Query psy4378
Match_columns 136
No_of_seqs 17 out of 19
Neff 3.2
Searched_HMMs 13730
Date Sat Aug 17 00:00:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4378.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4378hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uv4a1 b.67.2.1 (A:3-293) End 8.2 60 0.0044 22.7 1.2 29 11-39 17-45 (291)
2 d2o3ga1 d.145.1.4 (A:180-255) 7.2 1.1E+02 0.0077 18.1 1.9 23 2-24 43-65 (76)
3 d2nqwa1 d.145.1.4 (A:4-90) Hyp 6.4 1.3E+02 0.0091 18.0 1.9 23 2-24 54-76 (87)
4 d2plsa1 d.145.1.4 (A:345-428) 6.0 1.3E+02 0.0097 17.7 1.9 23 2-24 51-73 (84)
5 d2oaia1 d.145.1.4 (A:5-91) Hem 5.7 1.4E+02 0.01 17.8 1.9 23 2-24 54-76 (87)
6 d2o1ra1 d.145.1.4 (A:1-78) Hyp 4.8 1.8E+02 0.013 17.0 1.9 23 2-24 46-68 (78)
7 d3deda1 d.145.1.4 (A:341-427) 3.9 2.2E+02 0.016 16.8 1.8 23 2-24 54-76 (87)
8 d2p13a1 d.145.1.4 (A:431-515) 3.8 1.8E+02 0.013 17.2 1.3 23 2-24 53-75 (85)
9 d1laba_ b.84.1.1 (A:) Lipoyl d 3.3 4.4E+02 0.032 15.4 2.9 18 2-23 6-23 (80)
10 d1pmra_ b.84.1.1 (A:) Lipoyl d 3.2 3.7E+02 0.027 15.8 2.5 31 2-45 7-37 (80)
No 1
>d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]}
Probab=8.16 E-value=60 Score=22.71 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=24.4
Q ss_pred cCCceeEEEeeccccccCCcccccCcccc
Q psy4378 11 DVNTEYTLVSTHANETKGMRQYEDNTLVK 39 (136)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~e~~~lvk 39 (136)
-++-.|-+++|+.+...|.+.+.+.+|++
T Consensus 17 ~~~g~YY~~~t~~~~~~g~~i~~S~DL~~ 45 (291)
T d1uv4a1 17 KEGSSWYALGTGLTEERGLRVLKSSDAKN 45 (291)
T ss_dssp EETTEEEEEEECCTTSSBEEEEEESSSSS
T ss_pred EECCEEEEEEecCCCCCcEEEEECCCCCC
Confidence 45667889999988888999999998875
No 2
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}
Probab=7.25 E-value=1.1e+02 Score=18.05 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=18.4
Q ss_pred CCCCCCCcccCCceeEEEeeccc
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTHAN 24 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (136)
+|+.|+++.-=+-.|++.+..++
T Consensus 43 iP~~Ge~v~~~~~~f~V~~~~~~ 65 (76)
T d2o3ga1 43 IPDVGDFADFHGWRFEVVEKEGQ 65 (76)
T ss_dssp CCCTTCEEEETTEEEEEEEEETT
T ss_pred CCCCCCEEEECCEEEEEEEeeCC
Confidence 68999998887888888776655
No 3
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}
Probab=6.38 E-value=1.3e+02 Score=17.98 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=18.3
Q ss_pred CCCCCCCcccCCceeEEEeeccc
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTHAN 24 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (136)
+|+.|+++.--+-.|+..+...+
T Consensus 54 iP~~Ge~v~~~~~~f~V~~~~~~ 76 (87)
T d2nqwa1 54 LPHVGDTAVYEPFRFQVTQMDKR 76 (87)
T ss_dssp CCCTTCEEEETTEEEEEEEECSS
T ss_pred cccCCeEEEECCEEEEEEEccCC
Confidence 79999999888888888766544
No 4
>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}
Probab=6.00 E-value=1.3e+02 Score=17.73 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=18.1
Q ss_pred CCCCCCCcccCCceeEEEeeccc
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTHAN 24 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (136)
+|+-|+++.--+-.|++.+...+
T Consensus 51 iP~~Ge~v~~~~~~f~V~~~~~~ 73 (84)
T d2plsa1 51 LPQTGDITFWENWRLEVIDMDSK 73 (84)
T ss_dssp CCCTTCEEEETTEEEEEEEEETT
T ss_pred cCCCCCEEEECCEEEEEEEeeCC
Confidence 68999999888888887776544
No 5
>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}
Probab=5.72 E-value=1.4e+02 Score=17.84 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=18.4
Q ss_pred CCCCCCCcccCCceeEEEeeccc
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTHAN 24 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (136)
+|+.|+++.--+-.|+......+
T Consensus 54 iP~~Ge~v~~~~~~f~V~~~~~~ 76 (87)
T d2oaia1 54 IPHVGEYFDWAGWRIEIVDLDGA 76 (87)
T ss_dssp CCCTTCEEEETTEEEEEEEEETT
T ss_pred CCCCCCEEEECCEEEEEEEeeCC
Confidence 68999999888888888776554
No 6
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}
Probab=4.83 E-value=1.8e+02 Score=16.98 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=17.3
Q ss_pred CCCCCCCcccCCceeEEEeeccc
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTHAN 24 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (136)
+|..|+++.--+-.|+..+...+
T Consensus 46 iP~~Ge~v~~~~~~f~V~~~~~~ 68 (78)
T d2o1ra1 46 IPDEGTICEIDGLLITILEVGDN 68 (78)
T ss_dssp CCCTTCEEEETTEEEEEEEEETT
T ss_pred CCCCCCEEEECCEEEEEEEccCC
Confidence 68889988887777777765543
No 7
>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}
Probab=3.89 E-value=2.2e+02 Score=16.78 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=17.1
Q ss_pred CCCCCCCcccCCceeEEEeeccc
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTHAN 24 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (136)
+|+-|+++.--+-.|++.+...+
T Consensus 54 iP~~Ge~v~~~~~~f~V~~~d~~ 76 (87)
T d3deda1 54 VPSVTDRFEWNGFSFEVVDMDRT 76 (87)
T ss_dssp SCCTTCEEEETTEEEEEEEEETT
T ss_pred CCCCCCEEEECCEEEEEEEeeCC
Confidence 68889998877777777765443
No 8
>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}
Probab=3.80 E-value=1.8e+02 Score=17.19 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=16.4
Q ss_pred CCCCCCCcccCCceeEEEeeccc
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTHAN 24 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (136)
+|..|+++.--+-.|+......+
T Consensus 53 iP~~Ge~v~~~~~~f~V~~~~~~ 75 (85)
T d2p13a1 53 IPAAGEQITVDGLIFEIVSVNKH 75 (85)
T ss_dssp CCCTTCEEEETTEEEEECCBCSS
T ss_pred CCCCCCEEEECCEEEEEEEeeCC
Confidence 68889988877767766655443
No 9
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.30 E-value=4.4e+02 Score=15.44 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=11.3
Q ss_pred CCCCCCCcccCCceeEEEeecc
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTHA 23 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (136)
+|+-|+++. +.+++.-|.
T Consensus 6 ~P~lg~~~~----eg~i~~w~v 23 (80)
T d1laba_ 6 LPDIGEGIH----EGEIVKWFV 23 (80)
T ss_dssp CSCSSSTTC----SEEEEECCC
T ss_pred CCCCCCCce----eEEEEEEEe
Confidence 577777765 456666554
No 10
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}
Probab=3.20 E-value=3.7e+02 Score=15.85 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=0.0
Q ss_pred CCCCCCCcccCCceeEEEeeccccccCCcccccCcccccCCcce
Q psy4378 2 LPQNGDSIDDVNTEYTLVSTHANETKGMRQYEDNTLVKEDSTLV 45 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~lvke~~~lV 45 (136)
+|.-|.++ ++.+++.-|..+- +-|++|++++
T Consensus 7 ~P~lg~~~----~eg~i~~w~v~~G---------d~V~~gd~l~ 37 (80)
T d1pmra_ 7 VPDLPESV----ADATVATWHKKPG---------DAVVRDEVLV 37 (80)
T ss_dssp CCCCCSCC----SCEECCBCCCCTT---------CCBSSSCCBC
T ss_pred CCCCCCCc----cEEEEEEEEeCCC---------CEEcCCCEEE
Done!