BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4377
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VNA5|PSB4_DROME Proteasome subunit beta type-4 OS=Drosophila melanogaster
GN=Prosbeta7 PE=2 SV=1
Length = 268
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 45/57 (78%)
Query: 25 VFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81
V G+++D GV+LAAD+LVS+ +A + N +R+ KVN++ILLGG +FAD+Q ++ ++
Sbjct: 60 VLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNI 116
>sp|P34067|PSB4_RAT Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1
SV=2
Length = 263
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 10 AKPAVQPPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGG 68
A+P + P+ + SV G++FD GV++AAD L S+ LA F N RI++VN+S +LG
Sbjct: 39 ARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGAS 98
Query: 69 NNFADLQYLQ 78
++AD QYL+
Sbjct: 99 GDYADFQYLK 108
>sp|P28024|PSB4_XENLA Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis
GN=psmb4 PE=2 SV=2
Length = 242
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 10 AKPAVQPPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGG 68
A P P+ + SV G++FD GV++AAD L S+ LA F N RI+KVNE+ +LG
Sbjct: 18 AGPVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGAS 77
Query: 69 NNFADLQYLQDSV 81
++AD QYL+ +
Sbjct: 78 GDYADYQYLKQVI 90
>sp|P99026|PSB4_MOUSE Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1
Length = 264
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 1 MCDKADCKKAKPAVQPPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKV 59
+ D A P + P+ + SV G++FD GV++AAD L S+ LA F N RI++V
Sbjct: 31 LMDPASAPCEGPITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRV 90
Query: 60 NESILLGGGNNFADLQYLQ 78
N+S +LG ++AD QYL+
Sbjct: 91 NDSTMLGASGDYADFQYLK 109
>sp|Q29384|PSB4_PIG Proteasome subunit beta type-4 (Fragment) OS=Sus scrofa GN=PSMB4
PE=2 SV=1
Length = 154
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 1 MCDKADCKKAKPAVQPPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKV 59
+ D P + P+ + SV G++F+ GV++AAD L S+ LA F N RI++V
Sbjct: 31 IVDPXSVLYGSPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRV 90
Query: 60 NESILLGGGNNFADLQYLQ 78
N S +LG ++AD QYL+
Sbjct: 91 NNSTMLGASGDYADFQYLK 109
>sp|Q3T108|PSB4_BOVIN Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1
Length = 264
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 12 PAVQPPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNN 70
P + P+ + SV GL+F+ GV++AAD L S+ LA F N RI++VN S +LG +
Sbjct: 42 PITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGD 101
Query: 71 FADLQYLQ 78
+AD QYL+
Sbjct: 102 YADFQYLK 109
>sp|P28070|PSB4_HUMAN Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4
Length = 264
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 3 DKADCKKAKPAVQPPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNE 61
D A P + P+ + SV G++F+ GV++AAD L S+ LA F N RI++VN
Sbjct: 33 DPASALYRGPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNN 92
Query: 62 SILLGGGNNFADLQYLQ 78
S +LG ++AD QYL+
Sbjct: 93 STMLGASGDYADFQYLK 109
>sp|Q9USQ9|PSB7_SCHPO Probable proteasome subunit beta type-7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC577.10 PE=3 SV=1
Length = 262
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 12 PAVQPPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNN 70
P + QP+ + +SV L+F GV++AAD+L S+ LA F + +R+ KV ++ ++G G +
Sbjct: 32 PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGD 91
Query: 71 FADLQYLQ 78
+D Q +Q
Sbjct: 92 ISDYQQIQ 99
>sp|P30657|PSB7_YEAST Proteasome subunit beta type-7 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PRE4 PE=1 SV=1
Length = 266
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 10 AKPAVQPPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGG 68
A P V QP+ + SV +++D GV++AAD+L S+ L F +R++ V ++ ++G
Sbjct: 28 ASPMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGIS 87
Query: 69 NNFADLQYLQ 78
+ +D+Q+++
Sbjct: 88 GDISDMQHIE 97
>sp|Q8SS01|PSB7_ENCCU Probable proteasome subunit beta type-7 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=PRE4 PE=1 SV=1
Length = 235
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
++ +V ++ G+++ AD+ S+ LA QRI KV + LLG +D+QYL
Sbjct: 14 VTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDMQYL 71
>sp|Q556Q0|PSB4_DICDI Proteasome subunit beta type-4 OS=Dictyostelium discoideum
GN=psmB4-1 PE=3 SV=1
Length = 259
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 36/58 (62%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81
SV +++D+GV++ +D L+S+ LA F + +R+ K ++G ++D Q + +++
Sbjct: 46 SVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSITNTL 103
>sp|B1L6X8|PSB2_KORCO Proteasome subunit beta 2 OS=Korarchaeum cryptofilum (strain
OPF8) GN=psmB2 PE=3 SV=1
Length = 198
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
+ A+ GL+FD GV+LAAD VS+ G L +A+++ +NE + + D Q L D
Sbjct: 1 MVLATALGLRFDGGVVLAADRRVSYNGFILSKSARKVFLINERVGVSTAGLPGDFQELVD 60
>sp|Q74MP5|PSB_NANEQ Proteasome subunit beta OS=Nanoarchaeum equitans (strain Kin4-M)
GN=psmB PE=3 SV=1
Length = 196
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 22 CASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
++ G++ GV+LA+D S + AQ+I+ + + ILL G ADLQ++
Sbjct: 1 MTTIIGIKARDGVVLASDKQASMGNIVEDKRAQKIIPITDYILLAGSGTVADLQHI 56
>sp|Q980L4|PSB1_SULSO Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ GL+ + G++LA++ +S+ G L A+++ K+N+ ++ G G + DLQ L
Sbjct: 6 ATAVGLKVNDGIVLASERRLSYGGYVLSKQAKKVYKINKFLMAGAG-IYGDLQTL 59
>sp|D0KRX1|PSB1_SULS9 Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain
98/2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ GL+ + G++LA++ +S+ G L A+++ K+N+ ++ G G + DLQ L
Sbjct: 6 ATAVGLKVNDGIVLASERRLSYGGYVLSKQAKKVYKINKFLMAGAG-IYGDLQTL 59
>sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1
Length = 272
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 11 KPAVQPPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNN 70
K AVQ +P + F GV++AADS S G + ++I+++N +L
Sbjct: 44 KEAVQMVKPAKGTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGG 103
Query: 71 FADLQY 76
AD Q+
Sbjct: 104 AADCQF 109
>sp|C3N7K2|PSB2_SULIY Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ GL+ + G++LA++ +S+ G L A+++ K+ + L+ G + DLQ L
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGK-FLMAGAGIYGDLQTL 59
>sp|C3MY41|PSB2_SULIM Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ GL+ + G++LA++ +S+ G L A+++ K+ + L+ G + DLQ L
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGK-FLMAGAGIYGDLQTL 59
>sp|C3MRE5|PSB2_SULIL Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ GL+ + G++LA++ +S+ G L A+++ K+ + L+ G + DLQ L
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGK-FLMAGAGIYGDLQTL 59
>sp|C4KIR0|PSB2_SULIK Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=psmB2 PE=3 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ GL+ + G++LA++ +S+ G L A+++ K+ + L+ G + DLQ L
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGK-FLMAGAGIYGDLQTL 59
>sp|D2PDG6|PSB2_SULID Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain
L.D.8.5 / Lassen #2) GN=psmB2 PE=3 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ GL+ + G++LA++ +S+ G L A+++ K+ + L+ G + DLQ L
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGK-FLMAGAGIYGDLQTL 59
>sp|C3MZI0|PSB2_SULIA Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain
M.16.27) GN=psmB2 PE=3 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ GL+ + G++LA++ +S+ G L A+++ K+ + L+ G + DLQ L
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGK-FLMAGAGIYGDLQTL 59
>sp|C3NFX2|PSB1_SULIN Proteasome subunit beta 1 OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ GL+ + G++LA++ +S+ G L A+++ K+ + L+ G + DLQ L
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGK-FLMAGAGIYGDLQTL 59
>sp|Q9LIP2|PSB5B_ARATH Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2
PE=1 SV=1
Length = 273
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 11 KPAVQPPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNN 70
K AV+ +P + F GV++AADS S G + ++I+++N +L
Sbjct: 46 KKAVEMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGG 105
Query: 71 FADLQY 76
AD Q+
Sbjct: 106 AADCQF 111
>sp|C6A3R1|PSB2_THESM Proteasome subunit beta 2 OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=psmB2 PE=3 SV=1
Length = 199
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
+ + G++ GV+LAAD+ S + + N ++I+ + + I + + DLQ L
Sbjct: 5 TGTTTVGIKLKDGVVLAADTQASLDHMVETLNIKKILPITDRIAITTAGSVGDLQAL 61
>sp|Q9YES4|PSB1_AERPE Proteasome subunit beta 1 OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB1
PE=3 SV=2
Length = 203
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADL 74
+ A+ G++ + GV+LAAD +S+ G L N ++I +N+ I + + D+
Sbjct: 3 FAGATALGIRVEDGVVLAADKRMSYGGFILSRNFKKIFVINDRIGIAFAGLYGDM 57
>sp|Q8U4C9|PSB1_PYRFU Proteasome subunit beta 1 OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=psmB1 PE=3 SV=1
Length = 196
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
+ + G++ GV+LAAD+ S + + N ++I+ + + I + + D+Q L
Sbjct: 5 TGTTTVGIKVKDGVVLAADTQASLDHMVETLNIKKIIPITDRIAITTAGSVGDVQML 61
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 14 VQPPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFAD 73
+ + L + GL GV+LAAD+ S + N +I K++E + + G + D
Sbjct: 2 LHLKEKLKGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGD 61
Query: 74 L 74
+
Sbjct: 62 I 62
>sp|B8D673|PSB1_DESK1 Proteasome subunit beta 1 OS=Desulfurococcus kamchatkensis
(strain 1221n / DSM 18924) GN=psmB1 PE=3 SV=1
Length = 202
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
+ GL+ GV+LA++ ++++G L NA++I + I +G D+ +L
Sbjct: 8 GTAIGLKTSEGVVLASEKRLTYDGFVLSRNARKIHMITNHIGVGFAGLMGDVNFL 62
>sp|Q9V247|PSB1_PYRAB Proteasome subunit beta 1 OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=psmB1 PE=3 SV=1
Length = 197
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
+ + G++ GV+LAAD+ S + + N ++I+ + + I + + D+Q +
Sbjct: 5 TGTTTVGIRVKDGVILAADTQASLDHMVETLNIRKIIPITDRIAITTAGSVGDVQMI 61
>sp|O57983|PSB1_PYRHO Proteasome subunit beta 1 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB1 PE=3 SV=1
Length = 197
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
+ + G++ GV+LAAD+ S + + N ++I+ + + I + + D+Q +
Sbjct: 5 TGTTTVGIKVKDGVILAADTQASLDHMVETLNIRKIIPITDRIAITTAGSVGDVQMI 61
>sp|Q5JHL8|PSB2_PYRKO Proteasome subunit beta 2 OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=psmB2 PE=3 SV=1
Length = 199
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
+ + G++ GV+LAAD+ S + + N ++I+ + + I + + D+Q L
Sbjct: 5 TGTTTVGIRTKEGVVLAADTQASLDHMVETLNIRKILPITDRIAITTAGSVGDVQAL 61
>sp|A3MXQ6|PSB2_PYRCJ Proteasome subunit beta 2 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=psmB2 PE=3 SV=1
Length = 203
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ G++ GV+LAA+ VS+ L +++ VN+ + + AD+Q L
Sbjct: 9 ATAVGIKTKEGVVLAAEKRVSYGFYTLSTAGKKVFIVNDRLAIASAGIIADMQTL 63
>sp|A8AA46|PSB1_IGNH4 Proteasome subunit beta 1 OS=Ignicoccus hospitalis (strain KIN4/I
/ DSM 18386 / JCM 14125) GN=psmB1 PE=3 SV=1
Length = 198
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQ 75
A+ G++ GV+LAA+ +S+ G + A+++ KV + + + +AD+Q
Sbjct: 6 ATAVGIKVKDGVVLAAERRMSYGGFIMSKAARKVFKVGDRMGMACAGLYADMQ 58
>sp|Q975U8|PSB1_SULTO Proteasome subunit beta 1 OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=psmB1 PE=3 SV=1
Length = 197
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQ 78
A+ G++ + G++LAA+ +S+ G L +A+++ K+ + G G D+Q L
Sbjct: 6 ATALGIKLNDGIILAAERRLSYGGFVLSRSAKKVFKIGRFGIAGAG-IMGDIQTLT 60
>sp|Q2KY83|TRMD_BORA1 tRNA (guanine-N(1)-)-methyltransferase OS=Bordetella avium (strain
197N) GN=trmD PE=3 SV=1
Length = 270
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 16 PPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFC 51
PP P++ S G ++D+G AA L S +GL L C
Sbjct: 84 PPAPVALLSPVGRRYDQG---AAQQLASSDGLVLIC 116
>sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1
PE=1 SV=2
Length = 246
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQ 75
S+ +++ GVL+A+D S+ + N +R+ + + LLG +D Q
Sbjct: 33 SIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQ 84
>sp|C5A2D5|PSB2_THEGJ Proteasome subunit beta 2 OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=psmB2 PE=3 SV=1
Length = 200
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
+ + G++ GV+LAAD+ S + N ++I+ + + I + + D+Q L
Sbjct: 6 TGTTTVGIKVKEGVVLAADTQASLGNMVETLNIRKILPITDRIAITTAGSVGDVQAL 62
>sp|A2BN24|PSB1_HYPBU Proteasome subunit beta 1 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB1 PE=3 SV=1
Length = 204
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQ 75
+ A+ G++ V+LAA+ VS+ G + A+++ K+ + + L FADLQ
Sbjct: 7 TGATAVGIRGAGYVVLAAEKRVSYGGFIISKTARKVYKITDYLGLALAGLFADLQ 61
>sp|O14497|ARI1A_HUMAN AT-rich interactive domain-containing protein 1A OS=Homo sapiens
GN=ARID1A PE=1 SV=3
Length = 2285
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 5 ADCKKAKPAVQPPQPLSCASVFGLQ 29
AD KK++P +QPP P S+ G Q
Sbjct: 1121 ADSKKSQPKIQPPSPAGSGSMQGPQ 1145
>sp|A2BH40|ARI1A_MOUSE AT-rich interactive domain-containing protein 1A OS=Mus musculus
GN=Arid1a PE=1 SV=1
Length = 2283
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 5 ADCKKAKPAVQPPQPLSCASVFGLQ 29
AD KK++P +QPP P S+ G Q
Sbjct: 1122 ADSKKSQPKIQPPSPAGSGSMQGPQ 1146
>sp|B1YDJ0|PSB2_PYRNV Proteasome subunit beta 2 OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=psmB2 PE=3 SV=1
Length = 203
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ G++ GV+LAA+ VS+ L +++ VN+ + + AD+Q L
Sbjct: 9 ATAVGIRAKDGVVLAAEKRVSYGFYTLSTAGKKVFIVNDKLAIASAGIIADMQAL 63
>sp|Q9V0N9|PSB2_PYRAB Proteasome subunit beta 2 OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=psmB2 PE=3 SV=1
Length = 207
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 14 VQPPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFAD 73
+Q + + G+ GV+LAAD S + N +I K++E + + G + D
Sbjct: 2 LQLTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGD 61
Query: 74 L 74
+
Sbjct: 62 I 62
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I
/ DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 18 QPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
+ L + G++ ++ V+LAAD + + ++IVK+++ + + AD Q L
Sbjct: 9 RALKGTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVL 68
Query: 78 QD 79
D
Sbjct: 69 AD 70
>sp|A1RSJ8|PSB1_PYRIL Proteasome subunit beta 1 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB1 PE=3 SV=1
Length = 203
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
A+ G++ GV+LAA+ VS+ L +++ +N+ + + AD+Q L
Sbjct: 9 ATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFIINDKLAIASAGIIADMQTL 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,033,832
Number of Sequences: 539616
Number of extensions: 874270
Number of successful extensions: 1764
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1714
Number of HSP's gapped (non-prelim): 52
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)