Query psy4378
Match_columns 136
No_of_seqs 17 out of 19
Neff 3.2
Searched_HMMs 29240
Date Sat Aug 17 00:00:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m50_P N.plumbaginifolia H+-tr 5.3 1.9E+02 0.0064 16.9 0.6 14 5-18 18-31 (31)
2 3lae_A UPF0053 protein HI0107; 3.8 5E+02 0.017 16.3 1.9 21 2-22 49-69 (81)
3 2o3g_A Putative protein; APC85 3.4 5.8E+02 0.02 16.3 1.9 22 2-23 59-80 (92)
4 2pli_A Uncharacterized protein 3.2 6.2E+02 0.021 16.2 1.9 21 2-22 58-78 (91)
5 3llb_A Uncharacterized protein 3.2 6.3E+02 0.022 15.8 1.9 21 2-22 49-69 (83)
6 2r2z_A Hemolysin; APC85144, en 3.1 8.5E+02 0.029 15.4 2.5 22 2-23 56-79 (93)
7 2p4p_A Hypothetical protein HD 3.0 6.8E+02 0.023 15.7 1.9 21 2-22 51-71 (86)
8 2pls_A CBS domain protein; APC 3.0 6.8E+02 0.023 15.7 1.9 21 2-22 53-73 (86)
9 2nqw_A CBS domain protein; PFA 2.9 7.2E+02 0.024 15.9 1.9 21 2-22 60-80 (93)
10 1uv4_A Arabinase, arabinan-end 2.8 6.2E+02 0.021 18.9 1.8 28 12-39 20-47 (293)
No 1
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=5.31 E-value=1.9e+02 Score=16.88 Aligned_cols=14 Identities=21% Similarity=0.601 Sum_probs=10.6
Q ss_pred CCCCcccCCceeEE
Q psy4378 5 NGDSIDDVNTEYTL 18 (136)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (136)
-|-.||.++.-||+
T Consensus 18 KglDi~~i~~~yTV 31 (31)
T 3m50_P 18 KGLDIETIQQSYDI 31 (31)
T ss_dssp TTCCSCCCCCCCCC
T ss_pred hcCChhhhhhcccC
Confidence 36678889988874
No 2
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=3.81 E-value=5e+02 Score=16.25 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=15.0
Q ss_pred CCCCCCCcccCCceeEEEeec
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTH 22 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (136)
+|+-|+++.--+-.|+..+..
T Consensus 49 iP~~Gd~v~~~~~~f~V~~~~ 69 (81)
T 3lae_A 49 IPDEGTICEIDGLLITILEVG 69 (81)
T ss_dssp CCCTTCEEEETTEEEEEEEEE
T ss_pred CCCCCCEEEECCEEEEEEEee
Confidence 588899887666666666553
No 3
>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=3.36 E-value=5.8e+02 Score=16.31 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=14.6
Q ss_pred CCCCCCCcccCCceeEEEeecc
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTHA 23 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (136)
+|+.|+++.--+-.|++.+...
T Consensus 59 iP~~Gd~v~~~~~~f~V~~~~~ 80 (92)
T 2o3g_A 59 IPDVGDFADFHGWRFEVVEKEG 80 (92)
T ss_dssp CCCTTCEEEETTEEEEEEEEET
T ss_pred CCCCCCEEEECCEEEEEEEeeC
Confidence 6888888765556666665543
No 4
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=3.23 E-value=6.2e+02 Score=16.17 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=14.1
Q ss_pred CCCCCCCcccCCceeEEEeec
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTH 22 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (136)
+|+-|+++.--+-.|++.+..
T Consensus 58 iP~~Ge~v~~~~~~f~V~~~d 78 (91)
T 2pli_A 58 LPVRGEKVLIGGLQFTVARAD 78 (91)
T ss_dssp CCCTTCEEEETTEEEEEEEEC
T ss_pred CCCCCCEEEECCEEEEEEEEe
Confidence 688888876555566666544
No 5
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=3.21 E-value=6.3e+02 Score=15.85 Aligned_cols=21 Identities=10% Similarity=0.374 Sum_probs=14.7
Q ss_pred CCCCCCCcccCCceeEEEeec
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTH 22 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (136)
+|+-|+++.--+-.|+.....
T Consensus 49 iP~~Gd~v~~~~~~f~V~~~~ 69 (83)
T 3llb_A 49 LPKRNEVVELGEFRFRVLNAD 69 (83)
T ss_dssp CCCTTCEEEETTEEEEEEEEC
T ss_pred CCCCCCEEEECCEEEEEEEee
Confidence 688898887666666666543
No 6
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=3.06 E-value=8.5e+02 Score=15.38 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=14.3
Q ss_pred CCCCCCCccc--CCceeEEEeecc
Q psy4378 2 LPQNGDSIDD--VNTEYTLVSTHA 23 (136)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~ 23 (136)
+|+-|+++.- -+-.|++.+...
T Consensus 56 iP~~Gd~v~~~~~~~~f~V~~~~~ 79 (93)
T 2r2z_A 56 IPDEGEKPSFEVGNIKLTAEEMEG 79 (93)
T ss_dssp CCCTTCCCEEEETTEEEEEEEEET
T ss_pred CCCCCCEEEEecCCEEEEEEEeeC
Confidence 6888998843 455666665443
No 7
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=2.97 E-value=6.8e+02 Score=15.75 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=13.6
Q ss_pred CCCCCCCcccCCceeEEEeec
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTH 22 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (136)
+|+-|+++.--+-.|+.....
T Consensus 51 iP~~Gd~v~~~~~~f~V~~~~ 71 (86)
T 2p4p_A 51 IPXXTDFVLYDXYXFEIIDTE 71 (86)
T ss_dssp CCCTTCEEEETTEEEEEEEEE
T ss_pred CCCCCcEEEEeeEEEEEEEcc
Confidence 588888876555556665543
No 8
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=2.96 E-value=6.8e+02 Score=15.69 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=13.8
Q ss_pred CCCCCCCcccCCceeEEEeec
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTH 22 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (136)
+|+-|+++.--+-.|+.....
T Consensus 53 iP~~Gd~v~~~~~~f~V~~~~ 73 (86)
T 2pls_A 53 LPQTGDITFWENWRLEVIDMD 73 (86)
T ss_dssp CCCTTCEEEETTEEEEEEEEE
T ss_pred CCCCCCEEEECCEEEEEEEee
Confidence 588888876555566665543
No 9
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Probab=2.85 E-value=7.2e+02 Score=15.87 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=14.1
Q ss_pred CCCCCCCcccCCceeEEEeec
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTH 22 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (136)
+|+-|++|.--+-.|++....
T Consensus 60 iP~~Gd~v~~~~~~f~V~~~d 80 (93)
T 2nqw_A 60 LPHVGDTAVYEPFRFQVTQMD 80 (93)
T ss_dssp CCCTTCEEEETTEEEEEEEEC
T ss_pred CCCCCCEEEECCEEEEEEEee
Confidence 688898886555566666543
No 10
>1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase, propeller, catalysis; 1.50A {Bacillus subtilis} SCOP: b.67.2.1
Probab=2.81 E-value=6.2e+02 Score=18.88 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=22.5
Q ss_pred CCceeEEEeeccccccCCcccccCcccc
Q psy4378 12 VNTEYTLVSTHANETKGMRQYEDNTLVK 39 (136)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~e~~~lvk 39 (136)
++..|-+++|+.....|.+.+.+.+|++
T Consensus 20 ~~g~yYl~~t~~~~~~~i~i~~S~DLv~ 47 (293)
T 1uv4_A 20 EGSSWYALGTGLTEERGLRVLKSSDAKN 47 (293)
T ss_dssp ETTEEEEEEECCTTSSBEEEEEESSSSS
T ss_pred ECCEEEEEEcCCCCCCceEEEECCCCCC
Confidence 4667999999876677888888888875
Done!