RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy438
(669 letters)
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A
{Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1
b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A*
2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A*
Length = 848
Score = 272 bits (695), Expect = 1e-80
Identities = 130/526 (24%), Positives = 209/526 (39%), Gaps = 117/526 (22%)
Query: 86 EVELWWPNGYGEQPLYNLQITLASGV-EMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFY 144
W PNG+G LY+ +A G ++ +S +IG RT+ ++ + + G FY
Sbjct: 270 NPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQSHRIGLRTIRVVNEK-----DKDGESFY 324
Query: 145 FEVNKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFY 204
FEVN +P+++KG+N IP D L E
Sbjct: 325 FEVNGIPMFAKGANYIPQDALLPNVTTE-------------------------------- 352
Query: 205 EPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVST 264
+ L KEANMNM+R
Sbjct: 353 --------------RYQTLFRDMKEANMNMVR---------------------------- 370
Query: 265 KEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQT 324
+WGGG Y ++ FY+ DE GIL+WQD MFAC YP+ PTFL+ V +E
Sbjct: 371 ---------IWGGGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYN 421
Query: 325 VRRVQHHPCIAVWAGNNEMEGATIQKWY----IRENPELYYKEYAELYVNTLKPIVLQYD 380
+RR+++H +A+W GNNE+ A + E + Y +L+ L V ++D
Sbjct: 422 IRRLRNHASLAMWCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFD 481
Query: 381 PTRPYLTSSPTNGIESEKAKYALADNPYSNIYGDTHNYD--YYQNLWDPSTAPKSRFCSE 438
R Y+ SSP P S GD+HN+ Y + ++ RF SE
Sbjct: 482 SDRFYVHSSPYLANW---------GRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSE 532
Query: 439 FGIQSLPQLSTFQKVATEADLASWRTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEYF 498
FG QS P++ T A D + ++ Q + G ++ + + + I + E F
Sbjct: 533 FGFQSFPEMKTIAAFAAPEDY-QIESEVMNAHQKSSIGNSLIRTYMERDYIIPE-SFEDF 590
Query: 499 AYLSQIYQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDTCDELGILIWQDMMFA 558
Y+ + Q ++ E RR++ + MG LYWQLND+ + W + +
Sbjct: 591 VYVGLVLQGQGMRHGLEAHRRNR--------PYCMGTLYWQLNDSWPVVS---WSSIDYY 639
Query: 559 CNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQ 604
N ++ + +++ + + ME T++
Sbjct: 640 GNWKALHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLE 685
Score = 126 bits (316), Expect = 3e-30
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 542 DTCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGA 601
D DE GIL+WQD MFAC YP+ PTFL+ V +E +RR+++H +A+W GNNE+ A
Sbjct: 384 DLADENGILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEILEA 443
Query: 602 TIQKWY----IRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKAKYA 657
+ E + Y +L+ L V ++D R Y+ SSP +
Sbjct: 444 LKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYLANWGRPESWG 503
Query: 658 LADNPYSNIY 667
D+ ++
Sbjct: 504 TGDSHNWGVW 513
Score = 72.9 bits (178), Expect = 2e-13
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 1 MSTKSIKIGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNE 60
++ +S +IG RT+ +V + + G FYFEVN +P+++KG+N IP D L E
Sbjct: 298 VAEQSHRIGLRTIRVVNEK-----DKDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTE 352
Query: 61 STIRDLLVSTKEANMNMLRVWGGGS 85
+ L KEANMNM+R+WGGG+
Sbjct: 353 -RYQTLFRDMKEANMNMVRIWGGGT 376
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine,
glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis
orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5
c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A*
2vzu_A*
Length = 1032
Score = 261 bits (667), Expect = 1e-75
Identities = 72/501 (14%), Positives = 136/501 (27%), Gaps = 147/501 (29%)
Query: 60 ESTIRDLLVSTKEANMNMLRVWGGGSEVELWWPNGYGEQPLYNLQITLAS-GVEMSTKSI 118
T+ K ++ + +WWP G G Q Y+L +T + G
Sbjct: 275 SQTVSLAAKERKTVTFPLVGL----DRPNVWWPAGMGGQHRYDLDLTASVGGTPSDAAKS 330
Query: 119 KIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDILPERSNNESTIRDL 178
K G R V+ + VN P+ +G P DL
Sbjct: 331 KFGVRDVKATL--------NSSGGRQYSVNGKPLLIRGGGYTP---------------DL 367
Query: 179 LVSTKEANMNMLRVWGGGVYMSDYFYEPVDILPERSNNESTIRDLLVSTKEANMNMLRVW 238
LR NE+ D L +N +R+
Sbjct: 368 ----------FLRW-----------------------NETAAADKLKYVLNLGLNTVRLE 394
Query: 239 GGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYETCDELGILI-- 296
G D F++ D+LG+L
Sbjct: 395 GH---------------------------------------IEPDEFFDIADDLGVLTMP 415
Query: 297 -------WQDMMFAC-NNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEM-EGAT 347
W+ + P + ++ + R++ HP + + ++
Sbjct: 416 GWECCDKWEGQVNGEEKGEPWVESDYPIAKASMFSEAERLRDHPSVISFHIGSDFAPDRR 475
Query: 348 IQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKAKYALADNP 407
I++ Y+ + D P + ++ A + P
Sbjct: 476 IEQGYLD--------------------AMKAADFLLPVIPAASARPSPITGASGMKMNGP 515
Query: 408 YSNIYGDTHNYDYYQNLWDPSTAPKSRFCSEFGIQ-SLPQLSTFQKVATEADLASWRTPF 466
Y + + YD Q F SE +P + T +++ + ++L
Sbjct: 516 Y-DYVPPVYWYDKSQKDRG----GAWSFNSETSAGVDIPTMDTLKRMMSASEL-DTMWKN 569
Query: 467 FDSRQHLAGGTGILESSVGHQFEIGNL-----TLEYFAYLSQIYQAGAIKTITEQMRRDK 521
++Q+ + + + L F +Q+ Q ++ E R+
Sbjct: 570 PSAKQYHRSSSDTFGNLKLFGDALTKRYGASANLNDFVRKAQLSQYENVRAEFESHSRNY 629
Query: 522 GVLREDGSGHNMGALYWQLND 542
D + + G +YW LN
Sbjct: 630 T----DSTNPSTGLIYWMLNS 646
Score = 94.4 bits (234), Expect = 5e-20
Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 31/137 (22%)
Query: 542 DTCDELGILI---------WQDMMFAC-NNYPATPTFLQSVRSEISQTVRRVQHHPCIAV 591
D D+LG+L W+ + P + ++ + R++ HP +
Sbjct: 404 DIADDLGVLTMPGWECCDKWEGQVNGEEKGEPWVESDYPIAKASMFSEAERLRDHPSVIS 463
Query: 592 WAGNNEM-EGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIE 650
+ ++ I++ Y+ + D P + ++
Sbjct: 464 FHIGSDFAPDRRIEQGYLD--------------------AMKAADFLLPVIPAASARPSP 503
Query: 651 SEKAKYALADNPYSNIY 667
A + PY +
Sbjct: 504 ITGASGMKMNGPYDYVP 520
Score = 79.7 bits (196), Expect = 1e-15
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 3 TKSIKIGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNEST 62
K G R V+ + VN P+ +G P D+ NE+
Sbjct: 327 AAKSKFGVRDVKATL--------NSSGGRQYSVNGKPLLIRGGGYTP-DLFLRW--NETA 375
Query: 63 IRDLLVSTKEANMNMLRVWGG 83
D L +N +R+ G
Sbjct: 376 AADKLKYVLNLGLNTVRLEGH 396
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas
hydrolase, PSI-2, protein structure initiative; 2.70A
{Bacteroides fragilis}
Length = 692
Score = 69.8 bits (171), Expect = 1e-12
Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 25/180 (13%)
Query: 265 KEANMNMLRVWGGGVYM-SDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQ 323
+ +R Y SDY Y CD LG++IW + N T ++ +S++ +
Sbjct: 328 MDVGATTVRF---AHYQQSDYLYSRCDTLGLIIW-AEIPCVNRV--TGYETENAQSQLRE 381
Query: 324 TVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTR 383
+R+ +HP I VW +NE+ EY +L + DP R
Sbjct: 382 LIRQSFNHPSIYVWGLHNEVYQPH---------------EYTAALTRSLHDLAKTEDPDR 426
Query: 384 PYLTSSPTNGIESEKAKYA--LADNPYSNIY-GDTHNYDYYQNLWDPSTAPKSRFCSEFG 440
++ + ++ A N Y Y + + + + +E+G
Sbjct: 427 YTVSVNGYGHMDHPVNLNADIQGMNRYFGWYEKKIQDIKPWVEQLEKDYPYQKLMLTEYG 486
Score = 63.2 bits (154), Expect = 2e-10
Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 27/162 (16%)
Query: 515 EQMRRDKGVLREDG-----SGHNMGALYWQLNDTCDELGILIWQDMMFACNNYPATPTFL 569
E D + + G H + Y CD LG++IW ++ N T
Sbjct: 318 EHHDFDLAAIMDVGATTVRFAHYQQSDYLY--SRCDTLGLIIWAEI-PCVNRV--TGYET 372
Query: 570 QSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKP 629
++ +S++ + +R+ +HP I VW +NE+ EY +L
Sbjct: 373 ENAQSQLRELIRQSFNHPSIYVWGLHNEVYQPH---------------EYTAALTRSLHD 417
Query: 630 IVLQYDPTRPYLTSSPTNGIESEKAKYA--LADNPYSNIYGD 669
+ DP R ++ + ++ A N Y Y
Sbjct: 418 LAKTEDPDRYTVSVNGYGHMDHPVNLNADIQGMNRYFGWYEK 459
Score = 35.5 bits (82), Expect = 0.055
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 17/75 (22%)
Query: 87 VELWWPNGYGEQP-LYNLQITL-ASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFY 144
LW + P LY + L A G + +G R E + KG
Sbjct: 245 PHLWQG---RKDPYLYKVVCRLMADGKVIDEVVQPLGVRKYE-----IVAG---KG---- 289
Query: 145 FEVNKVPIYSKGSNL 159
F +N G
Sbjct: 290 FFLNGEKYSMYGVTR 304
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro
structure initiative, NEW YORK SGX research center for
STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}
Length = 667
Score = 67.4 bits (165), Expect = 7e-12
Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 35/188 (18%)
Query: 265 KEANMNMLRVWGGGVYM-SDYFYETCDELGILIW------QDMMFACNNYPATPTFLQSV 317
+E +N +R+ Y + Y Y+ D+ GI+ W +A + +F ++
Sbjct: 314 REMGVNAIRL---AHYPQATYMYDLMDKHGIVTWAEIPFVGPGGYADKGFVDQASFRENG 370
Query: 318 RSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVL 377
+ ++ + +R+ +HP I W NE++ + YV L +
Sbjct: 371 KQQLIELIRQHYNHPSICFWGLFNELK---------------EVGDNPVEYVKELNALAK 415
Query: 378 QYDPTRPYLTSSPTNGIESEKAKYALADNPYSNIY-----GDTHNYDYYQNLWDPSTAPK 432
Q DPTRP T+ + + +N N Y + +
Sbjct: 416 QEDPTRPT-----TSASNQDGNLNFITENIAWNRYDGWYGSTPKTLATFLDRTHKKHPEL 470
Query: 433 SRFCSEFG 440
SE+G
Sbjct: 471 RIGISEYG 478
Score = 62.8 bits (153), Expect = 2e-10
Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 33/164 (20%)
Query: 515 EQMRRDKGVLREDG-----SGHNMGALYWQLNDTCDELGILIW------QDMMFACNNYP 563
+ D ++RE G H A Y D D+ GI+ W +A +
Sbjct: 304 QHHEEDVALMREMGVNAIRLAHYPQATYMY--DLMDKHGIVTWAEIPFVGPGGYADKGFV 361
Query: 564 ATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELY 623
+F ++ + ++ + +R+ +HP I W NE++ + Y
Sbjct: 362 DQASFRENGKQQLIELIRQHYNHPSICFWGLFNELK---------------EVGDNPVEY 406
Query: 624 VNTLKPIVLQYDPTRPYLTSSPTNGIESEKAKYALADNPYSNIY 667
V L + Q DPTRP T+ + + +N N Y
Sbjct: 407 VKELNALAKQEDPTRPT-----TSASNQDGNLNFITENIAWNRY 445
Score = 38.9 bits (91), Expect = 0.005
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 23/112 (20%)
Query: 85 SEVELWWPNGYGEQP-LYNLQITL-ASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRY 142
+ LW E P +Y + I+L G ++ + + +G R DP+ KG
Sbjct: 229 QKPRLWNG---CEDPFMYQVSISLHKDGKQIDSVTQPLGLRYYH-----TDPD---KG-- 275
Query: 143 FYFEVNKVPIYSKGSNLIPVDILPER---SNNESTIRDLLVSTKEANMNMLR 191
F +N + G E + D+ + +E +N +R
Sbjct: 276 --FFLNGKHLPLHGVCR--HQDRAEVGNALRPQHHEEDVAL-MREMGVNAIR 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.6 bits (164), Expect = 1e-11
Identities = 57/443 (12%), Positives = 128/443 (28%), Gaps = 147/443 (33%)
Query: 15 LVQDHV-DPNHLEKGRYFYFEVN-KVPIYSKGSNLIPVDVLPERSNNESTIRDLLVS-TK 71
LV +V + F ++ K+ + ++ + D L + ++ ++ T
Sbjct: 248 LVLLNVQNAKAWN-----AFNLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTP 300
Query: 72 EANMNMLRVWGGGSEVELWWPNGYGEQ-----PLYNLQITLASGVEMSTKSIKIGFRTVE 126
+ ++L + +L P + P ++++ I E
Sbjct: 301 DEVKSLLLKYLDCRPQDL--P----REVLTTNPR---RLSI------------IA----E 335
Query: 127 LIQDHVDPNHLEKGRYFYFEVNKVPIYSKGS--NLIPVD---------ILPERSNNESTI 175
I+D + + + +K+ + S L P + + P
Sbjct: 336 SIRDG--LATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-------- 383
Query: 176 RDLLVSTKEANMNMLRVWGGGVYMSDYFYEPVDI--------LPERSNNESTIR--DLLV 225
+ T + +W + + + + L E+ ESTI + +
Sbjct: 384 -SAHIPTI----LLSLIWFDVIK-----SDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 226 STKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDYF 285
K N + H S + + + +++ + + YF
Sbjct: 434 ELKVKLENEYAL---------------HRSIVDHYNIPKTFDSDDLIPPY-----LDQYF 473
Query: 286 Y----------ETCDELGIL--IWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPC 333
Y E + + + ++ D F + Q +R
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRF------------------LEQKIRHDST-AW 514
Query: 334 IAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNG 393
A + N ++ K YI +N Y E VN + + + + L S
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKY-----ERLVNAILDFLPKIEEN---LICSKYTD 566
Query: 394 IESEKAKYALADNPYSNIYGDTH 416
+ + AL I+ + H
Sbjct: 567 L----LRIALM-AEDEAIFEEAH 584
Score = 28.7 bits (63), Expect = 7.9
Identities = 60/500 (12%), Positives = 131/500 (26%), Gaps = 160/500 (32%)
Query: 248 TDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDY-FYETCDELGILI----WQDMMF 302
+ H+ +D+L ++A ++ ++ + D ++ ++
Sbjct: 9 FETGEHQYQYKDILSVFEDA------------FVDNFDCKDVQDMPKSILSKEEIDHIIM 56
Query: 303 ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWY------IRE- 355
+ + T ++ S+ + V++ +E ++ Y I+
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKF--------------VEEV-LRINYKFLMSPIKTE 101
Query: 356 --NPELYYKEYAELYVNTLK---PIVLQYDPTRPYLTSSPTNGIESEKAKYALADNPYSN 410
P + + Y E + L + +Y+ +R P + +A L
Sbjct: 102 QRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRL----QPYLKLR--QALLELRPAKNVL 154
Query: 411 IYGDT------------HNYDYYQNL-----W---------DPSTAPKSRFCSEFG--IQ 442
I G +Y + W + + +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 443 SLPQLSTFQKVATEADLASWRTPFFDSRQH----LAGGTGILESSVGHQFEIGNL-TLEY 497
S S+ K+ + + S+ + L +L + N
Sbjct: 215 SRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLL-----VLL-------NVQNAKAWNA 261
Query: 498 FAYLSQIYQAGAIKTITEQMRRDKGVLREDGSGH----NMGALYWQLNDTCDE-LGILI- 551
F +I + T R K V + ++ L T DE +L+
Sbjct: 262 FNLSCKIL----LTT------RFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLK 309
Query: 552 WQDMMF------ACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAG----NNEMEGA 601
+ D P +S ++ W N +
Sbjct: 310 YLDCRPQDLPREVLTTNP----RR------LSIIAESIRDGLAT--WDNWKHVNCDKLTT 357
Query: 602 TIQKWYIRENPELYYKEYAELYV---NTLKPI-VLQ--------YDPTRPYLTSSPTNGI 649
I+ P Y K + L V + P +L D +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV----------V 407
Query: 650 ESEKAKYALAD-NPYSNIYG 668
++ KY+L + P +
Sbjct: 408 VNKLHKYSLVEKQPKESTIS 427
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 2e-09
Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 46/195 (23%)
Query: 356 NPELYYKEYAELYVNTLKPIVLQY-DPTRPYLTSSPTNGIESEKAKYALADNPYSNIYGD 414
N + Y++E +LY T +V + L+ +++EK ++
Sbjct: 165 NTDDYFEELRDLY-QTYHVLVGDLIKFSAETLSELIRTTLDAEK------------VF-- 209
Query: 415 THNYDYYQNLWDPSTAPKSRFCSEFGIQSLP-----QLSTFQKVATEADLASWRTPFFDS 469
T + + L +PS P + I S P QL+ + A TP +
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGF----TP-GEL 263
Query: 470 RQHLAGGTG----------ILESSVGHQF-EIGNLTLEYFAYL---SQIYQAGAIKTITE 515
R +L G TG I E+ F + ++ +A ++
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY--EAYPNTSLPP 321
Query: 516 QMRRDKGVLREDGSG 530
+ D E+ G
Sbjct: 322 SILEDS---LENNEG 333
Score = 44.7 bits (105), Expect = 1e-04
Identities = 45/324 (13%), Positives = 85/324 (26%), Gaps = 142/324 (43%)
Query: 371 TLKPIVLQYDPTRPYLTSSPTNGIESEKAKYALADNPYSNIYGDTHNYDYYQNLWDPSTA 430
+ +P+ L + L PT ++ L +
Sbjct: 5 STRPLTLSHGSLEHVL-LVPTA------------------------SFFIASQLQE---- 35
Query: 431 PKSRFCSEFGIQSLPQLSTFQKVATEADLASWRTPFFDSRQHLAG------GTGILESSV 484
+F + LP+ TE A+ P + L G + + S V
Sbjct: 36 -------QF-NKILPE-------PTEG-FAADDEP--TTPAELVGKFLGYVSSLVEPSKV 77
Query: 485 GHQFEIGNLTLEYF--AYLSQ--IYQAGA--IKTITEQMRRDKGVLREDGSGHNMGALYW 538
G ++ NL L F YL I+ A ++ + + K +++ Y
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN----------YI 127
Query: 539 QLNDTCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEM 598
+ + ++V + +A++ G
Sbjct: 128 TARIMAKRP------------FDKKSNSALFRAVGEG---------NAQLVAIFGG---- 162
Query: 599 EGATIQKWYIRENPELYYKEYAELYVNTLKPIV----------LQ--------------- 633
+G N + Y++E +LY T +V L
Sbjct: 163 QG----------NTDDYFEELRDLY-QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 634 -YD-----------PTRPYLTSSP 645
+ P + YL S P
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIP 235
Score = 35.8 bits (82), Expect = 0.058
Identities = 82/572 (14%), Positives = 167/572 (29%), Gaps = 223/572 (38%)
Query: 108 ASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYF--------YFEVNKVPIYSKGSNL 159
+ E+ K + G+ + V+P+ + G++ FE Y +G+++
Sbjct: 55 TTPAELVGKFL--GY-----VSSLVEPS--KVGQFDQVLNLCLTEFENC----YLEGNDI 101
Query: 160 --IPVDILPERSNNESTIRDLLVSTKEANMNMLR-----------------------VWG 194
+ +L E ++L+ + A + R ++G
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 195 G-GVYMSDYF---------YEP-VDILPERSNNESTIRDLLVSTKEAN------MNMLRV 237
G G DYF Y V L + S T+ +L+ +T +A +N+L
Sbjct: 162 GQGN-TDDYFEELRDLYQTYHVLVGDLIKFS--AETLSELIRTTLDAEKVFTQGLNILE- 217
Query: 238 WGGGV-------YMTRY---------TDMARHESTIRDLLVSTKEANMNM--LRVWGGGV 279
W Y+ +A + T + L + E + G+
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 280 YMS---------DYFYETCDE-LGILIWQDMMFACNNYPATPTFLQSVRSEISQ-TVRRV 328
+ + F+ + + + +L + + C A P S+ I + ++
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFF--IGVRCYE--AYPN--TSLPPSILEDSLENN 331
Query: 329 QHHPC--IAVWAGNNEMEGATIQKWYIRE-NPELYYKEYAELY-VNTLKPIVLQYDPTRP 384
+ P +++ + + +Q Y+ + N L + E+ VN K +V
Sbjct: 332 EGVPSPMLSI-SN---LTQEQVQD-YVNKTNSHLPAGKQVEISLVNGAKNLV-------- 378
Query: 385 YLTSSPTNGIESEKAKYALADNPYSNIYGDTHNYDYYQNLWDPSTAPKSRFCSEFGIQSL 444
++ P QSL
Sbjct: 379 -VSGPP---------------------------------------------------QSL 386
Query: 445 PQLST-FQKVATEADLASWRTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEYFA-YLS 502
L+ +K + L R P F R+ ++F L + + S
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIP-FSERK----------LKFSNRF------LPVASPFHS 429
Query: 503 QIYQAGAIKTITEQMRRDKGVLREDGSGHNMG-ALYWQLNDTCDELGILIWQDMMFACNN 561
A I + + ++ + ++ +Y DT D D
Sbjct: 430 H-LLVPASDLINKDLVKNN----VSFNAKDIQIPVY----DTFD------GSD------- 467
Query: 562 YPATPTFLQSVRSEISQT-VRRVQHHPCIAVW 592
L+ + IS+ V + P W
Sbjct: 468 -------LRVLSGSISERIVDCIIRLPV--KW 490
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase,
glycosidase, disease mutat glycoprotein, hydrolase,
lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN
GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Length = 613
Score = 57.8 bits (140), Expect = 7e-09
Identities = 32/187 (17%), Positives = 59/187 (31%), Gaps = 29/187 (15%)
Query: 265 KEANMNMLRVWGGGVY-MSDYFYETCDELGILIWQ--DMMFACNNYPATPTFLQSVRSEI 321
+ N R Y ++ + CD GI++ + L +
Sbjct: 354 RWLGANAFRT---SHYPYAEEVMQMCDRYGIVVIDECPGVGLALPQFFNNVSLHHHMQVM 410
Query: 322 SQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDP 381
+ VRR ++HP + +W+ NE + E + K DP
Sbjct: 411 EEVVRRDKNHPAVVMWSVANE----------PASHLESAGYYLKMVI-AHTK----SLDP 455
Query: 382 TRP--YLTSSPTNGIESEKAKYALADNPYSNIYGDTHNYDYYQNLWDPSTA------PKS 433
+RP ++++S + + N Y + Y D + + Q K
Sbjct: 456 SRPVTFVSNSNYAADKGAPYVDVICLNSYYSWYHDYGHLELIQLQLATQFENWYKKYQKP 515
Query: 434 RFCSEFG 440
SE+G
Sbjct: 516 IIQSEYG 522
Score = 46.3 bits (110), Expect = 3e-05
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 26/164 (15%)
Query: 515 EQMRRDKGVLREDG-----SGHNMGALYWQLNDTCDELGILIWQ--DMMFACNNYPATPT 567
+ +D +LR G + H A CD GI++ +
Sbjct: 344 PLLVKDFNLLRWLGANAFRTSHYPYAEEVM--QMCDRYGIVVIDECPGVGLALPQFFNNV 401
Query: 568 FLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTL 627
L + + VRR ++HP + +W+ NE + E +
Sbjct: 402 SLHHHMQVMEEVVRRDKNHPAVVMWSVANE----------PASHLESAGYYLKMVI-AHT 450
Query: 628 KPIVLQYDPTRP--YLTSSPTNGIESEKAKYALADNPYSNIYGD 669
K DP+RP ++++S + + N Y + Y D
Sbjct: 451 K----SLDPSRPVTFVSNSNYAADKGAPYVDVICLNSYYSWYHD 490
Score = 42.0 bits (99), Expect = 6e-04
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 27/133 (20%)
Query: 67 LVSTKEANMNMLRVWGGGSEVELWWPNGYG-EQP-LYNLQITL----ASGVEMSTKSIKI 120
+V+ L+V V LWWP LY+L++ L + G ++ +
Sbjct: 249 VVANGTGTQGQLKV----PGVSLWWPYLMHERPAYLYSLEVQLTAQTSLGPVSDFYTLPV 304
Query: 121 GFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDILPE--RSNNESTIRDL 178
G RTV + F +N P Y G N + + + +
Sbjct: 305 GIRTVAV-----------TKSQFL--INGKPFYFHGVNK--HEDADIRGKGFDWPLLVKD 349
Query: 179 LVSTKEANMNMLR 191
+ N R
Sbjct: 350 FNLLRWLGANAFR 362
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural
genomics, glycosidase, PSI-2, protein initiative; 2.40A
{Bacteroides vulgatus}
Length = 801
Score = 56.3 bits (136), Expect = 2e-08
Identities = 29/164 (17%), Positives = 47/164 (28%), Gaps = 34/164 (20%)
Query: 265 KEANMNMLRVWGGGVYM-SDYFYETCDELGILIW----QDMMFACNNYPATPTFLQSVRS 319
K+ N +R S FY CD +GI++ F + +
Sbjct: 317 KDMGCNAIRT---SHNPFSPAFYNLCDTMGIMVLNEGLDGWNQPKAADDYGNYFDEWWQK 373
Query: 320 EISQTVRRVQHHPCIAVW-AGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQ 378
+++ ++R ++HP I +W GN E V+ Q
Sbjct: 374 DMTDFIKRDRNHPSIIMWSIGNEVTGA---------------TPEIQHNLVSLFH----Q 414
Query: 379 YDPTRPYLTSSPTNGIESEKAKYALADNPYSNIYGDTHNYDYYQ 422
DP RP T G N D ++
Sbjct: 415 LDPDRPV-----TQGGTDPTRGMKTDYQKKFNYL-DIIGFNGNG 452
Score = 55.5 bits (134), Expect = 4e-08
Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 31/135 (22%)
Query: 515 EQMRRDKGVLREDG-----SGHNMGALYWQLNDTCDELGILIW----QDMMFACNNYPAT 565
+ + +L++ G + HN + + + CD +GI++
Sbjct: 307 DLLHYRLKLLKDMGCNAIRTSHNPFSPAFY--NLCDTMGIMVLNEGLDGWNQPKAADDYG 364
Query: 566 PTFLQSVRSEISQTVRRVQHHPCIAVW-AGNNEMEGATIQKWYIRENPELYYKEYAELYV 624
F + + +++ ++R ++HP I +W GN E V
Sbjct: 365 NYFDEWWQKDMTDFIKRDRNHPSIIMWSIGNEVTGA---------------TPEIQHNLV 409
Query: 625 NTLKPIVLQYDPTRP 639
+ Q DP RP
Sbjct: 410 SLFH----QLDPDRP 420
Score = 37.4 bits (87), Expect = 0.017
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 24/112 (21%)
Query: 85 SEVELWWPNGYGEQP-LYNLQITL-ASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRY 142
+ LW P + P +Y L L + + +GFR +E +P
Sbjct: 233 RKPLLWSP----DSPNVYTLICQLTRDNKILDECRLPVGFRQLE-----FNPVSG----- 278
Query: 143 FYFEVNKVPIYSKGSNLIPVDILPER---SNNESTIRDLLVSTKEANMNMLR 191
F +N + KG + ++ L + K+ N +R
Sbjct: 279 --FLLNGKSLKIKGVCD--HHTVGAVGAAVPDDLLHYRLKL-LKDMGCNAIR 325
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain,
beta-sandwich domai glycosyl hydrolase, glycosida
hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB:
3k46_A* 3k4d_A* 3lpg_A* 3k4a_A
Length = 605
Score = 48.5 bits (116), Expect = 6e-06
Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 28/129 (21%)
Query: 67 LVSTKEANMNMLRVWGGGSEVELWWPNGYGEQP-LYNLQITLASGVEMSTKSIKIGFRTV 125
+V+T + L+V LW P + LY L +T S E +++G R+V
Sbjct: 225 VVATGQGTSGTLQV----VNPHLWQP----GEGYLYELCVTAKSQTECDIYPLRVGIRSV 276
Query: 126 ELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDILPER---SNNESTIRDLLVST 182
+ KG F +N P Y G + R +N + D +
Sbjct: 277 AV-----------KGEQFL--INHKPFYFTGFGR--HEDADLRGKGFDNVLMVHDHAL-M 320
Query: 183 KEANMNMLR 191
N R
Sbjct: 321 DWIGANSYR 329
Score = 47.3 bits (113), Expect = 1e-05
Identities = 30/217 (13%), Positives = 61/217 (28%), Gaps = 56/217 (25%)
Query: 265 KEANMNMLRVWGGGVYMS-----DYFYETCDELGILIW-------------------QDM 300
N R S + + DE GI++
Sbjct: 321 DWIGANSYR-------TSHYPYAEEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKP 373
Query: 301 MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELY 360
+ Q+ I + + R ++HP + +W+ NE +
Sbjct: 374 KELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANEP-----------DTRPQG 422
Query: 361 YKEYAELYVNTLKPIVLQYDPTRP--YLTSSPTNGIESEKAKYA--LADNPYSNIYGDTH 416
+EY + + DPTRP + + + L N Y Y +
Sbjct: 423 AREYFAPLAEATR----KLDPTRPITCVNVMFCDAHTDTISDLFDVLCLNRYYGWYVQSG 478
Query: 417 NYDYYQNLWD------PSTAPKSRFCSEFGIQSLPQL 447
+ + + + + + +E+G+ +L L
Sbjct: 479 DLETAEKVLEKELLAWQEKLHQPIIITEYGVDTLAGL 515
Score = 36.2 bits (84), Expect = 0.040
Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 34/117 (29%)
Query: 542 DTCDELGILIW-------------------QDMMFACNNYPATPTFLQSVRSEISQTVRR 582
D DE GI++ + Q+ I + + R
Sbjct: 341 DWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIAR 400
Query: 583 VQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRP 639
++HP + +W+ NE + +EY + + DPTRP
Sbjct: 401 DKNHPSVVMWSIANEP-----------DTRPQGAREYFAPLAEATR----KLDPTRP 442
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II
(PSI-II), glycosyl hydrolase family 2, jelly-roll fold;
2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB:
3dec_A
Length = 1010
Score = 47.9 bits (114), Expect = 9e-06
Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 33/162 (20%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSD-YFYETCDELGIL------IWQDMMFACNN 306
E +D+ + K+ N+NM+R Y + Y+Y+ CD G+ I M
Sbjct: 372 ELMEQDIRL-MKQHNINMVRN---SHYPTHPYWYQLCDRYGLYMIDEANIESHGMGYGPA 427
Query: 307 YPAT-PTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEM-EGATIQK--WYIRENP----- 357
A T+L + + R ++HP I +W+ NE G ++ +++
Sbjct: 428 SLAKDSTWLTAHMDRTHRMYERSKNHPAIVIWSQGNEAGNGINFERTYDWLKSVEKGRPV 487
Query: 358 -----------ELYYKEYAELYVNTLKPIVLQYDPTRPYLTS 388
++Y + Y V+ +K V + D RP++
Sbjct: 488 QYERAELNYNTDIYCRMYR--SVDEIKAYVGKKDIYRPFILC 527
Score = 44.4 bits (105), Expect = 1e-04
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 34/196 (17%)
Query: 10 FRTVEL-------VQD-HVDPNHLEKGRYFYFEVN-KVPIYSKGSNLIPVDV-LPERSNN 59
R V L + D V L+K +Y N +V + + + L + S
Sbjct: 215 ERDVYLYSTPKQYIADYKVSA-SLDKEKYKEGIFNLEVTVEGPSATASSIAYTLKDASGK 273
Query: 60 ESTIRDLLVSTKEANMNMLRVWGGGSEVELWWPNGYGEQP-LYNLQITL--ASGVEMSTK 116
+ + ++ + + +EV+ W E P LY L + L A G
Sbjct: 274 AVLQDAINIKSRGLSNFIAFDEKKIAEVKAWNA----EHPNLYTLVLELKDAQGKVTELT 329
Query: 117 SIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDILPE-RSNNESTI 175
++GFRT E+ K F +N VP+ KG+N + R+ ++ +
Sbjct: 330 GCEVGFRTSEI-----------KDGRFC--INGVPVLVKGTNR--HEHSQLGRTVSKELM 374
Query: 176 RDLLVSTKEANMNMLR 191
+ K+ N+NM+R
Sbjct: 375 EQDIRLMKQHNINMVR 390
Score = 38.6 bits (90), Expect = 0.007
Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 44/169 (26%)
Query: 511 KTIT-EQMRRDKGVLREDGSGHNMGAL---------YWQLNDTCDELGIL------IWQD 554
+T++ E M +D ++++ HN+ + YW CD G+ I
Sbjct: 367 RTVSKELMEQDIRLMKQ----HNINMVRNSHYPTHPYWY--QLCDRYGLYMIDEANIESH 420
Query: 555 MMFACNNYPAT-PTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEM-EGATIQK--WYIRE 610
M A T+L + + R ++HP I +W+ NE G ++ +++
Sbjct: 421 GMGYGPASLAKDSTWLTAHMDRTHRMYERSKNHPAIVIWSQGNEAGNGINFERTYDWLKS 480
Query: 611 NP----------------ELYYKEYAELYVNTLKPIVLQYDPTRPYLTS 643
++Y + Y V+ +K V + D RP++
Sbjct: 481 VEKGRPVQYERAELNYNTDIYCRMYR--SVDEIKAYVGKKDIYRPFILC 527
Score = 32.9 bits (75), Expect = 0.41
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 3 TKSIKIGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNEST 62
++GFRT E+ K F +N VP+ KG+N L R+ ++
Sbjct: 328 LTGCEVGFRTSEI-----------KDGRFC--INGVPVLVKGTNRHEHSQL-GRTVSKEL 373
Query: 63 IRDLLVSTKEANMNMLR 79
+ + K+ N+NM+R
Sbjct: 374 MEQDIRLMKQHNINMVR 390
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase,
hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Length = 1032
Score = 47.2 bits (112), Expect = 2e-05
Identities = 59/339 (17%), Positives = 92/339 (27%), Gaps = 101/339 (29%)
Query: 52 VLPERSNNESTIRDLLVSTKEANMNMLRVWGGGSEVELWWPNGYGEQP-LYNLQITL--A 108
+L E + N + +S E W E P LY Q+ L +
Sbjct: 268 LLNEENGNTTFSTKEFISFSTKKNEETAFKINVKAPEHW----TAENPTLYKYQLDLIGS 323
Query: 109 SGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDILPER 168
G + + +GFR VEL K VN I +G N R
Sbjct: 324 DGSVIQSIKHHVGFRQVEL-----------KDGNIT--VNGKDILFRGVNRHDHHPRFGR 370
Query: 169 SNNESTIRDLLVSTKEANMNMLRVWGGGVYMSD-YFYEPVDILPERSNNESTIRDLLVST 227
+ + L+ K+ N+N +R Y + Y+ D L
Sbjct: 371 AVPLDFVVRDLILMKKFNINAVRN---SHYPNHPKVYDLFDKL----------------- 410
Query: 228 KEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYE 287
G ++ D+ H GV +
Sbjct: 411 -------------GFWVIDEADLETH------------------------GVQEPFNRHT 433
Query: 288 TCDELGILIWQDMMFACNNYPA-TPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEM-EG 345
+ + +Y + P + + SQ V R +HP I +W+ NE G
Sbjct: 434 NLEAEYPDTKNKLYDVNAHYLSDNPEYEVAYLDRASQLVLRDVNHPSIIIWSLGNEACYG 493
Query: 346 ATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRP 384
+ Y K+ DPTR
Sbjct: 494 RNHKAMY------KLIKQ---------------LDPTRL 511
Score = 34.1 bits (78), Expect = 0.19
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 5 SIKIGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIR 64
+GFR VEL K VN I +G N R+ +
Sbjct: 332 KHHVGFRQVEL-----------KDGNIT--VNGKDILFRGVNRHDHHPRFGRAVPLDFVV 378
Query: 65 DLLVSTKEANMNMLR 79
L+ K+ N+N +R
Sbjct: 379 RDLILMKKFNINAVR 393
Score = 31.0 bits (70), Expect = 1.7
Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 22/111 (19%)
Query: 530 GHNMGALYWQLNDTCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCI 589
H + + + + E + + P + + SQ V R +HP I
Sbjct: 422 THGVQEPFNRHTNLEAEYPDTKNKLYDVNAHYLSDNPEYEVAYLDRASQLVLRDVNHPSI 481
Query: 590 AVWAGNNEM-EGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRP 639
+W+ NE G + Y K+ DPTR
Sbjct: 482 IIWSLGNEACYGRNHKAMY------KLIKQ---------------LDPTRL 511
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell
membrane, fungal cell WALL, transglycosyl glucan,
membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae}
PDB: 2w62_A* 2w63_A*
Length = 555
Score = 46.1 bits (108), Expect = 3e-05
Identities = 24/195 (12%), Positives = 59/195 (30%), Gaps = 13/195 (6%)
Query: 238 WGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMS-DYFYETCDELGILI 296
G + T Y D + K +N LRV+ S D E G+ +
Sbjct: 70 NANGAFETSYIDALADPKICLRDIPFLKMLGVNTLRVYAIDPTKSHDICMEALSAEGMYV 129
Query: 297 WQDM-MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRE 355
D+ + P++ + + + P + + N+ +
Sbjct: 130 LLDLSEPDISINRENPSWDVHIFERYKSVIDAMSSFPNLLGYFAGNQ---------VTND 180
Query: 356 NPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIES--EKAKYALADNPYSNIYG 413
+ + + + + K + + + + S + + A+Y + + ++ YG
Sbjct: 181 HTNTFASPFVKAAIRDAKEYISHSNHRKIPVGYSTNDDAMTRDNLARYFVCGDVKADFYG 240
Query: 414 DTHNYDYYQNLWDPS 428
+ + S
Sbjct: 241 INMYEWCGYSTYGTS 255
Score = 31.8 bits (71), Expect = 0.88
Identities = 5/58 (8%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 542 DTCDELGILIWQDM-MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEM 598
+ G+ + D+ + P++ + + + P + + N++
Sbjct: 120 EALSAEGMYVLLDLSEPDISINRENPSWDVHIFERYKSVIDAMSSFPNLLGYFAGNQV 177
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel,
hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1
b.18.1.5 b.30.5.1 c.1.8.3
Length = 1024
Score = 45.3 bits (107), Expect = 7e-05
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSD-YFYETCDELGILI---------WQDMMFA 303
DL + K N+N +R Y + DE+G + +
Sbjct: 349 AGAREDLAL-MKRFNVNAIRT---SHYPPHPRLLDLADEMGFWVILECDLETHGFEAGGW 404
Query: 304 CNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNE 342
N P + ++ + +TV R ++HP I +W+ NE
Sbjct: 405 VENPSDVPAWRDALVDRMERTVERDKNHPSIVMWSLGNE 443
Score = 41.0 bits (96), Expect = 0.001
Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 42/191 (21%)
Query: 10 FRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVS 69
FR V L + + G+ I ++ ++T + +S
Sbjct: 210 FRDVTLQ--ARPAGGITD---AWLRTGWSARSGAGTGTIDPEI-----TADATAFPVTLS 259
Query: 70 TKEANMNMLRVWGGGSE--------VELWWPNGYGEQP-LYNLQITLASGVEMSTKSIKI 120
E +N+ W E VE W E P LY ++ A+ S+++
Sbjct: 260 VPELGVNV--TWKSAEEVAPLALENVEPWSA----EVPRLYEASVSSAAESI----SVRL 309
Query: 121 GFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDILPERSNNESTIRDLLV 180
GFRTV + G F VN + G N R +E+ R+ L
Sbjct: 310 GFRTVRI-----------VGDQFL--VNGRRVVFHGVNRHETHPDRGRVFDEAGAREDLA 356
Query: 181 STKEANMNMLR 191
K N+N +R
Sbjct: 357 LMKRFNVNAIR 367
Score = 34.9 bits (80), Expect = 0.097
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 3 TKSIKIGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNEST 62
+ S+++GFRTV + G F VN + G N R +E+
Sbjct: 304 SISVRLGFRTVRI-----------VGDQFL--VNGRRVVFHGVNRHETHPDRGRVFDEAG 350
Query: 63 IRDLLVSTKEANMNMLR 79
R+ L K N+N +R
Sbjct: 351 AREDLALMKRFNVNAIR 367
Score = 34.9 bits (80), Expect = 0.10
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 24/101 (23%)
Query: 515 EQMRRDKGVLREDGSGHNMGAL---------YWQLNDTCDELGILI---------WQDMM 556
R D +++ N+ A+ D DE+G + +
Sbjct: 349 AGAREDLALMKR----FNVNAIRTSHYPPHPRLL--DLADEMGFWVILECDLETHGFEAG 402
Query: 557 FACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNE 597
N P + ++ + +TV R ++HP I +W+ NE
Sbjct: 403 GWVENPSDVPAWRDALVDRMERTVERDKNHPSIVMWSLGNE 443
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel),
jelly-roll barrel, immunoglobulin, beta supersandwich,
hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP:
b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A
1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A*
1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A*
3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ...
Length = 1023
Score = 44.4 bits (105), Expect = 1e-04
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 20/110 (18%)
Query: 85 SEVELWWPNGYGEQP-LYNLQITL--ASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGR 141
+LW E P LY + L A G + ++ +GFR V + +
Sbjct: 296 ENPKLWSA----EIPNLYRAVVELHTADGTLIEAEACDVGFREVRI-----------ENG 340
Query: 142 YFYFEVNKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLR 191
+N P+ +G N L + +E T+ ++ K+ N N +R
Sbjct: 341 LLL--LNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVR 388
Score = 42.9 bits (101), Expect = 4e-04
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 33/139 (23%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSD-YFYETCDELGILIWQDM------MFACNN 306
++ ++D+L+ K+ N N +R Y + +Y CD G+ + + M N
Sbjct: 370 QTMVQDILL-MKQNNFNAVRC---SHYPNHPLWYTLCDRYGLYVVDEANIETHGMVPMNR 425
Query: 307 YPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEME-GATIQKWYIRENPELYYKEYA 365
P +L ++ +++ V+R ++HP + +W+ NE GA Y + K
Sbjct: 426 LTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALY------RWIKS-- 477
Query: 366 ELYVNTLKPIVLQYDPTRP 384
DP+RP
Sbjct: 478 -------------VDPSRP 483
Score = 33.6 bits (77), Expect = 0.24
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 3 TKSIKIGFRTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNEST 62
++ +GFR V + + +N P+ +G N L + +E T
Sbjct: 325 AEACDVGFREVRI-----------ENGLLL--LNGKPLLIRGVNRHEHHPLHGQVMDEQT 371
Query: 63 IRDLLVSTKEANMNMLR 79
+ ++ K+ N N +R
Sbjct: 372 MVQDILLMKQNNFNAVR 388
Score = 32.9 bits (75), Expect = 0.40
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 28/105 (26%)
Query: 542 DTCDELGILIWQDM------MFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGN 595
CD G+ + + M N P +L ++ +++ V+R ++HP + +W+
Sbjct: 400 TLCDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLG 459
Query: 596 NEME-GATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRP 639
NE GA Y + K DP+RP
Sbjct: 460 NESGHGANHDALY------RWIKS---------------VDPSRP 483
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase,
mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio
mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*
Length = 440
Score = 32.7 bits (73), Expect = 0.43
Identities = 57/456 (12%), Positives = 110/456 (24%), Gaps = 76/456 (16%)
Query: 145 FEVNKVPIYSKGSNL--IPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY 202
FE+ P G N+ P + + L + K +N LRV
Sbjct: 32 FELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEIN 91
Query: 203 FYEPVDILPERSN-NESTIRDLLVSTKEANMNMLRV-------WGGGVYMTRYTDMARHE 254
+ N +E+ ++ L E + V W MT+Y E
Sbjct: 92 SAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFWQWSGGMTQYMAWIEGE 151
Query: 255 STIRDLLVSTKEANMNMLRVWGGGVYMSDYFY--ETCDELGILIWQDMMFACNNYPATPT 312
N+ W + S FY E + + ++ N+
Sbjct: 152 PVQDP----------NVTNEWEAFMAKSASFYRSEKAQQEYRKTLEKIITRVNSI----- 196
Query: 313 FLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTL 372
+ I W NE E ++Y
Sbjct: 197 -----------NGKAYVDDATIMSWQLANEPRPGN--SQTTAEEKQIYIDWVHAAA---- 239
Query: 373 KPIVLQYDPTRPYLTSSPTNGIESEKAKYALADNPYSNI-YGDTHNYDYYQNLWDPSTAP 431
+ D + S + + + +I Y H + W T P
Sbjct: 240 -AYIKTLDAHHLVSSGSEGEMGSVNDMQVFIDAHATPDIDYLTYHMW-IRNWSWFDKTKP 297
Query: 432 KSRFCSEFGIQSLPQLSTFQKVATEADLASWRTPFFDSRQHLAGGTGILESSVGHQFEIG 491
+ S + + + A P + G+ + +
Sbjct: 298 AETWPSAW------EKAQNYMRAHIDVAKQLNKPL------VLEEFGL--DRDMGSYAMD 343
Query: 492 NLTLEYFAYLSQIYQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLNDT-CDELGIL 550
+ T Y +++ + + + + G W N
Sbjct: 344 STTEYRDNYFRGVFE-----LMLASLEQGEPS---------AGYNIWAWNGYGRTTRANY 389
Query: 551 IWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHH 586
WQ+ + P + V + T+ ++
Sbjct: 390 WWQEGDDFMGDPPQEEQGMYGVFDTDTSTIAIMKEF 425
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta
barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Length = 353
Score = 32.0 bits (72), Expect = 0.67
Identities = 19/145 (13%), Positives = 37/145 (25%), Gaps = 31/145 (21%)
Query: 238 WGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWG---GGVYMS------------ 282
W + ++ +ST L + N +RVW G
Sbjct: 28 WVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGIDN 87
Query: 283 ------DYFYETCDELGILI----WQDMMFACNNYPATPTFLQSVRSE------ISQTVR 326
+ ILI W + +Y + + + + +
Sbjct: 88 TLISDMRAYLHAAQRHNILIFFTLWNGAVKQSTHYRLNGLMVDTRKLQSYIDHALKPMAN 147
Query: 327 RVQHHPCIAVWAGNNEMEGATIQKW 351
+++ + W NE EG
Sbjct: 148 ALKNEKALGGWDIMNEPEGEIKPGE 172
Score = 28.5 bits (63), Expect = 6.6
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 11/88 (12%)
Query: 32 YFEVNKVPIYSKGSNLIPVDVLPERSN-----NESTIRDLLVSTKEANMNMLRVWGG--G 84
N I+ G+N V+ + + +ST L + N +RVW G
Sbjct: 11 NLNYNGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIEG 70
Query: 85 SEVELW----WPNGYGEQPLYNLQITLA 108
+ + G + +++ L
Sbjct: 71 ESTPEFDNNGYVTGIDNTLISDMRAYLH 98
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP;
2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A
Length = 496
Score = 31.0 bits (69), Expect = 1.6
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 234 MLRVWGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYETC 289
+ R G+++ + + D+L + K+ + +LR W GG + +Y ++
Sbjct: 30 LGRCIYEGLWVGEDSPIPNTNGIRNDVLEALKQMKIPVLR-WPGGCFADEYHWKDG 84
>3g3o_A Vacuolar transporter chaperone 2; polyphosphate polymerase,
polyphosphate kinase, VTC complex, tunnel enzyme,
membrane, phosphoprotein; 2.10A {Saccharomyces
cerevisiae}
Length = 392
Score = 30.6 bits (68), Expect = 2.0
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 353 IRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKAKYALADNPYSNIY 412
+R P L Y + + + SS + D + +Y
Sbjct: 62 LRHLPVLVYANVPSENDDLVNRFESDISNNDEIVGSSSSTSSVEHGLGARSFDPLINTLY 121
Query: 413 GDTHNYD-YYQNLWDPSTAPKSRF 435
D +++ Y L ++AP R
Sbjct: 122 FDNEHFELYNDKLLKLNSAPTLRL 145
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan,
hydrolase; HET: AHR; 2.7A {Clostridium thermocellum}
SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A
Length = 513
Score = 29.9 bits (66), Expect = 3.4
Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query: 230 ANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYETC 289
+ + L + + +D++ KE N+ ++R + GG ++S+YF+E
Sbjct: 34 SFVEHLGRAVYDGLYQPGNSKSDEDGFRKDVIELVKELNVPIIR-YPGGNFVSNYFWED- 91
Query: 290 DELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGA 346
G+ +D + + Q +E ++ ++V +AV G + A
Sbjct: 92 ---GVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDA 145
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 5.4
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 10/56 (17%)
Query: 321 ISQTVRRVQHHPCIAVWAGNN--------EMEGATIQKWYIRENPEL--YYKEYAE 366
I+Q R Q I W Q+W + +L + + +E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Score = 28.6 bits (63), Expect = 5.4
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 10/56 (17%)
Query: 576 ISQTVRRVQHHPCIAVWAGNN--------EMEGATIQKWYIRENPEL--YYKEYAE 621
I+Q R Q I W Q+W + +L + + +E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D
glucanase, hydrolase; HET: CT3; 2.08A {Clostridium
cellulovorans} PDB: 3ndy_A*
Length = 345
Score = 28.4 bits (63), Expect = 8.2
Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 5/127 (3%)
Query: 322 SQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELY--YKEYAELYVNTLKPIVLQY 379
+Q + + ++ NE + + E Y VN ++
Sbjct: 129 TQIANNFKKYGDHLIFETMNEPRPVGASLQWTGGSYENREVVNRYNLTAVNAIRAT-GGN 187
Query: 380 DPTRPYLTSSPTNGIESEKAKYALADNPYSNIYGDTHNYDYYQNLWDPSTAPKSRFCSEF 439
+ TR + + S + N S + H Y Y + S + S++
Sbjct: 188 NATRYIMVPTLAASAMSTTINDLVIPNNDSKVIVSLHMYSPYF--FAMDINGTSSWGSDY 245
Query: 440 GIQSLPQ 446
SL
Sbjct: 246 DKSSLDS 252
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG
MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB:
1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Length = 344
Score = 28.2 bits (62), Expect = 8.5
Identities = 22/161 (13%), Positives = 43/161 (26%), Gaps = 30/161 (18%)
Query: 216 NESTIRDLLVSTKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVW 275
N + + + + ++RVWG T+ + + ST + L+
Sbjct: 34 NHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKL-SATGSTINTGADGLQTL 92
Query: 276 GGGVYMSDYFYETCDELGILI-------WQDMMFAC----------NNYPATPTFLQSVR 318
DY ++ ++ + + W D + R
Sbjct: 93 -------DYVVQSAEQHNLKLIIPFVNNWSDYGGINAYVNAFGGNATTWYTNTAAQTQYR 145
Query: 319 SEISQTVRRVQHHPCIAVWAGNNEM-----EGATIQKWYIR 354
+ V R + I W NE I +W
Sbjct: 146 KYVQAVVSRYANSTAIFAWELGNEPRCNGCSTDVIVQWATS 186
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,466,011
Number of extensions: 628534
Number of successful extensions: 1260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1203
Number of HSP's successfully gapped: 78
Length of query: 669
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 569
Effective length of database: 3,909,693
Effective search space: 2224615317
Effective search space used: 2224615317
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.9 bits)