RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4379
(370 letters)
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 315 bits (810), Expect = e-107
Identities = 132/277 (47%), Positives = 181/277 (65%), Gaps = 17/277 (6%)
Query: 99 VKPLERNSLLK---------ISHRTSLFSSPGIGDCFVRIHKEQGTLSFWRGNSANILRY 149
V P+ER +L S + +S GI +CF R+ KEQG LS WRGN+AN++RY
Sbjct: 25 VAPIERVKMLIQTQDSIPEIKSGKVPRYS--GIVNCFRRVSKEQGVLSLWRGNTANVIRY 82
Query: 150 FPAQALNFALKDKYKQIFFQGVDKNKEFGKYFLSNMLSGGAAGLTSITFVYPLDFARTRL 209
FP QA NFA KD +K +F + ++ +F K+F N+LSGG AG +S+ VYPLDFARTRL
Sbjct: 83 FPTQAFNFAFKDYFKNMFPK-YNQKTDFWKFFGVNILSGGLAGASSLLIVYPLDFARTRL 141
Query: 210 GADVGKSPAEREFKGVTHCIKKIFATDGVRGLYRGYVCSLWAIFIYRAIYFGIFDTSKAM 269
+D+GK +REF G+ C+ KI G LY+G+ S+ I +YR YFG++D++KA+
Sbjct: 142 ASDIGKG-GDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKAL 200
Query: 270 ---RSHNSGIFTTWCIAQSVTTLAGVVTYPLDTVRRRMMMQAGLPP-QEVMYTGTGHCIT 325
N+ I W +AQ+VT LAG+++YP DTVRRRMMM +G E+ YTGT C
Sbjct: 201 LFGNDKNTNILYKWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWK 260
Query: 326 KVIQLEGYRGFFKGLTSNLIRGIGAALVLVLYDEIKK 362
K+++ EG GFFKG +N++RG G ALVLV YDE++K
Sbjct: 261 KILKNEGLGGFFKGAWANVLRGAGGALVLVFYDELQK 297
Score = 49.0 bits (117), Expect = 1e-06
Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 14/177 (7%)
Query: 175 KEFGKYFLSNMLSGGAAGLTSITFVYPLDFARTRLGA-----DVGKSPAEREFKGVTHCI 229
+ F ++ L GG + S T V P++ + + ++ R + G+ +C
Sbjct: 1 MDKKTNFATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPR-YSGIVNCF 59
Query: 230 KKIFATDGVRGLYRGYVCSLWAIFIYRAIYFGIFDTSKAM---RSHNSGIFTTWCIAQSV 286
+++ GV L+RG ++ F +A F D K M + + + + +
Sbjct: 60 RRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDFWKFFGVNILS 119
Query: 287 TTLAG----VVTYPLDTVRRRMMMQAGLPPQEVMYTGTGHCITKVIQLEGYRGFFKG 339
LAG ++ YPLD R R+ G +TG C+ K+ + G+ ++G
Sbjct: 120 GGLAGASSLLIVYPLDFARTRLASDIGKGGDR-EFTGLFDCLMKISKQTGFLSLYQG 175
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 91.9 bits (229), Expect = 4e-23
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 180 YFLSNMLSGGAAGLTSITFVYPLDFARTRLGADVGKSPAEREFKGVTHCIKKIFATDGVR 239
FL+++L+GG AG + T YPLD +TRL + + R++KG+ C KKI+ +G+R
Sbjct: 4 SFLASLLAGGIAGAIAATVTYPLDVVKTRLQS--SAAGGSRKYKGILDCFKKIYKEEGIR 61
Query: 240 GLYRGYVCSLWAIFIYRAIYFGIFDTSKAM 269
GLY+G + +L + AIYFG ++T K +
Sbjct: 62 GLYKGLLPNLLRVAPAAAIYFGTYETLKKL 91
Score = 73.8 bits (182), Expect = 2e-16
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 288 TLAGVVTYPLDTVRRRMMMQAGLPPQEVMYTGTGHCITKVIQLEGYRGFFKGLTSNLIRG 347
+A VTYPLD V+ R+ A ++ Y G C K+ + EG RG +KGL NL+R
Sbjct: 17 AIAATVTYPLDVVKTRLQSSAAGGSRK--YKGILDCFKKIYKEEGIRGLYKGLLPNLLRV 74
Query: 348 I-GAALVLVLYDEIKKV 363
AA+ Y+ +KK+
Sbjct: 75 APAAAIYFGTYETLKKL 91
Score = 65.0 bits (159), Expect = 2e-13
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 84 GTAGLAIIICTYYSGVKPLER-NSLLKISHRTSLFSSPGIGDCFVRIHKEQGTLSFWRGN 142
G AG TY PL+ + L+ S GI DCF +I+KE+G ++G
Sbjct: 13 GIAGAIAATVTY-----PLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGL 67
Query: 143 SANILRYFPAQALNFALKDKYKQIFF 168
N+LR PA A+ F + K++
Sbjct: 68 LPNLLRVAPAAAIYFGTYETLKKLLL 93
>gnl|CDD|221532 pfam12328, Rpp20, Rpp20 subunit of nuclear RNase MRP and P. The
nuclear RNase P of Saccharomyces cerevisiae is made up
of at least nine protein subunits; Pop1, Pop3, Pop4,
Pop5, Pop6, Pop7, Pop8, Rpr2 and Rpp1. Many of these
subunits seem to be present also in the RNase MRP, with
the exception of Rpr2 (Rpp21) which is unique to RNase
P. Human nuclear RNase P and MRP appear to contain at
least 10 protein subunits, Rpp14, Rpp20, Rpp21, Rpp25,
Rpp29, Rpp30, Rpp38, Rpp40, hPop1 and hPop5, although
there is recent evidence that not all of these subunits
are shared between P and MRP. Archaeal RNase P has at
least four protein subunits homologous to eukaryotic
RNase P/MRP proteins. In the yeast RNase P, Pop6 and
Pop7 (the Rpp20 homologue) interact with each other and
they are both interaction partners of Pop4; in the human
MRP Rpp25 and Rpp20 interact with each other and Rpp25
binds to Rpp29 (Pop4).
Length = 108
Score = 29.1 bits (66), Expect = 1.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 297 LDTVRRRMMMQAGLPPQEVMYTGTGHCITKVIQL 330
LD +R GL +EV+ G G I K + L
Sbjct: 25 LDKAEKRASKGEGLKLEEVVVKGMGKAIEKALSL 58
>gnl|CDD|198157 smart01089, Connexin_CCC, Gap junction channel protein
cysteine-rich domain.
Length = 67
Score = 27.8 bits (63), Expect = 1.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 53 YLYILTVPASKAQDR--------CFDSRPG-RTLFTRFVLGTAGLAIIIC 93
YLY VP R CF SRP +T+F F+L + + I++
Sbjct: 11 YLYGFQVPPLYKCSRSPCPNTVDCFVSRPTEKTIFLIFMLVVSAICILLN 60
>gnl|CDD|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase.
Length = 597
Score = 29.6 bits (66), Expect = 3.1
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 17/88 (19%)
Query: 166 IFFQGVDKNKEFGKYFL----SNMLSGGAAGLTSITFVYPLDFARTRLGADVGKSPAERE 221
++ G+DK K G YFL + SGG ++T Y D RT +V SP E
Sbjct: 142 LYVPGLDKGK--GLYFLFVKSESKTSGGLPARPALTSYYKSDHFRTSDYDNVYTSPNE-- 197
Query: 222 FKGVTHCIKKIFATDGVRGLYRGYVCSL 249
I +D + +Y +C L
Sbjct: 198 ---------AILCSDSSQSMYAQMLCGL 216
>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and
conversion].
Length = 313
Score = 29.1 bits (66), Expect = 3.5
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 273 NSGIFTTWCIAQSVTTLA-----GVVTYPLDTVRRRMMMQAGLPPQEVMYTGT 320
N+ I IA+++ A VVT P+D + M +G P V+ +GT
Sbjct: 94 NAKIVKD--IAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGT 144
>gnl|CDD|201924 pfam01693, Cauli_VI, Caulimovirus viroplasmin. This family
consists of various caulimovirus viroplasmin proteins.
The viroplasmin protein is encoded by gene VI and is the
main component of viral inclusion bodies or viroplasms.
Inclusions are the site of viral assembly, DNA synthesis
and accumulation. Two domains exist within gene VI
corresponding approximately to the 5' third and middle
third of gene VI, these influence systemic infection in
a light-dependent manner.
Length = 43
Score = 26.3 bits (59), Expect = 3.7
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 11/40 (27%)
Query: 255 YRAIYFGIFDTSKAMRSHNSGIFTTWCIAQS-VTTLAGVV 293
+ A++ G GI+T+W + V G +
Sbjct: 1 FYAVWKG----------RKPGIYTSWEECKKQVKGFPGAI 30
>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes. Members
of this subfamily are tetrameric NAD-dependent
2-hydroxycarboxylate dehydrogenases including LDHs,
L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and
LDH-like malate dehydrogenases (MDH). Dehydrogenases
catalyze the conversion of carbonyl compounds to
alcohols or amino acids. LDHs catalyze the last step of
glycolysis in which pyruvate is converted to L-lactate.
Vertebrate LDHs are non-allosteric, but some bacterial
LDHs are activated by an allosteric effector such as
fructose-1,6-bisphosphate. L-HicDH catalyzes the
conversion of a variety of 2-oxo carboxylic acids with
medium-sized aliphatic or aromatic side chains. MDH is
one of the key enzymes in the citric acid cycle,
facilitating both the conversion of malate to
oxaloacetate and replenishing levels of oxalacetate by
reductive carboxylation of pyruvate. The LDH-like
subfamily is part of the NAD(P)-binding Rossmann fold
superfamily, which includes a wide variety of protein
families including the NAD(P)-binding domains of alcohol
dehydrogenases, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 300
Score = 28.0 bits (63), Expect = 7.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 292 VVTYPLDTVRRRMMMQAGLPPQEVMYTGT 320
VV+ P+D + +GLP V+ +GT
Sbjct: 113 VVSNPVDILTYVAQKLSGLPKNRVIGSGT 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.428
Gapped
Lambda K H
0.267 0.0842 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,166,805
Number of extensions: 1868307
Number of successful extensions: 2003
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1990
Number of HSP's successfully gapped: 20
Length of query: 370
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 272
Effective length of database: 6,590,910
Effective search space: 1792727520
Effective search space used: 1792727520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.7 bits)