RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4378
         (136 letters)



>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
           oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
           {Saccharomyces cerevisiae}
          Length = 287

 Score = 26.1 bits (58), Expect = 3.9
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 12  VNTEYTLVSTHANETKGMRQYEDNT-LVKED 41
           V TE++LV    NE +    Y+D T L+ +D
Sbjct: 221 VETEFSLVRYRGNEEQAKNVYKDTTPLMADD 251


>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
           {Pseudomonas aeruginosa}
          Length = 272

 Score = 26.0 bits (58), Expect = 4.5
 Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 12  VNTEYTLVSTHANETKGMRQYEDNT-LVKED 41
             +E++LV    ++ +  + Y     +  ED
Sbjct: 204 CESEFSLVRFGGDQARYDKTYAGAHPIQPED 234


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.299    0.121    0.301 

Gapped
Lambda     K      H
   0.267   0.0739    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,527,590
Number of extensions: 77590
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 4
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 52 (23.8 bits)