RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4377
(81 letters)
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 198
Score = 48.2 bits (114), Expect = 4e-09
Identities = 8/58 (13%), Positives = 22/58 (37%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81
+ G++ V+LA+ V+ L + + +++ L+ D + +
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYI 60
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 47.5 bits (112), Expect = 1e-08
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
++ L + GVLLA D + L + +++ +E G L
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVR 57
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 233
Score = 46.7 bits (110), Expect = 2e-08
Identities = 17/56 (30%), Positives = 37/56 (66%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
SV +++D GV++AAD+L S+ L F +R++ V ++ ++G + +D+Q+++
Sbjct: 10 SVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIER 65
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 45.9 bits (108), Expect = 4e-08
Identities = 11/58 (18%), Positives = 26/58 (44%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81
+ +F GV++AADS + ++++++N +L AD + + +
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 59
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 45.9 bits (108), Expect = 4e-08
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
SV G++F+ GV++AAD L S+ LA F N RI++VN S +LG ++AD QYL+
Sbjct: 10 SVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQ 65
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 45.6 bits (107), Expect = 4e-08
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 25 VFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
+ G+Q VL+A+D + + + + + ++ K++E ILL D
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQF 56
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 44.7 bits (105), Expect = 7e-08
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
++ ++ + ++ D V+F L NA+++ K+ E +L G
Sbjct: 2 TILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMT 55
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 44.4 bits (104), Expect = 1e-07
Identities = 11/58 (18%), Positives = 25/58 (43%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81
++ G+ + G++L AD+ + + N +I ++ +I G AD +
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 59
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 212
Score = 44.0 bits (103), Expect = 2e-07
Identities = 11/58 (18%), Positives = 26/58 (44%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81
+ +F G+++A DS + +R++++N +L AD Q+ + +
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWL 59
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 222
Score = 43.6 bits (102), Expect = 3e-07
Identities = 12/58 (20%), Positives = 30/58 (51%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81
++ G++F+ GV++AAD+ + + N ++ +++ I G AD + + +
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLI 59
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus
influenzae [TaxId: 727]}
Length = 173
Score = 42.5 bits (99), Expect = 5e-07
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNE-SILLGGGNNFADLQYLQD 79
++ ++ + V++ D VS + NA+++ ++ +L G AD L +
Sbjct: 2 TIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFE 58
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 222
Score = 42.5 bits (99), Expect = 6e-07
Identities = 8/54 (14%), Positives = 21/54 (38%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYL 77
++ G+ + +LA D+ + ++ ++I++ AD L
Sbjct: 11 TILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDAL 64
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 42.1 bits (98), Expect = 9e-07
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
+V ++ V +AAD + + + Q+I + + + +G D+Q +
Sbjct: 9 AVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQ 64
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 41.0 bits (95), Expect = 2e-06
Identities = 6/53 (11%), Positives = 22/53 (41%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQY 76
++ + + ++A+D+ +S ++ + K+ + ++G D
Sbjct: 11 TILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLT 63
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 40.5 bits (94), Expect = 3e-06
Identities = 8/53 (15%), Positives = 22/53 (41%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQY 76
+ G+ V++A + V+ E + N +++ +++ + D Q
Sbjct: 2 TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQV 54
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 39.8 bits (92), Expect = 5e-06
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQY 76
+ GL GV++A + + A++I ++ + + + + D Q+
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQF 54
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 205
Score = 39.3 bits (91), Expect = 7e-06
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQY 76
S+ + F GV+L ADS + ++ +V++ I + AD Q
Sbjct: 11 SIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQA 63
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 39.3 bits (91), Expect = 8e-06
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQY 76
++ +QFD GV+L ADS + ++ +++ I + AD Q
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQA 54
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 204
Score = 35.9 bits (82), Expect = 1e-04
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQ 78
V + V +A D + + L + ++I + LG D+ L
Sbjct: 10 IVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLN 63
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 242
Score = 36.2 bits (83), Expect = 1e-04
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
+ G+ GV+L + + L + ++IV+++ I AD + + +
Sbjct: 28 TAIGIATKEGVVLGVEKRAT-SPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIE 82
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 244
Score = 35.8 bits (82), Expect = 2e-04
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
+ G+ G++LAA+ V+ L + +++ K+N+ I + AD + L +
Sbjct: 33 TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILIN 88
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 35.4 bits (81), Expect = 2e-04
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQY 76
+ G+ + GVLLAA+ + L +++I K+NE + +D
Sbjct: 32 TCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANV 84
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus
subtilis [TaxId: 1423]}
Length = 180
Score = 34.4 bits (78), Expect = 5e-04
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKV--NESILLGGGNNFADLQYLQD 79
++F +Q ++ D V+F + + R V+ N +L G + AD L +
Sbjct: 7 TIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 241
Score = 34.2 bits (78), Expect = 5e-04
Identities = 8/56 (14%), Positives = 22/56 (39%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
G++ V+L + + + ++ K++ ++L AD + L +
Sbjct: 30 CAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIE 85
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 33.9 bits (77), Expect = 7e-04
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
SV L F GVL A++ + ++ ++ + + + + + L+
Sbjct: 21 SVVVLTFRDGVLFVAENPST--------ALHKVSELYDRLGFAAVGKYNEFENLRR 68
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 33.1 bits (75), Expect = 0.002
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQDSV 81
+ G++ GV+L AD V L ++I K++E I AD + L D
Sbjct: 33 TAIGIKCKEGVILIADKRVG-SKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRA 89
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 33.1 bits (75), Expect = 0.002
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
+ G++ GV+ + LV + L + +R+ V+ + + AD + L D
Sbjct: 35 TAIGIRCKDGVVFGVEKLVLSK-LYEEGSNKRLFNVDRHVGMAVAGLLADARSLAD 89
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 33.1 bits (75), Expect = 0.002
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
+ G+Q GV LA + ++ L + ++IV+++ I AD + L D
Sbjct: 29 TAIGIQTSEGVCLAVEKRIT-SPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLID 83
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 32.8 bits (74), Expect = 0.002
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
G++ GV+LA + L + ++ + + I L D + L
Sbjct: 33 PSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVH 87
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 244
Score = 32.7 bits (74), Expect = 0.002
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
+ G++ + GV+ A + L++ L + +I V+ I D ++L +
Sbjct: 32 TSIGIKCNDGVVFAVEKLIT-SKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVN 86
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 30.8 bits (69), Expect = 0.011
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
+ G++F GVLL +D V L + ++I +++ + AD + L D
Sbjct: 24 TALGMKFANGVLLISDKKVR-SRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVD 78
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 250
Score = 30.5 bits (68), Expect = 0.011
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQY 76
+ G++ GV++A + S LA+ ++ + I D +
Sbjct: 33 TSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRV 84
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 27.7 bits (61), Expect = 0.11
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
+ GL+ +L A E L + ++I+ V+ I + AD + L +
Sbjct: 31 ATVGLKSKTHAVLVALKRAQSE---LAAHQKKILHVDNHIGISIAGLTADARLLCN 83
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 26.9 bits (59), Expect = 0.25
Identities = 5/44 (11%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGG 67
+ G++ V+L + L ++I +++++ +
Sbjct: 30 TAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMAF 72
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 233
Score = 26.6 bits (58), Expect = 0.31
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 24 SVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
GL+ + +L A + E L ++I+K +E + L D + L +
Sbjct: 33 VTVGLRSNTHAVLVALKRNADE---LSSYQKKIIKCDEHMGLSLAGLAPDARVLSN 85
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 26.5 bits (58), Expect = 0.36
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 23 ASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQY 76
+ ++ ++ V + L + K+ E+I AD +
Sbjct: 36 LTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRS 88
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 243
Score = 24.7 bits (53), Expect = 1.4
Identities = 5/59 (8%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 21 SCASVFGLQFDRGVLLAADSLVSFEGLALFCNAQRIVKVNESILLGGGNNFADLQYLQD 79
+ + ++ ++ + V + L I ++ +I + D +
Sbjct: 29 TNINSLAVRGKDCTVVISQKKVPDK-LLDPTTVSYIFCISRTIGMVVNGPIPDARNAAL 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.411
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 265,368
Number of extensions: 8925
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 37
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)