RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4379
(370 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 139 bits (351), Expect = 2e-39
Identities = 161/284 (56%), Positives = 199/284 (70%), Gaps = 12/284 (4%)
Query: 84 GTAGLAIIICTYYSGVKPLER-NSLLKISHRTSLFSSP----GIGDCFVRIHKEQGTLSF 138
G A P+ER LL++ H + S+ GI DC VRI KEQG LSF
Sbjct: 14 GVAAAISKTAVA-----PIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 68
Query: 139 WRGNSANILRYFPAQALNFALKDKYKQIFFQGVDKNKEFGKYFLSNMLSGGAAGLTSITF 198
WRGN AN++RYFP QALNFA KDKYKQIF GVD++K+F +YF N+ SGGAAG TS+ F
Sbjct: 69 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF 128
Query: 199 VYPLDFARTRLGADVGKSPAEREFKGVTHCIKKIFATDGVRGLYRGYVCSLWAIFIYRAI 258
VYPLDFARTRL ADVGK A+REF G+ +CI KIF +DG+RGLY+G+ S+ I IYRA
Sbjct: 129 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 188
Query: 259 YFGIFDTSKAM--RSHNSGIFTTWCIAQSVTTLAGVVTYPLDTVRRRMMMQAGLPPQEVM 316
YFG++DT+K M N I +W IAQ+VT +AG+V+YP DTVRRRMMMQ+G ++M
Sbjct: 189 YFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIM 248
Query: 317 YTGTGHCITKVIQLEGYRGFFKGLTSNLIRGIGAALVLVLYDEI 360
YTGT C K+ + EG + FFKG SN++RG+G A VLVLYDEI
Sbjct: 249 YTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEI 292
Score = 77.4 bits (189), Expect = 1e-16
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 10/178 (5%)
Query: 181 FLSNMLSGGAAGLTSITFVYPLDFARTRLGADVGKSP--AEREFKGVTHCIKKIFATDGV 238
FL + L+GG A S T V P++ + L AE+++KG+ C+ +I G
Sbjct: 6 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 65
Query: 239 RGLYRGYVCSLWAIFIYRAIYFGIFDTSKAMRSHNSGIFTTWCIAQSVTTLAG------- 291
+RG + ++ F +A+ F D K + + + +G
Sbjct: 66 LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 125
Query: 292 -VVTYPLDTVRRRMMMQAGLPPQEVMYTGTGHCITKVIQLEGYRGFFKGLTSNLIRGI 348
YPLD R R+ G + +TG G+CITK+ + +G RG ++G ++ I
Sbjct: 126 LCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGII 183
Score = 39.7 bits (91), Expect = 3e-04
Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 1/132 (0%)
Query: 31 HTYQQLGVADFSPPHIAWVRLNYLYILTVPASKAQDRCFDSRPGRTLFTRFVLGTAGLAI 90
++ G+ V+ +Y + P + +
Sbjct: 161 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTA 220
Query: 91 IICTYYSGVKPLERNSLLKISHRTSLFSSPGIGDCFVRIHKEQGTLSFWRGNSANILRYF 150
+ + R +++ + + G DC+ +I K++G +F++G +N+LR
Sbjct: 221 VAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGM 280
Query: 151 PAQALNFALKDK 162
A L D+
Sbjct: 281 GG-AFVLVLYDE 291
>d1v7fa_ g.3.6.2 (A:) Phrixotoxin 1 (PaTX1) {Chilean copper
tarantula (Phrixotrichus auratus) [TaxId: 269635]}
Length = 29
Score = 25.8 bits (56), Expect = 1.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 227 HCIKKIFATDGVRGLYRGYVCSLW 250
+C K ++ D R G VC LW
Sbjct: 1 YCQKWMWTCDSARKCCEGLVCRLW 24
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 27.2 bits (60), Expect = 1.9
Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 4/106 (3%)
Query: 214 GKSPAEREFKGVTHCIKKIFATDGVRGLYRGYVCSLWAIFIYRAIYFGIFDTSKAMRSHN 273
+ + H I T +G Y S + T + N
Sbjct: 37 KEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGIPR-QPGQTRIDLAGDN 95
Query: 274 SGIF---TTWCIAQSVTTLAGVVTYPLDTVRRRMMMQAGLPPQEVM 316
+ I + + ++ + P+D + R + ++V+
Sbjct: 96 APIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVI 141
>d1ro7a_ c.130.1.1 (A:) Alpha-2,3/8-sialyltransferase CstII
{Campylobacter jejuni [TaxId: 197]}
Length = 258
Score = 27.6 bits (61), Expect = 2.0
Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 27/118 (22%)
Query: 90 IIICTYYSGVKPLERNSLLKISHRTSLFSSPGIGDCFVRIHKEQGTLSFWRGNSANILRY 149
+ Y +K L +N + L + T + ++ +
Sbjct: 53 SLFFEQYYTLKHLIQNQEYETE----LIMCSNYNQAHLENENFVKTFYDYFPDAHLGYDF 108
Query: 150 FP-----------------------AQALNFALKDKYKQIFFQGVDKNKEFGKYFLSN 184
F A+ YK+I+ G+D + Y
Sbjct: 109 FKQLKDFNAYFKFHEIYFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQNGSSYAFDT 166
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human
(Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 27.5 bits (60), Expect = 3.3
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 148 RYFPAQALNFALKDKYKQIFFQ-------GVDKNKEFGKYFLSNMLSGGA 190
RYF + + F + Q + ++KE G+ + G
Sbjct: 483 RYFVSFIIQFQFHEALCQAAGHTGPLHKCDIYQSKEAGQRLA-TAMKLGF 531
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit
{Thermotoga maritima [TaxId: 2336]}
Length = 123
Score = 26.1 bits (57), Expect = 4.4
Identities = 8/52 (15%), Positives = 16/52 (30%)
Query: 102 LERNSLLKISHRTSLFSSPGIGDCFVRIHKEQGTLSFWRGNSANILRYFPAQ 153
+ R L + R + +S G I + L + ++ Q
Sbjct: 14 VSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVDEVEVQ 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.140 0.428
Gapped
Lambda K H
0.267 0.0315 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,397,706
Number of extensions: 65006
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 14
Length of query: 370
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 283
Effective length of database: 1,213,086
Effective search space: 343303338
Effective search space used: 343303338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)