Query psy4377
Match_columns 81
No_of_seqs 103 out of 857
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:59:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_H Proteasome component PU 99.8 1E-20 3.4E-25 136.2 6.9 80 1-80 8-87 (261)
2 1iru_M 20S proteasome; cell cy 99.8 1.1E-19 3.8E-24 125.3 8.1 67 15-81 1-68 (213)
3 1ryp_M 20S proteasome; multica 99.8 2.2E-19 7.5E-24 125.2 7.6 67 15-81 1-68 (222)
4 1iru_J 20S proteasome; cell cy 99.8 4.6E-19 1.6E-23 121.7 7.8 64 17-80 2-66 (205)
5 1ryp_H 20S proteasome; multica 99.8 6.3E-19 2.2E-23 121.1 7.8 65 16-80 3-67 (205)
6 2z3b_A ATP-dependent protease 99.8 6.3E-19 2.2E-23 119.9 7.7 62 20-81 3-66 (180)
7 1yar_H Proteasome beta subunit 99.8 6.1E-19 2.1E-23 122.6 6.8 63 18-80 4-66 (217)
8 1iru_N 20S proteasome; cell cy 99.8 8.2E-19 2.8E-23 121.6 6.6 65 17-81 3-67 (219)
9 1ryp_N 20S proteasome; multica 99.8 8.9E-19 3.1E-23 122.7 6.7 65 17-81 3-67 (233)
10 1g0u_M Proteasome component PR 99.8 1E-18 3.5E-23 125.2 6.7 68 14-81 33-100 (266)
11 1ryp_J 20S proteasome; multica 99.7 2.3E-18 8E-23 118.0 7.2 63 17-80 2-65 (204)
12 1m4y_A ATP-dependent protease 99.7 6.2E-18 2.1E-22 113.6 7.1 59 23-81 1-60 (171)
13 3nzj_K Proteasome component PR 99.7 4.9E-18 1.7E-22 123.8 6.5 64 18-81 71-134 (287)
14 1g3k_A ATP-dependent protease 99.7 8E-18 2.7E-22 113.4 7.1 58 23-80 1-59 (174)
15 1q5r_H Proteasome beta-type su 99.7 8.5E-18 2.9E-22 122.8 7.1 62 19-80 62-123 (294)
16 1ryp_D 20S proteasome; multica 99.7 5E-18 1.7E-22 119.4 5.6 62 20-81 26-87 (241)
17 1ryp_C 20S proteasome; multica 99.7 7.7E-18 2.6E-22 118.4 6.4 63 19-81 28-90 (244)
18 3unf_N Proteasome subunit beta 99.7 1.3E-17 4.6E-22 113.7 7.0 58 23-80 1-58 (199)
19 3h4p_a Proteasome subunit beta 99.7 9.8E-18 3.3E-22 116.8 6.3 59 22-80 1-59 (219)
20 1iru_K 20S proteasome; cell cy 99.7 1.3E-17 4.3E-22 114.1 6.6 59 22-80 1-59 (201)
21 2jay_A Proteasome; hydrolase; 99.7 1.1E-17 3.8E-22 121.9 6.7 62 19-80 54-115 (291)
22 1ryp_K 20S proteasome; multica 99.7 1.7E-17 5.8E-22 113.1 6.8 59 22-80 1-59 (198)
23 1iru_E 20S proteasome; cell cy 99.7 1.5E-17 5.1E-22 116.9 6.5 61 19-80 31-91 (241)
24 1ryp_A 20S proteasome; multica 99.7 2.1E-17 7.1E-22 116.4 7.0 60 20-80 27-87 (243)
25 1iru_C 20S proteasome; cell cy 99.7 1.1E-17 3.9E-22 119.2 5.6 63 19-81 28-90 (261)
26 1yar_A Proteasome alpha subuni 99.7 1.9E-17 6.4E-22 115.8 6.4 61 19-80 31-91 (233)
27 1iru_L 20S proteasome; cell cy 99.7 2.8E-17 9.7E-22 112.6 6.8 58 23-80 1-58 (204)
28 1j2q_H Proteasome beta subunit 99.7 3.2E-17 1.1E-21 112.2 6.9 58 23-80 1-58 (202)
29 1ryp_E 20S proteasome; multica 99.7 1.5E-17 5E-22 116.9 5.3 61 19-80 23-83 (242)
30 1iru_H 20S proteasome; cell cy 99.7 3.7E-17 1.3E-21 112.1 6.8 58 23-80 1-58 (205)
31 1ryp_L 20S proteasome; multica 99.7 4.1E-17 1.4E-21 112.5 6.8 58 23-80 1-58 (212)
32 1iru_A 20S proteasome; cell cy 99.7 4.2E-17 1.4E-21 115.0 6.6 59 22-81 36-94 (246)
33 1iru_B 20S proteasome; cell cy 99.7 4.7E-17 1.6E-21 113.8 6.6 60 20-80 29-88 (233)
34 1ryp_B 20S proteasome; multica 99.7 5.8E-17 2E-21 114.6 6.6 60 20-80 29-88 (250)
35 3unf_H Proteasome subunit beta 99.7 6.7E-17 2.3E-21 114.3 6.9 58 23-80 1-58 (234)
36 1ryp_I 20S proteasome; multica 99.7 7.8E-17 2.7E-21 112.4 6.8 58 23-80 1-58 (222)
37 1q5q_H Proteasome beta-type su 99.7 6.9E-17 2.4E-21 113.5 6.5 58 23-80 1-58 (235)
38 1iru_I 20S proteasome; cell cy 99.7 1E-16 3.5E-21 112.9 7.2 58 23-80 1-58 (234)
39 1iru_G 20S proteasome; cell cy 99.7 8.9E-17 3.1E-21 114.2 6.5 60 20-80 31-90 (254)
40 1ryp_G 20S proteasome; multica 99.7 8.1E-17 2.8E-21 113.8 6.2 61 19-80 27-87 (244)
41 1iru_D 20S proteasome; cell cy 99.7 7.1E-17 2.4E-21 114.2 5.8 60 20-80 27-86 (248)
42 3h4p_A Proteasome subunit alph 99.7 2.4E-17 8.3E-22 118.3 3.3 60 20-80 36-95 (264)
43 1j2p_A Alpha-ring, proteasome 99.7 1.8E-16 6.2E-21 111.8 7.1 61 19-80 31-91 (246)
44 1ryp_F 20S proteasome; multica 99.6 5.2E-16 1.8E-20 108.6 7.4 57 21-80 30-86 (233)
45 3nzj_F Proteasome component C1 99.6 3.7E-16 1.3E-20 113.9 6.1 61 20-81 32-92 (288)
46 1iru_F 20S proteasome; cell cy 99.6 9.8E-16 3.3E-20 109.5 6.8 57 21-80 31-87 (263)
47 3mi0_A Proteasome subunit alph 99.6 1.7E-15 5.8E-20 108.2 4.8 52 21-80 26-77 (248)
48 1q5q_A Proteasome alpha-type s 99.6 4.9E-15 1.7E-19 105.8 6.8 54 19-80 24-77 (259)
49 2wqk_A 5'-nucleotidase SURE; S 34.2 83 0.0028 21.8 5.2 45 34-78 31-76 (251)
50 3fwy_A Light-independent proto 28.6 19 0.00064 25.6 1.0 14 21-34 46-59 (314)
51 2jwk_A Protein TOLR; periplasm 22.0 25 0.00084 19.0 0.5 16 33-48 47-62 (74)
No 1
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.82 E-value=1e-20 Score=136.19 Aligned_cols=80 Identities=18% Similarity=0.304 Sum_probs=56.7
Q ss_pred CCChhhhhhhCCcCCCCCCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 1 MCDKADCKKAKPAVQPPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 1 ~~~~~~~~~a~~~~~~~~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.|.||...+++....+..+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 8 ~~~rn~~~~~~~~~~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~ 87 (261)
T 3nzj_H 8 NYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQL 87 (261)
T ss_dssp ----------------------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHH
T ss_pred hhhhHHHHHhcCCCCCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHH
Confidence 38999999888777777778999999999999999999999999999999999999999999999999999999999875
No 2
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.80 E-value=1.1e-19 Score=125.33 Aligned_cols=67 Identities=10% Similarity=0.096 Sum_probs=63.1
Q ss_pred CCCCCC-CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 15 QPPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 15 ~~~~~~-~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+++|++ +|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 68 (213)
T 1iru_M 1 RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68 (213)
T ss_dssp CCCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred CCCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHH
Confidence 368888 9999999999999999999999999999999999999999999999999999999998753
No 3
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.79 E-value=2.2e-19 Score=125.22 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=63.1
Q ss_pred CCCCCC-CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 15 QPPQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 15 ~~~~~~-~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.++|++ +|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 68 (222)
T 1ryp_M 1 QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68 (222)
T ss_dssp CCCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHH
T ss_pred CCCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHH
Confidence 367888 9999999999999999999999999999999999999999999999999999999998753
No 4
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.78 E-value=4.6e-19 Score=121.66 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=60.8
Q ss_pred CCCC-CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 17 PQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 17 ~~~~-~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+|+. +|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 66 (205)
T 1iru_J 2 SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66 (205)
T ss_dssp CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHH
T ss_pred CcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHH
Confidence 5666 899999999999999999999999999999999999999999999999999999999875
No 5
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.77 E-value=6.3e-19 Score=121.12 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=61.3
Q ss_pred CCCCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 16 PPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 16 ~~~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+.++.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 67 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADI 67 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHH
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999875
No 6
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.77 E-value=6.3e-19 Score=119.88 Aligned_cols=62 Identities=21% Similarity=0.335 Sum_probs=59.0
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCcc-ceeCCccceEEe-cCeEEEEecccHHHHHHHHHhC
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGL-ALFCNAQRIVKV-NESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~-v~~~~~~Ki~~i-~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.+|||+|||+++||||||+|+|.++|.+ +.+++.+||++| ++|+++++||+.+|+|.|.+.+
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~ 66 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKF 66 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHH
Confidence 4799999999999999999999999988 999999999999 9999999999999999998753
No 7
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.77 E-value=6.1e-19 Score=122.59 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=56.6
Q ss_pred CCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 18 QPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 18 ~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
++.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 66 (217)
T 1yar_H 4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRY 66 (217)
T ss_dssp -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred CCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHH
Confidence 344899999999999999999999999999999999999999999999999999999999875
No 8
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.76 E-value=8.2e-19 Score=121.60 Aligned_cols=65 Identities=42% Similarity=0.711 Sum_probs=61.2
Q ss_pred CCCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 17 PQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 17 ~~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.++.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 67 (219)
T 1iru_N 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVL 67 (219)
T ss_dssp SCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHH
T ss_pred CCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999998753
No 9
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.76 E-value=8.9e-19 Score=122.70 Aligned_cols=65 Identities=26% Similarity=0.521 Sum_probs=61.3
Q ss_pred CCCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 17 PQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 17 ~~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 67 (233)
T 1ryp_N 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 67 (233)
T ss_dssp CCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHH
T ss_pred ccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999998753
No 10
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.76 E-value=1e-18 Score=125.18 Aligned_cols=68 Identities=25% Similarity=0.486 Sum_probs=63.1
Q ss_pred CCCCCCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 14 VQPPQPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 14 ~~~~~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
..+.++.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 33 ~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~l 100 (266)
T 1g0u_M 33 NTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 100 (266)
T ss_dssp -CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHH
T ss_pred hhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999998753
No 11
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.75 E-value=2.3e-18 Score=118.03 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=59.5
Q ss_pred CCCC-CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 17 PQPL-SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 17 ~~~~-~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+|+. +|||+|||+++||||||+|+|.++|.++.+++.+||++|+ |+++++||..+|+|.|.+.
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~ 65 (204)
T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 65 (204)
T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHH
T ss_pred CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHH
Confidence 4565 8999999999999999999999999999999999999999 9999999999999999875
No 12
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.73 E-value=6.2e-18 Score=113.56 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=56.6
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEe-cCeEEEEecccHHHHHHHHHhC
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKV-NESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i-~~~i~~~~sG~~aD~q~l~~~l 81 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++| ++|+++++||..+|+|.|.+.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~ 60 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 9999999999999999998753
No 13
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.72 E-value=4.9e-18 Score=123.77 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=56.9
Q ss_pred CCCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 18 QPLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 18 ~~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
++.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 71 ~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~l 134 (287)
T 3nzj_K 71 KIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWL 134 (287)
T ss_dssp -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHH
T ss_pred heccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHH
Confidence 5668999999999999999999999999999999999999999999999999999999998753
No 14
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.72 E-value=8e-18 Score=113.44 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=56.1
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEe-cCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKV-NESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i-~~~i~~~~sG~~aD~q~l~~~ 80 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++| ++|+++++||..+|+|.|.+.
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~ 59 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFEL 59 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 999999999999999999875
No 15
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.72 E-value=8.5e-18 Score=122.83 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=59.4
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~ 123 (294)
T 1q5r_H 62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRL 123 (294)
T ss_dssp SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHH
T ss_pred HhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999875
No 16
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.72 E-value=5e-18 Score=119.40 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=58.5
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 26 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 87 (241)
T 1ryp_D 26 KRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKA 87 (241)
T ss_dssp TTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred HcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHH
Confidence 35999999999999999999999999999888999999999999999999999999998753
No 17
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.72 E-value=7.7e-18 Score=118.45 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=58.8
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 90 (244)
T 1ryp_C 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTA 90 (244)
T ss_dssp HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHH
T ss_pred HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHH
Confidence 346999999999999999999999999888789999999999999999999999999998753
No 18
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.71 E-value=1.3e-17 Score=113.67 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=56.2
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 58 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADM 58 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999875
No 19
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=9.8e-18 Score=116.80 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=56.5
Q ss_pred CceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 22 CASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 22 GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~ 59 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRL 59 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999875
No 20
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.71 E-value=1.3e-17 Score=114.14 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=56.9
Q ss_pred CceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 22 CASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 22 GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 59 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEY 59 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999875
No 21
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.71 E-value=1.1e-17 Score=121.93 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=48.9
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~ 115 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARL 115 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999875
No 22
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.71 E-value=1.7e-17 Score=113.11 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=56.9
Q ss_pred CceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 22 CASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 22 GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 59 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEY 59 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999875
No 23
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.70 E-value=1.5e-17 Score=116.95 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=57.5
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+.+|||+|||+++||||||+|+|.++|.++ +++.+||++|++|+++++||..+|+|.|.+.
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 91 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDK 91 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHH
Confidence 346999999999999999999999999888 8999999999999999999999999999875
No 24
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.70 E-value=2.1e-17 Score=116.37 Aligned_cols=60 Identities=8% Similarity=-0.013 Sum_probs=57.3
Q ss_pred CC-CceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 20 LS-CASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 20 ~~-GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.+ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 27 ~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 87 (243)
T 1ryp_A 27 NQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALR 87 (243)
T ss_dssp TTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHH
Confidence 46 9999999999999999999999 899999999999999999999999999999999875
No 25
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.70 E-value=1.1e-17 Score=119.19 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=59.1
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
+.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 90 (261)
T 1iru_C 28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNEL 90 (261)
T ss_dssp HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHH
T ss_pred HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHH
Confidence 346999999999999999999999999999998899999999999999999999999998753
No 26
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.70 E-value=1.9e-17 Score=115.81 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=56.9
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+.+|||+|||+++||||||+|+|.+++ ++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 91 (233)
T 1yar_A 31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDF 91 (233)
T ss_dssp HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHH
T ss_pred HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHH
Confidence 346999999999999999999999986 6778999999999999999999999999999875
No 27
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.70 E-value=2.8e-17 Score=112.61 Aligned_cols=58 Identities=19% Similarity=0.313 Sum_probs=56.0
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 58 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERL 58 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999875
No 28
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.69 E-value=3.2e-17 Score=112.19 Aligned_cols=58 Identities=17% Similarity=0.343 Sum_probs=56.1
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 58 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARI 58 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999875
No 29
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.69 E-value=1.5e-17 Score=116.89 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=57.3
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+.+|||+|||+++||||||+|+|.++|.++ +++.+||++|++|+++++||..+|+|.|.+.
T Consensus 23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 83 (242)
T 1ryp_E 23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEH 83 (242)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHH
T ss_pred HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHH
Confidence 346999999999999999999999999877 8899999999999999999999999999875
No 30
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.69 E-value=3.7e-17 Score=112.08 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=56.0
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 58 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADA 58 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999875
No 31
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.69 E-value=4.1e-17 Score=112.52 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=56.1
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 58 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETW 58 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999875
No 32
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.68 E-value=4.2e-17 Score=114.96 Aligned_cols=59 Identities=12% Similarity=0.025 Sum_probs=56.4
Q ss_pred CceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 22 CASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 22 GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..+|+|.|.+.+
T Consensus 36 Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 94 (246)
T 1iru_A 36 GLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRA 94 (246)
T ss_dssp CCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHH
T ss_pred CCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHH
Confidence 9999999999999999999999 7899999999999999999999999999999998753
No 33
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.68 E-value=4.7e-17 Score=113.76 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=57.1
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.+|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 29 ~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 88 (233)
T 1iru_B 29 AGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 88 (233)
T ss_dssp HTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHH
T ss_pred HcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHH
Confidence 469999999999999999999998 789999999999999999999999999999999875
No 34
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.68 E-value=5.8e-17 Score=114.64 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=57.1
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.+|||+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 29 ~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 88 (250)
T 1ryp_B 29 KQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDK 88 (250)
T ss_dssp HTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHH
T ss_pred HcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHH
Confidence 469999999999999999999998 889999999999999999999999999999999875
No 35
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.68 E-value=6.7e-17 Score=114.33 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=56.1
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..||+|.+.+.
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~ 58 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRM 58 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999875
No 36
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.67 E-value=7.8e-17 Score=112.43 Aligned_cols=58 Identities=21% Similarity=0.379 Sum_probs=56.0
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~ 58 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQL 58 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999875
No 37
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.67 E-value=6.9e-17 Score=113.50 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=56.2
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~ 58 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRL 58 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999875
No 38
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.67 E-value=1e-16 Score=112.86 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=56.0
Q ss_pred ceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 23 tTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..||+|.|.+.
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~ 58 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQL 58 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999875
No 39
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.66 E-value=8.9e-17 Score=114.18 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=56.6
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.+|+|+|||+++||||||+|+|.++|.++. ++.+||++|++|+++++||..+|+|.|.+.
T Consensus 31 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~ 90 (254)
T 1iru_G 31 ENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADI 90 (254)
T ss_dssp HTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred hcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHH
Confidence 469999999999999999999999998885 799999999999999999999999999875
No 40
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.66 E-value=8.1e-17 Score=113.82 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=56.3
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+.+|||+|||+++||||||+|+|.++|.++.+++ +||++|++|+++++||..+|+|.|.+.
T Consensus 27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~-~KI~~i~~~i~~~~aG~~aD~~~l~~~ 87 (244)
T 1ryp_G 27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVYSGLIPDGRHLVNR 87 (244)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTS-CCCEEETTTEEEEEEECHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCEEEEEEecccCCCCcccccc-CceEEecCCEEEEEcccHHHHHHHHHH
Confidence 3469999999999999999999999998887655 999999999999999999999999875
No 41
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.66 E-value=7.1e-17 Score=114.22 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=56.3
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.+|+|+|||+++||||||+|+|.++| ++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 27 ~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~ 86 (248)
T 1iru_D 27 KKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINR 86 (248)
T ss_dssp HTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHH
T ss_pred HcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHH
Confidence 46999999999999999999999988 6777899999999999999999999999999875
No 42
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=2.4e-17 Score=118.34 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=56.2
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
.+|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 36 ~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~ 95 (264)
T 3h4p_A 36 RRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDR 95 (264)
T ss_dssp HHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTT
T ss_pred hcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHH
Confidence 36999999999999999999999976 7788999999999999999999999999999864
No 43
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.66 E-value=1.8e-16 Score=111.84 Aligned_cols=61 Identities=28% Similarity=0.313 Sum_probs=56.1
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+.+|||+|||+++||||||+|+|.+.+ ++.+++.+||++|++|+++++||..+|+|.|.+.
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~ 91 (246)
T 1j2p_A 31 VKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDR 91 (246)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHH
T ss_pred HHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHH
Confidence 347999999999999999999999976 5558899999999999999999999999999875
No 44
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.63 E-value=5.2e-16 Score=108.59 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=52.9
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+|||+|||+++||||||+|+|.+.|. . ++.+||++|++|+++++||..+|+|.|.+.
T Consensus 30 ~Gtt~vgi~~~dgVvlaaD~r~~~~l-~--~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 86 (233)
T 1ryp_F 30 QGSVTVGLRSNTHAVLVALKRNADEL-S--SYQKKIIKCDEHMGLSLAGLAPDARVLSNY 86 (233)
T ss_dssp TSCCEEEEECSSEEEEEEECCCSSTT-B--CCCCCEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred cCCCEEEEEcCCEEEEEEEecccccc-c--cccCcEEEEcCCEEEEEEechHHHHHHHHH
Confidence 69999999999999999999999873 2 488999999999999999999999999875
No 45
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.62 E-value=3.7e-16 Score=113.87 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=56.2
Q ss_pred CCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHhC
Q psy4377 20 LSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81 (81)
Q Consensus 20 ~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~l 81 (81)
.+|+|+|||+++||||||+|+|.++|.++.+ ..+||++|++|+++++||..+|+|.|.+.+
T Consensus 32 ~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~l 92 (288)
T 3nzj_F 32 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRG 92 (288)
T ss_dssp HTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHH
T ss_pred hcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHH
Confidence 3699999999999999999999999988765 679999999999999999999999998753
No 46
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.61 E-value=9.8e-16 Score=109.54 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=53.0
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+|+|+|||+++||||||+|+|.++|. .++.+||++|++|+++++||..+|+|.|.+.
T Consensus 31 ~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~ 87 (263)
T 1iru_F 31 QGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNF 87 (263)
T ss_dssp HSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred cCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHH
Confidence 59999999999999999999999884 2488999999999999999999999999875
No 47
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.57 E-value=1.7e-15 Score=108.21 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=48.4
Q ss_pred CCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 21 ~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+|+|+|||+++||||||+|+| +++.+||++|++|+++++||..+|+|.|.+.
T Consensus 26 ~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~ 77 (248)
T 3mi0_A 26 RAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRG 77 (248)
T ss_dssp TSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred CCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHH
Confidence 499999999999999999999 4589999999999999999999999998653
No 48
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.56 E-value=4.9e-15 Score=105.80 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=50.0
Q ss_pred CCCCceEEEEEcCCeEEEEEeCccccCccceeCCccceEEecCeEEEEecccHHHHHHHHHh
Q psy4377 19 PLSCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDS 80 (81)
Q Consensus 19 ~~~GtTvigi~~~~GVvlaaDtr~s~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~~~ 80 (81)
+.+|+|+|||+++||||||+|+| +++.+||++|++|+++++||..+|+|.|.+.
T Consensus 24 v~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~ 77 (259)
T 1q5q_A 24 IARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRA 77 (259)
T ss_dssp HHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred HhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHH
Confidence 34699999999999999999999 4689999999999999999999999999873
No 49
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=34.18 E-value=83 Score=21.80 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=32.4
Q ss_pred EEEEEeCccc-cCccceeCCccceEEecCeEEEEecccHHHHHHHH
Q psy4377 34 VLLAADSLVS-FEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQ 78 (81)
Q Consensus 34 VvlaaDtr~s-~g~~v~~~~~~Ki~~i~~~i~~~~sG~~aD~q~l~ 78 (81)
+|+|=|+..| .|.-+.....-++.++.+.-..+++|.-+|+-.+.
T Consensus 31 ~VvAP~~~~Sg~g~siT~~~pl~~~~~~~~~~~~v~GTPaDCV~la 76 (251)
T 2wqk_A 31 VVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFYTVIDGTPADCVHLG 76 (251)
T ss_dssp EEEEESSCCTTSCCSCCCSSCEEEEEEETTEEEETTCCHHHHHHHH
T ss_pred EEEeeCCCCcccccCcCCCCCceeEEeeccceeecCCChHHHHhhh
Confidence 4666666554 45444445666788888887788999999998774
No 50
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=28.61 E-value=19 Score=25.58 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=12.3
Q ss_pred CCceEEEEEcCCeE
Q psy4377 21 SCASVFGLQFDRGV 34 (81)
Q Consensus 21 ~GtTvigi~~~~GV 34 (81)
.|+-+|||.+||||
T Consensus 46 ~~aKVIAIaGKGGV 59 (314)
T 3fwy_A 46 TGAKVFAVYGKGGI 59 (314)
T ss_dssp -CCEEEEEECSTTS
T ss_pred CCceEEEEECCCcc
Confidence 68999999999997
No 51
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=22.02 E-value=25 Score=19.00 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.3
Q ss_pred eEEEEEeCccccCccc
Q psy4377 33 GVLLAADSLVSFEGLA 48 (81)
Q Consensus 33 GVvlaaDtr~s~g~~v 48 (81)
=|+|.+|....|+.++
T Consensus 47 ~V~I~aD~~~~y~~vv 62 (74)
T 2jwk_A 47 LFLVGGAKEVPYEEVI 62 (74)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4889999999988665
Done!