RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4378
         (136 letters)



>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
          Length = 977

 Score = 26.8 bits (59), Expect = 5.2
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 55  DSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKE-DST 113
           +  L K  N L+   +T     ++L KE   L KE+N L+K+D   +K +   V E +  
Sbjct: 200 EEQLEKLRNELLIRGATEGLCVHSLSKELDVL-KEENMLLKDDIQFLKAELIEVAETEER 258

Query: 114 LVKEDNTLVKEDSTL 128
           + K    L KE S L
Sbjct: 259 VFK----LEKERSLL 269


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.299    0.121    0.301 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,803,586
Number of extensions: 480217
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 20
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 54 (24.9 bits)