BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy438
(669 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 142/506 (28%), Positives = 224/506 (44%), Gaps = 119/506 (23%)
Query: 48 IPVDVLPERSNNESTIRDLLVS-TKEANMNMLRVWGGGSEVELWWPNGYGEQPLYNLQIT 106
IP +V S N +T+ ++ T + +N + + + W PNG+G LY+
Sbjct: 231 IPAEVRVNVSLNGTTVTEVKQQVTLQPGINHITLPAEVTNPVRWMPNGWGTPTLYDFSAQ 290
Query: 107 LASGVEM-STKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVD-I 164
+A G + + +S +IG RT+ ++ + + G FYFEVN +P+++KG+N IP D +
Sbjct: 291 IACGDRIVAEQSHRIGLRTIRVVNEKD-----KDGESFYFEVNGIPMFAKGANYIPQDAL 345
Query: 165 LPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYEPVDILPERSNNESTIRDLL 224
LP ++ ER ++ RD+
Sbjct: 346 LP-----------------------------------------NVTTERY--QTLFRDM- 361
Query: 225 VSTKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDY 284
KEANMNM+R+WGGG Y E N+
Sbjct: 362 ---KEANMNMVRIWGGGTY----------------------ENNL--------------- 381
Query: 285 FYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEME 344
FY+ DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +A+W GNNE+
Sbjct: 382 FYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEIL 441
Query: 345 GATIQKWYIREN--PELY---YKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKA 399
A ++ W + PE+Y Y +L+ L V ++D R Y+ SSP
Sbjct: 442 EA-LKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPY-------- 492
Query: 400 KYALADNPYSNIYGDTHNYD--YYQNLWDPSTAPKSRFCSEFGIQSLPQLSTFQKVATEA 457
A P S GD+HN+ Y + ++ RF SEFG QS P++ T A
Sbjct: 493 -LANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPE 551
Query: 458 DLASWRTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEYFAYLSQIYQAGAIKTITEQM 517
D + ++ Q + G ++ + + + I + E F Y+ + Q ++ E
Sbjct: 552 DYQI-ESEVMNAHQKSSIGNSLIRTYMERDYIIPE-SFEDFVYVGLVLQGQGMRHGLEAH 609
Query: 518 RRDKGVLREDGSGHNMGALYWQLNDT 543
RR++ + MG LYWQLND+
Sbjct: 610 RRNR--------PYCMGTLYWQLNDS 627
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 542 DTCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGA 601
D DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +A+W GNNE+ A
Sbjct: 384 DLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEILEA 443
Query: 602 TIQKWYIREN--PELY---YKEYAELYVNTLKPIVLQYDPTRPYLTSSP 645
++ W + PE+Y Y +L+ L V ++D R Y+ SSP
Sbjct: 444 -LKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSP 491
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 1 MSTKSIKIGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNE 60
++ +S +IG RT+ +V + + G FYFEVN +P+++KG+N IP D L E
Sbjct: 298 VAEQSHRIGLRTIRVVNEKD-----KDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTE 352
Query: 61 STIRDLLVSTKEANMNMLRVWGGGS 85
+ L KEANMNM+R+WGGG+
Sbjct: 353 R-YQTLFRDMKEANMNMVRIWGGGT 376
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 142/506 (28%), Positives = 224/506 (44%), Gaps = 119/506 (23%)
Query: 48 IPVDVLPERSNNESTIRDLLVS-TKEANMNMLRVWGGGSEVELWWPNGYGEQPLYNLQIT 106
IP +V S N +T+ ++ T + +N + + + W PNG+G LY+
Sbjct: 229 IPAEVRVNVSLNGTTVTEVKQQVTLQPGINHITLPAEVTNPVRWMPNGWGTPTLYDFSAQ 288
Query: 107 LASGVEM-STKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVD-I 164
+A G + + +S +IG RT+ ++ + + G FYFEVN +P+++KG+N IP D +
Sbjct: 289 IACGDRIVAEQSHRIGLRTIRVVNEKD-----KDGESFYFEVNGIPMFAKGANYIPQDAL 343
Query: 165 LPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYEPVDILPERSNNESTIRDLL 224
LP ++ ER ++ RD+
Sbjct: 344 LP-----------------------------------------NVTTERY--QTLFRDM- 359
Query: 225 VSTKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDY 284
KEANMNM+R+WGGG Y E N+
Sbjct: 360 ---KEANMNMVRIWGGGTY----------------------ENNL--------------- 379
Query: 285 FYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEME 344
FY+ DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +A+W GNNE+
Sbjct: 380 FYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEIL 439
Query: 345 GATIQKWYIREN--PELY---YKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKA 399
A ++ W + PE+Y Y +L+ L V ++D R Y+ SSP
Sbjct: 440 EA-LKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPY-------- 490
Query: 400 KYALADNPYSNIYGDTHNYD--YYQNLWDPSTAPKSRFCSEFGIQSLPQLSTFQKVATEA 457
A P S GD+HN+ Y + ++ RF SEFG QS P++ T A
Sbjct: 491 -LANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPE 549
Query: 458 DLASWRTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEYFAYLSQIYQAGAIKTITEQM 517
D + ++ Q + G ++ + + + I + E F Y+ + Q ++ E
Sbjct: 550 DYQI-ESEVMNAHQKSSIGNSLIRTYMERDYIIPE-SFEDFVYVGLVLQGQGMRHGLEAH 607
Query: 518 RRDKGVLREDGSGHNMGALYWQLNDT 543
RR++ + MG LYWQLND+
Sbjct: 608 RRNR--------PYCMGTLYWQLNDS 625
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 542 DTCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGA 601
D DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +A+W GNNE+ A
Sbjct: 382 DLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEILEA 441
Query: 602 TIQKWYIREN--PELY---YKEYAELYVNTLKPIVLQYDPTRPYLTSSP 645
++ W + PE+Y Y +L+ L V ++D R Y+ SSP
Sbjct: 442 -LKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSP 489
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 1 MSTKSIKIGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNE 60
++ +S +IG RT+ +V + + G FYFEVN +P+++KG+N IP D L E
Sbjct: 296 VAEQSHRIGLRTIRVVNEKD-----KDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTE 350
Query: 61 STIRDLLVSTKEANMNMLRVWGGGS 85
+ L KEANMNM+R+WGGG+
Sbjct: 351 R-YQTLFRDMKEANMNMVRIWGGGT 374
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 172 bits (435), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 141/506 (27%), Positives = 224/506 (44%), Gaps = 119/506 (23%)
Query: 48 IPVDVLPERSNNESTIRDLLVS-TKEANMNMLRVWGGGSEVELWWPNGYGEQPLYNLQIT 106
IP +V S N +T+ ++ T + +N + + + W PNG+G LY+
Sbjct: 229 IPAEVRVNVSLNGTTVTEVKQQVTLQPGINHITLPAEVTNPVRWMPNGWGTPTLYDFSAQ 288
Query: 107 LASGVEM-STKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVD-I 164
+A G + + +S +IG RT+ ++ + + G FYFEVN +P+++KG+N IP D +
Sbjct: 289 IACGDRIVAEQSHRIGLRTIRVVNEKD-----KDGESFYFEVNGIPMFAKGANYIPQDAL 343
Query: 165 LPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYEPVDILPERSNNESTIRDLL 224
LP ++ ER ++ RD+
Sbjct: 344 LP-----------------------------------------NVTTERY--QTLFRDM- 359
Query: 225 VSTKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDY 284
KEANMNM+R+WGGG Y E N+
Sbjct: 360 ---KEANMNMVRIWGGGTY----------------------ENNL--------------- 379
Query: 285 FYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEME 344
FY+ DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +A+W GNNE+
Sbjct: 380 FYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEIL 439
Query: 345 GATIQKWYIREN--PELY---YKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKA 399
A ++ W + PE+Y Y +L+ L V ++D R Y+ SSP
Sbjct: 440 EA-LKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPY-------- 490
Query: 400 KYALADNPYSNIYGDTHNYD--YYQNLWDPSTAPKSRFCSEFGIQSLPQLSTFQKVATEA 457
A P S GD+HN+ Y + ++ RF S+FG QS P++ T A
Sbjct: 491 -LANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSQFGFQSFPEMKTIAAFAAPE 549
Query: 458 DLASWRTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEYFAYLSQIYQAGAIKTITEQM 517
D + ++ Q + G ++ + + + I + E F Y+ + Q ++ E
Sbjct: 550 DYQI-ESEVMNAHQKSSIGNSLIRTYMERDYIIPE-SFEDFVYVGLVLQGQGMRHGLEAH 607
Query: 518 RRDKGVLREDGSGHNMGALYWQLNDT 543
RR++ + MG LYWQLND+
Sbjct: 608 RRNR--------PYCMGTLYWQLNDS 625
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 542 DTCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGA 601
D DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +A+W GNNE+ A
Sbjct: 382 DLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEILEA 441
Query: 602 TIQKWYIREN--PELY---YKEYAELYVNTLKPIVLQYDPTRPYLTSSP 645
++ W + PE+Y Y +L+ L V ++D R Y+ SSP
Sbjct: 442 -LKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSP 489
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 1 MSTKSIKIGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNE 60
++ +S +IG RT+ +V + + G FYFEVN +P+++KG+N IP D L E
Sbjct: 296 VAEQSHRIGLRTIRVVNEKD-----KDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTE 350
Query: 61 STIRDLLVSTKEANMNMLRVWGGGS 85
+ L KEANMNM+R+WGGG+
Sbjct: 351 R-YQTLFRDMKEANMNMVRIWGGGT 374
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 141/506 (27%), Positives = 223/506 (44%), Gaps = 119/506 (23%)
Query: 48 IPVDVLPERSNNESTIRDLLVS-TKEANMNMLRVWGGGSEVELWWPNGYGEQPLYNLQIT 106
IP +V S N +T+ ++ T + +N + + + W PNG+G LY+
Sbjct: 229 IPAEVRVNVSLNGTTVTEVKQQVTLQPGINHITLPAEVTNPVRWMPNGWGTPTLYDFSAQ 288
Query: 107 LASGVEM-STKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVD-I 164
+A G + + +S +IG RT+ ++ + + G FYFEVN +P+++KG+N IP D +
Sbjct: 289 IACGDRIVAEQSHRIGLRTIRVVNEKD-----KDGESFYFEVNGIPMFAKGANYIPQDAL 343
Query: 165 LPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYEPVDILPERSNNESTIRDLL 224
LP ++ ER ++ RD+
Sbjct: 344 LP-----------------------------------------NVTTERY--QTLFRDM- 359
Query: 225 VSTKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDY 284
KEANMNM+R+WGGG Y E N+
Sbjct: 360 ---KEANMNMVRIWGGGTY----------------------ENNL--------------- 379
Query: 285 FYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEME 344
FY+ DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +A+W GNNE+
Sbjct: 380 FYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEIL 439
Query: 345 GATIQKWYIREN--PELY---YKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKA 399
A ++ W + PE+Y Y +L+ L V ++D R Y+ SSP
Sbjct: 440 EA-LKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPY-------- 490
Query: 400 KYALADNPYSNIYGDTHNYD--YYQNLWDPSTAPKSRFCSEFGIQSLPQLSTFQKVATEA 457
A P S GD+HN+ Y + ++ RF SEFG QS P++ T A
Sbjct: 491 -LANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPE 549
Query: 458 DLASWRTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEYFAYLSQIYQAGAIKTITEQM 517
D + ++ Q + G ++ + + + I + E F Y+ + Q ++ E
Sbjct: 550 DYQI-ESEVMNAHQKSSIGNSLIRTYMERDYIIPE-SFEDFVYVGLVLQGQGMRHGLEAH 607
Query: 518 RRDKGVLREDGSGHNMGALYWQLNDT 543
RR++ + MG LY QLND+
Sbjct: 608 RRNR--------PYCMGTLYAQLNDS 625
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 542 DTCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGA 601
D DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +A+W GNNE+ A
Sbjct: 382 DLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEILEA 441
Query: 602 TIQKWYIREN--PELY---YKEYAELYVNTLKPIVLQYDPTRPYLTSSP 645
++ W + PE+Y Y +L+ L V ++D R Y+ SSP
Sbjct: 442 -LKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSP 489
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 1 MSTKSIKIGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNE 60
++ +S +IG RT+ +V + + G FYFEVN +P+++KG+N IP D L E
Sbjct: 296 VAEQSHRIGLRTIRVVNEKD-----KDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTE 350
Query: 61 STIRDLLVSTKEANMNMLRVWGGGS 85
+ L KEANMNM+R+WGGG+
Sbjct: 351 R-YQTLFRDMKEANMNMVRIWGGGT 374
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 28/161 (17%)
Query: 244 MTRYTDMARHESTIR-----DLLVSTKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQ 298
+ R+ D A + +R + + +E +N +R+ + Y Y+ D+ GI+ W
Sbjct: 288 VCRHQDRAEVGNALRPQHHEEDVALMREMGVNAIRL--AHYPQATYMYDLMDKHGIVTWA 345
Query: 299 DMMF------ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWY 352
++ F A + +F ++ + ++ + +R+ +HP I W NE++
Sbjct: 346 EIPFVGPGGYADKGFVDQASFRENGKQQLIELIRQHYNHPSICFWGLFNELK-------E 398
Query: 353 IRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNG 393
+ +NP Y KE L + Q DPTRP ++S +G
Sbjct: 399 VGDNPVEYVKE--------LNALAKQEDPTRPTTSASNQDG 431
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 515 EQMRRDKGVLREDGSGHNMGALYWQ---LNDTCDELGILIWQDMMF------ACNNYPAT 565
+ D ++RE G A Y Q + D D+ GI+ W ++ F A +
Sbjct: 304 QHHEEDVALMREMGVNAIRLAHYPQATYMYDLMDKHGIVTWAEIPFVGPGGYADKGFVDQ 363
Query: 566 PTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVN 625
+F ++ + ++ + +R+ +HP I W NE++ + +NP Y KE
Sbjct: 364 ASFRENGKQQLIELIRQHYNHPSICFWGLFNELK-------EVGDNPVEYVKE------- 409
Query: 626 TLKPIVLQYDPTRPYLTSSPTNG 648
L + Q DPTRP ++S +G
Sbjct: 410 -LNALAKQEDPTRPTTSASNQDG 431
>pdb|3FN9|A Chain A, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|B Chain B, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|C Chain C, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|D Chain D, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
Length = 692
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 282 SDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNN 341
SDY Y CD LG++IW ++ C N T ++ +S++ + +R+ +HP I VW +N
Sbjct: 343 SDYLYSRCDTLGLIIWAEI--PCVN-RVTGYETENAQSQLRELIRQSFNHPSIYVWGLHN 399
Query: 342 EM 343
E+
Sbjct: 400 EV 401
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 540 LNDTCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEM 598
L CD LG++IW ++ C N T ++ +S++ + +R+ +HP I VW +NE+
Sbjct: 346 LYSRCDTLGLIIWAEI--PCVN-RVTGYETENAQSQLRELIRQSFNHPSIYVWGLHNEV 401
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 281 MSDYFYETCDELGILIWQDMMFACNNYPATPT----FLQSVRSEISQTVRRVQHHPCIAV 336
S FY CD +GI++ + + N A F + + +++ ++R ++HP I +
Sbjct: 331 FSPAFYNLCDTMGIMVLNEGLDGWNQPKAADDYGNYFDEWWQKDMTDFIKRDRNHPSIIM 390
Query: 337 WAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLT--SSPTNGI 394
W+ NE+ GAT PE+ + L + Q DP RP + PT G+
Sbjct: 391 WSIGNEVTGAT---------PEIQH---------NLVSLFHQLDPDRPVTQGGTDPTRGM 432
Query: 395 ESEKAK 400
+++ K
Sbjct: 433 KTDYQK 438
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 24/118 (20%)
Query: 544 CDELGILIWQDMMFACNNYPATPT----FLQSVRSEISQTVRRVQHHPCIAVWAGNNEME 599
CD +GI++ + + N A F + + +++ ++R ++HP I +W+ NE+
Sbjct: 339 CDTMGIMVLNEGLDGWNQPKAADDYGNYFDEWWQKDMTDFIKRDRNHPSIIMWSIGNEVT 398
Query: 600 GATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLT--SSPTNGIESEKAK 655
GAT PE+ + L + Q DP RP + PT G++++ K
Sbjct: 399 GAT---------PEIQH---------NLVSLFHQLDPDRPVTQGGTDPTRGMKTDYQK 438
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 21/117 (17%)
Query: 40 IYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGSEVELWWPNGYGEQP 99
I KGSNL ++V + N+ +V+ L+V G V LWWP E+P
Sbjct: 228 ISVKGSNLFKLEVRLLDAENK------VVANGTGTQGQLKVPG----VSLWWPYLMHERP 277
Query: 100 --LYNLQITLASGVEMSTKS----IKIGFRTVELIQDHVDPNHLEKGRYFYFE-VNK 149
LY+L++ L + + S + +G RTV + + L G+ FYF VNK
Sbjct: 278 AYLYSLEVQLTAQTSLGPVSDFYTLPVGIRTVAVTKSQF----LINGKPFYFHGVNK 330
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 268 NMNMLRVWGGGVYMSDYF------YETCDELGILIWQDMMFACNNYP-ATPTFLQSVRSE 320
+ N+LR G + + ++ + CD GI++ + C A P F +V
Sbjct: 349 DFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDE----CPGVGLALPQFFNNVSLH 404
Query: 321 -----ISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPI 375
+ + VRR ++HP + +W+ NE + E A Y+ +
Sbjct: 405 HHMQVMEEVVRRDKNHPAVVMWSVANEPAS---------------HLESAGYYLKMVIAH 449
Query: 376 VLQYDPTRPYLTSSPTNGIESEKAKY--ALADNPYSNIYGD 414
DP+RP S +N + A Y + N Y + Y D
Sbjct: 450 TKSLDPSRPVTFVSNSNYAADKGAPYVDVICLNSYYSWYHD 490
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 27/134 (20%)
Query: 544 CDELGILIWQDMMFACNNYP-ATPTFLQSVRSE-----ISQTVRRVQHHPCIAVWAGNNE 597
CD GI++ + C A P F +V + + VRR ++HP + +W+ NE
Sbjct: 376 CDRYGIVVIDE----CPGVGLALPQFFNNVSLHHHMQVMEEVVRRDKNHPAVVMWSVANE 431
Query: 598 MEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKAKY- 656
+ E A Y+ + DP+RP S +N + A Y
Sbjct: 432 PAS---------------HLESAGYYLKMVIAHTKSLDPSRPVTFVSNSNYAADKGAPYV 476
Query: 657 -ALADNPYSNIYGD 669
+ N Y + Y D
Sbjct: 477 DVICLNSYYSWYHD 490
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|E Chain E, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|F Chain F, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|G Chain G, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|H Chain H, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|I Chain I, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|J Chain J, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|K Chain K, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|L Chain L, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|M Chain M, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|N Chain N, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|O Chain O, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|P Chain P, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1JZ1|I Chain I, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|J Chain J, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|K Chain K, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|L Chain L, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|M Chain M, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|N Chain N, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|O Chain O, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|P Chain P, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ0|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|E Chain E, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|F Chain F, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|G Chain G, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|H Chain H, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JYZ|I Chain I, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|J Chain J, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|K Chain K, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|L Chain L, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|M Chain M, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|N Chain N, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|O Chain O, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|P Chain P, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYY|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|E Chain E, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|F Chain F, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|G Chain G, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|H Chain H, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400
Length = 1023
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2P|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2Q|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
Length = 1052
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 399 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 450
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 451 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 495
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 431 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 490
Query: 597 EMEGA 601
GA
Sbjct: 491 SGHGA 495
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|B Chain B, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|C Chain C, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|D Chain D, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3D|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3E|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a)
Length = 1023
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0B|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0D|A Chain A, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|B Chain B, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|C Chain C, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|D Chain D, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
Length = 1052
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 399 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 450
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 451 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 495
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 431 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 490
Query: 597 EMEGA 601
GA
Sbjct: 491 SGHGA 495
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3T08|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T09|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
Length = 1052
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 399 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 450
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 451 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 495
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 431 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 490
Query: 597 EMEGA 601
GA
Sbjct: 491 SGHGA 495
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a)
Length = 1023
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
Length = 1023
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JYW|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
Length = 1023
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416q)
Length = 1023
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIQTHGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIQTHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MV0|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV1|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
Length = 1052
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 399 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 450
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 451 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 495
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 431 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 490
Query: 597 EMEGA 601
GA
Sbjct: 491 SGHGA 495
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ5|A Chain A, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|B Chain B, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|C Chain C, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|D Chain D, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n)
Length = 1023
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETNGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIETNGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3E1F|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
Length = 1023
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETEGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIETEGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 368 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 419
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 420 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 464
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 400 CDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 459
Query: 597 EMEGA 601
GA
Sbjct: 460 SGHGA 464
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIVTHGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ GN GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGA 466
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 544 CDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNN 596
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+ GN
Sbjct: 402 CDRYGLYVVDEANIVTHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
Query: 597 EMEGA 601
GA
Sbjct: 462 SGHGA 466
>pdb|2VZT|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZT|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZV|A Chain A, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
pdb|2VZV|B Chain B, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
Length = 1032
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 89 LWWPNGYGEQPLYNLQITLA-SGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEV 147
+WWP G G Q Y+L +T + G K G R V+ + GR + V
Sbjct: 300 VWWPAGMGGQHRYDLDLTASVGGTPSDAAKSKFGVRDVKATLNS------SGGR--QYSV 351
Query: 148 NKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYEPV 207
N P+ +G P L NE+ D L +N +R+ G D F++
Sbjct: 352 NGKPLLIRGGGYTPDLFLRW---NETAAADKLKYVLNLGLNTVRL--EGHIEPDEFFDIA 406
Query: 208 DIL 210
D L
Sbjct: 407 DDL 409
>pdb|2VZS|A Chain A, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZS|B Chain B, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2X05|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X05|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
Length = 1032
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 89 LWWPNGYGEQPLYNLQITLA-SGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEV 147
+WWP G G Q Y+L +T + G K G R V+ + GR + V
Sbjct: 300 VWWPAGMGGQHRYDLDLTASVGGTPSDAAKSKFGVRDVKATLNS------SGGR--QYSV 351
Query: 148 NKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYEPV 207
N P+ +G P L NE+ D L +N +R+ G D F++
Sbjct: 352 NGKPLLIRGGGYTPDLFLRW---NETAAADKLKYVLNLGLNTVRL--EGHIEPDEFFDIA 406
Query: 208 DIL 210
D L
Sbjct: 407 DDL 409
>pdb|2VZU|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
pdb|2VZU|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
Length = 1032
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 89 LWWPNGYGEQPLYNLQITLA-SGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEV 147
+WWP G G Q Y+L +T + G K G R V+ + GR + V
Sbjct: 300 VWWPAGMGGQHRYDLDLTASVGGTPSDAAKSKFGVRDVKATLNS------SGGR--QYSV 351
Query: 148 NKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYEPV 207
N P+ +G P L NE+ D L +N +R+ G D F++
Sbjct: 352 NGKPLLIRGGGYTPDLFLRW---NETAAADKLKYVLNLGLNTVRL--EGHIEPDEFFDIA 406
Query: 208 DIL 210
D L
Sbjct: 407 DDL 409
>pdb|2VZO|A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZO|B Chain B, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
Length = 1032
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 89 LWWPNGYGEQPLYNLQITLA-SGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEV 147
+WWP G G Q Y+L +T + G K G R V+ + GR + V
Sbjct: 300 VWWPAGMGGQHRYDLDLTASVGGTPSDAAKSKFGVRDVKATLNS------SGGR--QYSV 351
Query: 148 NKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYEPV 207
N P+ +G P L NE+ D L +N +R+ G D F++
Sbjct: 352 NGKPLLIRGGGYTPDLFLRW---NETAAADKLKYVLNLGLNTVRL--EGHIEPDEFFDIA 406
Query: 208 DIL 210
D L
Sbjct: 407 DDL 409
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 243 YMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGG------GVYMSDYFYETCDELGILI 296
Y D H I++++ T +A+ +L + GG G+ E L
Sbjct: 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLG 144
Query: 297 WQDMMFACNNYPATP---TFLQSVRSEISQTVRRVQHHPC------IAVWAGNNEMEGAT 347
+ ++ A N + + Q + E S +++V ++P I+ W G+N +E T
Sbjct: 145 VRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT 204
Query: 348 IQKWY 352
WY
Sbjct: 205 NAPWY 209
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
Length = 1052
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 399 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 450
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ G+ GA
Sbjct: 451 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGDESGHGA 495
>pdb|2DYI|A Chain A, Crystal Structure Of 16s Ribosomal Rna Processing Protein
Rimm From Thermus Thermophilus Hb8
pdb|3A1P|A Chain A, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
pdb|3A1P|C Chain C, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
Length = 162
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 103 LQITLASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIP- 161
L + LA + + +G R + D + P LE+GRY+YF + +P+Y +G +
Sbjct: 53 LVVHLAGVTDRTLAEALVGLRVYAEVAD-LPP--LEEGRYYYFALIGLPVYVEGRQVGEV 109
Query: 162 VDILPERSNNESTIR 176
VDIL + + IR
Sbjct: 110 VDILDAGAQDVLIIR 124
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 8 IGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIP-VDVLPERSNNESTIR 64
+G R V D + P LE+GRY+YF + +P+Y +G + VD+L + + IR
Sbjct: 70 VGLRVYAEVAD-LPP--LEEGRYYYFALIGLPVYVEGRQVGEVVDILDAGAQDVLIIR 124
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD7|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD9|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
Length = 1052
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 399 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 450
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ G+ GA
Sbjct: 451 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGSESGHGA 495
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
Protein From Bacteroides Thetaiotaomicron
Length = 1000
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 24/127 (18%)
Query: 284 YFYETCDELGILIWQDMMFACNNYPATPTFLQS----VRSEISQTVR---RVQHHPCIAV 336
Y+Y+ CD G+ + + + P L + + I +T R R ++HP + +
Sbjct: 395 YWYQLCDRYGLYVIDEANIESHGXGYGPASLAKDSTWLPAHIDRTRRXYERSKNHPSVVI 454
Query: 337 WA-GNNEMEGATIQKWY-----IRENPELYYKEYAELY-----------VNTLKPIVLQY 379
W+ GN G ++ Y + +N + Y+ E Y V+ ++ V++
Sbjct: 455 WSLGNEAGNGINFERTYDWLKSVEKNRPVQYERAEENYNTDIYCRXYRSVDVIRNYVVRK 514
Query: 380 DPTRPYL 386
D RP++
Sbjct: 515 DIYRPFI 521
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 421
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ G GA
Sbjct: 422 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGTESGHGA 466
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 20/105 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGILIWQDM------MF 302
++ ++D+L+ K+ N N +R S Y +Y CD G+ + + M
Sbjct: 399 QTMVQDILL-MKQNNFNAVRC-------SHYPNHPLWYTLCDRYGLYVVDEANIETHGMV 450
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWA-GNNEMEGA 346
N P +L ++ +++ V+R ++HP + +W+ G GA
Sbjct: 451 PMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGTESGHGA 495
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 460 ASWRTPFFDSRQHLAGG--TGILESSVGHQFEIGNLTLEYFAYLSQIYQAGAIKTITEQM 517
AS P +R+ + G + ++V H+ + L+L L++ Y A ++T+T Q
Sbjct: 381 ASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQY 440
Query: 518 RRDKGVLR 525
R + ++R
Sbjct: 441 RMHQAIMR 448
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 460 ASWRTPFFDSRQHLAGG--TGILESSVGHQFEIGNLTLEYFAYLSQIYQAGAIKTITEQM 517
AS P +R+ + G + ++V H+ + L+L L++ Y A ++T+T Q
Sbjct: 381 ASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQY 440
Query: 518 RRDKGVLR 525
R + ++R
Sbjct: 441 RMHQAIMR 448
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 28/129 (21%)
Query: 284 YFYETCDELGILIWQDMMFACNNYPATP-------TFLQSVRSEISQTVRRVQHHPCIAV 336
Y+Y+ CD G+ + + P T+L + + R ++HP I +
Sbjct: 399 YWYQLCDRYGLYXIDEANIESHGXGYGPASLAKDSTWLTAHXDRTHRXYERSKNHPAIVI 458
Query: 337 WA-GNNEMEGATIQKWY------------------IRENPELYYKEYAELYVNTLKPIVL 377
W+ GN G ++ Y + N ++Y + Y V+ +K V
Sbjct: 459 WSQGNEAGNGINFERTYDWLKSVEKGRPVQYERAELNYNTDIYCRXYRS--VDEIKAYVG 516
Query: 378 QYDPTRPYL 386
+ D RP++
Sbjct: 517 KKDIYRPFI 525
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 65 DLLVSTKEANMNMLRVWGGGSEV------ELWWPNGYGEQPLYNLQITLASGVEMSTKSI 118
D+ V ++A+ ++ G S LW P GE LY L +T S E +
Sbjct: 213 DVSVELRDADQQVVATGQGTSGTLQVVNPHLWQP---GEGYLYELCVTAKSQTECDIYPL 269
Query: 119 KIGFRTVELIQDHVDPNHLEKGRYFYF 145
++G R+V + + NH + FYF
Sbjct: 270 RVGIRSVAVKGEQFLINH----KPFYF 292
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 65 DLLVSTKEANMNMLRVWGGGSEV------ELWWPNGYGEQPLYNLQITLASGVEMSTKSI 118
D+ V ++A+ ++ G S LW P GE LY L +T S E +
Sbjct: 213 DVSVELRDADQQVVATGQGTSGTLQVVNPHLWQP---GEGYLYELCVTAKSQTECDIYPL 269
Query: 119 KIGFRTVELIQDHVDPNHLEKGRYFYF 145
++G R+V + + NH + FYF
Sbjct: 270 RVGIRSVAVKGEQFLINH----KPFYF 292
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 65 DLLVSTKEANMNMLRVWGGGSEV------ELWWPNGYGEQPLYNLQITLASGVEMSTKSI 118
D+ V ++A+ ++ G S LW P GE LY L +T S E +
Sbjct: 213 DVSVELRDADQQVVATGQGTSGTLQVVNPHLWQP---GEGYLYELCVTAKSQTECDIYPL 269
Query: 119 KIGFRTVELIQDHVDPNHLEKGRYFYF 145
++G R+V + + NH + FYF
Sbjct: 270 RVGIRSVAVKGEQFLINH----KPFYF 292
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|B Chain B, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|C Chain C, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|D Chain D, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|E Chain E, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|F Chain F, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
Length = 1024
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 539 QLNDTCDELGILIWQDMMFACNNYPA---------TPTFLQSVRSEISQTVRRVQHHPCI 589
+L D DE+G + + + + A P + ++ + +TV R ++HP I
Sbjct: 376 RLLDLADEMGFWVILECDLETHGFEAGGWVENPSDVPAWRDALVDRMERTVERDKNHPSI 435
Query: 590 AVWAGNNE 597
+W+ NE
Sbjct: 436 VMWSLGNE 443
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,586,136
Number of Sequences: 62578
Number of extensions: 944013
Number of successful extensions: 2380
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2266
Number of HSP's gapped (non-prelim): 100
length of query: 669
length of database: 14,973,337
effective HSP length: 105
effective length of query: 564
effective length of database: 8,402,647
effective search space: 4739092908
effective search space used: 4739092908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)