BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4379
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 329 bits (843), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 201/273 (73%), Gaps = 7/273 (2%)
Query: 97 SGVKPLER-NSLLKISHRTSLFSSP----GIGDCFVRIHKEQGTLSFWRGNSANILRYFP 151
+ V P+ER LL++ H + S+ GI DC VRI KEQG LSFWRGN AN++RYFP
Sbjct: 23 TAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82
Query: 152 AQALNFALKDKYKQIFFQGVDKNKEFGKYFLSNMLSGGAAGLTSITFVYPLDFARTRLGA 211
QALNFA KDKYKQIF GVD++K+F +YF N+ SGGAAG TS+ FVYPLDFARTRL A
Sbjct: 83 TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA 142
Query: 212 DVGKSPAEREFKGVTHCIKKIFATDGVRGLYRGYVCSLWAIFIYRAIYFGIFDTSKAM-- 269
DVGK A+REF G+ +CI KIF +DG+RGLY+G+ S+ I IYRA YFG++DT+K M
Sbjct: 143 DVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202
Query: 270 RSHNSGIFTTWCIAQSVTTLAGVVTYPLDTVRRRMMMQAGLPPQEVMYTGTGHCITKVIQ 329
N I +W IAQ+VT +AG+V+YP DTVRRRMMMQ+G ++MYTGT C K+ +
Sbjct: 203 DPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAK 262
Query: 330 LEGYRGFFKGLTSNLIRGIGAALVLVLYDEIKK 362
EG + FFKG SN++RG+G A VLVLYDEIKK
Sbjct: 263 DEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 295
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 181 FLSNMLSGGAAGLTSITFVYPLDFARTRLGADVGKS----PAEREFKGVTHCIKKIFATD 236
FL + L+GG A S T V P++ R +L V + AE+++KG+ C+ +I
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIE--RVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64
Query: 237 GVRGLYRGYVCSLWAIF-----------IYRAIYFGIFDTSKAMRSHNSGIFTTWCIAQS 285
G +RG + ++ F Y+ I+ G D K + +G + A
Sbjct: 65 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGG-AAG 123
Query: 286 VTTLAGVVTYPLDTVRRRMMMQAGLPPQEVMYTGTGHCITKVIQLEGYRGFFKGLTSNLI 345
T+L V YPLD R R+ G + +TG G+CITK+ + +G RG ++G + +
Sbjct: 124 ATSLCFV--YPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS-V 180
Query: 346 RG--IGAALVLVLYDEIKKVTPQ 366
+G I A +YD K + P
Sbjct: 181 QGIIIYRAAYFGVYDTAKGMLPD 203
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 10/185 (5%)
Query: 186 LSGGAAGLTSITFVYPLDFARTRL---GADVG--KSPAEREFKGVTHCIKKIFATDGVRG 240
L G A + +PLD A+ RL G G ++ A +++GV I + T+G R
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 241 LYRGYVCSLWAIFIYRAIYFGIFDTSKAM---RSHNSGIFTTWCIAQSVTTLAGVVTYPL 297
LY G V L + ++ G++D+ K S ++GI + + LA V P
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPT 125
Query: 298 DTVRRRMMMQAGLPPQEVMYTGTGHCITKVIQLEGYRGFFKGLTSNLIR-GIGAALVLVL 356
D V+ R QA Y T + + EG RG +KG + N+ R I LV
Sbjct: 126 DVVKVRFQAQARAGGGR-RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184
Query: 357 YDEIK 361
YD IK
Sbjct: 185 YDLIK 189
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 22/250 (8%)
Query: 121 GIGDCFVRIHKEQGTLSFWRGNSANILRYFPAQALNFALKDKYKQIFFQGVDKNKEFGKY 180
G+ + + + +G S + G A + R ++ L D KQ + +G ++ G
Sbjct: 49 GVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG-SEHAGIG-- 105
Query: 181 FLSNMLSGGAAGLTSITFVYPLDFARTRLGADVGKSPAEREFKGVTHCIKKIFATDGVRG 240
S +L+G G ++ P D + R A ++ R ++ K I +G+RG
Sbjct: 106 --SRLLAGSTTGALAVAVAQPTDVVKVRFQAQA-RAGGGRRYQSTVEAYKTIAREEGIRG 162
Query: 241 LYRGYVCSLWAIFIYRAIYFGIFDTSKA-------MRSHNSGIFTTWCIAQSVTTLAGVV 293
L++G ++ I +D K M FT+ A TT V+
Sbjct: 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTT---VI 219
Query: 294 TYPLDTVRRRMMMQAGLPPQEVMYTGTGHCITKVIQLEGYRGFFKGLTSNLIR-GIGAAL 352
P+D V+ R M A Y GHC +++ EG R F+KG + +R G +
Sbjct: 220 ASPVDVVKTRYMNSA-----LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVV 274
Query: 353 VLVLYDEIKK 362
+ V Y+++K+
Sbjct: 275 MFVTYEQLKR 284
>pdb|3MMP|G Chain G, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|F Chain F, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 589
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Query: 22 IAIHISTHVHTYQQLGVADFSPPHIAWVRLNYLYILTVPASKAQDRCFDSRPGRTLFTRF 81
+A+ STH T ++D SP + A +TVP + DRC PG +F F
Sbjct: 188 LALRASTHFDTR----ISDISPFNKA---------VTVPKNSKTDRCIAIEPGWNMF--F 232
Query: 82 VLGTAGL 88
LG G+
Sbjct: 233 QLGIGGI 239
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Query: 22 IAIHISTHVHTYQQLGVADFSPPHIAWVRLNYLYILTVPASKAQDRCFDSRPGRTLFTRF 81
+A+ STH + ++D SP + A +TVP + DRC PG +F F
Sbjct: 882 LALRASTHF----DIRISDISPFNKA---------VTVPKNSKTDRCIAIEPGWNMF--F 926
Query: 82 VLGTAGL 88
LG G+
Sbjct: 927 QLGIGGI 933
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,799,864
Number of Sequences: 62578
Number of extensions: 441364
Number of successful extensions: 1003
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 6
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)