RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4372
         (50 letters)



>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 374

 Score = 34.7 bits (79), Expect = 1e-04
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 1   MESFREGFECVFPLAQLSMFYPEELEYVFCGSDFTSCPQETACTFFIHC 49
            ++F +GF  V PL  L  F  +ELE + CG            T + H 
Sbjct: 230 TKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHY 278


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 31.6 bits (71), Expect = 0.002
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 1   MESFREGFECVFPL-AQLSMFYPEELEYVFCGSDFTSCPQETACTFFIH 48
            ++FR GF  V        +F PEE+E + CGS           T +  
Sbjct: 211 FKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDG 259


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.142    0.486 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 200,856
Number of extensions: 6197
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 4
Length of query: 50
Length of database: 2,407,596
Length adjustment: 22
Effective length of query: 28
Effective length of database: 2,105,536
Effective search space: 58955008
Effective search space used: 58955008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.4 bits)