RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4379
(370 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 346 bits (891), Expect = e-119
Identities = 161/299 (53%), Positives = 201/299 (67%), Gaps = 19/299 (6%)
Query: 76 TLFTRFVLG-TAGLAIIICTYYSGVKPLERNSLLKI--------SHRTSLFSSPGIGDCF 126
+ F+ G A P+ER +K+ ++ GI DC
Sbjct: 6 SFLKDFLAGGVAAAISKTAVA-----PIER---VKLLLQVQHASKQISAEKQYKGIIDCV 57
Query: 127 VRIHKEQGTLSFWRGNSANILRYFPAQALNFALKDKYKQIFFQGVDKNKEFGKYFLSNML 186
VRI KEQG LSFWRGN AN++RYFP QALNFA KDKYKQIF GVD++K+F +YF N+
Sbjct: 58 VRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLA 117
Query: 187 SGGAAGLTSITFVYPLDFARTRLGADVGKSPAEREFKGVTHCIKKIFATDGVRGLYRGYV 246
SGGAAG TS+ FVYPLDFARTRL ADVGK A+REF G+ +CI KIF +DG+RGLY+G+
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177
Query: 247 CSLWAIFIYRAIYFGIFDTSKAM--RSHNSGIFTTWCIAQSVTTLAGVVTYPLDTVRRRM 304
S+ I IYRA YFG++DT+K M N I +W IAQ+VT +AG+V+YP DTVRRRM
Sbjct: 178 VSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM 237
Query: 305 MMQAGLPPQEVMYTGTGHCITKVIQLEGYRGFFKGLTSNLIRGIGAALVLVLYDEIKKV 363
MMQ+G ++MYTGT C K+ + EG + FFKG SN++RG+G A VLVLYDEIKK
Sbjct: 238 MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKF 296
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 146 bits (370), Expect = 2e-41
Identities = 58/301 (19%), Positives = 113/301 (37%), Gaps = 30/301 (9%)
Query: 77 LFTRFVLG-TAGLAIIICTYYSGVKPLE--------RNSLLKISHRTSLFSSPGIGDCFV 127
+ +F+ TA + T+ PL+ + + + G+ +
Sbjct: 1 MTVKFLGAGTAACIADLITF-----PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTIL 55
Query: 128 RIHKEQGTLSFWRGNSANILRYFPAQALNFALKDKYKQIFFQGVDKNKEFGKYFLSNMLS 187
+ + +G S + G A + R ++ L D KQ + +G + S +L+
Sbjct: 56 TMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG-----IGSRLLA 110
Query: 188 GGAAGLTSITFVYPLDFARTRLGADVGKSPAEREFKGVTHCIKKIFATDGVRGLYRGYVC 247
G G ++ P D + R A ++ R ++ K I +G+RGL++G
Sbjct: 111 GSTTGALAVAVAQPTDVVKVRFQAQ-ARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSP 169
Query: 248 SLWAIFIYRAIYFGIFDTSKAMRSHNSGI---FTTWCIAQSVT-TLAGVVTYPLDTVRRR 303
++ I +D K + + + V+ P+D V+ R
Sbjct: 170 NVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTR 229
Query: 304 MMMQAGLPPQEVMYTGTGHCITKVIQLEGYRGFFKGLTSNLIR-GIGAALVLVLYDEIKK 362
M A Y GHC +++ EG R F+KG + +R G ++ V Y+++K+
Sbjct: 230 YMNSALGQ-----YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
Query: 363 V 363
Sbjct: 285 A 285
Score = 38.8 bits (91), Expect = 0.002
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 121 GIGDCFVRIHKEQGTLSFWRGNSANILRYFPAQALNFALKDKYKQIF 167
G C + + +++G +F++G + LR + F ++ K+
Sbjct: 240 SAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 8e-06
Identities = 55/334 (16%), Positives = 101/334 (30%), Gaps = 114/334 (34%)
Query: 13 ILHMPSLTHIAIHISTHVH-TYQQLGVADFSPPHIAWVRLNYLYILTVPASK-AQDRCFD 70
L SL H + + T QL + + IL P A D
Sbjct: 10 TLSHGSLEH-VLLVPTASFFIASQL-------------QEQFNKILPEPTEGFAADDEPT 55
Query: 71 SRPGRTLFTRFVLG-TAGLAIIICTYYSGVKPLE---RNSLLKISHRTSLFSSPGIGDCF 126
+ L +F LG + L V+P + + +L + F + C+
Sbjct: 56 TPAE--LVGKF-LGYVSSL----------VEPSKVGQFDQVLNLCLTE--FEN-----CY 95
Query: 127 VR---IH--------KEQGTLSFWRGNSANILR-YFPAQAL-NFALKDKYKQIFFQGVDK 173
+ IH + TL + +++ Y A+ + K F+ V +
Sbjct: 96 LEGNDIHALAAKLLQENDTTLV----KTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 174 NK-----EFG------KYF--LSNMLSGGAAGLTSITFVYPL-DFARTRLGADVGKSPAE 219
FG YF L ++ T V L F+ L +++ ++ +
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQ------TYHVLVGDLIKFSAETL-SELIRTTLD 204
Query: 220 REFKGVTHCIKKIFATDG--VRGLYRG--------YVC----SLWAIFIYRAIYFGIF-- 263
E K+F T G + Y+ S I + + ++ +
Sbjct: 205 AE---------KVF-TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 264 ----------DTSKAMRSHNSGIFTTWCIAQSVT 287
K H+ G+ T IA++ +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Score = 42.7 bits (100), Expect = 2e-04
Identities = 71/411 (17%), Positives = 118/411 (28%), Gaps = 144/411 (35%)
Query: 31 HTYQQLGVADFSPPHIAWVRLNYLYILTVPASKAQDRCFD-----SRPGRTLFTRFVLGT 85
TY L V D + L+ L T+ A K + + P T + L +
Sbjct: 178 QTYHVL-VGDLI--KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-LLS 233
Query: 86 AGLA--II----ICTYY-----SGVKPLERNSLLK--ISHRTSLFSSPGI-----GDCFV 127
++ +I + Y G P E S LK H L ++ I + F
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 128 RIHKEQGTLSFWRGNSANILR---YFPAQALNFALKDKYKQIFFQGVDKNKEFGKYFLSN 184
++ T+ F+ G +R +P +L ++ ++ + E + S
Sbjct: 294 VSVRKAITVLFFIG-----VRCYEAYPNTSLPPSI-----------LEDSLENNEGVPSP 337
Query: 185 MLSGGAAGLT---------------------SIT-------FV---YPLDFAR--TRL-- 209
MLS + LT I+ V P L
Sbjct: 338 MLS--ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 210 -----GADVGKSP-AEREFKGVT---------HC--IKKIFATDGVRG-LYRGYVCSLWA 251
G D + P +ER+ K H + A+D + L + V
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP--ASDLINKDLVKNNVS---- 449
Query: 252 IFIYRAIYFGI--FDTSKA--MRSHNSGIFTTWCIAQSVTTLAGVVTYPLDTVRRRMMMQ 307
+ A I +DT +R + I I + L P+
Sbjct: 450 ---FNAKDIQIPVYDTFDGSDLRVLSGSISER--IVDCIIRL------PVK------WET 492
Query: 308 AGLPPQEVMYTGTGHCITKVIQLEGYRGFFKG---LTSNLIRGIGAALVLV 355
T T ++ G G G LT G G +++
Sbjct: 493 T-----------TQFKATHILDF-G-PGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 40.4 bits (94), Expect = 8e-04
Identities = 49/243 (20%), Positives = 76/243 (31%), Gaps = 76/243 (31%)
Query: 3 EILESGVQQTILHMPSLTHIAIHISTHVHTYQQLGVADFSPPHIAWVRLN-YLYILTVPA 61
E ++ V +T H+P+ + IS V+ + L V+ PP + LN L P+
Sbjct: 347 EQVQDYVNKTNSHLPAGKQ--VEISL-VNGAKNLVVS--GPP-QSLYGLNLTLRKAKAPS 400
Query: 62 SKAQDRC-FDSRPGRTLFTRFVLGTAGLAIII---CTYYSGVKPLERNSLLKISHRTSLF 117
Q R F R + RF L + L L+K F
Sbjct: 401 GLDQSRIPFSERKLK-FSNRF------LPVASPFHSHLLVPASDLINKDLVK---NNVSF 450
Query: 118 SSPGIGDCFVRI---HKEQGTLSFWRGNSANILRYFPAQALNFALKDKYKQIFFQGVD-- 172
++ I +I G S R S +I + D I V
Sbjct: 451 NAKDI-----QIPVYDTFDG--SDLRVLSGSISE---------RIVD---CIIRLPVKWE 491
Query: 173 ---KNK-----EFGKYFLSNMLSGGAAGLTSITFVYPLDFARTRLG--------ADVGKS 216
+ K +FG GGA+GL +T R + G + +
Sbjct: 492 TTTQFKATHILDFG--------PGGASGLGVLT-------HRNKDGTGVRVIVAGTLDIN 536
Query: 217 PAE 219
P +
Sbjct: 537 PDD 539
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.005
Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 50/218 (22%)
Query: 52 NYLYILTVPASKAQDRCFDS-RPG--RTLFTRFVLGTAGLAI---IICTYYSGVKP---- 101
N+ ++ + + + P R +F R + I ++ + V
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 102 -----LERNSLLKISHRTSLFSSPGI-------GDCFVRIHKEQGTLSFWRGNSANILRY 149
L + SL++ + S S P I + +H+ ++ + NI +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR---SIV----DHYNIPKT 458
Query: 150 FPAQALNFALKDKYKQIFFQGVDKNKEFGKYFLSNMLSGGAAGLTSITFVYPLDFARTRL 209
F + L D+Y F+ + L N+ L + F+ F ++
Sbjct: 459 FDSDDLIPPYLDQY---FYS-------HIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKI 507
Query: 210 GADVGKSPAEREFKGVTHCIKKIFATDGVRGLYRGYVC 247
D S A + + ++++ Y+ Y+C
Sbjct: 508 RHD---STAWNASGSILNTLQQL-------KFYKPYIC 535
Score = 30.6 bits (68), Expect = 1.1
Identities = 30/185 (16%), Positives = 54/185 (29%), Gaps = 62/185 (33%)
Query: 14 LHMPSLTHIAIHISTH---VHTYQQLGVA---DFSPPHIAWVRLNYLY--I---LTVPAS 62
+++ + + H V Y D PP++ Y Y I L +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----QYFYSHIGHHL---KN 483
Query: 63 KAQDRCFDSRPGRTLFT--RFVLGTAGLAIIICTYYSGVKPLERNSLLKISHRTSLFSSP 120
R +F RF LE+ KI H ++ +++
Sbjct: 484 IEHPERMTLF--RMVFLDFRF--------------------LEQ----KIRHDSTAWNAS 517
Query: 121 G-IGDCF--VRIHKEQGT-------------LSFWRGNSANILRYFPAQALNFALKDKYK 164
G I + ++ +K L F N++ L AL + +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 165 QIFFQ 169
IF +
Sbjct: 578 AIFEE 582
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.017
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 28/54 (51%)
Query: 103 ERNSLLKISHRTSLFSSPGIGDCFVRIHKEQGTLSFWRGNSANILRYFPAQALN 156
E+ +L K+ L+ + +SA PA A+
Sbjct: 18 EKQALKKLQASLKLY-AD---------------------DSA------PALAIK 43
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 30.7 bits (68), Expect = 0.90
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 233 FATDGVRGLYRGYVCSLWAIF 253
G +RG+ CSLW +F
Sbjct: 363 VGCQGSEPHFRGFPCSLWVLF 383
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 29.6 bits (65), Expect = 2.0
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 16/96 (16%)
Query: 158 ALKDKYKQIFFQGVDKNKEFGKYFLSNMLSGGAAGLTSITFVYPLDFARTRLGADVGKSP 217
AL+D + + L ++ + T ++ + + SP
Sbjct: 229 ALEDFVLLVKDSLPSIGADGVVSALESITAERP--FTVASWQDAVVKSGIPFDG----SP 282
Query: 218 AEREFKGVTHCIKKIFATDGVRGLYRGYVCSLWAIF 253
++ C G YRG+ C +W +
Sbjct: 283 RNVRWRT---C-------RGSSPQYRGFPCGMWLLL 308
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP;
1.87A {Homo sapiens} PDB: 3co6_C*
Length = 110
Score = 27.8 bits (62), Expect = 2.6
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 104 RNSLLKISHRTSLFSSPGIGDCFVRIHKEQ-GTLSFWR 140
+NS I H SL F+++H E G S+W
Sbjct: 74 KNS---IRHNLSL------HSKFIKVHNEATGKSSWWM 102
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 28.0 bits (62), Expect = 6.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 32 TYQQLGVADFSPPHIAWVRLNYLYILTVPASKAQDRCFDSRPGRTLFTRFVLGTAGL 88
T+ + ++D SP + A +TVP + DRC PG +F F LG G+
Sbjct: 888 THFDIRISDISPFNKA---------VTVPKNSKTDRCIAIEPGWNMF--FQLGIGGI 933
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 27.5 bits (62), Expect = 7.2
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 13/46 (28%)
Query: 2 VEILESGVQQTI-----LHMPSLTHIAIHISTHVHTYQQL--GVAD 40
+L+ V+ + L MP+L +TH H L GVA+
Sbjct: 29 KRVLQGEVKVDLDLSGKLVMPAL------FNTHTHAPMTLLRGVAE 68
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide,
alternative splicing, FAD, flavoprotein, glycoprotein,
GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo
sapiens} PDB: 3lli_A*
Length = 261
Score = 27.0 bits (59), Expect = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 237 GVRGLYRGYVCSLWAIF 253
G +RG+ CSLW +F
Sbjct: 110 GSEPHFRGFPCSLWVLF 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.428
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,780,238
Number of extensions: 348739
Number of successful extensions: 925
Number of sequences better than 10.0: 1
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 21
Length of query: 370
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 275
Effective length of database: 4,049,298
Effective search space: 1113556950
Effective search space used: 1113556950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.8 bits)