RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4375
         (62 letters)



>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 330

 Score = 55.8 bits (134), Expect = 6e-12
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 1   MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
                   + IV++L+ +GRLE   GGWVM DEAT+H  A++DQ+  
Sbjct: 78  WRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTL 124


>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 381

 Score = 53.1 bits (127), Expect = 6e-11
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 1   MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
              +   K+  +K ++  G+LE VTGGWVM DEA SH   ++ QL E
Sbjct: 108 YHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTE 154


>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
           domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 310

 Score = 33.1 bits (75), Expect = 9e-04
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 1   MEIVHPTKRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQL 45
           +E   P   ++++ LI  G+LE+V  G+     A       + Q+
Sbjct: 58  IEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQI 102


>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 415

 Score = 25.7 bits (56), Expect = 0.38
 Identities = 5/26 (19%), Positives = 17/26 (65%)

Query: 9   RNIVKKLIAEGRLEMVTGGWVMTDEA 34
           ++I+ +++ +   +++  GW +T+E 
Sbjct: 369 KSIIAEVLIDKYDDILQAGWEVTEEE 394


>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 23.3 bits (49), Expect = 2.4
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 8   KRNIVKKLIAEGRLEMVTGGWVMTDEATSHIFAMVDQLIE 47
              + +K+   G L MV  G     +  + I + ++ +IE
Sbjct: 826 GNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIE 865


>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 74

 Score = 22.0 bits (47), Expect = 4.7
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 14 KLIAEGRLEMVTGG 27
           L  EGRL+ +  G
Sbjct: 56 TLADEGRLKYIANG 69


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 22.1 bits (47), Expect = 5.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 15  LIAEGRLEMVTGGWVMTDEATSHI 38
           L   G L  VTGG  ++D A  H+
Sbjct: 267 LTFNGGLNPVTGGLWLSDTAHHHL 290


>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 98

 Score = 21.6 bits (46), Expect = 9.1
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 23 MVTGGWVMTDEATSHIFAMVDQLIEE 48
          M++G    T  AT+    + DQ+  +
Sbjct: 1  MMSGAPSATQPATAETQHIADQVRSQ 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 215,765
Number of extensions: 7045
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 8
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)