RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy438
(669 letters)
>gnl|CDD|225789 COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate
transport and metabolism].
Length = 808
Score = 117 bits (296), Expect = 2e-27
Identities = 94/478 (19%), Positives = 142/478 (29%), Gaps = 142/478 (29%)
Query: 86 EVELWWPNGYGEQP-LYNLQITLAS-GVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYF 143
+LW P E P LY L +TL + ++++IGFRTVE+
Sbjct: 249 NPKLWSP----EDPYLYRLVVTLKDANTLIDAEALRIGFRTVEIKDGL------------ 292
Query: 144 YFEVNKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYF 203
+N P++ +G N D + G
Sbjct: 293 -LLINGKPVFIRGVNRHEDDPIL---------------------------GRVTDEDAM- 323
Query: 204 YEPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVS 263
L KEANMN +R
Sbjct: 324 -----------------ERDLKLMKEANMNSVRTS------------------------- 341
Query: 264 TKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQ 323
S+ FY+ CDELG+L+ + M + P P + + V E+ +
Sbjct: 342 --------------HYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVSEEVRR 387
Query: 324 TVRRVQHHPCIAVWAGNNE-MEGATIQKWY-----IRENPELYYKEYAELYVNTLKPIVL 377
V R ++HP I +W+ NE G+ Y + Y+ + L P +
Sbjct: 388 MVERDRNHPSIIIWSLGNESGHGSNHWALYRWFKASDPTRPVQYEGRGTEATDILSP-MY 446
Query: 378 QYDPTRPYLTSSPTNGIESEKAKYAL----ADNPYSNIYGDTHNYDYYQN--LWDPSTAP 431
+ Y SP I E A D Y ++G+ Y Q +WD
Sbjct: 447 ERVDEILYFPGSPRPLILCEYAHAMGNSYGGDYHYWGVFGE---YPRLQGGFIWD---WV 500
Query: 432 KSRFCS--EFGIQSLPQLSTFQKVATEADLASWRTPFFDSRQHLAGGTGILESSVGHQFE 489
R E G Q+ F + F RQ G +
Sbjct: 501 DQRLIPIDETGNQAYAYGGDFGDYPNDRSF-ELNGLVFPDRQPNPGLK-----EAKVGTQ 554
Query: 490 IGNL----TLEYFAYLSQIYQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDT 543
T + F S+ A A + ++R G +G+L WQLND
Sbjct: 555 FWAFGDPKTFQGFLVTSENLFAEADRERLPKLRALLGET--------LGSLEWQLNDV 604
Score = 79.4 bits (196), Expect = 3e-15
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 7/114 (6%)
Query: 542 DTCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNE-MEG 600
D CDELG+L+ + M + P P + + V E+ + V R ++HP I +W+ NE G
Sbjct: 351 DLCDELGLLVIDEAMIETHGMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGHG 410
Query: 601 ATIQKWY-----IRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGI 649
+ Y + Y+ + L P + + Y SP I
Sbjct: 411 SNHWALYRWFKASDPTRPVQYEGRGTEATDILSP-MYERVDEILYFPGSPRPLI 463
Score = 55.9 bits (135), Expect = 6e-08
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 7 KIGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDL 66
+IGFRTVE+ +N P++ +G N D + R +E +
Sbjct: 280 RIGFRTVEIKDGL-------------LLINGKPVFIRGVNRHEDDPILGRVTDEDAMERD 326
Query: 67 LVSTKEANMNMLRVWG 82
L KEANMN +R
Sbjct: 327 LKLMKEANMNSVRTSH 342
>gnl|CDD|217247 pfam02836, Glyco_hydro_2_C, Glycosyl hydrolases family 2, TIM
barrel domain. This family contains beta-galactosidase,
beta-mannosidase and beta-glucuronidase activities.
Length = 297
Score = 39.7 bits (93), Expect = 0.003
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 32/111 (28%)
Query: 285 FYETCDELGILI-----------WQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPC 333
+Y+ CDE G+ + WQ N P +L++ + V+R ++HP
Sbjct: 64 WYQLCDEYGLYVIDETNLETHGLWQ-KFGEINVLADNPEWLKAHLQRAREMVQRDKNHPS 122
Query: 334 IAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRP 384
I +W+ NE EN + YK EL DPTRP
Sbjct: 123 IIIWSLGNES--------GAGENIKAMYKATKEL------------DPTRP 153
Score = 35.4 bits (82), Expect = 0.075
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 32/109 (29%)
Query: 542 DTCDELGILI-----------WQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIA 590
CDE G+ + WQ N P +L++ + V+R ++HP I
Sbjct: 66 QLCDEYGLYVIDETNLETHGLWQ-KFGEINVLADNPEWLKAHLQRAREMVQRDKNHPSII 124
Query: 591 VWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRP 639
+W+ NE EN + YK EL DPTRP
Sbjct: 125 IWSLGNES--------GAGENIKAMYKATKEL------------DPTRP 153
>gnl|CDD|216070 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2. This
family contains beta-galactosidase, beta-mannosidase and
beta-glucuronidase activities.
Length = 109
Score = 36.3 bits (84), Expect = 0.008
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 86 EVELWWPNGYGEQPLYNLQITL-ASGVEMSTKSIKIGFR 123
+LW P LY L + L A G + S + GFR
Sbjct: 74 NPKLWSP---ETPNLYTLTVELDADGKVIDEVSTRFGFR 109
>gnl|CDD|236673 PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha;
Reviewed.
Length = 1021
Score = 34.7 bits (80), Expect = 0.18
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 246 RYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSD-YFYETCDELGILIWQDMMFAC 304
R M R E I K+ N+N +R Y +D FYE CD G+ + +
Sbjct: 350 RAVGMDRVEKDI----QLMKQHNINSVRT---AHYPNDPRFYELCDIYGLFVMAETDVES 402
Query: 305 NNYPAT---------PTFLQSVRSEISQTVRRVQHHPCIAVWAGNNE 342
+ + P + + I + + ++HP I +W+ NE
Sbjct: 403 HGFANVGDISRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNE 449
>gnl|CDD|236548 PRK09525, lacZ, beta-D-galactosidase; Reviewed.
Length = 1027
Score = 33.0 bits (76), Expect = 0.64
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 19/100 (19%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-----FYETCDELGIL------IWQDMMF 302
E+ ++D+L+ K+ N N +R S Y +YE CD G+ I M
Sbjct: 371 ETMVQDILL-MKQHNFNAVRC-------SHYPNHPLWYELCDRYGLYVVDEANIETHGMV 422
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNE 342
N P +L ++ +++ V+R ++HP I +W+ NE
Sbjct: 423 PMNRLSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNE 462
>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This
model represents the AAA family ATPase, EccA, of the
actinobacterial flavor of type VII secretion systems.
Species such as Mycobacterium tuberculosis have several
instances of this system per genome, designated EccA1,
EccA2, etc [Protein fate, Protein and peptide secretion
and trafficking].
Length = 557
Score = 31.4 bits (71), Expect = 1.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 392 NGIESEKAKYALADNPYSNIYGDTHNYDYYQNLWDPSTAP 431
N E+ + + AL D Y + + + WDPS+AP
Sbjct: 211 NHPENTQVEEALDDPSYRLVTTTAETIEARTDPWDPSSAP 250
>gnl|CDD|133038 cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in
exopolysaccharide amylovora biosynthesis. AmsE is a
glycosyltransferase involved in exopolysaccharide
amylovora biosynthesis in Erwinia amylovora. Amylovara
is one of the three exopolysaccharide produced by E.
amylovora. Amylovara-deficient mutants are
non-pathogenic. It is a subfamily of Glycosyltransferase
Family GT2, which includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 201
Score = 30.0 bits (68), Expect = 2.6
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 352 YIRENPELYYKEYAELYVNTLKP--IVLQYD 380
YI+E PE + + TL P +VL D
Sbjct: 7 YIKEKPEFLREALESILKQTLPPDEVVLVKD 37
Score = 30.0 bits (68), Expect = 2.6
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 607 YIRENPELYYKEYAELYVNTLKP--IVLQYD 635
YI+E PE + + TL P +VL D
Sbjct: 7 YIKEKPEFLREALESILKQTLPPDEVVLVKD 37
>gnl|CDD|184352 PRK13829, rimM, 16S rRNA-processing protein RimM; Provisional.
Length = 162
Score = 29.7 bits (67), Expect = 3.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 25 LEKGRYFYFEVNKVPIYSKGSNLIPV-DVLPERSNNESTIRDLLV 68
LE+G Y+Y E+ +P+Y G L V DV ++ +DLLV
Sbjct: 84 LEEGSYYYHELRGLPVYVDGEPLGEVVDVE------DAGAQDLLV 122
Score = 28.9 bits (65), Expect = 5.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 137 LEKGRYFYFEVNKVPIYSKGSNLIPV-DILPERSNNESTIRDLLV 180
LE+G Y+Y E+ +P+Y G L V D+ ++ +DLLV
Sbjct: 84 LEEGSYYYHELRGLPVYVDGEPLGEVVDVE------DAGAQDLLV 122
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 29.8 bits (68), Expect = 5.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 275 WGGGVYMSDYFYETCDELGILIWQD 299
WGGG + + Y + + LG+ I D
Sbjct: 127 WGGGKALVNALYRSAERLGVEIRYD 151
>gnl|CDD|236851 PRK11114, PRK11114, cellulose synthase regulator protein;
Provisional.
Length = 756
Score = 29.9 bits (68), Expect = 5.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 449 TFQKVATEADLASWRTPFFDSRQ 471
T+QK+ DLA PFFD R
Sbjct: 190 TYQKLPLPNDLALLPAPFFDPRD 212
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,005,850
Number of extensions: 3273195
Number of successful extensions: 2578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2571
Number of HSP's successfully gapped: 23
Length of query: 669
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 566
Effective length of database: 6,369,140
Effective search space: 3604933240
Effective search space used: 3604933240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.7 bits)