Query psy4377
Match_columns 81
No_of_seqs 103 out of 857
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 23:59:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0185|consensus 99.9 6.3E-22 1.4E-26 143.3 6.2 69 13-81 32-100 (256)
2 PRK05456 ATP-dependent proteas 99.8 9E-20 2E-24 126.3 7.1 60 22-81 1-61 (172)
3 cd03757 proteasome_beta_type_1 99.8 1.2E-19 2.6E-24 127.5 7.5 66 16-81 1-67 (212)
4 KOG0174|consensus 99.8 2.3E-19 5.1E-24 127.5 5.4 68 14-81 11-78 (224)
5 TIGR03692 ATP_dep_HslV ATP-dep 99.8 9E-19 1.9E-23 121.6 6.9 59 23-81 1-60 (171)
6 cd01913 protease_HslV Protease 99.8 1E-18 2.2E-23 121.4 7.0 59 23-81 1-60 (171)
7 PTZ00488 Proteasome subunit be 99.8 2.1E-18 4.5E-23 124.6 8.1 65 17-81 34-98 (247)
8 cd03760 proteasome_beta_type_4 99.7 3.2E-18 6.9E-23 118.6 7.1 61 21-81 1-61 (197)
9 cd03759 proteasome_beta_type_3 99.7 6.6E-18 1.4E-22 117.1 7.2 61 21-81 2-62 (195)
10 COG0638 PRE1 20S proteasome, a 99.7 1.4E-17 3.1E-22 119.4 7.1 61 21-81 29-89 (236)
11 TIGR03690 20S_bact_beta protea 99.7 1.9E-17 4.2E-22 116.9 7.3 61 21-81 1-61 (219)
12 cd03762 proteasome_beta_type_6 99.7 2E-17 4.3E-22 113.5 7.0 59 23-81 1-59 (188)
13 TIGR03634 arc_protsome_B prote 99.7 2.4E-17 5.2E-22 112.7 6.9 59 22-80 1-59 (185)
14 cd03761 proteasome_beta_type_5 99.7 3.4E-17 7.3E-22 113.0 7.0 59 23-81 1-59 (188)
15 KOG0173|consensus 99.7 2.4E-17 5.2E-22 120.4 5.9 79 2-80 17-95 (271)
16 cd03758 proteasome_beta_type_2 99.7 4.9E-17 1.1E-21 112.7 7.1 59 23-81 2-60 (193)
17 cd03763 proteasome_beta_type_7 99.7 6.8E-17 1.5E-21 111.2 7.0 59 23-81 1-59 (189)
18 PF00227 Proteasome: Proteasom 99.7 8.3E-17 1.8E-21 109.1 6.5 62 20-81 2-64 (190)
19 cd03750 proteasome_alpha_type_ 99.7 6.3E-17 1.4E-21 114.5 5.5 61 20-81 25-85 (227)
20 KOG0179|consensus 99.7 9.6E-17 2.1E-21 115.1 6.3 71 11-81 17-88 (235)
21 PTZ00246 proteasome subunit al 99.7 7.6E-17 1.7E-21 115.8 5.6 60 21-80 30-89 (253)
22 cd03764 proteasome_beta_archea 99.7 1.6E-16 3.4E-21 109.0 6.8 58 23-80 1-58 (188)
23 TIGR03633 arc_protsome_A prote 99.7 1.4E-16 3.1E-21 112.2 6.0 61 19-80 26-86 (224)
24 cd03752 proteasome_alpha_type_ 99.7 1.6E-16 3.4E-21 111.4 5.6 62 20-81 27-88 (213)
25 cd03756 proteasome_alpha_arche 99.7 1.7E-16 3.7E-21 111.0 5.7 61 20-81 26-86 (211)
26 cd01911 proteasome_alpha prote 99.6 3.1E-16 6.8E-21 109.4 6.7 61 20-81 25-85 (209)
27 cd01912 proteasome_beta protea 99.6 5.6E-16 1.2E-20 105.7 6.9 58 23-80 1-58 (189)
28 cd03753 proteasome_alpha_type_ 99.6 3.7E-16 8.1E-21 109.4 5.7 60 20-80 25-84 (213)
29 cd03751 proteasome_alpha_type_ 99.6 3E-16 6.6E-21 110.6 5.1 60 20-80 28-87 (212)
30 cd01906 proteasome_protease_Hs 99.6 8.9E-16 1.9E-20 103.5 7.0 59 23-81 1-59 (182)
31 PRK03996 proteasome subunit al 99.6 1.2E-15 2.6E-20 108.7 7.0 60 20-80 34-93 (241)
32 cd03755 proteasome_alpha_type_ 99.6 8.8E-16 1.9E-20 107.2 5.6 60 20-80 25-84 (207)
33 cd03754 proteasome_alpha_type_ 99.6 2.7E-15 5.8E-20 105.7 5.7 60 21-81 28-87 (215)
34 cd03749 proteasome_alpha_type_ 99.6 2.7E-15 5.9E-20 105.3 5.5 59 20-81 25-83 (211)
35 KOG0175|consensus 99.6 3.5E-15 7.6E-20 109.5 4.7 63 19-81 68-130 (285)
36 cd03765 proteasome_beta_bacter 99.5 1.8E-13 3.9E-18 98.8 7.0 57 23-80 1-61 (236)
37 TIGR03691 20S_bact_alpha prote 99.4 2.5E-13 5.4E-18 97.2 5.8 52 21-80 26-77 (228)
38 KOG0177|consensus 99.4 5.1E-13 1.1E-17 94.5 4.4 59 22-80 1-59 (200)
39 cd01901 Ntn_hydrolase The Ntn 99.3 1.2E-11 2.7E-16 79.6 6.9 58 23-80 1-58 (164)
40 KOG0176|consensus 99.3 4E-12 8.7E-17 91.1 3.6 58 21-79 33-90 (241)
41 KOG0180|consensus 99.0 4.5E-10 9.8E-15 79.2 5.2 61 21-81 7-67 (204)
42 KOG0184|consensus 99.0 7.3E-10 1.6E-14 80.5 5.7 59 21-80 33-91 (254)
43 KOG0178|consensus 98.7 9.6E-09 2.1E-13 74.3 3.1 61 20-80 29-89 (249)
44 COG5405 HslV ATP-dependent pro 98.6 3E-08 6.5E-13 69.2 3.3 60 21-80 3-63 (178)
45 KOG0183|consensus 98.4 1.5E-07 3.3E-12 68.2 1.9 64 10-79 23-86 (249)
46 KOG0181|consensus 98.3 2.6E-07 5.6E-12 66.4 1.3 59 20-79 30-88 (233)
47 KOG0863|consensus 98.2 5.4E-07 1.2E-11 66.0 2.3 65 9-81 24-88 (264)
48 KOG0182|consensus 97.1 0.0014 3.1E-08 47.8 5.6 58 21-79 35-92 (246)
49 COG3484 Predicted proteasome-t 86.9 0.92 2E-05 33.3 3.5 59 22-81 1-63 (255)
50 PF09894 DUF2121: Uncharacteri 76.2 2.4 5.1E-05 30.4 2.3 21 22-42 1-21 (194)
51 PF13734 Inhibitor_I69: Spi pr 51.5 12 0.00026 23.8 1.8 19 25-43 45-63 (96)
52 COG4079 Uncharacterized protei 51.2 13 0.00028 28.0 2.2 21 22-42 1-21 (293)
53 COG0279 GmhA Phosphoheptose is 31.7 32 0.0007 24.4 1.6 19 63-81 45-63 (176)
54 PRK07105 pyridoxamine kinase; 27.4 60 0.0013 23.2 2.4 27 53-79 4-30 (284)
55 COG4942 Membrane-bound metallo 23.9 62 0.0013 25.8 2.1 28 21-50 330-357 (420)
56 PRK10719 eutA reactivating fac 20.4 1.7E+02 0.0037 23.7 3.9 41 22-62 155-195 (475)
No 1
>KOG0185|consensus
Probab=99.86 E-value=6.3e-22 Score=143.26 Aligned_cols=69 Identities=35% Similarity=0.581 Sum_probs=66.0
Q ss_pred cCCCCCCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 13 AVQPPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 13 ~~~~~~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+...+|++|||||||++|+||||||||++.|||++.++++++|++++++|+++|+||+.||+|+|.+.|
T Consensus 32 qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L 100 (256)
T KOG0185|consen 32 QRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVL 100 (256)
T ss_pred ccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999999999999999999875
No 2
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.80 E-value=9e-20 Score=126.26 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=58.3
Q ss_pred CceEEEEEcCCeEEEEEeCccccCccceeCCccceEEe-cCeEEEEecccHHHHHHHHHhC
Q psy4377 22 CASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKV-NESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 22 GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i-~~~i~~~~sG~~aD~q~l~~~l 81 (81)
|||++||+|+||||||||+|+++|.++.+++.+||++| ++|+++++||+.||+|+|.+.|
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l 61 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERF 61 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999 9999999999999999999864
No 3
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.80 E-value=1.2e-19 Score=127.45 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCCCC-CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 16 PPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 16 ~~~~~-~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
|+||. +|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.+.+.+
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~ 67 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRL 67 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHH
Confidence 57888 9999999999999999999999999999899999999999999999999999999998763
No 4
>KOG0174|consensus
Probab=99.78 E-value=2.3e-19 Score=127.46 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=63.5
Q ss_pred CCCCCCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 14 VQPPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 14 ~~~~~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.+..++++|||++|++|+|||||+||+|.|.|.++.++..+|+.+|+|+++||.||+.||.|.+.+++
T Consensus 11 ~~~~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~ 78 (224)
T KOG0174|consen 11 LPKEEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIV 78 (224)
T ss_pred CcccccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHH
Confidence 34446889999999999999999999999999999999999999999999999999999999998763
No 5
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.77 E-value=9e-19 Score=121.65 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=56.8
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEe-cCeEEEEecccHHHHHHHHHhC
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKV-NESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i-~~~i~~~~sG~~aD~q~l~~~l 81 (81)
||++||+|+||||||+|+|.++|+++.+++.+||++| ++|+++|+||+.||+|+|.+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~ 60 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERF 60 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 5999999999999999999864
No 6
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.77 E-value=1e-18 Score=121.38 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=57.0
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecC-eEEEEecccHHHHHHHHHhC
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNE-SILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~-~i~~~~sG~~aD~q~l~~~l 81 (81)
||++||+|+||||||+|+|.++|+++.+++.+||++|++ |+++|+||+.+|+|+|.+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~ 60 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERF 60 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999 99999999999999998864
No 7
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.76 E-value=2.1e-18 Score=124.63 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=61.8
Q ss_pred CCCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 17 PQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 17 ~~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
-|+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++++.||+.+|+|.|.+.+
T Consensus 34 ~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l 98 (247)
T PTZ00488 34 IEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWEREL 98 (247)
T ss_pred cccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999998864
No 8
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.75 E-value=3.2e-18 Score=118.63 Aligned_cols=61 Identities=41% Similarity=0.719 Sum_probs=58.4
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++++.+|..+|+|.+.+.+
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~ 61 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLL 61 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999998753
No 9
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.74 E-value=6.6e-18 Score=117.05 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=57.6
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 62 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKL 62 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHH
Confidence 6999999999999999999999988888888999999999999999999999999998753
No 10
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.4e-17 Score=119.40 Aligned_cols=61 Identities=26% Similarity=0.263 Sum_probs=58.4
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+|||+|||+++||||||+|+|.++|.++.+++.+||++|++|++++.||+.+|+|.|.+.+
T Consensus 29 ~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~ 89 (236)
T COG0638 29 GGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYA 89 (236)
T ss_pred CCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999998753
No 11
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.72 E-value=1.9e-17 Score=116.88 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+|+|+|||+++||||||+|+|.++|+++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~ 61 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLF 61 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999998753
No 12
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.71 E-value=2e-17 Score=113.48 Aligned_cols=59 Identities=24% Similarity=0.348 Sum_probs=56.4
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.|
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l 59 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYV 59 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999998753
No 13
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.71 E-value=2.4e-17 Score=112.68 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=57.1
Q ss_pred CceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 22 CASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 22 GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~ 59 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRI 59 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999875
No 14
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.70 E-value=3.4e-17 Score=112.96 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=56.4
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++++.||..+|+|.|.+.+
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 59 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVL 59 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999998763
No 15
>KOG0173|consensus
Probab=99.70 E-value=2.4e-17 Score=120.40 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=75.0
Q ss_pred CChhhhhhhCCcCCCCCCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 2 CDKADCKKAKPAVQPPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
|+||..++.+..-.+.-..+|||++|+.|+||||++||+|++-|+.+..+|..||+.|.++|++|.+|..+|...+.+.
T Consensus 17 c~rn~~l~~~g~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m 95 (271)
T KOG0173|consen 17 CQRNAALLKKGLKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRM 95 (271)
T ss_pred hhhHHHHHhcCCCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHH
Confidence 9999999988888887788999999999999999999999999999999999999999999999999999999988765
No 16
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.70 E-value=4.9e-17 Score=112.69 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=56.5
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++++.||..+|+|.|.+.+
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~ 60 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYI 60 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999998753
No 17
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.69 E-value=6.8e-17 Score=111.22 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=56.3
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++|+++++++.||..+|+|.|.+.+
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~ 59 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMI 59 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999998753
No 18
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.68 E-value=8.3e-17 Score=109.14 Aligned_cols=62 Identities=32% Similarity=0.453 Sum_probs=57.6
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCC-ccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCN-AQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~-~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.+|+|+|||+++|||+||+|+|.++|+.+..++ .+||++|++|+++++||..+|+|.+.+.+
T Consensus 2 ~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l 64 (190)
T PF00227_consen 2 NNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRL 64 (190)
T ss_dssp HTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhh
Confidence 379999999999999999999999999997777 69999999999999999999999998753
No 19
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.67 E-value=6.3e-17 Score=114.50 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=57.1
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.+|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..+|+|.+.+.+
T Consensus 25 ~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 85 (227)
T cd03750 25 SSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKA 85 (227)
T ss_pred HcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHH
Confidence 469999999999999999999998 7888889999999999999999999999999998753
No 20
>KOG0179|consensus
Probab=99.67 E-value=9.6e-17 Score=115.05 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=66.6
Q ss_pred CCcCCCCCCC-CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 11 KPAVQPPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 11 ~~~~~~~~~~-~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+.+.+|+||. ||+|++||+++||.|||+|||.+.|..+.+++.+||+++.|+++++.||.+||+..|++.|
T Consensus 17 ~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i 88 (235)
T KOG0179|consen 17 MDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVI 88 (235)
T ss_pred cccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHH
Confidence 4567899998 9999999999999999999999999999999999999999999999999999999998753
No 21
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.67 E-value=7.6e-17 Score=115.78 Aligned_cols=60 Identities=23% Similarity=0.245 Sum_probs=57.1
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+|+|+|||+++||||||+|+|.+++.++.+++.+||++|++|+++++||..+|++.+.+.
T Consensus 30 ~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~ 89 (253)
T PTZ00246 30 NASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQ 89 (253)
T ss_pred hCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHH
Confidence 499999999999999999999999999988889999999999999999999999998874
No 22
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.67 E-value=1.6e-16 Score=108.99 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=56.0
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|++.|.+.
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~ 58 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRI 58 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999875
No 23
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.66 E-value=1.4e-16 Score=112.24 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=56.8
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+.+|+|+|||+++||||||+|+|.+ ++++.+++.+||++|++++++++||..+|+|.+.+.
T Consensus 26 v~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~ 86 (224)
T TIGR03633 26 VKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDR 86 (224)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHH
Confidence 3469999999999999999999998 678888999999999999999999999999999875
No 24
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.65 E-value=1.6e-16 Score=111.42 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=57.9
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..+|++.+.+.+
T Consensus 27 ~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 88 (213)
T cd03752 27 SHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYA 88 (213)
T ss_pred hcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHH
Confidence 35999999999999999999999988888888999999999999999999999999998753
No 25
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.65 E-value=1.7e-16 Score=110.98 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=56.5
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.+|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++++.||..+|+|.+.+.+
T Consensus 26 ~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l 86 (211)
T cd03756 26 KRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRA 86 (211)
T ss_pred HcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHH
Confidence 369999999999999999999987 6788888999999999999999999999999998753
No 26
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.65 E-value=3.1e-16 Score=109.37 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=56.1
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.+|+|+|||+++||||+|+|+|.+.+ ++..++.+||++|++++++++||..+|+|.+.+.+
T Consensus 25 ~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l 85 (209)
T cd01911 25 KNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRA 85 (209)
T ss_pred HcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHH
Confidence 46999999999999999999999954 66678999999999999999999999999998764
No 27
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.64 E-value=5.6e-16 Score=105.68 Aligned_cols=58 Identities=34% Similarity=0.450 Sum_probs=55.6
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++|+++++++.||..+|+|.+.+.
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~ 58 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRL 58 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHH
Confidence 6899999999999999999999999889999999999999999999999999998875
No 28
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.63 E-value=3.7e-16 Score=109.39 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=55.3
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.+|+|+|||+++||||||+|+|.+. .++..++.+||++|++|+++++||..+|+|.+.+.
T Consensus 25 ~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~ 84 (213)
T cd03753 25 KLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDH 84 (213)
T ss_pred hcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHH
Confidence 3699999999999999999999985 56777899999999999999999999999999875
No 29
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.63 E-value=3e-16 Score=110.58 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=55.1
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.+|+|+|||+++||||||+|+|.++ .+...++.+||++|++|+++++||..+|++.+.+.
T Consensus 28 ~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~ 87 (212)
T cd03751 28 ENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSR 87 (212)
T ss_pred hcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHH
Confidence 3599999999999999999999985 66667789999999999999999999999999875
No 30
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.63 E-value=8.9e-16 Score=103.46 Aligned_cols=59 Identities=27% Similarity=0.307 Sum_probs=55.8
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
||+|||+++|||+||+|+|.++|....+++.+||++|++++++++||..+|++.+.+.+
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~ 59 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERL 59 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHH
Confidence 68999999999999999999999888889999999999999999999999999998753
No 31
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.62 E-value=1.2e-15 Score=108.68 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=56.2
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.+|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|+++++||..+|+|.+.+.
T Consensus 34 ~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~ 93 (241)
T PRK03996 34 KRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDR 93 (241)
T ss_pred HhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHH
Confidence 469999999999999999999998 678888899999999999999999999999999865
No 32
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.61 E-value=8.8e-16 Score=107.24 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.+|+|+|||+++||||||+|++.+ +.++.+++.+||++|++|+++++||..+|+|.+.+.
T Consensus 25 ~~G~t~Igik~~dgVvlaad~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~ 84 (207)
T cd03755 25 RKGTTAVGVRGKDCVVLGVEKKSV-AKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINR 84 (207)
T ss_pred HcCCCEEEEEeCCEEEEEEecCCC-CcccCCCccCcEEEECCCEEEEEecchhhHHHHHHH
Confidence 469999999999999999999976 457777789999999999999999999999999775
No 33
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.58 E-value=2.7e-15 Score=105.71 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=53.7
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+|+|+|||+++||||||+|+|.+.+ ++..++.+||++|++|+++++||..+|++.|.+.+
T Consensus 28 ~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~ 87 (215)
T cd03754 28 AGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRA 87 (215)
T ss_pred CCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHH
Confidence 5889999999999999999998865 44455889999999999999999999999998753
No 34
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.58 E-value=2.7e-15 Score=105.29 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=52.5
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.+|+|+|||+++||||||+|+|.+.+ + .++.+||++|++|+++++||..+|++.|.+.+
T Consensus 25 ~~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 83 (211)
T cd03749 25 KQGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYM 83 (211)
T ss_pred hcCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHHHHHHHH
Confidence 46999999999999999999997754 3 45779999999999999999999999998753
No 35
>KOG0175|consensus
Probab=99.56 E-value=3.5e-15 Score=109.52 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=60.7
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+.+|||++|++|++|||+|+|+|+|.|+++.++.+.||.+|+++.+-..+|-+||+|++.|+|
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L 130 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVL 130 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999875
No 36
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.46 E-value=1.8e-13 Score=98.77 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=50.5
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEec----CeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVN----ESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~----~~i~~~~sG~~aD~q~l~~~ 80 (81)
|-+|||+++||||||||+|.+.+.... ++.+||++|+ +|++++.||..||+|.|.+.
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~-~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~ 61 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNI-STYRKMFVFSVPGERVIVLLTAGNLATTQAVISL 61 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccc-cccceEEEecCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 457999999999999999988764444 4799999998 99999999999999999875
No 37
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.43 E-value=2.5e-13 Score=97.23 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=47.7
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.|+|+|||+++||||||+|++ +++.+||++|++|+++++||..+|++.+.+.
T Consensus 26 ~g~T~VGIk~kdgVVLaaek~--------~~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~ 77 (228)
T TIGR03691 26 RGRSVVVLTYADGILFVAENP--------SRSLHKISELYDRIGFAAVGKYNEFENLRRA 77 (228)
T ss_pred cCCcEEEEEeCCeEEEEEecC--------CCCcCcEEEecCCEEEEEcCCHHHHHHHHHH
Confidence 399999999999999999996 2478999999999999999999999998763
No 38
>KOG0177|consensus
Probab=99.37 E-value=5.1e-13 Score=94.48 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=56.3
Q ss_pred CceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 22 CASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 22 GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+.|++||++.|||++||||..++|.++++++.+|+++|++|++++++|+.+|+.++.+.
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~ey 59 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEY 59 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHH
Confidence 46899999999999999999999999999999999999999999999999999998874
No 39
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.29 E-value=1.2e-11 Score=79.63 Aligned_cols=58 Identities=26% Similarity=0.150 Sum_probs=54.9
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+|+||++++|||++|+|++.+.+......+.+|+++++++++++.+|..+|++.+.+.
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~ 58 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRR 58 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHH
Confidence 5899999999999999999999988878899999999999999999999999999875
No 40
>KOG0176|consensus
Probab=99.26 E-value=4e-12 Score=91.13 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=54.8
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHH
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~ 79 (81)
.|+|.|||+.++||+||++.|.+ +.+.-++.+.|+++|++||+|++||..||...+.+
T Consensus 33 LGsTaIGv~TkEgVvL~vEKrit-SpLm~p~sveKi~eid~HIgca~SGl~aDarTlve 90 (241)
T KOG0176|consen 33 LGSTAIGVKTKEGVVLAVEKRIT-SPLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVE 90 (241)
T ss_pred cCCceeeeeccceEEEEEecccc-CcccCchhhhhheehhhceeeeccccccchHHHHH
Confidence 49999999999999999999988 67888899999999999999999999999999875
No 41
>KOG0180|consensus
Probab=99.02 E-value=4.5e-10 Score=79.17 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=56.8
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
||++++|++++++|.||+|.|.-.-+...+.+.+||++++++.++|.+|...|.|.+.+.|
T Consensus 7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~ 67 (204)
T KOG0180|consen 7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERL 67 (204)
T ss_pred cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHH
Confidence 8999999999999999999998776777788999999999999999999999999998753
No 42
>KOG0184|consensus
Probab=99.00 E-value=7.3e-10 Score=80.47 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=54.0
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+++|.|||+.+||||++++...+ +.+-....-.||+.|++||.++++|.++|.+++...
T Consensus 33 n~~T~IGIk~kdGVVl~vEKli~-SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ 91 (254)
T KOG0184|consen 33 NSGTCIGIKCKDGVVLAVEKLIT-SKLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNR 91 (254)
T ss_pred cCCcEEEEecCCeEEEEEeeeec-ccccccCCCCceEeecccccEEEeccccchHHHHHH
Confidence 69999999999999999999887 567777888999999999999999999999998753
No 43
>KOG0178|consensus
Probab=98.71 E-value=9.6e-09 Score=74.34 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=54.5
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
++-+|.|||.-+|||||++..+.+.--+-.+...+||++|+|+++|+.+|..+|...|.+.
T Consensus 29 s~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~ 89 (249)
T KOG0178|consen 29 SHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNY 89 (249)
T ss_pred hhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHH
Confidence 3488999999999999999999886666667789999999999999999999999888764
No 44
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3e-08 Score=69.18 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=56.0
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecC-eEEEEecccHHHHHHHHHh
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNE-SILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~-~i~~~~sG~~aD~q~l~~~ 80 (81)
++||+++++-++=|+||+|.+.|.|+.+++.+..|+.+|.. .++.|++|..||...|.+.
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~ 63 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFER 63 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHH
Confidence 68999999999999999999999999999999999988876 8999999999999888764
No 45
>KOG0183|consensus
Probab=98.38 E-value=1.5e-07 Score=68.23 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=56.8
Q ss_pred hCCcCCCCCCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHH
Q psy4377 10 AKPAVQPPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79 (81)
Q Consensus 10 a~~~~~~~~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~ 79 (81)
|-|++++ |+|++|+++++-|+|+-+.+.. ..+-..+...||..+++|+.+++||.-+|...+++
T Consensus 23 AqEAvrk-----GstaVgvrg~~~vvlgvEkkSv-~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilin 86 (249)
T KOG0183|consen 23 AQEAVRK-----GSTAVGVRGNNCVVLGVEKKSV-PKLQDERTVRKISMLDDHVVMAFAGLTADARILIN 86 (249)
T ss_pred HHHHHhc-----CceEEEeccCceEEEEEeecch-hhhhhhhhhhhheeecceeeEEecCCCccceeehh
Confidence 4566677 9999999999999999999866 67887889999999999999999999999987654
No 46
>KOG0181|consensus
Probab=98.29 E-value=2.6e-07 Score=66.40 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=53.7
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHH
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~ 79 (81)
.+|.+.+||+-.||||||+..... +.++....++|+++|.+||.|-.||+..|++.+.+
T Consensus 30 ~~G~~SvGi~A~nGvVlatekk~~-s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~ 88 (233)
T KOG0181|consen 30 VNGQTSVGIKAANGVVLATEKKDV-SPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVH 88 (233)
T ss_pred hCCCCceeeeecCceEEEeccCCC-CccchhhhhhhHhhccCCcceEEecCCCceeehhh
Confidence 359999999999999999999766 68999999999999999999999999999887654
No 47
>KOG0863|consensus
Probab=98.25 E-value=5.4e-07 Score=65.97 Aligned_cols=65 Identities=22% Similarity=0.212 Sum_probs=56.0
Q ss_pred hhCCcCCCCCCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 9 KAKPAVQPPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 9 ~a~~~~~~~~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
=|.|+++. |++++|++.+.-.||+|=.|.. +.+ +....||++|++|+.++++|..+|.+.|.+.|
T Consensus 24 ya~Eavkq-----GsatVGLks~thaVLvAl~r~~-seL--ss~QkKi~~iD~h~g~siAGLt~Darvl~~Yl 88 (264)
T KOG0863|consen 24 YAMEAVKQ-----GSATVGLKSRTHAVLVALKRAQ-SEL--SSHQKKIFKIDDHIGISIAGLTADARVLSRYL 88 (264)
T ss_pred HHHHHHhc-----ccceEeecccceEEEeeeccch-hHH--HHhhheeEecccccceEEeccCcchHHHHHHH
Confidence 35667777 9999999999999999999877 333 34789999999999999999999999998764
No 48
>KOG0182|consensus
Probab=97.11 E-value=0.0014 Score=47.77 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=52.9
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHH
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~ 79 (81)
.|=|++|++.+|-+++++-.+.. ..++-.+.+.-+|+|+++|+++.+|..+|..+..+
T Consensus 35 ~gltsVavrgkDcavvvsqKkvp-DKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~ 92 (246)
T KOG0182|consen 35 AGLTSVAVRGKDCAVVVTQKKVP-DKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQ 92 (246)
T ss_pred CCCceEEEcCCceEEEEecccCc-ccccccccceeEEEeeccceEEEecCCcchHHHHH
Confidence 58899999999999999999877 67888888999999999999999999999987654
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=86.94 E-value=0.92 Score=33.28 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=43.3
Q ss_pred CceEEEEEcCCeEEEEEeCccccCccceeCCccceEEec----CeEEEEecccHHHHHHHHHhC
Q psy4377 22 CASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVN----ESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 22 GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~----~~i~~~~sG~~aD~q~l~~~l 81 (81)
+|-.+|++-+.|.|.++|+|...|.--. ....|++... .-++++.+|..|=.|.+..+|
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD~i-stfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll 63 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVDYI-STFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLL 63 (255)
T ss_pred CceEEEEEeccceEEecccccccCchHH-HHHHHHhhccCCCceEEEEEecCccHHHHHHHHHH
Confidence 3567999999999999999998773221 2445555432 337889999999999887653
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=76.21 E-value=2.4 Score=30.43 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=18.5
Q ss_pred CceEEEEEcCCeEEEEEeCcc
Q psy4377 22 CASVFGLQFDRGVLLAADSLV 42 (81)
Q Consensus 22 GtTvigi~~~~GVvlaaDtr~ 42 (81)
|+=|||..+++|.|+|.|.|.
T Consensus 1 MSLII~y~GknGaViaGDkR~ 21 (194)
T PF09894_consen 1 MSLIIAYYGKNGAVIAGDKRN 21 (194)
T ss_pred CeEEEEEecCCCcEEecccee
Confidence 456899999999999999973
No 51
>PF13734 Inhibitor_I69: Spi protease inhibitor; PDB: 1PVJ_A 1DKI_D 2UZJ_A 2JTC_A 4D8E_A 4D8I_A 4D8B_A.
Probab=51.47 E-value=12 Score=23.80 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=14.1
Q ss_pred EEEEEcCCeEEEEEeCccc
Q psy4377 25 VFGLQFDRGVLLAADSLVS 43 (81)
Q Consensus 25 vigi~~~~GVvlaaDtr~s 43 (81)
|+-...+||||+++|.|..
T Consensus 45 I~N~~~~GFVIVSgDdr~~ 63 (96)
T PF13734_consen 45 IFNDNNKGFVIVSGDDRMG 63 (96)
T ss_dssp EEEETTS-EEEEESBTTS-
T ss_pred EEEcCCCEEEEEECCCCcc
Confidence 5555678999999999976
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.21 E-value=13 Score=28.02 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=18.3
Q ss_pred CceEEEEEcCCeEEEEEeCcc
Q psy4377 22 CASVFGLQFDRGVLLAADSLV 42 (81)
Q Consensus 22 GtTvigi~~~~GVvlaaDtr~ 42 (81)
+|-+|+..+++|.|+|.|.|.
T Consensus 1 MtLviay~gknGaviaGDrR~ 21 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRRE 21 (293)
T ss_pred CeEEEEEecCCCcEEeccceE
Confidence 466899999999999999973
No 53
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=31.69 E-value=32 Score=24.35 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.7
Q ss_pred EEEEecccHHHHHHHHHhC
Q psy4377 63 ILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 63 i~~~~sG~~aD~q~l~~~l 81 (81)
+.||-.|+++|.|.|...|
T Consensus 45 l~cGNGgSaadAqHfaael 63 (176)
T COG0279 45 LACGNGGSAADAQHFAAEL 63 (176)
T ss_pred EEECCCcchhhHHHHHHHH
Confidence 6778889999999997643
No 54
>PRK07105 pyridoxamine kinase; Validated
Probab=27.42 E-value=60 Score=23.21 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=24.2
Q ss_pred ccceEEecCeEEEEecccHHHHHHHHH
Q psy4377 53 AQRIVKVNESILLGGGNNFADLQYLQD 79 (81)
Q Consensus 53 ~~Ki~~i~~~i~~~~sG~~aD~q~l~~ 79 (81)
.+|+.-++|+...|.+|..+|...+..
T Consensus 4 ~~~vl~~~d~~~~G~aG~~adi~~~~~ 30 (284)
T PRK07105 4 VKRVAAIHDLSGFGRVALTASIPIMSS 30 (284)
T ss_pred CCeEEEEecccccceehHhhHHHHHHH
Confidence 458999999999999999999998864
No 55
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.92 E-value=62 Score=25.81 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCcccee
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALF 50 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~ 50 (81)
.|++|.++. ||.||-||-.-.||.++.-
T Consensus 330 ~Ga~V~A~A--dG~VvyA~~l~GYG~vvIl 357 (420)
T COG4942 330 AGATVKAIA--DGRVVYADWLRGYGLVVIL 357 (420)
T ss_pred CCCeeeeec--CceEEechhhccCceEEEE
Confidence 478888775 9999999999999977764
No 56
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=20.43 E-value=1.7e+02 Score=23.75 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=33.7
Q ss_pred CceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCe
Q psy4377 22 CASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNES 62 (81)
Q Consensus 22 GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~ 62 (81)
|+|+--..|.+|-++.++...--|..+.+++..||..|++.
T Consensus 155 gGTT~iaVf~~G~l~~T~~l~vGG~~IT~D~~~~i~yis~~ 195 (475)
T PRK10719 155 GGTANYALFDAGKVIDTACLNVGGRLIETDSQGRVTYISPP 195 (475)
T ss_pred CCceEEEEEECCEEEEEEEEecccceEEECCCCCEEEEChH
Confidence 55555567999999999998877889988888899999865
Done!