Query psy4375
Match_columns 62
No_of_seqs 105 out of 322
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 23:56:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o7d_A Lysosomal alpha-mannosi 99.8 1.6E-19 5.3E-24 128.6 4.4 57 2-58 80-141 (298)
2 3bvx_A Alpha-mannosidase 2; fa 99.7 1.3E-18 4.3E-23 138.7 3.8 57 2-58 139-198 (1045)
3 3lvt_A Glycosyl hydrolase, fam 99.6 1.4E-15 4.9E-20 119.5 4.3 55 3-58 66-122 (899)
4 2wyh_A Alpha-mannosidase; hydr 99.5 2.4E-15 8.4E-20 117.9 4.2 54 3-58 85-141 (923)
5 1k1x_A 4-alpha-glucanotransfer 97.7 4.9E-05 1.7E-09 58.9 5.8 54 5-58 62-117 (659)
6 3p0b_A TT1467 protein; glycosi 96.2 0.0055 1.9E-07 47.3 4.8 52 7-58 143-198 (540)
7 3n98_A Alpha-amylase, GH57 fam 96.1 0.0072 2.5E-07 46.8 4.9 52 7-58 122-177 (562)
8 2b5d_X Alpha-amylase; (beta/al 95.8 0.012 4.3E-07 44.4 5.0 49 10-58 126-179 (528)
9 2cc0_A Acetyl-xylan esterase; 89.1 0.77 2.6E-05 29.2 4.8 53 9-62 46-102 (195)
10 2c71_A Glycoside hydrolase, fa 87.8 0.81 2.8E-05 29.8 4.4 51 11-62 50-104 (216)
11 2iw0_A Chitin deacetylase; hyd 84.8 1.5 5.1E-05 29.3 4.6 55 7-62 86-144 (254)
12 1ldd_A APC2WHB, anaphase promo 83.1 0.75 2.6E-05 27.1 2.2 22 6-27 48-69 (74)
13 2y8u_A Chitin deacetylase; hyd 82.2 2.4 8.1E-05 28.0 4.7 53 9-62 74-130 (230)
14 2pjp_A Selenocysteine-specific 79.4 4.4 0.00015 24.2 4.9 44 6-49 35-78 (121)
15 2j13_A Polysaccharide deacetyl 77.5 3.5 0.00012 27.5 4.3 53 9-62 97-154 (247)
16 3cl6_A PUUE allantoinase; URIC 77.2 4.1 0.00014 27.7 4.7 49 9-58 110-161 (308)
17 2vyo_A ECU11_0510, chitooligos 75.7 4 0.00014 27.1 4.3 51 11-62 72-128 (254)
18 1ucr_A Protein DSVD; dissimila 75.5 3 0.0001 25.1 3.2 23 5-27 36-58 (78)
19 2og0_A Excisionase; protein-DN 73.8 3.7 0.00013 22.4 3.1 28 8-35 17-48 (52)
20 2b0l_A GTP-sensing transcripti 70.8 9.3 0.00032 22.4 4.7 27 6-32 58-87 (102)
21 3myr_B Nickel-dependent hydrog 69.4 2.2 7.5E-05 32.8 2.0 43 7-49 150-202 (561)
22 1r7j_A Conserved hypothetical 69.3 11 0.00038 21.8 4.7 33 6-38 35-67 (95)
23 1ny1_A Probable polysaccharide 66.7 9 0.00031 25.2 4.3 53 9-62 85-142 (240)
24 2c1i_A Peptidoglycan glcnac de 66.4 8.8 0.0003 28.1 4.6 53 9-62 278-334 (431)
25 3ayx_A Membrane-bound hydrogen 66.1 2.4 8.2E-05 32.6 1.6 43 7-49 166-218 (596)
26 1pm6_A Excisionase; antiparall 64.8 5.9 0.0002 22.9 2.8 28 8-35 17-48 (72)
27 3rxz_A Polysaccharide deacetyl 62.1 14 0.00048 24.8 4.7 49 9-58 91-142 (300)
28 3uqy_L Hydrogenase-1 large cha 59.5 3 0.0001 32.3 1.1 38 7-44 165-212 (582)
29 2jro_A Uncharacterized protein 57.3 5.9 0.0002 23.7 1.9 28 18-45 29-56 (78)
30 2w3z_A Putative deacetylase; P 57.2 16 0.00055 25.2 4.4 54 8-62 149-213 (311)
31 3qbu_A Putative uncharacterize 57.1 18 0.0006 24.8 4.6 53 9-62 103-159 (326)
32 1lva_A Selenocysteine-specific 56.9 15 0.0005 24.6 4.0 43 6-49 172-214 (258)
33 3ipz_A Monothiol glutaredoxin- 55.7 13 0.00044 21.4 3.2 25 3-27 2-26 (109)
34 2v7f_A RPS19, RPS19E SSU ribos 55.0 22 0.00074 22.7 4.5 43 6-48 96-139 (150)
35 3rhb_A ATGRXC5, glutaredoxin-C 53.7 11 0.00038 21.3 2.7 30 1-30 1-30 (113)
36 2y75_A HTH-type transcriptiona 53.3 27 0.00091 20.4 4.4 43 6-49 41-87 (129)
37 1xn7_A Hypothetical protein YH 50.8 17 0.00058 20.7 3.2 27 4-30 29-57 (78)
38 3c7j_A Transcriptional regulat 49.9 26 0.00087 22.9 4.3 27 6-32 64-91 (237)
39 1qbj_A Protein (double-strande 49.7 20 0.00069 20.5 3.4 27 6-32 42-71 (81)
40 3h8q_A Thioredoxin reductase 3 47.9 21 0.00072 20.5 3.3 26 5-30 3-28 (114)
41 1ylf_A RRF2 family protein; st 47.6 26 0.00088 21.3 3.8 42 6-48 45-89 (149)
42 2x4h_A Hypothetical protein SS 46.5 37 0.0013 19.5 4.2 37 6-42 46-82 (139)
43 3ukw_C Bimax1 peptide; arm rep 46.5 6.1 0.00021 19.4 0.6 7 55-61 5-11 (28)
44 1wui_L Periplasmic [NIFE] hydr 46.0 7.6 0.00026 29.2 1.4 22 7-28 151-172 (534)
45 3s6o_A Polysaccharide deacetyl 45.3 36 0.0012 23.4 4.7 49 9-58 115-166 (321)
46 3gx8_A Monothiol glutaredoxin- 45.2 24 0.00083 20.9 3.3 23 5-27 2-24 (121)
47 1hst_A Histone H5; chromosomal 44.0 19 0.00065 21.2 2.7 21 6-26 48-68 (90)
48 2ns0_A Hypothetical protein; r 42.1 29 0.00098 20.8 3.3 25 6-30 44-68 (85)
49 3kfw_X Uncharacterized protein 41.6 40 0.0014 23.0 4.3 41 4-44 36-76 (247)
50 3c1r_A Glutaredoxin-1; oxidize 40.4 33 0.0011 19.8 3.4 28 4-31 10-37 (118)
51 2h09_A Transcriptional regulat 40.3 56 0.0019 19.2 4.5 37 6-42 69-106 (155)
52 1qgp_A Protein (double strande 39.5 40 0.0014 18.7 3.5 25 6-30 46-73 (77)
53 1q1h_A TFE, transcription fact 38.3 30 0.001 19.5 2.9 27 5-31 47-78 (110)
54 3htu_A Vacuolar protein-sortin 38.1 28 0.00094 20.4 2.7 20 7-26 51-70 (79)
55 2dmj_A Poly (ADP-ribose) polym 37.7 25 0.00087 21.1 2.6 20 2-21 82-101 (106)
56 2nx2_A Hypothetical protein YP 37.0 27 0.00092 22.6 2.8 23 7-29 31-53 (181)
57 2ija_A Arylamine N-acetyltrans 35.7 19 0.00064 24.8 2.0 31 8-45 57-87 (295)
58 3j21_Q PFEL19, 50S ribosomal p 35.5 8.5 0.00029 25.4 0.2 21 3-23 32-52 (150)
59 3t8r_A Staphylococcus aureus C 35.2 55 0.0019 19.9 3.9 43 6-49 43-89 (143)
60 1uhm_A Histone H1, histone HHO 34.4 23 0.00078 20.0 1.9 22 5-26 47-68 (78)
61 1xd7_A YWNA; structural genomi 33.6 43 0.0015 20.2 3.2 42 7-49 39-83 (145)
62 2yan_A Glutaredoxin-3; oxidore 32.3 51 0.0017 18.3 3.2 23 4-26 2-24 (105)
63 1uss_A Histone H1; DNA binding 32.3 22 0.00074 20.7 1.6 20 7-26 53-72 (88)
64 3ctg_A Glutaredoxin-2; reduced 31.5 51 0.0017 19.5 3.3 27 4-30 22-48 (129)
65 3cuo_A Uncharacterized HTH-typ 31.0 64 0.0022 17.2 4.8 40 6-45 53-96 (99)
66 2oct_A Cystatin B; stefin, amy 30.9 26 0.00089 20.5 1.8 26 24-49 2-27 (98)
67 3neu_A LIN1836 protein; struct 30.6 61 0.0021 19.1 3.5 28 6-33 52-80 (125)
68 4esj_A Type-2 restriction enzy 30.4 36 0.0012 24.3 2.7 23 5-27 230-252 (257)
69 1yqw_Q Periplasmic [NIFE] hydr 30.3 33 0.0011 25.8 2.7 22 7-28 162-184 (549)
70 3vus_A Poly-beta-1,6-N-acetyl- 30.2 96 0.0033 20.6 4.8 24 9-32 126-149 (268)
71 1u02_A Trehalose-6-phosphate p 29.6 50 0.0017 20.9 3.1 23 4-26 24-46 (239)
72 2rpa_A Katanin P60 ATPase-cont 29.1 20 0.00068 20.9 1.0 17 30-46 27-43 (78)
73 1w5r_A Arylamine N-acetyltrans 29.0 25 0.00084 24.1 1.6 32 7-45 56-87 (278)
74 2dk8_A DNA-directed RNA polyme 28.4 63 0.0021 18.9 3.2 20 7-26 46-65 (81)
75 2q9q_C DNA replication complex 28.4 12 0.00042 24.4 0.0 19 8-26 178-196 (196)
76 1vq8_P 50S ribosomal protein L 28.4 11 0.00036 24.9 -0.3 20 4-23 33-52 (149)
77 3sxy_A Transcriptional regulat 28.1 96 0.0033 19.4 4.3 27 6-32 50-77 (218)
78 2vfb_A Arylamine N-acetyltrans 28.1 26 0.00089 24.0 1.6 32 7-45 53-84 (280)
79 2jt1_A PEFI protein; solution 27.9 64 0.0022 18.2 3.1 23 5-27 38-60 (77)
80 3lwf_A LIN1550 protein, putati 27.8 77 0.0026 19.9 3.8 43 6-49 59-105 (159)
81 2bsz_A Arylamine N-acetyltrans 27.6 27 0.00091 23.9 1.6 31 8-45 57-87 (278)
82 1e3d_B [NIFE] hydrogenase larg 27.5 24 0.00081 26.7 1.4 43 7-49 159-213 (542)
83 2rqp_A Heterochromatin protein 27.3 14 0.00047 21.4 0.1 22 5-26 51-72 (88)
84 3by6_A Predicted transcription 26.8 77 0.0026 18.8 3.5 27 6-32 50-77 (126)
85 1ust_A Histone H1; DNA binding 26.5 40 0.0014 19.8 2.1 21 5-25 50-70 (93)
86 3d9w_A Putative acetyltransfer 26.4 17 0.00059 25.1 0.5 31 8-45 66-96 (293)
87 3od8_A Poly [ADP-ribose] polym 26.2 41 0.0014 20.9 2.2 19 2-20 95-113 (116)
88 4a17_O RPL19, 60S ribosomal pr 26.0 12 0.00041 25.5 -0.4 20 4-23 33-52 (185)
89 2vdj_A Homoserine O-succinyltr 25.8 34 0.0012 24.0 1.9 34 23-56 104-142 (301)
90 2h2w_A Homoserine O-succinyltr 25.3 39 0.0013 23.9 2.2 34 23-56 116-154 (312)
91 3jyw_P 60S ribosomal protein L 25.2 11 0.00038 25.4 -0.7 20 4-23 32-51 (176)
92 1on2_A Transcriptional regulat 25.1 1E+02 0.0035 17.6 4.2 37 6-42 37-74 (142)
93 3tqn_A Transcriptional regulat 25.0 1E+02 0.0036 17.6 4.5 34 6-39 48-82 (113)
94 1vio_A Ribosomal small subunit 24.8 45 0.0016 21.8 2.3 21 8-29 16-36 (243)
95 2ek5_A Predicted transcription 24.8 75 0.0026 19.0 3.2 28 6-33 43-71 (129)
96 2e9x_D GINS complex subunit 4; 24.7 42 0.0014 22.3 2.2 16 9-24 208-223 (223)
97 3u5e_R 60S ribosomal protein L 24.6 15 0.0005 25.1 -0.1 21 3-23 32-52 (189)
98 2lso_A Histone H1X; structural 29.8 16 0.00056 21.1 0.0 22 5-26 46-67 (83)
99 3cuq_C Vacuolar protein-sortin 23.9 48 0.0016 21.9 2.3 20 7-26 148-167 (176)
100 2hs5_A Putative transcriptiona 23.7 1.3E+02 0.0045 19.3 4.4 27 6-32 66-93 (239)
101 4a1a_O RPL19, 60S ribosomal pr 23.6 14 0.00048 25.1 -0.4 20 4-23 33-52 (185)
102 3iz5_T 60S ribosomal protein L 23.6 14 0.00048 25.6 -0.4 20 4-23 33-52 (209)
103 2di3_A Bacterial regulatory pr 23.1 88 0.003 19.9 3.4 27 6-32 43-74 (239)
104 1dm9_A Hypothetical 15.5 KD pr 22.5 57 0.0019 20.0 2.3 21 8-29 23-43 (133)
105 1gt0_D Transcription factor SO 22.3 49 0.0017 17.9 1.8 32 30-61 44-78 (80)
106 2vxg_A LD41624, GE-1, CG6181-P 22.2 34 0.0012 21.6 1.3 23 7-29 2-24 (139)
107 3pzy_A MOG; ssgcid, seattle st 21.9 1.1E+02 0.0036 19.2 3.6 28 6-33 53-81 (164)
108 1t0b_A THUA-like protein; treh 21.8 60 0.002 21.7 2.5 18 2-19 80-97 (252)
109 1e2t_A NAT, N-hydroxyarylamine 21.2 28 0.00094 23.9 0.7 30 9-45 57-86 (284)
110 3ic7_A Putative transcriptiona 21.2 1.2E+02 0.0041 17.8 3.6 30 6-35 50-80 (126)
111 3i0u_A Phosphothreonine lyase 21.0 48 0.0016 23.1 1.9 35 28-62 135-176 (218)
112 1v9x_A Poly (ADP-ribose) polym 20.7 66 0.0022 19.7 2.3 19 2-20 76-94 (114)
113 3ojc_A Putative aspartate/glut 20.2 42 0.0014 22.0 1.4 20 30-49 11-30 (231)
114 3kbq_A Protein TA0487; structu 20.2 1E+02 0.0034 19.9 3.2 27 6-32 50-76 (172)
115 2kfs_A Conserved hypothetical 20.1 51 0.0017 21.4 1.8 40 9-48 45-93 (148)
116 2zkr_p 60S ribosomal protein L 20.1 18 0.00063 24.8 -0.4 20 4-23 33-52 (196)
No 1
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1
Probab=99.77 E-value=1.6e-19 Score=128.62 Aligned_cols=57 Identities=39% Similarity=0.637 Sum_probs=53.5
Q ss_pred CcCChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccc--cC
Q psy4375 2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQ--SS 58 (62)
Q Consensus 2 d~~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~--p~ 58 (62)
++++++.++.||+||++||||||+|||||+|||+++++|+|+||+.|| .++||+. |+
T Consensus 80 ~~~~Pe~~~~vk~lV~~Grle~vgG~wve~D~~~~~~eslirQl~~G~~~~~~~fG~~~~~~ 141 (298)
T 1o7d_A 80 RQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPR 141 (298)
T ss_dssp HTSCHHHHHHHHHHHHTTSEEESSCSSSCBCSSSCCHHHHHHHHHHHHHHHHHHHGGGGCCS
T ss_pred HhcCHHHHHHHHHHHHCCCEEEECceeeccccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 468899999999999999999999999999999999999999999999 5689997 64
No 2
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...
Probab=99.73 E-value=1.3e-18 Score=138.72 Aligned_cols=57 Identities=37% Similarity=0.542 Sum_probs=53.8
Q ss_pred CcCChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC
Q psy4375 2 EIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS 58 (62)
Q Consensus 2 d~~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~ 58 (62)
++++++.++.||+||++|||||++|||||+|||+++|+|+|+||+.|| .++||+.|+
T Consensus 139 ~e~~Pe~~~~vk~lV~~Grle~~gG~Wv~~De~~~~~EslirQl~~G~~~~~~~FG~~~~ 198 (1045)
T 3bvx_A 139 HDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPT 198 (1045)
T ss_dssp HHSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHCCHHHHHHHHHHHhCCCEEEECCccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 468899999999999999999999999999999999999999999999 568999875
No 3
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}
Probab=99.56 E-value=1.4e-15 Score=119.54 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=50.8
Q ss_pred cCChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh--hhhcccccC
Q psy4375 3 IVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET--FSTFSVQSS 58 (62)
Q Consensus 3 ~~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh--~~~Fgv~p~ 58 (62)
++.++.++.||+||++|||| |+|+|||+||++++++++|+||+.|| +++||++|+
T Consensus 66 ~~~p~~~~~vk~lv~~Gr~e-igg~~v~~D~~~~~~es~irq~~~G~~~~~~fG~~~~ 122 (899)
T 3lvt_A 66 QVRPEKKEAVKKAVQAGKLK-IGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQ 122 (899)
T ss_dssp HHCGGGHHHHHHHHHTTSEE-CCSBSSCCCGGGSCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhCHHHHHHHHHHHHcCCEE-ECchhccccccCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 46789999999999999999 89999999999999999999999999 445999886
No 4
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Probab=99.54 E-value=2.4e-15 Score=117.86 Aligned_cols=54 Identities=17% Similarity=0.370 Sum_probs=49.5
Q ss_pred cCChHHHHHHHHHHHcCceeEEecce-eecccccccHHHHHHHHhhhh--hhhcccccC
Q psy4375 3 IVHPTKRNIVKKLIAEGRLEMVTGGW-VMTDEATSHIFAMVDQLIEET--FSTFSVQSS 58 (62)
Q Consensus 3 ~~~~~~k~~vk~LV~~GqlEfv~GGW-vm~DEA~~~y~~~Idq~t~Gh--~~~Fgv~p~ 58 (62)
++.++.++.||+||++||||| ||| ||+|||+++++|+|+||+.|| +++||+.|+
T Consensus 85 ~~~p~~~~~vk~lV~~Grlei--G~wYv~~D~~~~~~es~irq~~~G~~~~~~fG~~~~ 141 (923)
T 2wyh_A 85 KVRPEREPEIRQAIASGKLRI--GPFYILQDDFLTSSESNVRNMLIGKEDCDRWGASVP 141 (923)
T ss_dssp HHCGGGHHHHHHHHHTTSEEC--CSBSSCBCSTTSCHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHCHHHHHHHHHHHHcCCEEE--eeeeeccccccCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 357899999999999999996 999 999999999999999999999 444999886
No 5
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Probab=97.72 E-value=4.9e-05 Score=58.86 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh--hhhcccccC
Q psy4375 5 HPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET--FSTFSVQSS 58 (62)
Q Consensus 5 ~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh--~~~Fgv~p~ 58 (62)
.++.-+.+|+|+++|++|+++|+|+-++=....-.+++.|+..|. ++.||++|+
T Consensus 62 ~p~l~~~ik~l~~~G~vE~l~~~~~Hpi~~l~p~e~~~~QI~~g~~~~~~FG~~P~ 117 (659)
T 1k1x_A 62 KPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDYARKLGYDAK 117 (659)
T ss_dssp CHHHHHHHHHHHHTTCEEEEBCCTTCCCGGGSCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHHHCCCEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 455667899999999999999999999988888899999999988 559999985
No 6
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=96.24 E-value=0.0055 Score=47.25 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCceeEEecceeecccccc-cHHHHHHHHhhhh---hhhcccccC
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGWVMTDEATS-HIFAMVDQLIEET---FSTFSVQSS 58 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~-~y~~~Idq~t~Gh---~~~Fgv~p~ 58 (62)
+.=..+|+|++.|++||+++++.-.--..- .-.++..|+..|. .+.||.+|+
T Consensus 143 dii~~fr~L~~~G~iEiit~~~tH~~lPLl~~~e~~~~QI~~g~~~~~~~FG~~P~ 198 (540)
T 3p0b_A 143 DLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWAQIKTGVSTYRRHFAKDPT 198 (540)
T ss_dssp CHHHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHCCCEEEEcCCchhhHHhcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 345679999999999999999987766655 4688899999988 899999986
No 7
>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A*
Probab=96.11 E-value=0.0072 Score=46.79 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCceeEEecceeeccccccc-HHHHHHHHhhhh---hhhcccccC
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGWVMTDEATSH-IFAMVDQLIEET---FSTFSVQSS 58 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~-y~~~Idq~t~Gh---~~~Fgv~p~ 58 (62)
+.-..+|+|++.|++||+++++.-.--..-. -.++..|+..|. .+.||.+|+
T Consensus 122 dii~~fr~L~~~G~iElit~~~tH~~lPLl~~~e~~~~QI~~g~~~~~~~FG~~P~ 177 (562)
T 3n98_A 122 DIIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKPK 177 (562)
T ss_dssp CHHHHHHHHHHTTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHCCCEEEEcCCchhhHhhcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3456799999999999999999877665543 678889999888 899999986
No 8
>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4
Probab=95.80 E-value=0.012 Score=44.39 Aligned_cols=49 Identities=16% Similarity=0.003 Sum_probs=38.7
Q ss_pred HHHHHHHHcCceeEEecceeecccccc--cHHHHHHHHhhhh---hhhcccccC
Q psy4375 10 NIVKKLIAEGRLEMVTGGWVMTDEATS--HIFAMVDQLIEET---FSTFSVQSS 58 (62)
Q Consensus 10 ~~vk~LV~~GqlEfv~GGWvm~DEA~~--~y~~~Idq~t~Gh---~~~Fgv~p~ 58 (62)
..+|+|.+.|++||++++..-.==..- +-.++..|+..|- .+.||.+|+
T Consensus 126 ~~~r~L~~~G~vEll~~~y~H~ilPLl~d~~ed~~~QI~~g~~~~~~~FG~~P~ 179 (528)
T 2b5d_X 126 EGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVNAQITVGVKNYEKHMKKHPR 179 (528)
T ss_dssp HHHHHHHHHTSEEEEEECTTCBCGGGGTTCHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHCCCEEEEcCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 568999999999999998764322221 2588999999998 889999986
No 9
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=89.08 E-value=0.77 Score=29.19 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375 9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP 62 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~ 62 (62)
.+.+|+++++| .||-|=+|.-.+=..-....+..+|.... .+..|+.|+ -|||
T Consensus 46 ~~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P 102 (195)
T 2cc0_A 46 PSLVRAQVDAG-MWVANHSYTHPHMTQLGQAQMDSEISRTQQAIAGAGGGTPKLFRPP 102 (195)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHTTSCCCSEECCG
T ss_pred HHHHHHHHHCC-CEEEcCCCCccccccCCHHHHHHHHHHHHHHHHHHhCCCCCEEECC
Confidence 46899999999 89999999866555556778888888877 555788776 4665
No 10
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=87.80 E-value=0.81 Score=29.84 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=40.5
Q ss_pred HHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375 11 IVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP 62 (62)
Q Consensus 11 ~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~ 62 (62)
.+++++++| .||-+=+|.-.+=..-....+..+|.... .+..|++|+ -|||
T Consensus 50 ~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P 104 (216)
T 2c71_A 50 IIRRMVNSG-HEIGNHSWSYSGMANMSPDQIRKSIADTNAVIQKYAGTTPKFFRPP 104 (216)
T ss_dssp HHHHHHHTT-CEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSCCCSEECCG
T ss_pred HHHHHHHCC-CEEeeCCcCCcchhhCCHHHHHHHHHHHHHHHHHhhCCCCeEEECC
Confidence 899999999 89999999866555556778888888887 456788886 5766
No 11
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3
Probab=84.77 E-value=1.5 Score=29.28 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP 62 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~ 62 (62)
...+.+|+++++| .||-|=+|.-.+=..-....+..+|.... .+..|++|+ -|||
T Consensus 86 ~~p~~lr~i~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P 144 (254)
T 2iw0_A 86 SNPDTIRRMRADG-HLVGSHTYAHPDLNTLSSADRISQMRQLEEATRRIDGFAPKYMRAP 144 (254)
T ss_dssp THHHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCEESEECCG
T ss_pred cCHHHHHHHHHCC-CEEEeeccCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCCEEECC
Confidence 3457899999999 89999999865555556778888888877 455788876 4665
No 12
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=83.12 E-value=0.75 Score=27.08 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHcCceeEEecc
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTGG 27 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~GG 27 (62)
++-+.-+.++|++|+||+++||
T Consensus 48 ~eL~~fL~~~v~e~kL~~~~gG 69 (74)
T 1ldd_A 48 QQLEGYLNTLADEGRLKYIANG 69 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTT
T ss_pred HHHHHHHHHHHhCCeEEEeCCC
Confidence 5667778999999999987555
No 13
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=82.23 E-value=2.4 Score=28.02 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375 9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP 62 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~ 62 (62)
.+.+++++++| .||-|=+|.-.+=..-....+..+|.... .+..|+.|+ -|||
T Consensus 74 p~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P 130 (230)
T 2y8u_A 74 PGLLQRMRDEG-HQVGAHTYDHVSLPSLGYDGIASQMTRLEEVIRPALGVAPAYMRPP 130 (230)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSSCBSEECCG
T ss_pred HHHHHHHHHCC-CEEEecccCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCcEEECC
Confidence 46899999999 79999999876655556778888888777 455788776 3665
No 14
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=79.39 E-value=4.4 Score=24.17 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET 49 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh 49 (62)
...++.++.|++.|.+--+..+..++-++...+.+.|.++..-|
T Consensus 35 ~~~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 78 (121)
T 2pjp_A 35 QAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQEC 78 (121)
T ss_dssp HHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHHC
Confidence 34567899999999999999999999999999999999887666
No 15
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=77.52 E-value=3.5 Score=27.50 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccc-c-CCCCC
Q psy4375 9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQ-S-SKRPP 62 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~-p-~~~~~ 62 (62)
.+.+|+++++| .||-|=+|.-.+=..-....+..+|.... .+.+|++ | --|||
T Consensus 97 p~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~~fr~P 154 (247)
T 2j13_A 97 KDLLLRMKDEG-HIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPP 154 (247)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHCCSCCCEECCG
T ss_pred HHHHHHHHHCC-CEEEecCCCCcChhhCCHHHHHHHHHHHHHHHHHHhCCCCCcEEeCC
Confidence 46899999999 79999999876655566788888888887 5567887 4 34665
No 16
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=77.15 E-value=4.1 Score=27.69 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC
Q psy4375 9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS 58 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~ 58 (62)
.+.++++++.| .||-+=||.-.+=..-....+..+|..+. .+.+|.+|+
T Consensus 110 p~~v~~i~~~G-heIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~~p~ 161 (308)
T 3cl6_A 110 PDVIRAMVAAG-HEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGERPL 161 (308)
T ss_dssp HHHHHHHHHTT-CEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHcC-CEEEeCCCCCcccccCCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46899999999 79999999755544556677778887777 555788776
No 17
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}
Probab=75.69 E-value=4 Score=27.14 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=38.8
Q ss_pred HHHHHHHcCceeEEecceee--cccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375 11 IVKKLIAEGRLEMVTGGWVM--TDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP 62 (62)
Q Consensus 11 ~vk~LV~~GqlEfv~GGWvm--~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~ 62 (62)
.+|+++++| .||-|=+|.- .+=..-....+..+|.... .+..|++|+ -|||
T Consensus 72 ~~~~i~~~G-heIg~Ht~~H~~~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P 128 (254)
T 2vyo_A 72 LYRRAVEEG-HNVALRVDPSMDEGYQCLSQDALENNVDREIDTIDGLSGTEIRYAAVP 128 (254)
T ss_dssp HHHHHHHTT-CEEEEECCGGGTTCGGGSCHHHHHHHHHHHHHHHHHHHTSCCCEEECC
T ss_pred HHHHHHhCC-CEEEecCCCCCCcCcccCCHHHHHHHHHHHHHHHHHHHCCCCeEEeCC
Confidence 899999999 7999999977 4544556677888887777 555687775 3655
No 18
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=75.49 E-value=3 Score=25.09 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHcCceeEEecc
Q psy4375 5 HPTKRNIVKKLIAEGRLEMVTGG 27 (62)
Q Consensus 5 ~~~~k~~vk~LV~~GqlEfv~GG 27 (62)
..+.|..|..||++|.|||-+-|
T Consensus 36 ~r~vKK~~~~LV~Eg~leywSSG 58 (78)
T 1ucr_A 36 QREVKKILTALVNDEVLEYWSSG 58 (78)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHHhcCceEEEecC
Confidence 35678889999999999997655
No 19
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=73.82 E-value=3.7 Score=22.36 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCce----eEEecceeeccccc
Q psy4375 8 KRNIVKKLIAEGRL----EMVTGGWVMTDEAT 35 (62)
Q Consensus 8 ~k~~vk~LV~~Gql----Efv~GGWvm~DEA~ 35 (62)
.+..+++++++|+| .-|++-|....+|.
T Consensus 17 s~~Tl~r~ar~G~I~Pp~~KvGr~wrv~~~a~ 48 (52)
T 2og0_A 17 SLETVRRWVRESRIFPPPVKDGREYLFHESAV 48 (52)
T ss_dssp CHHHHHHHHHTTCEESCCEEETTEEEEETTCE
T ss_pred CHHHHHHHHHCCCCCCcccccCCEEEEcccce
Confidence 46789999999999 78999999887774
No 20
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=70.76 E-value=9.3 Score=22.44 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHcCceeEEec---ceeecc
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTG---GWVMTD 32 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~G---GWvm~D 32 (62)
...++.++.|.+.|-++..-| ||...+
T Consensus 58 ~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 58 SVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 567889999999999999873 555544
No 21
>3myr_B Nickel-dependent hydrogenase large subunit; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.18.1.0
Probab=69.39 E-value=2.2 Score=32.83 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCceeEEecceee------ccccc----ccHHHHHHHHhhhh
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGWVM------TDEAT----SHIFAMVDQLIEET 49 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGWvm------~DEA~----~~y~~~Idq~t~Gh 49 (62)
+.++.++.+|++|||-++.+||-= +-|++ +||...|+-=.+.+
T Consensus 150 ~v~~r~~~~v~~g~lgpf~~~ywg~~~y~l~pe~nl~~~~hYleAL~~qr~~~ 202 (561)
T 3myr_B 150 DTQKRIKTFVESGQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTA 202 (561)
T ss_dssp HHHHHHHHHHHTTCCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccccCCccCcccCCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999887653 44555 99999887665555
No 22
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=69.28 E-value=11 Score=21.83 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHcCceeEEecceeecccccccH
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHI 38 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y 38 (62)
...+..+..|.+.|-++...||++-+++....+
T Consensus 35 ~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 35 ALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHHHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEECCeeEEChhHHHHH
Confidence 345778999999999999999999999988543
No 23
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=66.65 E-value=9 Score=25.15 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccc-cC-CCCC
Q psy4375 9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQ-SS-KRPP 62 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~-p~-~~~~ 62 (62)
.+.+++++++| .||-+=+|.-.+=..-....+..+|.... .+..|++ |+ -|||
T Consensus 85 p~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~~fr~P 142 (240)
T 1ny1_A 85 PQLIKRMSDEG-HIIGNHSFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNLYLRPP 142 (240)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCCEECCG
T ss_pred HHHHHHHHHCc-CChhcCCccccccccCCHHHHHHHHHHHHHHHHHHhCCCCCcEEeCC
Confidence 46899999999 89999999866555556778888888877 4556876 44 4655
No 24
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Probab=66.37 E-value=8.8 Score=28.14 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375 9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP 62 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~ 62 (62)
.+.+++++++| .||-+=+|.-.+=..-....+..+|.... .+..|..|+ -|||
T Consensus 278 p~~lr~m~~~G-heIgnHT~sH~~l~~ls~~~~~~EI~~s~~~L~~~~G~~~~~fr~P 334 (431)
T 2c1i_A 278 EDLVKRIKSEG-HVVGNHSWSHPILSQLSLDEAKKQITDTEDVLTKVLGSSSKLMRPP 334 (431)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCEECCG
T ss_pred HHHHHHHHHCC-CEEeecCCCCcccccCCHHHHHHHHHHHHHHHHHhhCCCCeEEECC
Confidence 46799999999 79999999865544445677788887777 556777775 3665
No 25
>3ayx_A Membrane-bound hydrogenase large subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_A 3ayz_A 3rgw_L
Probab=66.09 E-value=2.4 Score=32.61 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCceeEEecce----------eecccccccHHHHHHHHhhhh
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGW----------VMTDEATSHIFAMVDQLIEET 49 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGW----------vm~DEA~~~y~~~Idq~t~Gh 49 (62)
+.++.++++|++|||.++.+++ -.+--|.+||...++-=..++
T Consensus 166 ~v~~~~~~~v~~g~lg~f~~~~wg~p~~~~~pe~~~~~~~hy~~al~~r~~~~ 218 (596)
T 3ayx_A 166 DIQIRIQKFVDSGQLGIFKNGYWSNPAYKLSPEADLMAVTHYLEALDFQKEIV 218 (596)
T ss_dssp HHHHHHHHHHHTTCCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccccccccccCCccccCChhhhhHHHHHHHHHHHHHHHHH
Confidence 4677899999999999988776 333345667776665444444
No 26
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=64.83 E-value=5.9 Score=22.89 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCce----eEEecceeeccccc
Q psy4375 8 KRNIVKKLIAEGRL----EMVTGGWVMTDEAT 35 (62)
Q Consensus 8 ~k~~vk~LV~~Gql----Efv~GGWvm~DEA~ 35 (62)
.+..|++++++|+| .-|++-|....+|.
T Consensus 17 s~~Tl~r~ar~G~I~Pp~~KvGr~Wrv~~~a~ 48 (72)
T 1pm6_A 17 SLETVRRWVRESRIFPPPVKDGREYLFHESAV 48 (72)
T ss_dssp CHHHHHHHHHHTCEESCCEECSSSEEEETTCE
T ss_pred CHHHHHHHHHCCCCCCchhhcCCEEEECchhe
Confidence 35689999999999 78999999888775
No 27
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}
Probab=62.09 E-value=14 Score=24.78 Aligned_cols=49 Identities=10% Similarity=0.084 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC
Q psy4375 9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS 58 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~ 58 (62)
.+.++.+++.| .||-+=||.-.+-..-....+.++|..+. .+.+|.+|+
T Consensus 91 p~~v~~~~~~G-hEIg~H~~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~~p~ 142 (300)
T 3rxz_A 91 PEPIRSIARAG-HEIAHHGYLHESLVGADEDTERKILTRGIEALEEVAGVHPV 142 (300)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHcC-CEEEecCCCCcccccCCHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 47899999999 79999999877666666778888888777 455787775
No 28
>3uqy_L Hydrogenase-1 large chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_L* 3use_L*
Probab=59.50 E-value=3 Score=32.32 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCceeEEecceeec----------ccccccHHHHHHH
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGWVMT----------DEATSHIFAMVDQ 44 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGWvm~----------DEA~~~y~~~Idq 44 (62)
+.++.|+.+|++|||-++.|||--| --|.+||...|+-
T Consensus 165 ~v~~r~~~~v~~g~lgpF~~~ywgh~~y~l~pe~nl~~~~hYleAL~~ 212 (582)
T 3uqy_L 165 DVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDF 212 (582)
T ss_dssp HHHHHHHHHHHTSCCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccCCcCCcccCCccccCCHHHHHHHHHHHHHHHHH
Confidence 5678899999999999988777532 2347888887764
No 29
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=57.28 E-value=5.9 Score=23.70 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=24.7
Q ss_pred cCceeEEecceeecccccccHHHHHHHH
Q psy4375 18 EGRLEMVTGGWVMTDEATSHIFAMVDQL 45 (62)
Q Consensus 18 ~GqlEfv~GGWvm~DEA~~~y~~~Idq~ 45 (62)
-|.+||-+|=-++++.+++-..+++.++
T Consensus 29 ~G~FeFd~GkillP~~~d~~~~~~~sEI 56 (78)
T 2jro_A 29 LGRLEFEKGRFLLPRKSLPKVKQAILEL 56 (78)
T ss_dssp TEEEEEETTEECCCSSCCHHHHHHHHHH
T ss_pred cccEEEcCCEEeCCccccHHHHHHHHHH
Confidence 4899999999999999999888877665
No 30
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=57.15 E-value=16 Score=25.25 Aligned_cols=54 Identities=13% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCceeEEecceeecccc-----cccHHHHHHHHhhhh---hhhcc--cccC-CCCC
Q psy4375 8 KRNIVKKLIAEGRLEMVTGGWVMTDEA-----TSHIFAMVDQLIEET---FSTFS--VQSS-KRPP 62 (62)
Q Consensus 8 ~k~~vk~LV~~GqlEfv~GGWvm~DEA-----~~~y~~~Idq~t~Gh---~~~Fg--v~p~-~~~~ 62 (62)
..+.+++++++| .||-+=+|.-.+-. .-....+..+|.... .+..| ..|+ -|||
T Consensus 149 ~p~~vr~i~~~G-heIgnHt~sH~~~~~~~~~~ls~~~~~~Ei~~~~~~L~~~~G~~~~p~~fR~P 213 (311)
T 2w3z_A 149 VKPILQRQITEG-HALGIHSFSHVYSLLYPNRVGNTQQIVSEVTRTQNALKDQLGQNFKTGVWRYP 213 (311)
T ss_dssp GHHHHHHHHHTT-CEEEECCSSCCHHHHSGGGBCCHHHHHHHHHHHHHHHHHHHCTTBCCCEECCT
T ss_pred CHHHHHHHHHCC-CeeeccCCccccccccccCCCCHHHHHHHHHHHHHHHHHHhCCCCCCcEEECC
Confidence 357899999999 79999999643221 225677888888777 45567 6665 4776
No 31
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=57.12 E-value=18 Score=24.80 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC-CCCC
Q psy4375 9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS-KRPP 62 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~-~~~~ 62 (62)
.+.++.+++.|. ||-+=||.=.+-..-....+.++|..+. .+.+|.+|+ -|||
T Consensus 103 p~~v~~i~~~Gh-EIg~H~~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~~p~~fr~P 159 (326)
T 3qbu_A 103 PEQMKMIVDAGH-EVGAHGYSHENPIAMSTKQEEDVLLKSVELIKDLTGKAPTGYVAP 159 (326)
T ss_dssp HHHHHHHHTTTC-EEEBCCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSSCCCEECCG
T ss_pred HHHHHHHHHcCC-EEEeCCCCCcChhhCCHHHHHHHHHHHHHHHHHHHCCCCcEEECC
Confidence 467999999997 9999999766655566778888888777 455788775 3443
No 32
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=56.88 E-value=15 Score=24.61 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET 49 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh 49 (62)
...++.++.|++.|.+--|..+.+++-++...+-+.|.++. -|
T Consensus 172 ~~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~~~~~~l~~~~-~~ 214 (258)
T 1lva_A 172 SELEELLHYLVREGVLVKINDEFYWHRQALGEAREVIKNLA-ST 214 (258)
T ss_dssp HHHHHHHHHHHHTTSEEESSSSBEEEHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCCEEEecCCeEEcHHHHHHHHHHHHHHH-hc
Confidence 34577899999999999999999999999999999998886 44
No 33
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=55.66 E-value=13 Score=21.41 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=21.8
Q ss_pred cCChHHHHHHHHHHHcCceeEEecc
Q psy4375 3 IVHPTKRNIVKKLIAEGRLEMVTGG 27 (62)
Q Consensus 3 ~~~~~~k~~vk~LV~~GqlEfv~GG 27 (62)
+.+++.++.|+++|++..+.+.+-+
T Consensus 2 ~~s~~~~~~v~~~i~~~~Vvvy~k~ 26 (109)
T 3ipz_A 2 ALTPQLKDTLEKLVNSEKVVLFMKG 26 (109)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEESB
T ss_pred CCCHHHHHHHHHHHccCCEEEEEec
Confidence 3577889999999999999998877
No 34
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=54.95 E-value=22 Score=22.69 Aligned_cols=43 Identities=28% Similarity=0.357 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHcCceeEEe-cceeecccccccHHHHHHHHhhh
Q psy4375 6 PTKRNIVKKLIAEGRLEMVT-GGWVMTDEATSHIFAMVDQLIEE 48 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~-GGWvm~DEA~~~y~~~Idq~t~G 48 (62)
...|..++.|.+.|-+|... +|..-+.........+..++...
T Consensus 96 ~tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~~~~l~~ia~~i~~~ 139 (150)
T 2v7f_A 96 SIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKKE 139 (150)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeCCCceEECCCCHHHHHHHHHHHHHH
Confidence 35788999999999999984 48888877766666666666543
No 35
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=53.74 E-value=11 Score=21.25 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCcCChHHHHHHHHHHHcCceeEEecceee
Q psy4375 1 MEIVHPTKRNIVKKLIAEGRLEMVTGGWVM 30 (62)
Q Consensus 1 ~d~~~~~~k~~vk~LV~~GqlEfv~GGWvm 30 (62)
|...+.+.++.++++++...+.+.+--||-
T Consensus 1 m~~~~~~~~~~~~~~i~~~~v~vy~~~~Cp 30 (113)
T 3rhb_A 1 MASFGSRMEESIRKTVTENTVVIYSKTWCS 30 (113)
T ss_dssp -----CHHHHHHHHHHHHSSEEEEECTTCH
T ss_pred CCchHHHHHHHHHHHHhcCCEEEEECCCCh
Confidence 445567788899999999999999888874
No 36
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=53.30 E-value=27 Score=20.39 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHcCceeEE---ecceeecccccc-cHHHHHHHHhhhh
Q psy4375 6 PTKRNIVKKLIAEGRLEMV---TGGWVMTDEATS-HIFAMVDQLIEET 49 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv---~GGWvm~DEA~~-~y~~~Idq~t~Gh 49 (62)
...++.++.|.+.|=++-. +|||+-...+.. ...+++.-+ +|.
T Consensus 41 ~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~itl~di~~~~-e~~ 87 (129)
T 2y75_A 41 HYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDAITAGDIIRVL-EGP 87 (129)
T ss_dssp HHHHHHHHHHHHTTSEEEC----CCEEESSCGGGCBHHHHHHHH-HCC
T ss_pred HHHHHHHHHHHHCCceEecCCCCCceEeCCCHHHCcHHHHHHHH-cCc
Confidence 4567789999999999987 589998765543 455555544 554
No 37
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=50.85 E-value=17 Score=20.71 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=22.6
Q ss_pred CChHHHHHHHHHHHcCceeEE--ecceee
Q psy4375 4 VHPTKRNIVKKLIAEGRLEMV--TGGWVM 30 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEfv--~GGWvm 30 (62)
...+.|..+.+|.+.|.++-+ .||=|-
T Consensus 29 S~~TIRrdL~~Le~~G~l~R~~~~GgaC~ 57 (78)
T 1xn7_A 29 PQPMINAMLQQLESMGKAVRIQEEPDGCL 57 (78)
T ss_dssp CHHHHHHHHHHHHHHTSEEEECCCCCCCC
T ss_pred CHHHHHHHHHHHHHCCCEEEecCcCCCCC
Confidence 346788999999999999999 777664
No 38
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=49.90 E-value=26 Score=22.87 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCceeEE-ecceeecc
Q psy4375 6 PTKRNIVKKLIAEGRLEMV-TGGWVMTD 32 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv-~GGWvm~D 32 (62)
...|+.++.|...|-++.. ++|++-.+
T Consensus 64 ~~VReAL~~L~~~Glv~~~~~~G~~V~~ 91 (237)
T 3c7j_A 64 MPVREALRQLEAQSLLRVETHKGAVVAP 91 (237)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEeCCCceEEec
Confidence 4678999999999999999 77876543
No 39
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=49.67 E-value=20 Score=20.50 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHcCceeEEe---cceeecc
Q psy4375 6 PTKRNIVKKLIAEGRLEMVT---GGWVMTD 32 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~---GGWvm~D 32 (62)
.+.+..+++|.++|.++.++ |.|.-..
T Consensus 42 ~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~ 71 (81)
T 1qbj_A 42 KEINRVLYSLAKKGKLQKEAGTPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHHTTSEEEESSSSCEEEEC-
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCeeEEeC
Confidence 45678899999999999986 5787654
No 40
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=47.92 E-value=21 Score=20.45 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHcCceeEEecceee
Q psy4375 5 HPTKRNIVKKLIAEGRLEMVTGGWVM 30 (62)
Q Consensus 5 ~~~~k~~vk~LV~~GqlEfv~GGWvm 30 (62)
+++.++.|++++++..+.+.+--||-
T Consensus 3 ~~~~~~~~~~~i~~~~v~vy~~~~Cp 28 (114)
T 3h8q_A 3 REELRRHLVGLIERSRVVIFSKSYCP 28 (114)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECTTCH
T ss_pred hHHHHHHHHHHhccCCEEEEEcCCCC
Confidence 46778899999999999998887764
No 41
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=47.63 E-value=26 Score=21.33 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHcCceeEE--ecceeecccccc-cHHHHHHHHhhh
Q psy4375 6 PTKRNIVKKLIAEGRLEMV--TGGWVMTDEATS-HIFAMVDQLIEE 48 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv--~GGWvm~DEA~~-~y~~~Idq~t~G 48 (62)
...++.+++|.+.|=++-+ +|||+-...+.. ...+++.- ++|
T Consensus 45 ~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p~~Itl~dVi~a-~e~ 89 (149)
T 1ylf_A 45 VVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHEITLLDVYHA-VNV 89 (149)
T ss_dssp HHHHHHHHHHHHTTSEEEC---CCEEESSCGGGCBHHHHHHH-HCC
T ss_pred HHHHHHHHHHHHCCcEEEccCCCceEeCCChhhCcHHHHHHH-Hcc
Confidence 3457789999999999988 899998876644 35555554 455
No 42
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=46.52 E-value=37 Score=19.53 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHcCceeEEecceeecccccccHHHHH
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMV 42 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~I 42 (62)
+.....+++|.+.|-++...+++.-++++...+..+.
T Consensus 46 ~tv~~~l~~Le~~Gli~r~~~~~~Lt~~g~~~~~~~~ 82 (139)
T 2x4h_A 46 SSVFEEVSHLEEKGLVKKKEDGVWITNNGTRSINYLI 82 (139)
T ss_dssp HHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEecCCeEEEChhHHHHHHHHH
Confidence 4567789999999999988888998888776555444
No 43
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=46.49 E-value=6.1 Score=19.43 Aligned_cols=7 Identities=43% Similarity=0.724 Sum_probs=4.3
Q ss_pred cccCCCC
Q psy4375 55 VQSSKRP 61 (62)
Q Consensus 55 v~p~~~~ 61 (62)
-+|+|||
T Consensus 5 rrprkrp 11 (28)
T 3ukw_C 5 RRPRKRP 11 (28)
T ss_dssp --CCCCC
T ss_pred cccccCC
Confidence 3688887
No 44
>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=46.04 E-value=7.6 Score=29.16 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCceeEEecce
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGW 28 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGW 28 (62)
+.|+.++++|++|||....+++
T Consensus 151 ~vq~~~~~~v~~g~l~~f~~~~ 172 (534)
T 1wui_L 151 AVQDKLKTFVETGQLGPFTNAY 172 (534)
T ss_dssp HHHHHHHHHHHTTCCGGGTTCT
T ss_pred HHHHHHHhhhhccccCcccccc
Confidence 4577899999999997554333
No 45
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6
Probab=45.33 E-value=36 Score=23.38 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCceeEEecceeecccccccHHHHHHHHhhhh---hhhcccccC
Q psy4375 9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIEET---FSTFSVQSS 58 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~ 58 (62)
.+.++.+++.| .||-+=||.-.+=..-....+.++|.... .+..|.+|+
T Consensus 115 p~~v~~i~~~G-hEIg~H~~~H~~~~~ls~~~~~~ei~~~~~~l~~~~G~~p~ 166 (321)
T 3s6o_A 115 PELARAFVELG-HEIACHGWRWIHYQDMTPEREAEHMRLGMEAIERVTGVRPL 166 (321)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCSCCTTCCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHcC-CEEeeCCccccccccCCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46799999999 89999999866555556677777777777 455677775
No 46
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=45.18 E-value=24 Score=20.87 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHcCceeEEecc
Q psy4375 5 HPTKRNIVKKLIAEGRLEMVTGG 27 (62)
Q Consensus 5 ~~~~k~~vk~LV~~GqlEfv~GG 27 (62)
+++.++.|+++|++..+.+.+-+
T Consensus 2 ~~~~~~~v~~~i~~~~Vvvfsk~ 24 (121)
T 3gx8_A 2 STEIRKAIEDAIESAPVVLFMKG 24 (121)
T ss_dssp CHHHHHHHHHHHHSCSEEEEESB
T ss_pred CHHHHHHHHHHhccCCEEEEEec
Confidence 56788999999999999999877
No 47
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=44.03 E-value=19 Score=21.18 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHcCceeEEec
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTG 26 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~G 26 (62)
...+..+++||.+|.|..+-|
T Consensus 48 ~~l~~aLk~~v~~G~l~q~Kg 68 (90)
T 1hst_A 48 LQIKLSIRRLLAAGVLKQTKG 68 (90)
T ss_dssp HHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHHcCCeeeecC
Confidence 346778999999999999987
No 48
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=42.06 E-value=29 Score=20.82 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHcCceeEEecceee
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTGGWVM 30 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~GGWvm 30 (62)
+..|.....|...|+++|.=+|=+-
T Consensus 44 ~~vR~~A~~La~~G~v~I~qkG~pV 68 (85)
T 2ns0_A 44 EPVREAAGRLADAGEVEVTQKGAVV 68 (85)
T ss_dssp HHHHHHHHHHHHTTSEEEEETTEEC
T ss_pred HHHHHHHHHHHHCCcEEEEECCEEc
Confidence 4578889999999999999988765
No 49
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=41.61 E-value=40 Score=23.00 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHHcCceeEEecceeecccccccHHHHHHH
Q psy4375 4 VHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQ 44 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq 44 (62)
-....|..|.+|+++|.|+-.--||-.++.+...+...-..
T Consensus 36 ~e~avRtAlsRL~~~G~L~~~~~GY~LT~~~~~~~~~~~~r 76 (247)
T 3kfw_X 36 KETTLRVALTRMVGAGDLVRSADGYRLSDRLLARQRRQDEA 76 (247)
T ss_dssp CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCeeccCCceeeCHHHHHHHHHHHHH
Confidence 35678999999999999999988899999887766544333
No 50
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=40.36 E-value=33 Score=19.81 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=24.0
Q ss_pred CChHHHHHHHHHHHcCceeEEecceeec
Q psy4375 4 VHPTKRNIVKKLIAEGRLEMVTGGWVMT 31 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEfv~GGWvm~ 31 (62)
.+++..+.|+.+++...+.+.+--||-.
T Consensus 10 ~~~~~~~~~~~~i~~~~Vvvf~~~~Cp~ 37 (118)
T 3c1r_A 10 VSQETIKHVKDLIAENEIFVASKTYCPY 37 (118)
T ss_dssp SCHHHHHHHHHHHHHSSEEEEECSSCHH
T ss_pred cCHHHHHHHHHHHccCcEEEEEcCCCcC
Confidence 4677888999999999999999988854
No 51
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=40.31 E-value=56 Score=19.20 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHcCceeEE-ecceeecccccccHHHHH
Q psy4375 6 PTKRNIVKKLIAEGRLEMV-TGGWVMTDEATSHIFAMV 42 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv-~GGWvm~DEA~~~y~~~I 42 (62)
......+++|.+.|-++.. ++|+..++.+...+..+.
T Consensus 69 ~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~~ 106 (155)
T 2h09_A 69 PTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESR 106 (155)
T ss_dssp HHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHHH
Confidence 4567789999999999887 567888887766555543
No 52
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=39.47 E-value=40 Score=18.73 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHcCceeEEe---cceee
Q psy4375 6 PTKRNIVKKLIAEGRLEMVT---GGWVM 30 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~---GGWvm 30 (62)
.+.+..+++|.+.|.++.++ |.|..
T Consensus 46 ~tV~~~L~~L~~~G~I~~~g~~~~~W~i 73 (77)
T 1qgp_A 46 KEINRVLYSLAKKGKLQKEAGTPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHHHHTSEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCceEe
Confidence 45677899999999999986 46754
No 53
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=38.31 E-value=30 Score=19.47 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHcCceeEE-----ecceeec
Q psy4375 5 HPTKRNIVKKLIAEGRLEMV-----TGGWVMT 31 (62)
Q Consensus 5 ~~~~k~~vk~LV~~GqlEfv-----~GGWvm~ 31 (62)
.+..++.++.|.+.|-++.. .+||...
T Consensus 47 ~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 47 VNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred HHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 35678899999999999998 6776544
No 54
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=38.15 E-value=28 Score=20.45 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCceeEEec
Q psy4375 7 TKRNIVKKLIAEGRLEMVTG 26 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~G 26 (62)
--++.++-|++.|+.+++.+
T Consensus 51 ~L~kaL~~L~k~gkA~i~~~ 70 (79)
T 3htu_A 51 TLLRALQALQQEHKAEIITV 70 (79)
T ss_dssp HHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHcCCEEEEec
Confidence 34678999999999999975
No 55
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=37.71 E-value=25 Score=21.06 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=17.0
Q ss_pred CcCChHHHHHHHHHHHcCce
Q psy4375 2 EIVHPTKRNIVKKLIAEGRL 21 (62)
Q Consensus 2 d~~~~~~k~~vk~LV~~Gql 21 (62)
|+..++.|+.|+++|++|..
T Consensus 82 ~~L~~eDq~~i~~~~e~g~~ 101 (106)
T 2dmj_A 82 SELRWDDQQKVKKTAEAGGS 101 (106)
T ss_dssp TTSCHHHHHHHHHHHHHCSS
T ss_pred HHCCHHHHHHHHHHHHhCCC
Confidence 56788999999999999863
No 56
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=36.97 E-value=27 Score=22.57 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCceeEEeccee
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGWV 29 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGWv 29 (62)
..++.+..|+++|-..||+||=.
T Consensus 31 ~L~~~l~~l~~~G~~~~isgga~ 53 (181)
T 2nx2_A 31 AIKNRLIAFLDEGLEWILISGQL 53 (181)
T ss_dssp HHHHHHHHHHTTTCCEEEECCCT
T ss_pred HHHHHHHHHHhCCCcEEEECCCc
Confidence 34456777788898899998743
No 57
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=35.67 E-value=19 Score=24.75 Aligned_cols=31 Identities=16% Similarity=0.565 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCceeEEecceeecccccccHHHHHHHH
Q psy4375 8 KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL 45 (62)
Q Consensus 8 ~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~ 45 (62)
..+.+.|+|.+|| ||||+ |-+..|..++..+
T Consensus 57 ~~~l~~KiV~~~R-----GGyC~--ElN~Lf~~~L~~L 87 (295)
T 2ija_A 57 LEAIFDQVVRRNR-----GGWCL--QVNHLLYWALTTI 87 (295)
T ss_dssp HHHHHHHHHTTCC-----CBCHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-----cEEhH--HHHHHHHHHHHHc
Confidence 4567889998886 99998 6667777777766
No 58
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.54 E-value=8.5 Score=25.39 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.0
Q ss_pred cCChHHHHHHHHHHHcCceeE
Q psy4375 3 IVHPTKRNIVKKLIAEGRLEM 23 (62)
Q Consensus 3 ~~~~~~k~~vk~LV~~GqlEf 23 (62)
.+++.+|+.+++||++|-+-.
T Consensus 32 Ia~A~sR~~IRkLIkdG~I~~ 52 (150)
T 3j21_Q 32 VASAITREDIKRLIKEGVIKK 52 (150)
T ss_dssp HHTCCSHHHHHHHHHTTSEEE
T ss_pred HHhcccHHHHHHHHHCCCeEe
Confidence 356678999999999997754
No 59
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=35.20 E-value=55 Score=19.87 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHcCceeEE---ecceeecccccc-cHHHHHHHHhhhh
Q psy4375 6 PTKRNIVKKLIAEGRLEMV---TGGWVMTDEATS-HIFAMVDQLIEET 49 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv---~GGWvm~DEA~~-~y~~~Idq~t~Gh 49 (62)
...++.+++|.+.|=++-+ +|||.-.-.+.. ...+++.- ++|.
T Consensus 43 ~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~Itl~dV~~a-veg~ 89 (143)
T 3t8r_A 43 LYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRL-LEGP 89 (143)
T ss_dssp HHHHHHHHHHHHTTSEEECSSSSSEEEESSCGGGCBHHHHHHH-HHCC
T ss_pred HHHHHHHHHHHHCCEEEecCCCCCCeeecCCcccCCHHHHHHH-hCCC
Confidence 3457789999999999987 689998776653 45566654 4665
No 60
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=34.41 E-value=23 Score=20.02 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHcCceeEEec
Q psy4375 5 HPTKRNIVKKLIAEGRLEMVTG 26 (62)
Q Consensus 5 ~~~~k~~vk~LV~~GqlEfv~G 26 (62)
+...+..++++|++|.|.-+-|
T Consensus 47 ~~~l~~aLk~~v~~G~l~q~KG 68 (78)
T 1uhm_A 47 DLYFNNAIKKGVEAGDFEQPKG 68 (78)
T ss_dssp HHHHHHHHHHHHHTTSEECCCT
T ss_pred HHHHHHHHHHHHHcCCEEeccC
Confidence 3456778999999999999654
No 61
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=33.56 E-value=43 Score=20.18 Aligned_cols=42 Identities=10% Similarity=0.201 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCceeEE--ecceeecccccc-cHHHHHHHHhhhh
Q psy4375 7 TKRNIVKKLIAEGRLEMV--TGGWVMTDEATS-HIFAMVDQLIEET 49 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv--~GGWvm~DEA~~-~y~~~Idq~t~Gh 49 (62)
-.++.+.+|.+.|=++-+ +|||.-.-.+.. ...+++.- ++|.
T Consensus 39 ~l~kIl~~L~~aGlv~s~rG~GGy~Lar~p~~Itl~dVi~a-veg~ 83 (145)
T 1xd7_A 39 VVRRMISLLKKADILTSRAGVPGASLKKDPADISLLEVYRA-VQKQ 83 (145)
T ss_dssp HHHHHHHHHHHTTSEECCSSSSSCEESSCGGGCBHHHHHHH-HCC-
T ss_pred HHHHHHHHHHHCCceEeecCCCCceecCCHHHCCHHHHHHH-HcCC
Confidence 356789999999999888 799998776544 45566654 4555
No 62
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=32.33 E-value=51 Score=18.30 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHHHcCceeEEec
Q psy4375 4 VHPTKRNIVKKLIAEGRLEMVTG 26 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEfv~G 26 (62)
.+++.++.|+.+++...+.+..-
T Consensus 2 ~~~~~~~~~~~~i~~~~vvvf~~ 24 (105)
T 2yan_A 2 MAPKLEERLKVLTNKASVMLFMK 24 (105)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEES
T ss_pred ccHHHHHHHHHHhccCCEEEEEe
Confidence 35778899999999999888765
No 63
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=32.29 E-value=22 Score=20.70 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCceeEEec
Q psy4375 7 TKRNIVKKLIAEGRLEMVTG 26 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~G 26 (62)
..+..++++|.+|.|.-+-|
T Consensus 53 ~lk~aLK~~v~~G~lvq~Kg 72 (88)
T 1uss_A 53 LFNSAIKKCVENGELVQPKG 72 (88)
T ss_dssp HHHHHHHHHHHHSSEECSST
T ss_pred HHHHHHHHHHHcCCEEeccC
Confidence 35778999999999999877
No 64
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=31.48 E-value=51 Score=19.50 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHcCceeEEecceee
Q psy4375 4 VHPTKRNIVKKLIAEGRLEMVTGGWVM 30 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEfv~GGWvm 30 (62)
.+++.++.|+.+++...+.+.+--||.
T Consensus 22 ~~~~~~~~v~~~i~~~~Vvvy~~~~Cp 48 (129)
T 3ctg_A 22 VSQETVAHVKDLIGQKEVFVAAKTYCP 48 (129)
T ss_dssp CCHHHHHHHHHHHHHSSEEEEECTTCH
T ss_pred ccHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 356788999999999999999888874
No 65
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=30.98 E-value=64 Score=17.16 Aligned_cols=40 Identities=15% Similarity=0.336 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHcCceeEEecc----eeecccccccHHHHHHHH
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTGG----WVMTDEATSHIFAMVDQL 45 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~GG----Wvm~DEA~~~y~~~Idq~ 45 (62)
+.....++.|.+.|-++....| |.-+++........+.++
T Consensus 53 ~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l~~~ 96 (99)
T 3cuo_A 53 SATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNV 96 (99)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHHh
Confidence 4566789999999999987544 455666555555555443
No 66
>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*
Probab=30.85 E-value=26 Score=20.54 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.4
Q ss_pred EecceeecccccccHHHHHHHHhhhh
Q psy4375 24 VTGGWVMTDEATSHIFAMVDQLIEET 49 (62)
Q Consensus 24 v~GGWvm~DEA~~~y~~~Idq~t~Gh 49 (62)
+-|||.-.+++.+..+.+.+....-+
T Consensus 2 m~GG~~~~~~~~~evq~i~~~a~~~~ 27 (98)
T 2oct_A 2 MSGAPSATQPATAETQHIADQVRSQL 27 (98)
T ss_dssp CCSSCCCCEECCHHHHHHHHHHHHHH
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHHH
Confidence 36999988889999999988876544
No 67
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=30.55 E-value=61 Score=19.09 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCceeEE-ecceeeccc
Q psy4375 6 PTKRNIVKKLIAEGRLEMV-TGGWVMTDE 33 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv-~GGWvm~DE 33 (62)
...|+.++.|.+.|-++.. +.||...+.
T Consensus 52 ~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125)
T 3neu_A 52 NTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred HHHHHHHHHHHHCCeEEEecCCEEEEecC
Confidence 4678899999999999998 457776653
No 68
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=30.42 E-value=36 Score=24.25 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHHcCceeEEecc
Q psy4375 5 HPTKRNIVKKLIAEGRLEMVTGG 27 (62)
Q Consensus 5 ~~~~k~~vk~LV~~GqlEfv~GG 27 (62)
.+..|++++.|-..|-+||++-|
T Consensus 230 k~KIRQqLQ~LRD~g~IeFl~rG 252 (257)
T 4esj_A 230 KEKIRQQLQILRDKEIIEFKGRG 252 (257)
T ss_dssp HHHHHHHHHHHHHTTSEEECSTT
T ss_pred hHHHHHHHHHHhhcCceEEecCC
Confidence 35679999999999999999766
No 69
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Probab=30.29 E-value=33 Score=25.81 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCcee-EEecce
Q psy4375 7 TKRNIVKKLIAEGRLE-MVTGGW 28 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlE-fv~GGW 28 (62)
+.|+.++++|++|||. |.+|=|
T Consensus 162 ~vq~~~~~~v~~g~lg~f~~~~w 184 (549)
T 1yqw_Q 162 AVQDKLKAFVESGQLGIFTNAYF 184 (549)
T ss_dssp HHHHHHHHHHHTTCCGGGTTCTT
T ss_pred HHHHHHHHHhhccccCcccCCcc
Confidence 4677899999999996 455555
No 70
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=30.18 E-value=96 Score=20.63 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCceeEEecceeecc
Q psy4375 9 RNIVKKLIAEGRLEMVTGGWVMTD 32 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv~GGWvm~D 32 (62)
.+.+++|.++|-.||-+=+|..|.
T Consensus 126 ~~~lr~m~~~G~~eIgsHT~~hH~ 149 (268)
T 3vus_A 126 WQQVREVARSRLVELASHTWNSHY 149 (268)
T ss_dssp HHHHHHHHHTTSEEECBCCSSCCS
T ss_pred HHHHHHHHHCCCeEEecCcccccc
Confidence 468999999999999999998654
No 71
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=29.62 E-value=50 Score=20.89 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=16.6
Q ss_pred CChHHHHHHHHHHHcCceeEEec
Q psy4375 4 VHPTKRNIVKKLIAEGRLEMVTG 26 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEfv~G 26 (62)
.++..++.+++|.++|.+-+++|
T Consensus 24 i~~~~~~al~~l~~~g~v~iaTG 46 (239)
T 1u02_A 24 ADAGLLSLISDLKERFDTYIVTG 46 (239)
T ss_dssp CCHHHHHHHHHHHHHSEEEEECS
T ss_pred CCHHHHHHHHHHhcCCCEEEEeC
Confidence 46778888888888885555565
No 72
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=29.05 E-value=20 Score=20.92 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=14.2
Q ss_pred ecccccccHHHHHHHHh
Q psy4375 30 MTDEATSHIFAMVDQLI 46 (62)
Q Consensus 30 m~DEA~~~y~~~Idq~t 46 (62)
--|.|.++|+.++.||.
T Consensus 27 nYdta~~yY~g~~~qI~ 43 (78)
T 2rpa_A 27 NYDSAMVYYQGVLDQMN 43 (78)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 35889999999998875
No 73
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=29.04 E-value=25 Score=24.07 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHH
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL 45 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~ 45 (62)
+..+.+.|+|.+|| ||||+ |-+..|..++..+
T Consensus 56 d~~~l~~KiV~~~R-----GGyC~--ElN~Lf~~~L~~L 87 (278)
T 1w5r_A 56 SAEALFAKLVDRRR-----GGYQY--EHNGLLGYVLEEL 87 (278)
T ss_dssp SHHHHHHHHTTTCC-----CBCHH--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCC-----ceehH--HHHHHHHHHHHHc
Confidence 34567889998886 99998 6666777777766
No 74
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=28.44 E-value=63 Score=18.91 Aligned_cols=20 Identities=15% Similarity=0.521 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCceeEEec
Q psy4375 7 TKRNIVKKLIAEGRLEMVTG 26 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~G 26 (62)
+.-..+.+|++.|+||+.-.
T Consensus 46 ~r~~aIN~LL~~gkiel~K~ 65 (81)
T 2dk8_A 46 QRAVAINRLLSMGQLDLLRS 65 (81)
T ss_dssp HHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEec
Confidence 34456899999999998744
No 75
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=28.41 E-value=12 Score=24.45 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCceeEEec
Q psy4375 8 KRNIVKKLIAEGRLEMVTG 26 (62)
Q Consensus 8 ~k~~vk~LV~~GqlEfv~G 26 (62)
.+..|+.||++|.+|.|.+
T Consensus 178 r~~~ve~LI~~G~leli~~ 196 (196)
T 2q9q_C 178 PRWKCEQLIRQGVLEHILS 196 (196)
T ss_dssp -------------------
T ss_pred EHHHHHHHHHCCceecccC
Confidence 4577999999999998753
No 76
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Probab=28.37 E-value=11 Score=24.89 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHHcCceeE
Q psy4375 4 VHPTKRNIVKKLIAEGRLEM 23 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEf 23 (62)
++..+|+.+++||++|-+-.
T Consensus 33 ~~A~sR~~IR~LIkdG~I~~ 52 (149)
T 1vq8_P 33 ADAITREDVRELVDEGAIQA 52 (149)
T ss_dssp HHCCSHHHHHHHHHTTSEEE
T ss_pred HhcccHHHHHHHHHCCCeEe
Confidence 34567899999999998754
No 77
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=28.12 E-value=96 Score=19.38 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHcCceeEE-ecceeecc
Q psy4375 6 PTKRNIVKKLIAEGRLEMV-TGGWVMTD 32 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv-~GGWvm~D 32 (62)
...|+.++.|...|-+++. +.|+.-.+
T Consensus 50 tpVREAL~~L~~eGlv~~~~~~G~~V~~ 77 (218)
T 3sxy_A 50 TPVRDALLQLATEGLVKVVPRVGFFVTD 77 (218)
T ss_dssp HHHHHHHHHHHHHTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEeCCCceEEcC
Confidence 4578999999999999998 45776654
No 78
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=28.10 E-value=26 Score=23.96 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCceeEEecceeecccccccHHHHHHHH
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL 45 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~ 45 (62)
+..+.+.|+|.+|| ||||+ |-+..|..++.++
T Consensus 53 d~~~l~~KiV~~~R-----GGyC~--ElN~Lf~~~L~~L 84 (280)
T 2vfb_A 53 SAEALADKLVDRRR-----GGYCY--EHNGLIGYVLAEL 84 (280)
T ss_dssp SHHHHHHHHTTTCC-----CBCHH--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCC-----ceEhH--HHHHHHHHHHHHC
Confidence 34567889998886 99998 6667777777766
No 79
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=27.92 E-value=64 Score=18.19 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHcCceeEEecc
Q psy4375 5 HPTKRNIVKKLIAEGRLEMVTGG 27 (62)
Q Consensus 5 ~~~~k~~vk~LV~~GqlEfv~GG 27 (62)
..+.+..++.|.+.|.|+-+-||
T Consensus 38 ~~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 38 IYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHHHCCcEEecCCC
Confidence 34578899999999999999776
No 80
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=27.78 E-value=77 Score=19.86 Aligned_cols=43 Identities=14% Similarity=0.324 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHcCceeEE---ecceeecccccc-cHHHHHHHHhhhh
Q psy4375 6 PTKRNIVKKLIAEGRLEMV---TGGWVMTDEATS-HIFAMVDQLIEET 49 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv---~GGWvm~DEA~~-~y~~~Idq~t~Gh 49 (62)
...++.+.+|.+.|=++-+ +|||.-.-.+.. ...+++.- ++|.
T Consensus 59 ~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~eItL~dVi~a-vEg~ 105 (159)
T 3lwf_A 59 HYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRT-LEGP 105 (159)
T ss_dssp HHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTTCBHHHHHHH-HSCC
T ss_pred HHHHHHHHHHHHCCeEEEecCCCCceEecCCHHHCCHHHHHHH-HcCC
Confidence 3457789999999999988 579998766544 45566654 4565
No 81
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=27.62 E-value=27 Score=23.94 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCceeEEecceeecccccccHHHHHHHH
Q psy4375 8 KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL 45 (62)
Q Consensus 8 ~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~ 45 (62)
..+.+.|+|.+|| ||||+ |-+..|..++.++
T Consensus 57 ~~~l~~KiV~~~R-----GGyC~--ElN~Lf~~~L~~L 87 (278)
T 2bsz_A 57 LAALQDKIVLGGR-----GGYCF--EHNLLFMHALKAL 87 (278)
T ss_dssp HHHHHHHHTTSCC-----CBCHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-----CeehH--HHHHHHHHHHHHC
Confidence 3467888998885 99998 5666677777765
No 82
>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} SCOP: e.18.1.1
Probab=27.48 E-value=24 Score=26.68 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCceeEEecceee--------ccc----ccccHHHHHHHHhhhh
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGWVM--------TDE----ATSHIFAMVDQLIEET 49 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGWvm--------~DE----A~~~y~~~Idq~t~Gh 49 (62)
..|+.+++++++|||...++++-. +.| |.+||...++-=..++
T Consensus 159 ~~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~l~pe~~~~~~~~y~~al~~r~~~~ 213 (542)
T 1e3d_B 159 AVQAKLKTFVASGQLGPFTNAYFLGGHEGYYMDPEANLVCTAHYLQALRAQVEVA 213 (542)
T ss_dssp HHHHHHHHHHHTSCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccCcccccCchhhccChhhhhhHHHHHHHHHHHHHHHH
Confidence 357889999999999987766641 333 3347766655444444
No 83
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=27.27 E-value=14 Score=21.42 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHHcCceeEEec
Q psy4375 5 HPTKRNIVKKLIAEGRLEMVTG 26 (62)
Q Consensus 5 ~~~~k~~vk~LV~~GqlEfv~G 26 (62)
+...+..++++|++|.|+-+-|
T Consensus 51 ~~~lk~aLk~~v~~G~l~q~Kg 72 (88)
T 2rqp_A 51 GYLLKQALKRELNRGVIKQVKG 72 (88)
T ss_dssp TTTHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHHHHhcCcEEeecC
Confidence 3456788999999999999876
No 84
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=26.81 E-value=77 Score=18.76 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHcCceeEEec-ceeecc
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTG-GWVMTD 32 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~G-GWvm~D 32 (62)
...|+.++.|.+.|-++..-| ||...+
T Consensus 50 ~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (126)
T 3by6_A 50 NTVAKAYKELEAQKVIRTIPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECS
T ss_pred HHHHHHHHHHHHCCCEEEecCCeEEEcc
Confidence 457889999999999999855 776665
No 85
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=26.51 E-value=40 Score=19.82 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHcCceeEEe
Q psy4375 5 HPTKRNIVKKLIAEGRLEMVT 25 (62)
Q Consensus 5 ~~~~k~~vk~LV~~GqlEfv~ 25 (62)
+...+..+++||.+|.|..+-
T Consensus 50 ~~~lk~aLK~~v~~G~lvq~K 70 (93)
T 1ust_A 50 DLYFNNAIKKGVEAGDFEQPK 70 (93)
T ss_dssp HHHHHHHHHHHHHTTSEECTT
T ss_pred HHHHHHHHHHHHHcCCEEecc
Confidence 344677899999999999954
No 86
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=26.40 E-value=17 Score=25.15 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCceeEEecceeecccccccHHHHHHHH
Q psy4375 8 KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL 45 (62)
Q Consensus 8 ~k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~ 45 (62)
..+.+.|||.+|| ||||+ |-+..|..++..+
T Consensus 66 ~~~l~~KiV~~~R-----GGyC~--ElN~Lf~~~L~~L 96 (293)
T 3d9w_A 66 LATLQDKLVHSRR-----GGYCY--ENAGLFAAALERL 96 (293)
T ss_dssp HHHHHHHHTSSSC-----CBCHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-----CcChH--HHHHHHHHHHHHc
Confidence 3457899999987 99998 5566666666554
No 87
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=26.17 E-value=41 Score=20.89 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.0
Q ss_pred CcCChHHHHHHHHHHHcCc
Q psy4375 2 EIVHPTKRNIVKKLIAEGR 20 (62)
Q Consensus 2 d~~~~~~k~~vk~LV~~Gq 20 (62)
|+..++.|+.|+++|++|-
T Consensus 95 d~L~~eDQekIkk~ie~g~ 113 (116)
T 3od8_A 95 SELRWDDQQKVKKTAEAGG 113 (116)
T ss_dssp GGSCHHHHHHHHHHHHC--
T ss_pred HHCCHHHHHHHHHHHHcCC
Confidence 5677889999999999984
No 88
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}
Probab=26.04 E-value=12 Score=25.53 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHHcCceeE
Q psy4375 4 VHPTKRNIVKKLIAEGRLEM 23 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEf 23 (62)
++..+|+.+++||++|-+-.
T Consensus 33 a~A~sR~~IRkLIkdGlIi~ 52 (185)
T 4a17_O 33 SMANSRASIRKLIKDGLVMK 52 (185)
T ss_dssp HHCCSHHHHHHHHHHTSEEE
T ss_pred HhcccHHHHHHHHHCCCEEe
Confidence 45678999999999997754
No 89
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=25.78 E-value=34 Score=23.95 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=21.4
Q ss_pred EEecceee--cccccccHHHHHHHHhhh--h-hhhcccc
Q psy4375 23 MVTGGWVM--TDEATSHIFAMVDQLIEE--T-FSTFSVQ 56 (62)
Q Consensus 23 fv~GGWvm--~DEA~~~y~~~Idq~t~G--h-~~~Fgv~ 56 (62)
||+||-+. ..|..+++..+.+-|.+- | ..++||+
T Consensus 104 IITGap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC 142 (301)
T 2vdj_A 104 IITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHIC 142 (301)
T ss_dssp EECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEET
T ss_pred EECCCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEc
Confidence 48999974 457788777755544332 2 5666654
No 90
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=25.33 E-value=39 Score=23.91 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=21.4
Q ss_pred EEecceee--cccccccHHHHHHHHhhh--h-hhhcccc
Q psy4375 23 MVTGGWVM--TDEATSHIFAMVDQLIEE--T-FSTFSVQ 56 (62)
Q Consensus 23 fv~GGWvm--~DEA~~~y~~~Idq~t~G--h-~~~Fgv~ 56 (62)
||+||-+. ..|..+++..+.+-|.+- | ..++||+
T Consensus 116 IITGsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC 154 (312)
T 2h2w_A 116 IITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFIC 154 (312)
T ss_dssp EECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEET
T ss_pred EECCCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEEC
Confidence 48999974 457788877755544332 2 5666654
No 91
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=25.21 E-value=11 Score=25.37 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHcCceeE
Q psy4375 4 VHPTKRNIVKKLIAEGRLEM 23 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEf 23 (62)
++..+|+.+++||++|-+-.
T Consensus 32 a~A~sR~~IRkLIkdG~I~~ 51 (176)
T 3jyw_P 32 AQANSRNAIRKLVKNGTIVK 51 (176)
T ss_dssp HHCCSHHHHHHHHHHTCSEE
T ss_pred HhhccHHHHHHHHHCCCEEe
Confidence 45567899999999997754
No 92
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=25.13 E-value=1e+02 Score=17.63 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHcCceeEEe-cceeecccccccHHHHH
Q psy4375 6 PTKRNIVKKLIAEGRLEMVT-GGWVMTDEATSHIFAMV 42 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~-GGWvm~DEA~~~y~~~I 42 (62)
+.....+++|.+.|-++..- +++..++.+...+..+.
T Consensus 37 ~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~~~~ 74 (142)
T 1on2_A 37 SSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRLV 74 (142)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHHHHH
Confidence 45677899999999999874 66777877666555443
No 93
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=24.98 E-value=1e+02 Score=17.64 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHcCceeEEe-cceeecccccccHH
Q psy4375 6 PTKRNIVKKLIAEGRLEMVT-GGWVMTDEATSHIF 39 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~-GGWvm~DEA~~~y~ 39 (62)
...|+.++.|.+.|-++... .|+.-.+-......
T Consensus 48 ~tvr~al~~L~~~Gli~~~~~~G~~V~~~~~~~~~ 82 (113)
T 3tqn_A 48 LTVSKAYQSLLDDNVIEKRRGLGMLVKAGARQRLL 82 (113)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECTTHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEecCCeEEEeCCchHHHH
Confidence 45688999999999999984 46666554443333
No 94
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=24.79 E-value=45 Score=21.83 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCceeEEeccee
Q psy4375 8 KRNIVKKLIAEGRLEMVTGGWV 29 (62)
Q Consensus 8 ~k~~vk~LV~~GqlEfv~GGWv 29 (62)
.|..+++|+++|++ .|||--|
T Consensus 16 SR~~~~~lI~~G~V-~VNG~~v 36 (243)
T 1vio_A 16 TRSQATKAIRQSAV-KINGEIV 36 (243)
T ss_dssp CHHHHHHHHHTTCE-EETTEEC
T ss_pred CHHHHHHHHHcCcE-EECCEEe
Confidence 47789999999998 5888765
No 95
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=24.77 E-value=75 Score=19.00 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCceeEEec-ceeeccc
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTG-GWVMTDE 33 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~G-GWvm~DE 33 (62)
...|+.++.|.+.|-++..-| ||...+-
T Consensus 43 ~tVr~Al~~L~~~Gli~~~~g~G~~V~~~ 71 (129)
T 2ek5_A 43 ATARNGLTLLVEAGILYKKRGIGMFVSAQ 71 (129)
T ss_dssp HHHHHHHHHHHTTTSEEEETTTEEEECTT
T ss_pred HHHHHHHHHHHHCCcEEEecCCEEEEecC
Confidence 356889999999999999855 7776654
No 96
>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB: 2q9q_B* 2eho_A*
Probab=24.71 E-value=42 Score=22.28 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=14.1
Q ss_pred HHHHHHHHHcCceeEE
Q psy4375 9 RNIVKKLIAEGRLEMV 24 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv 24 (62)
+..|+.||.+|.+|.|
T Consensus 208 y~~ve~LI~~G~velI 223 (223)
T 2e9x_D 208 YKTIAPLVASGAVQLI 223 (223)
T ss_dssp HHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCEEeC
Confidence 5789999999999975
No 97
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P
Probab=24.63 E-value=15 Score=25.12 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=16.7
Q ss_pred cCChHHHHHHHHHHHcCceeE
Q psy4375 3 IVHPTKRNIVKKLIAEGRLEM 23 (62)
Q Consensus 3 ~~~~~~k~~vk~LV~~GqlEf 23 (62)
.++..+|+.+++||++|-+-.
T Consensus 32 Ia~A~sR~~IRkLIkdG~Ii~ 52 (189)
T 3u5e_R 32 IAQANSRNAIRKLVKNGTIVK 52 (189)
T ss_dssp HHTCCSHHHHHHHHTTTSEEC
T ss_pred HHhhhhHHHHHHHHHCCCeEe
Confidence 356678999999999997743
No 98
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=29.79 E-value=16 Score=21.12 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHcCceeEEec
Q psy4375 5 HPTKRNIVKKLIAEGRLEMVTG 26 (62)
Q Consensus 5 ~~~~k~~vk~LV~~GqlEfv~G 26 (62)
+...+..++++|++|.|.-+-|
T Consensus 46 ~~~lk~aLK~~v~~G~Lvq~Kg 67 (83)
T 2lso_A 46 RTYLKYSIKALVQNDTLLQVKG 67 (83)
Confidence 3445778999999999999876
No 99
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=23.87 E-value=48 Score=21.86 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCceeEEec
Q psy4375 7 TKRNIVKKLIAEGRLEMVTG 26 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~G 26 (62)
--++.++.|++.|+.+++.+
T Consensus 148 vL~kaL~~L~~~gKaql~~~ 167 (176)
T 3cuq_C 148 TLLRALQALQQEHKAEIITV 167 (176)
T ss_dssp HHHHHHHHHHHHTSEEECCT
T ss_pred HHHHHHHHHHHcCCeEEeec
Confidence 35778999999999999964
No 100
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=23.72 E-value=1.3e+02 Score=19.30 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCceeEEec-ceeecc
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTG-GWVMTD 32 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~G-GWvm~D 32 (62)
...|+.++.|...|-++..-| |++-.+
T Consensus 66 tpVREAL~~L~~eGlv~~~~~~G~~V~~ 93 (239)
T 2hs5_A 66 NTVREAFQILIEDRLVAHELNRGVFVRV 93 (239)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEeCCCeeEEeC
Confidence 457899999999999999854 665544
No 101
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O
Probab=23.59 E-value=14 Score=25.15 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHHcCceeE
Q psy4375 4 VHPTKRNIVKKLIAEGRLEM 23 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEf 23 (62)
++..+|+.+++||++|-+-.
T Consensus 33 a~A~sR~~IRkLIkdG~Ii~ 52 (185)
T 4a1a_O 33 SMANSRASIRKLIKDGLVMK 52 (185)
T ss_dssp HHCCSHHHHHHHHHHTSEEE
T ss_pred HhcccHHHHHHHHHCCCeee
Confidence 45667899999999998754
No 102
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=23.57 E-value=14 Score=25.62 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHHcCceeE
Q psy4375 4 VHPTKRNIVKKLIAEGRLEM 23 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEf 23 (62)
++..+|+.+++||++|-+-.
T Consensus 33 a~AnsRq~IRkLIkdGlIi~ 52 (209)
T 3iz5_T 33 SMANSRQNIRKLVKDGFIIR 52 (209)
T ss_dssp HHCCSHHHHHHHHHHTSEEE
T ss_pred HhcccHHHHHHHHHCCCeEe
Confidence 45678999999999997754
No 103
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=23.07 E-value=88 Score=19.87 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCceeE--Eec---ceeecc
Q psy4375 6 PTKRNIVKKLIAEGRLEM--VTG---GWVMTD 32 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEf--v~G---GWvm~D 32 (62)
...|+.++.|...|-+++ ..| |+.-.+
T Consensus 43 tpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~ 74 (239)
T 2di3_A 43 SSLREALRVLEALGTISTATGSGPRSGTIITA 74 (239)
T ss_dssp HHHHHHHHHHHHHTSEECCSTTSGGGCCEECC
T ss_pred HHHHHHHHHHHHCCCeEeecccCCCCCceeeC
Confidence 457899999999999999 644 766544
No 104
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=22.53 E-value=57 Score=20.01 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCceeEEeccee
Q psy4375 8 KRNIVKKLIAEGRLEMVTGGWV 29 (62)
Q Consensus 8 ~k~~vk~LV~~GqlEfv~GGWv 29 (62)
.|..+++|+..|++ .|||-.+
T Consensus 23 SRs~a~~li~~G~V-~VNG~~v 43 (133)
T 1dm9_A 23 TRALAREMIEGGKV-HYNGQRS 43 (133)
T ss_dssp SHHHHHHHHHTTCE-EETTEEC
T ss_pred CHHHHHHHHHCCcE-EECCEEc
Confidence 57789999999987 5788654
No 105
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=22.33 E-value=49 Score=17.89 Aligned_cols=32 Identities=3% Similarity=0.185 Sum_probs=26.1
Q ss_pred ecccccccHHHHHHHHhhhh---hhhcccccCCCC
Q psy4375 30 MTDEATSHIFAMVDQLIEET---FSTFSVQSSKRP 61 (62)
Q Consensus 30 m~DEA~~~y~~~Idq~t~Gh---~~~Fgv~p~~~~ 61 (62)
|++|--..|.+.-...-+-| +..+..+|++++
T Consensus 44 ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~~ 78 (80)
T 1gt0_D 44 LSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKT 78 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCCC
Confidence 56666778888888888888 888899998875
No 106
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=22.20 E-value=34 Score=21.63 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCceeEEeccee
Q psy4375 7 TKRNIVKKLIAEGRLEMVTGGWV 29 (62)
Q Consensus 7 ~~k~~vk~LV~~GqlEfv~GGWv 29 (62)
+.|+.+.+|+++|++|=.-=-|-
T Consensus 2 ~~~~~I~~Ll~~g~~eeAf~~aL 24 (139)
T 2vxg_A 2 AMGDSIKQLLMAGQINKAFHQAL 24 (139)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCHHHHHHHHH
Confidence 35677999999999875444444
No 107
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=21.90 E-value=1.1e+02 Score=19.16 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHH-cCceeEEecceeeccc
Q psy4375 6 PTKRNIVKKLIA-EGRLEMVTGGWVMTDE 33 (62)
Q Consensus 6 ~~~k~~vk~LV~-~GqlEfv~GGWvm~DE 33 (62)
+..++.++++++ .-.+-+++||=-..+.
T Consensus 53 ~~i~~al~~a~~~~~DlVittGG~s~g~~ 81 (164)
T 3pzy_A 53 SPVGEALRKAIDDDVDVILTSGGTGIAPT 81 (164)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 677888999886 5689999999776553
No 108
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=21.83 E-value=60 Score=21.73 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.1
Q ss_pred CcCChHHHHHHHHHHHcC
Q psy4375 2 EIVHPTKRNIVKKLIAEG 19 (62)
Q Consensus 2 d~~~~~~k~~vk~LV~~G 19 (62)
+..++++++.|++.|++|
T Consensus 80 ~~l~~~~~~al~~~V~~G 97 (252)
T 1t0b_A 80 DEVKDEVVERVHRRVLEG 97 (252)
T ss_dssp GGSCHHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHHcC
Confidence 346788999999999997
No 109
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=21.17 E-value=28 Score=23.88 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCceeEEecceeecccccccHHHHHHHH
Q psy4375 9 RNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL 45 (62)
Q Consensus 9 k~~vk~LV~~GqlEfv~GGWvm~DEA~~~y~~~Idq~ 45 (62)
.+.+.|+|.+|| ||||+ |-+..|..++..+
T Consensus 57 ~~l~~KiV~~~R-----GGyC~--ElN~Lf~~~L~~L 86 (284)
T 1e2t_A 57 TALEEKLLYARR-----GGYCF--ELNGLFERALRDI 86 (284)
T ss_dssp THHHHHHTTTCC-----CBCHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCC-----cEEhH--HHHHHHHHHHHHC
Confidence 357888998887 99998 5666666666665
No 110
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=21.16 E-value=1.2e+02 Score=17.82 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHcCceeEEec-ceeeccccc
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTG-GWVMTDEAT 35 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~G-GWvm~DEA~ 35 (62)
...|+.++.|.+.|-++...| |+.-.+-..
T Consensus 50 ~tvr~Al~~L~~~G~i~~~~~~G~~V~~~~~ 80 (126)
T 3ic7_A 50 NTVMRSYEYLQSQEVIYNKRGIGFFVASGAK 80 (126)
T ss_dssp GGGHHHHHHHHTTTSEEEETTTEEEECTTHH
T ss_pred HHHHHHHHHHHHCCcEEEEcCCccEEccCcH
Confidence 457889999999999999854 666655443
No 111
>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, phospho lyase, secreted, virulence, structural genomics; 2.70A {Shigella flexneri}
Probab=21.02 E-value=48 Score=23.10 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=25.7
Q ss_pred eeecccccccHHHHH----HHHhhhh---hhhcccccCCCCC
Q psy4375 28 WVMTDEATSHIFAMV----DQLIEET---FSTFSVQSSKRPP 62 (62)
Q Consensus 28 Wvm~DEA~~~y~~~I----dq~t~Gh---~~~Fgv~p~~~~~ 62 (62)
++-+|-+++.|.+-. .++++-. +.+=||.|..||-
T Consensus 135 Y~Kpd~eds~Ys~~~l~k~r~fi~~iE~~L~~agi~pg~~P~ 176 (218)
T 3i0u_A 135 YVKSDQECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPA 176 (218)
T ss_dssp EEECCSSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCCCCT
T ss_pred EecCccccccCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Confidence 588899988887762 3333333 8888999999983
No 112
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=20.70 E-value=66 Score=19.68 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=15.9
Q ss_pred CcCChHHHHHHHHHHHcCc
Q psy4375 2 EIVHPTKRNIVKKLIAEGR 20 (62)
Q Consensus 2 d~~~~~~k~~vk~LV~~Gq 20 (62)
|+..++.|+.|+++|++++
T Consensus 76 ~~L~~eDQ~~I~~~i~~~~ 94 (114)
T 1v9x_A 76 ESLRWEDQQKIRKYVESGA 94 (114)
T ss_dssp TTSCHHHHHHHHHHHSSCS
T ss_pred HHCCHHHHHHHHHHHHHcC
Confidence 6678888999999998865
No 113
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=20.18 E-value=42 Score=21.98 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.7
Q ss_pred ecccccccHHHHHHHHhhhh
Q psy4375 30 MTDEATSHIFAMVDQLIEET 49 (62)
Q Consensus 30 m~DEA~~~y~~~Idq~t~Gh 49 (62)
|.-+|+..|...|.+.+..+
T Consensus 11 mg~~at~~~~~~i~~~~~~~ 30 (231)
T 3ojc_A 11 MSWESTIPYYRMINQHVKAQ 30 (231)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHh
Confidence 88999999999999998755
No 114
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.17 E-value=1e+02 Score=19.86 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHcCceeEEecceeecc
Q psy4375 6 PTKRNIVKKLIAEGRLEMVTGGWVMTD 32 (62)
Q Consensus 6 ~~~k~~vk~LV~~GqlEfv~GGWvm~D 32 (62)
+..++.++++++.-.+-|++||=-..+
T Consensus 50 ~~I~~~l~~a~~~~DlVittGG~g~~~ 76 (172)
T 3kbq_A 50 DEIGWAFRVALEVSDLVVSSGGLGPTF 76 (172)
T ss_dssp HHHHHHHHHHHHHCSEEEEESCCSSST
T ss_pred HHHHHHHHHHHhcCCEEEEcCCCcCCc
Confidence 566788999998899999999876654
No 115
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=20.12 E-value=51 Score=21.40 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCceeE--Eecceeecccc-------cccHHHHHHHHhhh
Q psy4375 9 RNIVKKLIAEGRLEM--VTGGWVMTDEA-------TSHIFAMVDQLIEE 48 (62)
Q Consensus 9 k~~vk~LV~~GqlEf--v~GGWvm~DEA-------~~~y~~~Idq~t~G 48 (62)
+..|++||++|+|-- ++|.|.-+-.. ..+...+|.-|..|
T Consensus 45 ~srV~~LIr~G~L~AVr~Gr~~rVP~~f~~~~g~vv~~L~G~l~vL~D~ 93 (148)
T 2kfs_A 45 VSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSGQVVKSLPGLLTILHDG 93 (148)
T ss_dssp HHHHHHHHHTTSCCCEEETTEEEEEGGGBCTTSCBCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCceEEEECCEEEecHHHhccCCCccCCCccHHHHHhcC
Confidence 568999999999976 47778644333 45666666666443
No 116
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.05 E-value=18 Score=24.77 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHcCceeE
Q psy4375 4 VHPTKRNIVKKLIAEGRLEM 23 (62)
Q Consensus 4 ~~~~~k~~vk~LV~~GqlEf 23 (62)
++..+|+.+++||++|-+-.
T Consensus 33 ~~A~sR~~IR~LIkdG~I~~ 52 (196)
T 2zkr_p 33 ANANSRQQIRKLIKDGLIIR 52 (196)
T ss_dssp HHCCSHHHHHHHHHHTSEEE
T ss_pred HHhhhHHHHHHHHHCCCeEe
Confidence 34567899999999998754
Done!