BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4380
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 30.8 bits (68), Expect = 0.24, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 93 GFYHLFSGFFPVAINFLRRIPVLGMMLNLPGIKGILDRLAGDTHRTM 139
GF + +SG F +AIN RR+P+ +G++D+ G M
Sbjct: 110 GFIYTYSGLFCIAINPYRRLPIY--------TQGLVDKYRGKRRAEM 148
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKJ|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKK|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKK|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKL|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
pdb|1WKL|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
Length = 137
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 90 ELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPGIKGILDRLAGDTH 136
E + H FFP + F+ PV+ M+L PG+ + ++ G TH
Sbjct: 46 ERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATH 92
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 93 GFYHLFSGFFPVAINFLRRIPV 114
G + +SG F +A+N RR+P+
Sbjct: 110 GLIYTYSGLFCIAVNPYRRLPI 131
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 93 GFYHLFSGFFPVAINFLRRIPV 114
G + +SG F +A+N RR+P+
Sbjct: 110 GLIYTYSGLFCIAVNPYRRLPI 131
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 93 GFYHLFSGFFPVAINFLRRIPV 114
G + +SG F +A+N RR+P+
Sbjct: 110 GLIYTYSGLFCIAVNPYRRLPI 131
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 93 GFYHLFSGFFPVAINFLRRIPV 114
G + +SG F +A+N RR+P+
Sbjct: 106 GLIYTYSGLFCIAVNPYRRLPI 127
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 93 GFYHLFSGFFPVAINFLRRIPV 114
G + +SG F +A+N RR+P+
Sbjct: 105 GLIYTYSGLFCIAVNPYRRLPI 126
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 93 GFYHLFSGFFPVAINFLRRIPV 114
G + +SG F +A+N RR+P+
Sbjct: 110 GLIYTYSGLFCIAVNPYRRLPI 131
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 93 GFYHLFSGFFPVAINFLRRIPV 114
G + +SG F +A+N RR+P+
Sbjct: 110 GLIYTYSGLFCIAVNPYRRLPI 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.339 0.158 0.511
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,047,815
Number of Sequences: 62578
Number of extensions: 160982
Number of successful extensions: 414
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 11
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 46 (22.3 bits)