Query psy4372
Match_columns 50
No_of_seqs 113 out of 525
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 23:50:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nd7_A WW domain-containing pr 99.6 1.4E-15 4.9E-20 100.3 4.0 45 1-50 230-274 (374)
2 3h1d_A E3 ubiquitin-protein li 99.6 1.3E-15 4.6E-20 101.8 3.0 45 1-50 254-298 (405)
3 1zvd_A SMAD ubiquitination reg 99.5 2.3E-15 8E-20 99.5 3.7 45 1-50 230-274 (380)
4 2oni_A E3 ubiquitin-protein li 99.5 2.4E-15 8.2E-20 99.9 3.0 45 1-50 249-293 (392)
5 3olm_A E3 ubiquitin-protein li 99.5 5.3E-15 1.8E-19 99.2 3.0 45 1-50 280-324 (429)
6 1c4z_A E6AP, ubiquitin-protein 99.5 5.4E-15 1.9E-19 97.2 -0.3 45 1-50 213-258 (358)
7 3b09_A Peptidyl-prolyl CIS-tra 65.7 5 0.00017 21.4 2.4 28 2-30 55-82 (88)
8 3u5c_N S27A, YS15, 40S ribosom 63.4 4.7 0.00016 24.0 2.2 20 12-32 21-40 (151)
9 3j20_Q 30S ribosomal protein S 63.2 4.7 0.00016 24.1 2.2 19 12-31 21-39 (158)
10 2xzm_O RPS13E; ribosome, trans 61.6 5.3 0.00018 23.8 2.2 20 12-32 23-42 (153)
11 1v54_H AED, cytochrome C oxida 56.6 1.4 4.7E-05 23.8 -0.9 22 2-23 54-75 (85)
12 1q6h_A FKBP-type peptidyl-prol 40.6 19 0.00066 21.9 2.4 28 2-31 52-79 (224)
13 1g6u_A Domain swapped dimer; d 40.3 14 0.0005 17.6 1.4 12 19-30 16-27 (48)
14 2jg6_A DNA-3-methyladenine gly 29.2 35 0.0012 20.7 2.2 29 3-32 55-83 (186)
15 2ofk_A 3-methyladenine DNA gly 29.1 31 0.001 20.8 1.9 29 3-32 55-83 (183)
16 7cei_B Protein (colicin E7 imm 25.5 40 0.0014 20.9 2.0 33 1-33 122-156 (206)
17 1j2m_A CPI-17, 17-kDa PKC-pote 24.7 43 0.0015 18.5 1.8 26 22-47 36-61 (99)
18 2gs9_A Hypothetical protein TT 24.0 54 0.0019 18.1 2.3 18 14-31 154-171 (211)
19 3ic4_A Glutaredoxin (GRX-1); s 23.3 44 0.0015 16.2 1.6 18 14-31 75-92 (92)
20 3gwm_A Holo-[acyl-carrier-prot 23.1 43 0.0015 18.5 1.7 13 17-29 27-39 (129)
21 1fd9_A Protein (macrophage inf 22.9 43 0.0015 20.1 1.7 29 2-31 36-64 (213)
22 1x58_A Hypothetical protein 49 22.4 42 0.0014 16.9 1.4 17 18-34 9-25 (62)
23 3oe2_A Peptidyl-prolyl CIS-tra 21.3 20 0.00068 21.9 0.0 31 2-33 47-77 (219)
24 1h5p_A Nuclear autoantigen SP1 21.3 18 0.0006 19.9 -0.2 15 18-33 43-57 (95)
25 2jb0_B Colicin E7; hydrolase/i 21.1 38 0.0013 19.6 1.1 33 1-33 47-81 (131)
26 1lbj_A Motilin; A-helix, B-tur 20.9 63 0.0021 13.7 1.6 11 18-28 3-13 (26)
27 1wwu_A Hypothetical protein FL 20.8 39 0.0013 18.6 1.1 19 13-32 50-68 (99)
28 1ufn_A Putative nuclear protei 20.5 18 0.00063 19.8 -0.3 16 17-33 47-62 (94)
29 1fr2_B Colicin E9; protein-pro 20.0 41 0.0014 19.5 1.1 33 1-33 50-84 (134)
No 1
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=99.57 E-value=1.4e-15 Score=100.29 Aligned_cols=45 Identities=29% Similarity=0.519 Sum_probs=42.3
Q ss_pred ChHHHHHHhccCCcccccCCCHHHHHHHHhcCCCCCCCCCCHHHHHhhhC
Q psy4372 1 MESFREGFECVFPLAQLSMFYPEELEYVFCGSDFTSCPQETACTFFIHCQ 50 (50)
Q Consensus 1 ~~AF~~GF~~V~p~~~L~~F~~~ELe~LicG~~~~~~~~~d~~~L~~~~~ 50 (50)
++||++||++|+|.++|++|+|+||+.||||.+ ++|+++|++||+
T Consensus 230 ~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~-----~id~~dl~~~t~ 274 (374)
T 1nd7_A 230 TKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQ-----EVDLADWQRNTV 274 (374)
T ss_dssp HHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCC-----CCCHHHHHHTEE
T ss_pred HHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCC-----CCCHHHHhhheE
Confidence 479999999999999999999999999999998 699999999873
No 2
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=99.55 E-value=1.3e-15 Score=101.76 Aligned_cols=45 Identities=24% Similarity=0.386 Sum_probs=42.4
Q ss_pred ChHHHHHHhccCCcccccCCCHHHHHHHHhcCCCCCCCCCCHHHHHhhhC
Q psy4372 1 MESFREGFECVFPLAQLSMFYPEELEYVFCGSDFTSCPQETACTFFIHCQ 50 (50)
Q Consensus 1 ~~AF~~GF~~V~p~~~L~~F~~~ELe~LicG~~~~~~~~~d~~~L~~~~~ 50 (50)
++||++||++|+|.++|++|+|+||+.||||.+ +||+++|++||+
T Consensus 254 ~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~-----~id~~dl~~~t~ 298 (405)
T 3h1d_A 254 LAAFLEGFYEIIPKRLISIFTEQELELLISGLP-----TIDIDDLKSNTE 298 (405)
T ss_dssp HHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCC-----CCCHHHHHHTEE
T ss_pred HHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCC-----CCCHHHHHhhCc
Confidence 479999999999999999999999999999998 699999999873
No 3
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=99.55 Aligned_cols=45 Identities=24% Similarity=0.494 Sum_probs=42.3
Q ss_pred ChHHHHHHhccCCcccccCCCHHHHHHHHhcCCCCCCCCCCHHHHHhhhC
Q psy4372 1 MESFREGFECVFPLAQLSMFYPEELEYVFCGSDFTSCPQETACTFFIHCQ 50 (50)
Q Consensus 1 ~~AF~~GF~~V~p~~~L~~F~~~ELe~LicG~~~~~~~~~d~~~L~~~~~ 50 (50)
++||++||++|+|.++|++|+|+||+.||||.+ ++|+++|++||+
T Consensus 230 ~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~-----~id~~dl~~~t~ 274 (380)
T 1zvd_A 230 FLALQKGFNEVIPQHLLKTFDEKELELIICGLG-----KIDVNDWKVNTR 274 (380)
T ss_dssp HHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBS-----SCCHHHHHHTEE
T ss_pred HHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCC-----CCChhhhhhccE
Confidence 479999999999999999999999999999998 699999999873
No 4
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=99.54 E-value=2.4e-15 Score=99.89 Aligned_cols=45 Identities=29% Similarity=0.580 Sum_probs=42.4
Q ss_pred ChHHHHHHhccCCcccccCCCHHHHHHHHhcCCCCCCCCCCHHHHHhhhC
Q psy4372 1 MESFREGFECVFPLAQLSMFYPEELEYVFCGSDFTSCPQETACTFFIHCQ 50 (50)
Q Consensus 1 ~~AF~~GF~~V~p~~~L~~F~~~ELe~LicG~~~~~~~~~d~~~L~~~~~ 50 (50)
++||++||++|+|.++|++|+|+||+.||||.+ ++|+++|++||+
T Consensus 249 ~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~-----~id~~dl~~~t~ 293 (392)
T 2oni_A 249 MNAFLEGFTELLPIDLIKIFDENELELLMCGLG-----DVDVNDWRQHSI 293 (392)
T ss_dssp HHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCC-----CCCHHHHHHTCE
T ss_pred HHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCC-----CCCHHHHhcceE
Confidence 479999999999999999999999999999998 699999999873
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.51 E-value=5.3e-15 Score=99.21 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=42.3
Q ss_pred ChHHHHHHhccCCcccccCCCHHHHHHHHhcCCCCCCCCCCHHHHHhhhC
Q psy4372 1 MESFREGFECVFPLAQLSMFYPEELEYVFCGSDFTSCPQETACTFFIHCQ 50 (50)
Q Consensus 1 ~~AF~~GF~~V~p~~~L~~F~~~ELe~LicG~~~~~~~~~d~~~L~~~~~ 50 (50)
++||++||++|+|.++|++|+|+||+.||||.+ ++|+++|++||+
T Consensus 280 ~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~-----~id~~dl~~~t~ 324 (429)
T 3olm_A 280 FKAFMDGFNELIPEDLVTVFDERELELLIGGIA-----EIDIEDWKKHTD 324 (429)
T ss_dssp HHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBC-----CCCHHHHHHTEE
T ss_pred HHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCC-----CCCHHHHHHhcc
Confidence 479999999999999999999999999999998 699999999873
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=99.45 E-value=5.4e-15 Score=97.20 Aligned_cols=45 Identities=31% Similarity=0.547 Sum_probs=41.3
Q ss_pred ChHHHHHHhccCCccccc-CCCHHHHHHHHhcCCCCCCCCCCHHHHHhhhC
Q psy4372 1 MESFREGFECVFPLAQLS-MFYPEELEYVFCGSDFTSCPQETACTFFIHCQ 50 (50)
Q Consensus 1 ~~AF~~GF~~V~p~~~L~-~F~~~ELe~LicG~~~~~~~~~d~~~L~~~~~ 50 (50)
++||++||++|+|.++|+ +|+|+||+.||||.+ +||+++|++||+
T Consensus 213 ~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~-----~id~~~l~~~t~ 258 (358)
T 1c4z_A 213 FKAFRRGFHMVTNESPLKYLFRPEEIELLICGSR-----NLDFQALEETTE 258 (358)
T ss_dssp HHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBC-----CCCCTTTSTTCE
T ss_pred HHHHHHHHHHhcCcchhhcCCCHHHHHHHhhccc-----CCCHHHHHHHce
Confidence 479999999999999997 999999999999998 689999999874
No 7
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=65.74 E-value=5 Score=21.36 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=21.8
Q ss_pred hHHHHHHhccCCcccccCCCHHHHHHHHh
Q psy4372 2 ESFREGFECVFPLAQLSMFYPEELEYVFC 30 (50)
Q Consensus 2 ~AF~~GF~~V~p~~~L~~F~~~ELe~Lic 30 (50)
+||.+||.+.+.....+ .+++|++..+-
T Consensus 55 dav~~Gl~Dal~Gk~~~-ls~eei~~~l~ 82 (88)
T 3b09_A 55 PAVQAGLADAFAGKESA-VSMEELQVAFT 82 (88)
T ss_dssp HHHHHHHHHHHTTCCCS-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC-CCHHHHHHHHH
Confidence 68999999998776654 48899887663
No 8
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=63.36 E-value=4.7 Score=23.98 Aligned_cols=20 Identities=10% Similarity=-0.085 Sum_probs=16.8
Q ss_pred CCcccccCCCHHHHHHHHhcC
Q psy4372 12 FPLAQLSMFYPEELEYVFCGS 32 (50)
Q Consensus 12 ~p~~~L~~F~~~ELe~LicG~ 32 (50)
-|++|+++ +++|++.+||-.
T Consensus 21 ~~P~W~~~-~~eeVe~~I~kl 40 (151)
T 3u5c_N 21 NAPAWFKL-SSESVIEQIVKY 40 (151)
T ss_dssp SCCSSCCS-CHHHHHHHHHHH
T ss_pred CCCCCcCC-CHHHHHHHHHHH
Confidence 36899994 999999999964
No 9
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.15 E-value=4.7 Score=24.12 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=16.2
Q ss_pred CCcccccCCCHHHHHHHHhc
Q psy4372 12 FPLAQLSMFYPEELEYVFCG 31 (50)
Q Consensus 12 ~p~~~L~~F~~~ELe~LicG 31 (50)
-|++|+++ +++|++.+||-
T Consensus 21 ~~P~W~~~-~~eev~~~i~k 39 (158)
T 3j20_Q 21 APPIWVEY-TVEEIENLVVK 39 (158)
T ss_dssp SCCSSSCC-CHHHHHHHHHH
T ss_pred CCCCCcCC-CHHHHHHHHHH
Confidence 36799994 99999999985
No 10
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=61.55 E-value=5.3 Score=23.83 Aligned_cols=20 Identities=10% Similarity=-0.066 Sum_probs=16.9
Q ss_pred CCcccccCCCHHHHHHHHhcC
Q psy4372 12 FPLAQLSMFYPEELEYVFCGS 32 (50)
Q Consensus 12 ~p~~~L~~F~~~ELe~LicG~ 32 (50)
-|++|++ .+++|++.+||-.
T Consensus 23 ~~P~W~~-~~~eeVe~~I~kl 42 (153)
T 2xzm_O 23 RSPKWLH-MTPSTVVDLSVKL 42 (153)
T ss_dssp SCCSSCC-CCHHHHHHHHHHH
T ss_pred CCCcccc-CCHHHHHHHHHHH
Confidence 4789998 5999999999854
No 11
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=56.56 E-value=1.4 Score=23.76 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=18.8
Q ss_pred hHHHHHHhccCCcccccCCCHH
Q psy4372 2 ESFREGFECVFPLAQLSMFYPE 23 (50)
Q Consensus 2 ~AF~~GF~~V~p~~~L~~F~~~ 23 (50)
..|+..|.+.+|.+|++.|+..
T Consensus 54 ~~~~~~y~slCP~sWVe~wdeq 75 (85)
T 1v54_H 54 EWYRRVYKSLCPISWVSTWDDR 75 (85)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHcChHHHHHHHHHH
Confidence 3588999999999999988764
No 12
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=40.60 E-value=19 Score=21.90 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=22.7
Q ss_pred hHHHHHHhccCCcccccCCCHHHHHHHHhc
Q psy4372 2 ESFREGFECVFPLAQLSMFYPEELEYVFCG 31 (50)
Q Consensus 2 ~AF~~GF~~V~p~~~L~~F~~~ELe~LicG 31 (50)
++|.+||.+.+..... ++++|++..+--
T Consensus 52 ~~~~~G~~d~~~~~~~--~~~~~~~~~~~~ 79 (224)
T 1q6h_A 52 DQLIAGVQDAFADKSK--LSDQEIEQTLQA 79 (224)
T ss_dssp HHHHHHHHHHHTTCCS--SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC--CCHHHHHHHHHH
Confidence 5899999999877654 899999887743
No 13
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=40.33 E-value=14 Score=17.59 Aligned_cols=12 Identities=42% Similarity=0.451 Sum_probs=9.2
Q ss_pred CCCHHHHHHHHh
Q psy4372 19 MFYPEELEYVFC 30 (50)
Q Consensus 19 ~F~~~ELe~Lic 30 (50)
-|+|+||..|=+
T Consensus 16 gfspeelaales 27 (48)
T 1g6u_A 16 GFSPEELAALES 27 (48)
T ss_dssp TCSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 699999887643
No 14
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=29.15 E-value=35 Score=20.67 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=21.1
Q ss_pred HHHHHHhccCCcccccCCCHHHHHHHHhcC
Q psy4372 3 SFREGFECVFPLAQLSMFYPEELEYVFCGS 32 (50)
Q Consensus 3 AF~~GF~~V~p~~~L~~F~~~ELe~LicG~ 32 (50)
+|++-|... .++.+..|++++++.|+.-.
T Consensus 55 ~fR~AF~~F-D~~~VA~~~e~dve~Ll~d~ 83 (186)
T 2jg6_A 55 AYEEAFYDF-EPEKVAQMTAQDIDRLMTFP 83 (186)
T ss_dssp HHHHHTGGG-CHHHHTTCCHHHHHHHTTCT
T ss_pred HHHHHHcCC-CHHHHhCCCHHHHHHHhcCc
Confidence 455555554 67788899999999987543
No 15
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=29.13 E-value=31 Score=20.84 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=21.0
Q ss_pred HHHHHHhccCCcccccCCCHHHHHHHHhcC
Q psy4372 3 SFREGFECVFPLAQLSMFYPEELEYVFCGS 32 (50)
Q Consensus 3 AF~~GF~~V~p~~~L~~F~~~ELe~LicG~ 32 (50)
+|++-|... .++.+..|++++++.|+.-.
T Consensus 55 ~fr~AF~~F-d~~~VA~~~e~~ve~Ll~d~ 83 (183)
T 2ofk_A 55 NYRACFHQF-DPIRIAAMQEEDVERLLQNT 83 (183)
T ss_dssp HHHHHTGGG-CHHHHHTCCHHHHHHHTTCT
T ss_pred HHHHHHcCC-CHHHHcCCCHHHHHHHhcCC
Confidence 455555554 67788899999999988543
No 16
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=25.54 E-value=40 Score=20.91 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=28.6
Q ss_pred ChHHHHHHhccCC--cccccCCCHHHHHHHHhcCC
Q psy4372 1 MESFREGFECVFP--LAQLSMFYPEELEYVFCGSD 33 (50)
Q Consensus 1 ~~AF~~GF~~V~p--~~~L~~F~~~ELe~LicG~~ 33 (50)
|.+|++.|..-|. ++.++=|++.-+..|--|..
T Consensus 122 FD~FR~AFWkeVa~DPeLskQF~~~N~~~Mk~G~A 156 (206)
T 7cei_B 122 FDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKA 156 (206)
T ss_dssp HHHHHHHHHHHHTTCTTTGGGSCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHhHHHHHHHHCCCC
Confidence 4789999998885 77789999999999999865
No 17
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=24.71 E-value=43 Score=18.48 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHh
Q psy4372 22 PEELEYVFCGSDFTSCPQETACTFFI 47 (50)
Q Consensus 22 ~~ELe~LicG~~~~~~~~~d~~~L~~ 47 (50)
.+.|+.|..|..+...+.+|+++|..
T Consensus 36 ~~qL~eLy~~~e~e~p~eIDiDeLLD 61 (99)
T 1j2m_A 36 DGRLEELYRGREADMPDEVNIDELLE 61 (99)
T ss_dssp HHHHHHSCTTSSCSCCSSCCSHHHHC
T ss_pred HHHHHHHhcCccccCCcccCHHHHhc
Confidence 46788888886542223799999865
No 18
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=24.02 E-value=54 Score=18.09 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=15.5
Q ss_pred cccccCCCHHHHHHHHhc
Q psy4372 14 LAQLSMFYPEELEYVFCG 31 (50)
Q Consensus 14 ~~~L~~F~~~ELe~LicG 31 (50)
....+.|+++||+.++.|
T Consensus 154 ~~~~~~~s~~~l~~~l~G 171 (211)
T 2gs9_A 154 WAQARFLAREDLKALLGP 171 (211)
T ss_dssp GGGCCCCCHHHHHHHHCS
T ss_pred ccccccCCHHHHHHHhcC
Confidence 356789999999999987
No 19
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=23.29 E-value=44 Score=16.16 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=12.5
Q ss_pred cccccCCCHHHHHHHHhc
Q psy4372 14 LAQLSMFYPEELEYVFCG 31 (50)
Q Consensus 14 ~~~L~~F~~~ELe~LicG 31 (50)
...+.-|++++|+.++.|
T Consensus 75 g~~i~G~~~~~l~~~l~~ 92 (92)
T 3ic4_A 75 DKHVLGYNEEKLKELIRG 92 (92)
T ss_dssp TEEEESCCHHHHHHHHHC
T ss_pred CEEEeCCCHHHHHHHhcC
Confidence 344556888888887754
No 20
>3gwm_A Holo-[acyl-carrier-protein] synthase; HOMO-trimer, 9-stand pseudo beta barrel protein, cytoplasm, fatty acid biosynthesis; 1.70A {Mycobacterium smegmatis} PDB: 3h7q_A* 3ne3_B 3ne1_A 3hqj_A* 4hc6_A
Probab=23.14 E-value=43 Score=18.46 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=10.9
Q ss_pred ccCCCHHHHHHHH
Q psy4372 17 LSMFYPEELEYVF 29 (50)
Q Consensus 17 L~~F~~~ELe~Li 29 (50)
+++|+|.|++..-
T Consensus 27 ~r~ft~~E~~~~~ 39 (129)
T 3gwm_A 27 AETFTPGERRDAA 39 (129)
T ss_dssp HTTSCHHHHHHHT
T ss_pred HhhCCHHHHHHHH
Confidence 4899999998754
No 21
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=22.94 E-value=43 Score=20.13 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=21.5
Q ss_pred hHHHHHHhccCCcccccCCCHHHHHHHHhc
Q psy4372 2 ESFREGFECVFPLAQLSMFYPEELEYVFCG 31 (50)
Q Consensus 2 ~AF~~GF~~V~p~~~L~~F~~~ELe~LicG 31 (50)
++|.+||.+.+.....+ ++++|++..+--
T Consensus 36 ~~~~~G~~d~~~~~~~~-~~~~~~~~~~~~ 64 (213)
T 1fd9_A 36 EAMAKGMQDAMSGAQLA-LTEQQMKDVLNK 64 (213)
T ss_dssp HHHHHHHHHHHHTCCCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC-CCHHHHHHHHHH
Confidence 57899999988665443 589998877643
No 22
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=22.37 E-value=42 Score=16.95 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=14.3
Q ss_pred cCCCHHHHHHHHhcCCC
Q psy4372 18 SMFYPEELEYVFCGSDF 34 (50)
Q Consensus 18 ~~F~~~ELe~LicG~~~ 34 (50)
+-|+++|.+.|+-|...
T Consensus 9 ~~WT~EE~~~L~~gV~k 25 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKT 25 (62)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 46899999999988764
No 23
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=21.30 E-value=20 Score=21.89 Aligned_cols=31 Identities=13% Similarity=0.341 Sum_probs=0.0
Q ss_pred hHHHHHHhccCCcccccCCCHHHHHHHHhcCC
Q psy4372 2 ESFREGFECVFPLAQLSMFYPEELEYVFCGSD 33 (50)
Q Consensus 2 ~AF~~GF~~V~p~~~L~~F~~~ELe~LicG~~ 33 (50)
++|.+||.+.+.....+ ++++|++..+---.
T Consensus 47 ~~~~~G~~d~~~g~~~~-~~~~e~~~~~~~~~ 77 (219)
T 3oe2_A 47 KALVDGLKQAYQGKPLA-LKQERIDQILREHD 77 (219)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHH
Confidence 68899999998776544 58888887765543
No 24
>1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1
Probab=21.25 E-value=18 Score=19.92 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=11.4
Q ss_pred cCCCHHHHHHHHhcCC
Q psy4372 18 SMFYPEELEYVFCGSD 33 (50)
Q Consensus 18 ~~F~~~ELe~LicG~~ 33 (50)
.+|+|.|.+. .+|..
T Consensus 43 ~w~TP~EFe~-~~g~~ 57 (95)
T 1h5p_A 43 KWFTPREFEI-EGDRG 57 (95)
T ss_dssp EEECHHHHHH-HHTCS
T ss_pred eEEChHHhhh-hcCcc
Confidence 6899999995 55544
No 25
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=21.09 E-value=38 Score=19.57 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=27.8
Q ss_pred ChHHHHHHhccC--CcccccCCCHHHHHHHHhcCC
Q psy4372 1 MESFREGFECVF--PLAQLSMFYPEELEYVFCGSD 33 (50)
Q Consensus 1 ~~AF~~GF~~V~--p~~~L~~F~~~ELe~LicG~~ 33 (50)
|++|++.|..-+ .++.++=|++.-+..|--|..
T Consensus 47 Fd~FR~afW~eVs~DpeL~~QF~~~N~~rmk~G~a 81 (131)
T 2jb0_B 47 FDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHCCCC
Confidence 468999998665 578889999999999998865
No 26
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=20.92 E-value=63 Score=13.68 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=8.7
Q ss_pred cCCCHHHHHHH
Q psy4372 18 SMFYPEELEYV 28 (50)
Q Consensus 18 ~~F~~~ELe~L 28 (50)
-+|+-.||+.+
T Consensus 3 PiFt~selqr~ 13 (26)
T 1lbj_A 3 PIFTYGELQRM 13 (26)
T ss_dssp CTTCHHHHHHH
T ss_pred ceeeHHHHHHH
Confidence 47999999865
No 27
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=20.75 E-value=39 Score=18.62 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=11.6
Q ss_pred CcccccCCCHHHHHHHHhcC
Q psy4372 13 PLAQLSMFYPEELEYVFCGS 32 (50)
Q Consensus 13 p~~~L~~F~~~ELe~LicG~ 32 (50)
....|--.+++||+ .|||.
T Consensus 50 tGaqLf~Ltk~eL~-~vCg~ 68 (99)
T 1wwu_A 50 TGPQLFSLNKEELK-KVCGE 68 (99)
T ss_dssp CHHHHHTCCHHHHH-HHHTT
T ss_pred CHHHHHcCCHHHHH-HHCcc
Confidence 33334344888888 47883
No 28
>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1
Probab=20.53 E-value=18 Score=19.79 Aligned_cols=16 Identities=13% Similarity=-0.076 Sum_probs=11.7
Q ss_pred ccCCCHHHHHHHHhcCC
Q psy4372 17 LSMFYPEELEYVFCGSD 33 (50)
Q Consensus 17 L~~F~~~ELe~LicG~~ 33 (50)
=+.|+|.|.+. .+|..
T Consensus 47 g~w~TP~EFe~-~~g~~ 62 (94)
T 1ufn_A 47 GDWLTVKEFLN-EGGRA 62 (94)
T ss_dssp CCEECHHHHHH-HHTCT
T ss_pred CcEEChHHhhh-hcCcc
Confidence 36899999995 55544
No 29
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=20.04 E-value=41 Score=19.49 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=27.8
Q ss_pred ChHHHHHHhccC--CcccccCCCHHHHHHHHhcCC
Q psy4372 1 MESFREGFECVF--PLAQLSMFYPEELEYVFCGSD 33 (50)
Q Consensus 1 ~~AF~~GF~~V~--p~~~L~~F~~~ELe~LicG~~ 33 (50)
|++|++.|..-+ .++.++=|++.-+..|--|..
T Consensus 50 Fd~FR~afW~eVs~DpeL~~QF~~~N~~rmk~G~a 84 (134)
T 1fr2_B 50 FDDFRKAVWEEVSKDPELSKNLNPSNKSSVSKGYS 84 (134)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHhCHHHHHHHHCCCC
Confidence 468999999665 578889999999999998865
Done!