1869
>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12
PE=2 SV=1
Length = 2025
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 2 ESFREGFECVFPLAQLSMFYPEELEYVFCGS 32
+SFR+GFE VFPL+ L FYPEEL+ + CGS
Sbjct: 1872 DSFRDGFESVFPLSHLQYFYPEELDQLLCGS 1902
>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12
PE=2 SV=1
Length = 2056
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 1 MESFREGFECVFPLAQLSMFYPEELEYVFCGS 32
++SFR+GFE VFPL L FYPEEL+ + CGS
Sbjct: 1902 LDSFRDGFESVFPLNHLQYFYPEELDQLLCGS 1933
>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1
SV=1
Length = 2025
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 2 ESFREGFECVFPLAQLSMFYPEELEYVFCGS 32
+SFR+GFE VFPL L FYPEEL+ + CGS
Sbjct: 1872 DSFRDGFESVFPLCHLQYFYPEELDQLLCGS 1902
>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1
SV=3
Length = 2610
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 1 MESFREGFECVFPLAQLSMFYPEELEYVFCGSDFTSCPQE 40
ME+FR+GF VFP+ +LS F EE++ + CG+ S E
Sbjct: 2462 MEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAE 2501
>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1
SV=1
Length = 1888
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1 MESFREGFECVFPLAQLSMFYPEELEYVFCG 31
+E+FR GF VF + L +F P EL+Y+ CG
Sbjct: 1725 IEAFRSGFNQVFDITSLQIFTPSELDYLLCG 1755
>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1
SV=2
Length = 2618
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 1 MESFR---EGFECVFPLAQLSMFYPEELEYVFCGSDFTSCPQE 40
ME+FR +GF VFP+ +LS F EE++ + CG+ S E
Sbjct: 2467 MEAFRGNVDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAE 2509
>sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1
SV=1
Length = 1502
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1 MESFREGFECVFPLAQLSMFYPEELEYVFCG 31
+E+FR GF VF + L +F EELE + CG
Sbjct: 1351 VEAFRSGFNQVFSIEHLRIFNEEELETMLCG 1381
>sp|Q9VVI3|NEDD4_DROME E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila melanogaster
GN=Nedd4 PE=1 SV=2
Length = 1007
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 1 MESFREGFECVFPLAQLSMFYPEELEYVFCG 31
M SF +GF + PL + +F ELE + CG
Sbjct: 856 MSSFLDGFGSIIPLNLIKIFDEHELELLMCG 886
>sp|Q9Y0H4|SUDX_DROME E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster
GN=Su(dx) PE=1 SV=1
Length = 949
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 2 ESFREGFECVFPLAQLSMFYPEELEYVFCG 31
++F EGF V PL L F ELE + CG
Sbjct: 801 KTFLEGFNEVVPLEWLKYFDERELELILCG 830
>sp|Q05086|UBE3A_HUMAN Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4
Length = 875
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 2 ESFREGFECVFPLAQLS-MFYPEELEYVFCGS---DFTSCPQET 41
++FR GF V + L +F PEE+E + CGS DF + + T
Sbjct: 731 KAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETT 774
>sp|O08759|UBE3A_MOUSE Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1
Length = 885
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 2 ESFREGFECVFPLAQLS-MFYPEELEYVFCGS---DFTSCPQET 41
++FR GF V + L +F PEE+E + CGS DF + + T
Sbjct: 741 KAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETT 784
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.142 0.486
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,696,781
Number of Sequences: 539616
Number of extensions: 477119
Number of successful extensions: 970
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 15
length of query: 50
length of database: 191,569,459
effective HSP length: 23
effective length of query: 27
effective length of database: 179,158,291
effective search space: 4837273857
effective search space used: 4837273857
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)