Query psy4379
Match_columns 370
No_of_seqs 276 out of 2587
Neff 9.5
Searched_HMMs 29240
Date Sat Aug 17 00:01:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1E-59 3.5E-64 431.7 27.3 286 75-364 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.4E-57 8.1E-62 416.9 21.6 274 79-367 3-289 (303)
3 2lck_A Mitochondrial uncouplin 100.0 5.2E-46 1.8E-50 341.5 13.1 257 2-271 22-287 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1.5E-45 5.3E-50 337.5 13.5 257 2-269 28-296 (297)
5 3vjj_A P9-1; 3.00A {Rice black 26.3 40 0.0014 28.9 2.8 35 289-333 274-308 (368)
6 2acm_A Mucin-1; auto-catalytic 19.5 33 0.0011 21.9 0.7 20 120-139 40-59 (66)
7 3f2e_A SIRV coat protein; four 13.3 69 0.0024 21.6 1.1 34 314-347 5-42 (100)
8 3tgu_G UQCRQ, mitochondrial ub 12.2 1.9E+02 0.0066 19.7 3.2 36 134-169 33-68 (81)
9 2a3d_A Protein (de novo three- 9.2 2.2E+02 0.0074 17.8 2.3 15 101-115 10-24 (73)
10 3cx5_H Cytochrome B-C1 complex 8.9 2.9E+02 0.0098 19.4 3.1 37 331-367 42-79 (93)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1e-59 Score=431.67 Aligned_cols=286 Identities=58% Similarity=0.965 Sum_probs=249.0
Q ss_pred chhHHHHhccccchhhhhhcccccccchhHHHHHHhhccCC-----CCCCCcHHHHHHHHhhhcccccccccchhhHHhH
Q psy4379 75 RTLFTRFVLGTAGLAIIICTYYSGVKPLERNSLLKISHRTS-----LFSSPGIGDCFVRIHKEQGTLSFWRGNSANILRY 149 (370)
Q Consensus 75 ~~~~~~~~ag~~~~a~~~~~~~~~~~Pld~ik~r~q~~~~~-----~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~ 149 (370)
.+.+.++++|+ +||++ +.++++|+|+||+|+|++... ...|+++++++++|+++||++|||||+.+++++.
T Consensus 5 ~~~~~~~~aG~--~ag~~--~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~ 80 (297)
T 1okc_A 5 LSFLKDFLAGG--VAAAI--SKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRY 80 (297)
T ss_dssp HHHHHHHHHHH--HHHHH--HHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHH--HHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHH
Confidence 45678999999 99999 999999999999999998642 2268999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHHHHHHHhhhchHHHHHHHHhccCCCCCCccCCCcHHHHH
Q psy4379 150 FPAQALNFALKDKYKQIFFQGVDKNKEFGKYFLSNMLSGGAAGLTSITFVYPLDFARTRLGADVGKSPAEREFKGVTHCI 229 (370)
Q Consensus 150 ~~~~~~~f~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~dviktr~q~~~~~~~~~~~~~~~~~~~ 229 (370)
++..+++|.+||.+|+.+....+............+++|++||++++++++|+|+||+|+|++....+....|+++++++
T Consensus 81 ~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 81 FPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999999996544332222222345778999999999999999999999999999865433456799999999
Q ss_pred HHHHHhcCcceecccchhhhHHHHHHHhHHHhHHHHHHHhhcc--CCChHHHHHHHHHHHHHHHhhhccHHHHHHHHHhh
Q psy4379 230 KKIFATDGVRGLYRGYVCSLWAIFIYRAIYFGIFDTSKAMRSH--NSGIFTTWCIAQSVTTLAGVVTYPLDTVRRRMMMQ 307 (370)
Q Consensus 230 ~~i~~~~G~~glyrG~~~~~~r~~~~~~~~f~~ye~~~~~~~~--~~~~~~~~~~g~~ag~~a~~~t~P~dviktr~q~~ 307 (370)
++|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+ +.+....+++|++||++++++++|+||||+|||.+
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~ 240 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 240 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998763 44567788999999999999999999999999998
Q ss_pred cCCCCCccccCCHHHHHHHHHHhcCcccccccHHHHHHhhhhhHHHHHHHHHHHHHc
Q psy4379 308 AGLPPQEVMYTGTGHCITKVIQLEGYRGFFKGLTSNLIRGIGAALVLVLYDEIKKVT 364 (370)
Q Consensus 308 ~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~l~~~~~~~i~~~~ye~~~~~~ 364 (370)
...++....|.++++|+++|+++||++|||||+.|+++|.+++++.|.+||.+|+.+
T Consensus 241 ~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccceeeehHHHHHHhhC
Confidence 654334457999999999999999999999999999999778899999999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.4e-57 Score=416.95 Aligned_cols=274 Identities=22% Similarity=0.338 Sum_probs=247.3
Q ss_pred HHHhccccchhhhhhcccccccchhHHHHHHhhccCC--------CCCCCcHHHHHHHHhhhcccccccccchhhHHhHh
Q psy4379 79 TRFVLGTAGLAIIICTYYSGVKPLERNSLLKISHRTS--------LFSSPGIGDCFVRIHKEQGTLSFWRGNSANILRYF 150 (370)
Q Consensus 79 ~~~~ag~~~~a~~~~~~~~~~~Pld~ik~r~q~~~~~--------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~ 150 (370)
.++++|+ +||++ +.++++|+|+||+|+|++... ...|+++++++++|+++||++|||||+.+++++.+
T Consensus 3 ~~~~aG~--~ag~~--~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 78 (303)
T 2lck_A 3 VKFLGAG--TAACI--ADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQM 78 (303)
T ss_dssp CHHHHHH--HHHHH--HHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHH
T ss_pred hhHHhHH--HHHHH--HHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHH
Confidence 4689999 99999 999999999999999998652 23689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHHHHHHHhhhchHHHHHHHHhccCCCCCCccCCCcHHHHHH
Q psy4379 151 PAQALNFALKDKYKQIFFQGVDKNKEFGKYFLSNMLSGGAAGLTSITFVYPLDFARTRLGADVGKSPAEREFKGVTHCIK 230 (370)
Q Consensus 151 ~~~~~~f~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~ 230 (370)
|..+++|.+||.+|+.+.+..+ . .+....+++|++||++++++++|+|+||+|+|++... +...+|++.+++++
T Consensus 79 ~~~~i~f~~ye~~k~~~~~~~~-~----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-~~~~~~~~~~~~~~ 152 (303)
T 2lck_A 79 SFASVRIGLYDSVKQFYTKGSE-H----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-GGGRRYQSTVEAYK 152 (303)
T ss_dssp HHHHHTTTHHHHHHHHHSCCCS-S----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-CCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCc-C----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-CCCCCCCCHHHHHH
Confidence 9999999999999998865322 1 3457789999999999999999999999999998542 23457899999999
Q ss_pred HHHHhcCcceecccchhhhHHHHHHHhHHHhHHHHHHHhhcc----CCChHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q psy4379 231 KIFATDGVRGLYRGYVCSLWAIFIYRAIYFGIFDTSKAMRSH----NSGIFTTWCIAQSVTTLAGVVTYPLDTVRRRMMM 306 (370)
Q Consensus 231 ~i~~~~G~~glyrG~~~~~~r~~~~~~~~f~~ye~~~~~~~~----~~~~~~~~~~g~~ag~~a~~~t~P~dviktr~q~ 306 (370)
+|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+ +.+....+++|++||++++++++|+|+||+|||.
T Consensus 153 ~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~ 232 (303)
T 2lck_A 153 TIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMN 232 (303)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998863 3456678999999999999999999999999999
Q ss_pred hcCCCCCccccCCHHHHHHHHHHhcCcccccccHHHHHHh-hhhhHHHHHHHHHHHHHchhh
Q psy4379 307 QAGLPPQEVMYTGTGHCITKVIQLEGYRGFFKGLTSNLIR-GIGAALVLVLYDEIKKVTPQM 367 (370)
Q Consensus 307 ~~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~l~~-~~~~~i~~~~ye~~~~~~~~~ 367 (370)
+.. ..|.++++|+++++++||++|||||+.|+++| .|.+++.|.+||.+|+.+.+.
T Consensus 233 ~~~-----~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 233 SAL-----GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp CCS-----SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred ccc-----cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 753 35899999999999999999999999999999 889999999999999988654
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.2e-46 Score=341.46 Aligned_cols=257 Identities=13% Similarity=0.178 Sum_probs=213.6
Q ss_pred hhhhhhhhhhhhhccC-----ccceeeeecchhhhHHHHhhccccCCCcceeEeeccceeeeccchhhhhh-hhcCC-CC
Q psy4379 2 VEILESGVQQTILHMP-----SLTHIAIHISTHVHTYQQLGVADFSPPHIAWVRLNYLYILTVPASKAQDR-CFDSR-PG 74 (370)
Q Consensus 2 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~eG~~gl~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~ 74 (370)
+|++|++.|......+ ...+++..++++++++++||++|||+|+.+..+...+..++++..+...+ .+... ++
T Consensus 22 ld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~ 101 (303)
T 2lck_A 22 LDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEH 101 (303)
T ss_dssp HHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSS
T ss_pred HHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 6999999986543221 13457888999999999999999999988876655554444333332222 22221 24
Q ss_pred chhHHHHhccccchhhhhhcccccccchhHHHHHHhhccCC--CCCCCcHHHHHHHHhhhcccccccccchhhHHhHhHH
Q psy4379 75 RTLFTRFVLGTAGLAIIICTYYSGVKPLERNSLLKISHRTS--LFSSPGIGDCFVRIHKEQGTLSFWRGNSANILRYFPA 152 (370)
Q Consensus 75 ~~~~~~~~ag~~~~a~~~~~~~~~~~Pld~ik~r~q~~~~~--~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~ 152 (370)
.+...++++|+ +||++ +.++++|+|+||+|+|++... ...|+++++++++|+++||++|||||+.+++++.+|.
T Consensus 102 ~~~~~~~~ag~--~ag~~--~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 177 (303)
T 2lck_A 102 AGIGSRLLAGS--TTGAL--AVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIV 177 (303)
T ss_dssp CCHHHHHHHHH--HHHHH--HHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHH--HHHHH--HHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHH
Confidence 56778999999 99999 999999999999999998642 2368999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHHHHHHHhhhchHHHHHHHHhccCCCCCCccCCCcHHHHHHHH
Q psy4379 153 QALNFALKDKYKQIFFQGVDKNKEFGKYFLSNMLSGGAAGLTSITFVYPLDFARTRLGADVGKSPAEREFKGVTHCIKKI 232 (370)
Q Consensus 153 ~~~~f~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~i 232 (370)
.+++|.+||.+|+.+.+..... .+....+++|++||++++++++|+|+||+|+|++.. ..|+++++|+++|
T Consensus 178 ~~i~f~~ye~~k~~l~~~~~~~----~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-----~~y~~~~~~~~~i 248 (303)
T 2lck_A 178 NCAELVTYDLIKDTLLKANLMT----DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-----GQYHSAGHCALTM 248 (303)
T ss_dssp HHHHHHHHHHHHHTTTTTTSCC----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-----SSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCC----CchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-----cccCCHHHHHHHH
Confidence 9999999999999886433222 234677999999999999999999999999998743 3689999999999
Q ss_pred HHhcCcceecccchhhhHHHHHHHhHHHhHHHHHHHhhc
Q psy4379 233 FATDGVRGLYRGYVCSLWAIFIYRAIYFGIFDTSKAMRS 271 (370)
Q Consensus 233 ~~~~G~~glyrG~~~~~~r~~~~~~~~f~~ye~~~~~~~ 271 (370)
+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.
T Consensus 249 ~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 249 LRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.5e-45 Score=337.50 Aligned_cols=257 Identities=17% Similarity=0.185 Sum_probs=207.0
Q ss_pred hhhhhhhhhhhhhccC--ccceeeeecchhhhHHHHhhccccCCCcceeEeeccce----eeeccchhhhh-hhhcCCCC
Q psy4379 2 VEILESGVQQTILHMP--SLTHIAIHISTHVHTYQQLGVADFSPPHIAWVRLNYLY----ILTVPASKAQD-RCFDSRPG 74 (370)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~eG~~gl~~g~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~ 74 (370)
+|++|++.|-.....+ ...+++..++++++++++||++|||+|+.+..+...+. |..|+..+... ...+..+.
T Consensus 28 ld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~ 107 (297)
T 1okc_A 28 IERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 107 (297)
T ss_dssp HHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTC
T ss_pred HHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccc
Confidence 6999999997643221 23467788999999999999999999988876655444 44444444421 11111112
Q ss_pred --chhHHHHhccccchhhhhhcccccccchhHHHHHHhhccCC---CCCCCcHHHHHHHHhhhcccccccccchhhHHhH
Q psy4379 75 --RTLFTRFVLGTAGLAIIICTYYSGVKPLERNSLLKISHRTS---LFSSPGIGDCFVRIHKEQGTLSFWRGNSANILRY 149 (370)
Q Consensus 75 --~~~~~~~~ag~~~~a~~~~~~~~~~~Pld~ik~r~q~~~~~---~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~ 149 (370)
.+...++++|+ +||++ +.++++|+|+||+|+|++... ...|+++++++++|+++||++|||||+.+++++.
T Consensus 108 ~~~~~~~~~~ag~--~ag~~--~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~ 183 (297)
T 1okc_A 108 FWRYFAGNLASGG--AAGAT--SLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183 (297)
T ss_dssp HHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HHHHH--HHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHH
Confidence 23467899999 99999 999999999999999998532 2368999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHHHHHHHhhhchHHHHHHHHhccCCCCCCccCCCcHHHHH
Q psy4379 150 FPAQALNFALKDKYKQIFFQGVDKNKEFGKYFLSNMLSGGAAGLTSITFVYPLDFARTRLGADVGKSPAEREFKGVTHCI 229 (370)
Q Consensus 150 ~~~~~~~f~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~dviktr~q~~~~~~~~~~~~~~~~~~~ 229 (370)
+|..+++|.+||.+|+.+.+.. ..+....+++|++||++++++++|+|+||+|+|++....+....|+++++|+
T Consensus 184 ~~~~~~~f~~ye~~k~~~~~~~------~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~ 257 (297)
T 1okc_A 184 IIYRAAYFGVYDTAKGMLPDPK------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCW 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHSSCGGG------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCC------CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHH
Confidence 9999999999999998764321 1234677899999999999999999999999999855433445799999999
Q ss_pred HHHHHhcCcceecccchhhhHHHHHHHhHHHhHHHHHHHh
Q psy4379 230 KKIFATDGVRGLYRGYVCSLWAIFIYRAIYFGIFDTSKAM 269 (370)
Q Consensus 230 ~~i~~~~G~~glyrG~~~~~~r~~~~~~~~f~~ye~~~~~ 269 (370)
++|+++||++|||||+.|+++|. +.+++.|.+||.+|+.
T Consensus 258 ~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 258 RKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp HHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred HHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 99999999999999999999996 5789999999999875
No 5
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=26.27 E-value=40 Score=28.93 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=26.6
Q ss_pred HHHhhhccHHHHHHHHHhhcCCCCCccccCCHHHHHHHHHHhcCc
Q psy4379 289 LAGVVTYPLDTVRRRMMMQAGLPPQEVMYTGTGHCITKVIQLEGY 333 (370)
Q Consensus 289 ~a~~~t~P~dviktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~ 333 (370)
+|++-.||||.+|-.++..- +....+++.+.+||+
T Consensus 274 LaTFdnypfdllRfqL~Sli----------stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSLI----------STPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSCC----------CCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhhc----------cChHHHHHHHHhcCc
Confidence 46677899999987776543 445888999999884
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=19.48 E-value=33 Score=21.90 Aligned_cols=20 Identities=30% Similarity=0.482 Sum_probs=17.1
Q ss_pred CcHHHHHHHHhhhccccccc
Q psy4379 120 PGIGDCFVRIHKEQGTLSFW 139 (370)
Q Consensus 120 ~~~~~~~~~i~~~~G~~gly 139 (370)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788899999999999886
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=13.25 E-value=69 Score=21.56 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=25.1
Q ss_pred ccccCCHHHHHHHHHHhcCc----ccccccHHHHHHhh
Q psy4379 314 EVMYTGTGHCITKVIQLEGY----RGFFKGLTSNLIRG 347 (370)
Q Consensus 314 ~~~y~~~~~~~~~i~~~eG~----~~lyrG~~~~l~~~ 347 (370)
.+++.+.-+-+..++.+.|+ ++.|.|+.....|+
T Consensus 5 vpkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 5 VPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp ---CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 35677777778888888887 67899998887774
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=12.20 E-value=1.9e+02 Score=19.74 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=27.4
Q ss_pred ccccccccchhhHHhHhHHHHHHHHHHHHHHHHHhc
Q psy4379 134 GTLSFWRGNSANILRYFPAQALNFALKDKYKQIFFQ 169 (370)
Q Consensus 134 G~~glyrG~~~~l~~~~~~~~~~f~~y~~~~~~l~~ 169 (370)
|+...+|-+...++..+|..++.+.+|++.++....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 444555666777888889999999999998887643
No 9
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=9.17 E-value=2.2e+02 Score=17.79 Aligned_cols=15 Identities=13% Similarity=-0.183 Sum_probs=11.4
Q ss_pred chhHHHHHHhhccCC
Q psy4379 101 PLERNSLLKISHRTS 115 (370)
Q Consensus 101 Pld~ik~r~q~~~~~ 115 (370)
-+..||+|+|+-..+
T Consensus 10 rlaaiktrlqalggs 24 (73)
T 2a3d_A 10 RLAAIKTRLQALGGS 24 (73)
T ss_dssp HHHHHHHHHHHCSSG
T ss_pred HHHHHHHHHHHhcCc
Confidence 456799999987654
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=8.86 E-value=2.9e+02 Score=19.43 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=27.7
Q ss_pred cCcccccccHHHHHHh-hhhhHHHHHHHHHHHHHchhh
Q psy4379 331 EGYRGFFKGLTSNLIR-GIGAALVLVLYDEIKKVTPQM 367 (370)
Q Consensus 331 eG~~~lyrG~~~~l~~-~~~~~i~~~~ye~~~~~~~~~ 367 (370)
+|+...+|-+.-.++. .|+..+.+.+|+..++.....
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 4666677777777778 788999999998887765443
Done!