RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy438
(669 letters)
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 348
Score = 154 bits (389), Expect = 3e-42
Identities = 90/293 (30%), Positives = 138/293 (47%), Gaps = 21/293 (7%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTF 313
+ L KEANMNM+R+WGGG Y ++ FY+ DE GIL+WQD MFAC YP+ PTF
Sbjct: 44 TERYQTLFRDMKEANMNMVRIWGGGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTF 103
Query: 314 LQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGAT----IQKWYIRENPELYYKEYAELYV 369
L+ V +E +RR+++H +A+W GNNE+ A +K + E + Y +L+
Sbjct: 104 LKRVEAEAVYNIRRLRNHASLAMWCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLFR 163
Query: 370 NTLKPIVLQYDPTRPYLTSSPTNGIESEKAKYALADNPYSNIYGDTHNYDYYQNLWDPST 429
L V ++D R Y+ SSP + Y + ++
Sbjct: 164 ELLPSTVKEFDSDRFYVHSSPYLANWGR-------PESWGTGDSHNWGVWYGKKPFESLD 216
Query: 430 APKSRFCSEFGIQSLPQLSTFQKVATEADLASWRTPFFDSRQHLAGGTGILESSVGHQFE 489
RF SEFG QS P++ T A D + ++ Q + G ++ + + +
Sbjct: 217 TDLPRFMSEFGFQSFPEMKTIAAFAAPEDY-QIESEVMNAHQKSSIGNSLIRTYMERDYI 275
Query: 490 IGNLTLEYFAYLSQIYQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLND 542
I + E F Y+ + Q ++ E RR++ + MG LYWQLND
Sbjct: 276 IPE-SFEDFVYVGLVLQGQGMRHGLEAHRRNR--------PYCMGTLYWQLND 319
Score = 75.1 bits (183), Expect = 3e-15
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 515 EQMRRDKGVLREDG-------SGHNMGALYWQLNDTCDELGILIWQDMMFACNNYPATPT 567
E+ + ++E G + D DE GIL+WQD MFAC YP+ PT
Sbjct: 45 ERYQTLFRDMKEANMNMVRIWGGGTYENNLFY--DLADENGILVWQDFMFACTPYPSDPT 102
Query: 568 FLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGAT----IQKWYIRENPELYYKEYAELY 623
FL+ V +E +RR+++H +A+W GNNE+ A +K + E + Y +L+
Sbjct: 103 FLKRVEAEAVYNIRRLRNHASLAMWCGNNEILEALKYWGFEKKFTPEVYQGLMHGYDKLF 162
Query: 624 VNTLKPIVLQYDPTRPYLTSSPTNGIESEKAKYALADNPYSNIY 667
L V ++D R Y+ SSP + D+ ++
Sbjct: 163 RELLPSTVKEFDSDRFYVHSSPYLANWGRPESWGTGDSHNWGVW 206
Score = 71.2 bits (173), Expect = 7e-14
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 123 RTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDILPERSNNESTIRDLLVST 182
RT+ ++ + + G FYFEVN +P+++KG+N IP D L E
Sbjct: 1 RTIRVVNEK-----DKDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFR-DM 54
Query: 183 KEANMNMLRVWGGGVYMSDYFYEPVD 208
KEANMNM+R+WGGG Y ++ FY+ D
Sbjct: 55 KEANMNMVRIWGGGTYENNLFYDLAD 80
Score = 63.5 bits (153), Expect = 2e-11
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 11 RTVELVQDHVDPNHLEKGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVST 70
RT+ +V + + G FYFEVN +P+++KG+N IP D L E
Sbjct: 1 RTIRVVNEK-----DKDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFR-DM 54
Query: 71 KEANMNMLRVWGGG 84
KEANMNM+R+WGGG
Sbjct: 55 KEANMNMVRIWGGG 68
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 339
Score = 141 bits (355), Expect = 1e-37
Identities = 45/318 (14%), Positives = 99/318 (31%), Gaps = 47/318 (14%)
Query: 241 GVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDM 300
G T + +E+ D L +N +R+ G D F++ D+LG+L
Sbjct: 25 GGGYTPDLFLRWNETAAADKLKYVLNLGLNTVRLEGH--IEPDEFFDIADDLGVLTMPGW 82
Query: 301 MFA----------CNNYPATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQK 350
P + ++ + R++ HP + + ++
Sbjct: 83 ECCDKWEGQVNGEEKGEPWVESDYPIAKASMFSEAERLRDHPSVISFHIGSDFA------ 136
Query: 351 WYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIESEKAKYALADNPYSN 410
+ + Y++ +K D P + ++ + A N
Sbjct: 137 ---------PDRRIEQGYLDAMK----AADFLLPVIPAASARP-----SPITGASGMKMN 178
Query: 411 IYGDTHNYDYYQNLWDPSTAPKSRFCSEFGIQ-SLPQLSTFQKVATEADLASWRTPFFDS 469
D Y+ + F SE +P + T +++ + ++L + +
Sbjct: 179 GPYDYVPPVYWYDKSQKDRGGAWSFNSETSAGVDIPTMDTLKRMMSASELDTM-WKNPSA 237
Query: 470 RQHLAGGTGILESSVGHQFEIGNLT-----LEYFAYLSQIYQAGAIKTITEQMRRDKGVL 524
+Q+ + + + L F +Q+ Q ++ E R+
Sbjct: 238 KQYHRSSSDTFGNLKLFGDALTKRYGASANLNDFVRKAQLSQYENVRAEFESHSRNYT-- 295
Query: 525 REDGSGHNMGALYWQLND 542
D + + G +YW LN
Sbjct: 296 --DSTNPSTGLIYWMLNS 311
Score = 67.3 bits (163), Expect = 1e-12
Identities = 16/136 (11%), Positives = 38/136 (27%), Gaps = 29/136 (21%)
Query: 542 DTCDELGILIWQDMMFA----------CNNYPATPTFLQSVRSEISQTVRRVQHHPCIAV 591
D D+LG+L P + ++ + R++ HP +
Sbjct: 69 DIADDLGVLTMPGWECCDKWEGQVNGEEKGEPWVESDYPIAKASMFSEAERLRDHPSVIS 128
Query: 592 WAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNGIES 651
+ ++ + + Y++ +K D P + ++
Sbjct: 129 FHIGSDFA---------------PDRRIEQGYLDAMK----AADFLLPVIPAASARPSPI 169
Query: 652 EKAKYALADNPYSNIY 667
A + PY +
Sbjct: 170 TGASGMKMNGPYDYVP 185
Score = 46.1 bits (108), Expect = 7e-06
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 140 GRYFYFEVNKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYM 199
GR + VN P+ +G P L NE+ D L +N +R+ G
Sbjct: 11 GRQYS--VNGKPLLIRGGGYTPDLFLR---WNETAAADKLKYVLNLGLNTVRLEGH--IE 63
Query: 200 SDYFYEPVD 208
D F++ D
Sbjct: 64 PDEFFDIAD 72
Score = 42.2 bits (98), Expect = 1e-04
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 28 GRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWG 82
GR + VN P+ +G P L NE+ D L +N +R+ G
Sbjct: 11 GRQYS--VNGKPLLIRGGGYTPDLFLR---WNETAAADKLKYVLNLGLNTVRLEG 60
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 65.0 bits (157), Expect = 5e-12
Identities = 34/218 (15%), Positives = 61/218 (27%), Gaps = 23/218 (10%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYP--ATP 311
+ + N R + + CD GI++ + P
Sbjct: 35 WPLLVKDFNLLRWLGANAFRTSHYPYA--EEVMQMCDRYGIVVIDECPGVGLALPQFFNN 92
Query: 312 TFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNT 371
L + + VRR ++HP + +W+ NE Y + + K
Sbjct: 93 VSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLKMVIAHTKS-------- 144
Query: 372 LKPIVLQYDPTRPYLTSSPTNGIESEKAKYALADNPYSNIYGDTHNYDYYQNLWDPSTAP 431
DP+RP S +N + A Y + Y Y +L
Sbjct: 145 -------LDPSRPVTFVSNSNYAADKGAPY----VDVICLNSYYSWYHDYGHLELIQLQL 193
Query: 432 KSRFCSEFGIQSLPQLSTFQKVATEADLASWRTPFFDS 469
++F + + P + + T A F
Sbjct: 194 ATQFENWYKKYQKPIIQSEYGAETIAGFHQDPPLMFTE 231
Score = 44.2 bits (103), Expect = 3e-05
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 145 FEVNKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFY 204
F +N P Y G N + + + + + N R +
Sbjct: 8 FLINGKPFYFHGVNKHEDADIRGKGFDWPLLVKDFNLLRWLGANAFRTSHYPYA--EEVM 65
Query: 205 E 205
+
Sbjct: 66 Q 66
Score = 43.4 bits (101), Expect = 5e-05
Identities = 9/58 (15%), Positives = 16/58 (27%)
Query: 33 FEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGSEVELW 90
F +N P Y G N + + + + + N R E+
Sbjct: 8 FLINGKPFYFHGVNKHEDADIRGKGFDWPLLVKDFNLLRWLGANAFRTSHYPYAEEVM 65
Score = 40.4 bits (93), Expect = 4e-04
Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 24/149 (16%)
Query: 515 EQMRRDKGVLREDG-----SGHNMGALYWQLNDTCDELGILIWQDMMFACNNYP--ATPT 567
+ +D +LR G + H A CD GI++ + P
Sbjct: 36 PLLVKDFNLLRWLGANAFRTSHYPYAEEVM--QMCDRYGIVVIDECPGVGLALPQFFNNV 93
Query: 568 FLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTL 627
L + + VRR ++HP + +W+ NE Y + + K
Sbjct: 94 SLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLKMVIAHTKS--------- 144
Query: 628 KPIVLQYDPTRPYLTSSPTNGIESEKAKY 656
DP+RP S +N + A Y
Sbjct: 145 ------LDPSRPVTFVSNSNYAADKGAPY 167
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 297
Score = 57.6 bits (138), Expect = 1e-09
Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 11/144 (7%)
Query: 251 ARHESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYPA- 309
E+ R+ L K N+N +R + + DE+G + + + + A
Sbjct: 32 VFDEAGAREDLALMKRFNVNAIRTSHYPPH--PRLLDLADEMGFWVILECDLETHGFEAG 89
Query: 310 --------TPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYY 361
P + ++ + +TV R ++HP I +W+ NE +
Sbjct: 90 GWVENPSDVPAWRDALVDRMERTVERDKNHPSIVMWSLGNESGTGSNLAAMAAWAHARDS 149
Query: 362 KEYAELYVNTLKPIVLQYDPTRPY 385
+ Y
Sbjct: 150 SRPVHYEGDYTGAYTDVYSRMYSS 173
Score = 44.5 bits (104), Expect = 2e-05
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 139 KGRYFYFEVNKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVY 198
G F VN + G N R +E+ R+ L K N+N +R +
Sbjct: 4 VGDQFL--VNGRRVVFHGVNRHETHPDRGRVFDEAGAREDLALMKRFNVNAIRTSHYPPH 61
Query: 199 MSDYFYE 205
+
Sbjct: 62 --PRLLD 66
Score = 43.8 bits (102), Expect = 4e-05
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 27 KGRYFYFEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGG 84
G F VN + G N R +E+ R+ L K N+N +R
Sbjct: 4 VGDQFL--VNGRRVVFHGVNRHETHPDRGRVFDEAGAREDLALMKRFNVNAIRTSHYP 59
Score = 38.0 bits (87), Expect = 0.003
Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 16/140 (11%)
Query: 515 EQMRRDKGVLREDG-----SGHNMGALYWQLNDTCDELGILIWQDMMFACNNYPA----- 564
R D +++ + H D DE+G + + + + A
Sbjct: 36 AGAREDLALMKRFNVNAIRTSHYPPHPRLL--DLADEMGFWVILECDLETHGFEAGGWVE 93
Query: 565 ----TPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYA 620
P + ++ + +TV R ++HP I +W+ NE +
Sbjct: 94 NPSDVPAWRDALVDRMERTVERDKNHPSIVMWSLGNESGTGSNLAAMAAWAHARDSSRPV 153
Query: 621 ELYVNTLKPIVLQYDPTRPY 640
+ Y
Sbjct: 154 HYEGDYTGAYTDVYSRMYSS 173
>d2vzsa1 b.1.4.1 (A:226-335) Exochitosanase CsxA, domains 2, 4 and 5
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 110
Score = 48.1 bits (114), Expect = 1e-07
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 85 SEVELWWPNGYGEQPLYNLQITL-ASGVEMSTKSIKIGFR 123
+WWP G G Q Y+L +T G K G R
Sbjct: 71 DRPNVWWPAGMGGQHRYDLDLTASVGGTPSDAAKSKFGVR 110
>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 350
Score = 47.4 bits (111), Expect = 3e-06
Identities = 30/274 (10%), Positives = 62/274 (22%), Gaps = 66/274 (24%)
Query: 236 RVWGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRVWG------------------- 276
+ W + ++ +ST L + N +RVW
Sbjct: 23 QAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGI 82
Query: 277 --GGVYMSDYFYETCDELGILIWQDMMFACNNYPA----------TPTFLQSVRSEISQT 324
+ + ILI+ + T + +
Sbjct: 83 DNTLISDMRAYLHAAQRHNILIFFTLWNGAVKQSTHYRLNGLMVDTRKLQSYIDHALKPM 142
Query: 325 VRRVQHHPCIAVWAGNNEM---------------EGATIQKWYIRENPELYYKEYAELYV 369
+++ + W NE + + LY + +V
Sbjct: 143 ANALKNEKALGGWDIMNEPEGEIKPGESSSEPCFDTRHLSGSGAGWAGHLYSAQEIGRFV 202
Query: 370 NTLKPIVLQYDPTRPYLTSSPTNGIESE-----------KAKYALADNPYSNIYGDTHNY 418
N + + DP S +++ A + + H Y
Sbjct: 203 NWQAAAIKEVDPGAMVTVGSWNMKADTDAMGFHNLYSDHCLVKAGGKQSGTLSFYQVHTY 262
Query: 419 DYYQNLWDPS---------TAPKSRFCSEFGIQS 443
D+ + + S K EF +
Sbjct: 263 DWQNHFGNESPFKHSFSNFRLKKPMVIGEFNQEH 296
Score = 35.1 bits (79), Expect = 0.024
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 33 FEVNKVPIYSKGSNLIPVDVLPE-----RSNNESTIRDLLVSTKEANMNMLRVWGGGSEV 87
N I+ G+N V+ + S +ST L + N +RVW
Sbjct: 9 LNYNGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIEGE 68
Query: 88 ELWWPNGYGEQPLYN 102
+ G +
Sbjct: 69 STPEFDNNGYVTGID 83
Score = 30.1 bits (66), Expect = 0.94
Identities = 14/139 (10%), Positives = 31/139 (22%), Gaps = 25/139 (17%)
Query: 539 QLNDTCDELGILIWQDMMFACNNYPA----------TPTFLQSVRSEISQTVRRVQHHPC 588
ILI+ + T + + +++
Sbjct: 92 AYLHAAQRHNILIFFTLWNGAVKQSTHYRLNGLMVDTRKLQSYIDHALKPMANALKNEKA 151
Query: 589 IAVWAGNNEM---------------EGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQ 633
+ W NE + + LY + +VN + +
Sbjct: 152 LGGWDIMNEPEGEIKPGESSSEPCFDTRHLSGSGAGWAGHLYSAQEIGRFVNWQAAAIKE 211
Query: 634 YDPTRPYLTSSPTNGIESE 652
DP S +++
Sbjct: 212 VDPGAMVTVGSWNMKADTD 230
>d2je8a1 b.1.4.1 (A:220-330) Beta-mannosidase, domains 2, 4 and 5
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 111
Score = 42.8 bits (100), Expect = 1e-05
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 85 SEVELWWPNGYGEQPLYNLQITL-ASGVEMSTKSIKIG 121
+ W PNG+G LY+ + ++ +S +IG
Sbjct: 73 TNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQSHRIG 110
>d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3
{Escherichia coli [TaxId: 562]}
Length = 292
Score = 43.8 bits (102), Expect = 4e-05
Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 22/168 (13%)
Query: 145 FEVNKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFY 204
+N P+ +G N L + +E T+ ++ K+ N N +R +Y
Sbjct: 9 LLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHY--PNHPLWY 66
Query: 205 EPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVST 264
D +E G V M R TD R + + +
Sbjct: 67 TLCDRYGLYVVDE----------------ANIETHGMVPMNRLTDDPRWLPAMSERVTRM 110
Query: 265 KEANMN----MLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYP 308
+ + N ++ G + + +
Sbjct: 111 VQRDRNHPSVIIWSLGNESGHGANHDALYRWIKSVDPSRPVQYEGGGA 158
Score = 43.1 bits (100), Expect = 6e-05
Identities = 11/59 (18%), Positives = 23/59 (38%)
Query: 33 FEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGSEVELWW 91
+N P+ +G N L + +E T+ ++ K+ N N +R + +
Sbjct: 9 LLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYT 67
Score = 41.5 bits (96), Expect = 2e-04
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 13/113 (11%)
Query: 515 EQMRRDKGVLREDG-----SGHNMGALYWQLNDTCDELGILIWQDMMFAC------NNYP 563
+ M +D +++++ H W CD G+ + + N
Sbjct: 37 QTMVQDILLMKQNNFNAVRCSHYPNHPLWY--TLCDRYGLYVVDEANIETHGMVPMNRLT 94
Query: 564 ATPTFLQSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYY 616
P +L ++ +++ V+R ++HP + +W+ NE R +
Sbjct: 95 DDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRWIKSVDP 147
>d1bhga1 b.1.4.1 (A:226-328) beta-Glucuronidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 38.5 bits (89), Expect = 2e-04
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 85 SEVELWWPNGYGEQP--LYNLQITL----ASGVEMSTKSIKIGFRT 124
V LWWP E+P LY+L++ L + G ++ +G RT
Sbjct: 58 PGVSLWWPYLMHERPAYLYSLEVQLTAQTSLGPVSDFYTLPVGIRT 103
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId:
51453]}
Length = 344
Score = 40.0 bits (92), Expect = 6e-04
Identities = 32/290 (11%), Positives = 69/290 (23%), Gaps = 73/290 (25%)
Query: 145 FEVNKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGV------Y 198
F ++ Y G+N L ++ +ST + + + ++RVWG
Sbjct: 12 FNIDGKVGYFAGTNCYWCSFLTNHADVDSTFSHI----SSSGLKVVRVWGFNDVNTQPSP 67
Query: 199 MSDYFYEPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMTRYTDMARHESTIR 258
+F + + ++ L + A + L++
Sbjct: 68 GQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLI-------------------- 107
Query: 259 DLLVSTKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVR 318
+ + W ++ Y + R
Sbjct: 108 ----------IPFVNNWSDYGGINAY------------VNAFGGNATTWYTNTAAQTQYR 145
Query: 319 SEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQ 378
+ V R + I W NE I + + ++ V
Sbjct: 146 KYVQAVVSRYANSTAIFAWELGNEPRCNGCSTDVIVQ------------WATSVSQYVKS 193
Query: 379 YDPTRPYLTSSPTNGIESEKAKYALADNPYSNIYGDTHNYDYYQNLWDPS 428
D + L+ + Y D+ +N+ S
Sbjct: 194 LDSNHL---------VTLGDEGLGLSTGDGAYPYTYGEGTDFAKNVQIKS 234
Score = 36.9 bits (84), Expect = 0.006
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 33 FEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGSEVELWWP 92
F ++ Y G+N L ++ +ST + + + ++RVWG P
Sbjct: 12 FNIDGKVGYFAGTNCYWCSFLTNHADVDSTFSHI----SSSGLKVVRVWGFNDVNTQPSP 67
Query: 93 NGYGEQPLYN 102
Q L
Sbjct: 68 GQIWFQKLSA 77
>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon
esculentum) [TaxId: 4081]}
Length = 370
Score = 39.7 bits (91), Expect = 8e-04
Identities = 11/72 (15%), Positives = 21/72 (29%)
Query: 33 FEVNKVPIYSKGSNLIPVDVLPERSNNESTIRDLLVSTKEANMNMLRVWGGGSEVELWWP 92
F +N +Y G N + + + + + + MN+ R W
Sbjct: 11 FALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSRPLQ 70
Query: 93 NGYGEQPLYNLQ 104
+ G Q
Sbjct: 71 SAPGVYNEQMFQ 82
Score = 39.7 bits (91), Expect = 0.001
Identities = 44/398 (11%), Positives = 92/398 (23%), Gaps = 73/398 (18%)
Query: 145 FEVNKVPIYSKGSNLIPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDYFY 204
F +N +Y G N + + + + + + MN+ R W S
Sbjct: 11 FALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAF----SHGGS 66
Query: 205 EPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVST 264
P+ P N + V ++ + + + ++
Sbjct: 67 RPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVE--------- 117
Query: 265 KEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQT 324
G ++ + + +++ + T T +
Sbjct: 118 --------WAVQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAY-------- 161
Query: 325 VRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRP 384
++ N + + + + D
Sbjct: 162 ---KDDPTILSWELINEPRCPSDLSGKTFQNWVLEMAG------------YLKSIDSNHL 206
Query: 385 YLTSSPTNGIESEKAKYALADNPYSNIYGDTHNYDYYQNLWDPSTAPKSRFCSEFGIQSL 444
G+E NP S I+G + D + +
Sbjct: 207 L-----EIGLEGFYGNDMRQYNPNSYIFGTNFISNNQVQGID---------FTTIHMYPN 252
Query: 445 PQLSTFQKVATEADLASWRTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEYFAYLSQI 504
L + A + + W D + L I E + G + Y +I
Sbjct: 253 QWLPGLTQEAQDKWASQWIQVHIDDSKMLKKPLLIAEFGKSTKTP-GYTVAKRDNYFEKI 311
Query: 505 YQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLND 542
Y I + G G L+WQ+
Sbjct: 312 YGT-----IFNCAKSG---------GPCGGGLFWQVLG 335
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId:
39650]}
Length = 410
Score = 39.4 bits (90), Expect = 0.001
Identities = 44/401 (10%), Positives = 88/401 (21%), Gaps = 55/401 (13%)
Query: 145 FEVNKVPIYSKGSNLIPVDILPERSN--NESTIRDLLVSTKEANMNMLRVWGGGVYMSDY 202
FE+ P G N+ L + + + L + K +N LRV
Sbjct: 11 FELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVS------ 64
Query: 203 FYEPVDILPERSNNESTIRDLLVSTKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLV 262
+ N + + + +L+ Y+ +
Sbjct: 65 --------EKSEINSAVKPAVTNGFGNYDETLLQGLD---YLLVELAKRDMTVVLYFNNF 113
Query: 263 STKEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFL-QSVRSEI 321
M W G + D E + + L + +
Sbjct: 114 WQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQEYRKTLEKIITRVN 173
Query: 322 SQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDP 381
S + I W NE E ++Y D
Sbjct: 174 SINGKAYVDDATIMSWQLANEPRPGN--SQTTAEEKQIYIDWVHAAAAYI-----KTLDA 226
Query: 382 TRPYLTSSPTNGIESEKAKYALADNPYSNIYGDTHNYDYYQNLWDPSTAPKSRFCSEFGI 441
+ S + + + +I D Y + W K
Sbjct: 227 HHLVSSGSEGEMGSVNDMQVFIDAHATPDI--DYLTYHMWIRNWSWFDKTKPAETWPSAW 284
Query: 442 QSLPQLSTFQKVATEADLASWRTPFFDSRQHLAGGTGILESSVGHQFEIGNLTLEYFAYL 501
+ R ++Q ++ G ++G+ ++
Sbjct: 285 EKAQN--------------YMRAHIDVAKQL---NKPLVLEEFGLDRDMGSYAMDSTTEY 327
Query: 502 SQIYQAGAIKTITEQMRRDKGVLREDGSGHNMGALYWQLND 542
Y G + + + + + G W N
Sbjct: 328 RDNYFRGVFELMLASLEQGEPS---------AGYNIWAWNG 359
Score = 35.9 bits (81), Expect = 0.014
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 33 FEVNKVPIYSKGSNLIPVDVLPERSN--NESTIRDLLVSTKEANMNMLRVWGGGSEVELW 90
FE+ P G N+ L + + + L + K +N LRV + E+
Sbjct: 11 FELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEIN 70
Query: 91 WPNGYGEQPLYNL 103
+
Sbjct: 71 SAVKPAVTNGFGN 83
>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas
haloplanktis [TaxId: 228]}
Length = 293
Score = 36.8 bits (84), Expect = 0.006
Identities = 21/190 (11%), Positives = 46/190 (24%), Gaps = 28/190 (14%)
Query: 265 KEANMNMLRVWGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTF----------L 314
E N ++R G + E + ++ A
Sbjct: 49 TEFNATLIRAAIGHGTSTGGSLNFDWEGNMSRLDTVVNAAIAEDMYVIIDFHSHEAHTDQ 108
Query: 315 QSVRSEISQTVRRVQHHPCIAVWAGNNEMEGATIQKWYIRENPELYYKEYAELYVNTLKP 374
+ + + + ++ NE + Y T+
Sbjct: 109 ATAVRFFEDVATKYGQYDNV-IYEIYNEPLQISWVNDIKP-------------YAETVID 154
Query: 375 IVLQYDPTRPYLTSSPT-NGIESEKAKYALADNPY---SNIYGDTHNYDYYQNLWDPSTA 430
+ DP + +PT + ++ + + Y TH Y
Sbjct: 155 KIRAIDPDNLIVVGTPTWSQDVDVASQNPIDRANIAYTLHFYAGTHGQSYRNKAQTALDN 214
Query: 431 PKSRFCSEFG 440
+ F +E+G
Sbjct: 215 GIALFATEWG 224
>d2alea1 d.79.3.1 (A:1-126) Small nuclear
ribonucleoprotein-associated protein 1, Snu13p
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 126
Score = 29.1 bits (65), Expect = 0.71
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 107 LASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSN 158
L G +TK++ G ++ +P + E VP S
Sbjct: 33 LKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSR 84
>d2bl8a1 a.29.8.2 (A:4-103) Enterocine A immunity protein, EntA-Im
{Enterococcus faecium [TaxId: 1352]}
Length = 100
Score = 27.5 bits (61), Expect = 1.6
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 169 SNNESTIRDLLVSTKEANMNMLRVWGGGVYMSDY 202
E IR+L + A +N G+Y +DY
Sbjct: 68 EYQEELIRNLSEIGRTAGIN-------GLYRADY 94
Score = 26.7 bits (59), Expect = 3.6
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 254 ESTIRDLLVSTKEANMNMLRVWGGGVYMSDY 284
E IR+L + A +N G+Y +DY
Sbjct: 71 EELIRNLSEIGRTAGIN-------GLYRADY 94
Score = 25.9 bits (57), Expect = 5.4
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 214 SNNESTIRDLLVSTKEANMNMLRVWGGGVYMTRYTD 249
E IR+L + A +N G+Y Y D
Sbjct: 68 EYQEELIRNLSEIGRTAGIN-------GLYRADYGD 96
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 28.0 bits (62), Expect = 1.9
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 107 LASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSN 158
L G +TK++ G ++ +P + E VP S
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSK 83
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia
heterothallica, aka Myceliophthora thermophila [TaxId:
78579]}
Length = 332
Score = 28.7 bits (63), Expect = 2.6
Identities = 22/216 (10%), Positives = 48/216 (22%), Gaps = 18/216 (8%)
Query: 215 NNESTIRDLLVSTKEANMNMLRVWGGGVYMTRYTDMARHESTIRDLLVSTKEANMNMLRV 274
N + L +N +R V++ + + K A L V
Sbjct: 24 NTNGNAQPLENILAANGVNTVRQ---RVWVNPADG----NYNLDYNIAIAKRAKAAGLGV 76
Query: 275 WGGGVYMSDYFYETCDELGILIWQDMMFACNNYPATPTFLQSVRSEISQTVRRVQHHPCI 334
+ Y + + D+ + + ++Q+
Sbjct: 77 YIDFHYSDTWADPAHQTMPAGWPSDIDNLS----------WKLYNYTLDAANKLQNAGIQ 126
Query: 335 AVWAG-NNEMEGATIQKWYIRENPELYYKEYAELYVNTLKPIVLQYDPTRPYLTSSPTNG 393
NE+ + EN + + +L + G
Sbjct: 127 PTIVSIGNEIRAGLLWPTGRTENWANIARLLHSAAWGIKDSSLSPKPKIMIHLDNGWDWG 186
Query: 394 IESEKAKYALADNPYSNIYGDTHNYDYYQNLWDPST 429
++ L D +Y +T
Sbjct: 187 TQNWWYTNVLKQGTLELSDFDMMGVSFYPFYSSSAT 222
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium
parvum [TaxId: 5807]}
Length = 115
Score = 26.8 bits (59), Expect = 4.2
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 107 LASGVEMSTKSIKIGFRTVELIQDHVDPNHLEKGRYFYFEVNKVPIYSKGSN 158
L G +TK++ G + L+ +P + E P S
Sbjct: 25 LRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSK 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0451 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,583,697
Number of extensions: 122093
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 48
Length of query: 669
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 578
Effective length of database: 1,158,166
Effective search space: 669419948
Effective search space used: 669419948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.0 bits)