BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4380
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CR60|GOT1B_MOUSE Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1
Length = 138
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/136 (64%), Positives = 107/136 (78%)
Query: 1 MFEITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFF 60
M +TD QKIG+GL GFG+ FLF G+ L FDK LLAIGNVLF++GLA VIG ERTFRFFF
Sbjct: 1 MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFF 60
Query: 61 QRHKVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLN 120
QRHKVK + F GG+FVVL GWPLIGM E+YGF+ LF GFFPV + F+RR+PVLG +LN
Sbjct: 61 QRHKVKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLN 120
Query: 121 LPGIKGILDRLAGDTH 136
LPGI+ +D++ +
Sbjct: 121 LPGIRSFVDKVGESNN 136
>sp|Q9Y3E0|GOT1B_HUMAN Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1
Length = 138
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/136 (63%), Positives = 107/136 (78%)
Query: 1 MFEITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFF 60
M +TD QKIG+GL GFG+ FLF G+ L FDK LLAIGNVLF++GLA VIG ERTFRFFF
Sbjct: 1 MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFF 60
Query: 61 QRHKVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLN 120
Q+HK+K + F GG+FVVL GWPLIGM E+YGF+ LF GFFPV + F+RR+PVLG +LN
Sbjct: 61 QKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLN 120
Query: 121 LPGIKGILDRLAGDTH 136
LPGI+ +D++ +
Sbjct: 121 LPGIRSFVDKVGESNN 136
>sp|Q2YDE3|GOT1B_BOVIN Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1
Length = 138
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/136 (63%), Positives = 107/136 (78%)
Query: 1 MFEITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFF 60
M +TD QKIG+GL GFG+ FLF G+ L FDK LLAIGNVLF++GLA VIG ERTFRFFF
Sbjct: 1 MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFF 60
Query: 61 QRHKVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLN 120
Q+HK+K + F GG+FVVL GWPLIGM E+YGF+ LF GFFPV + F+RR+PVLG +LN
Sbjct: 61 QKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLN 120
Query: 121 LPGIKGILDRLAGDTH 136
LPGI+ +D++ +
Sbjct: 121 LPGIRSFVDKVGESNN 136
>sp|Q20263|GOT1_CAEEL Probable Golgi transport protein 1 OS=Caenorhabditis elegans
GN=F41C3.4 PE=3 SV=2
Length = 141
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 94/135 (69%)
Query: 2 FEITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFFQ 61
FE++ ++IGVGL FG F+FLGV + D LLAIGN+LFI G+ +IG +RT FFF+
Sbjct: 4 FEVSTTKQIGVGLTTFGFFFIFLGVLMFLDSALLAIGNLLFIVGITFIIGVQRTLVFFFE 63
Query: 62 RHKVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLNL 121
K+KGS+ FFGGI VVLFG+PL GM E +GF LF GF P +N LR IP + + L
Sbjct: 64 FRKLKGSILFFGGILVVLFGYPLFGMIAECWGFIVLFGGFLPGIVNLLRSIPGISTITYL 123
Query: 122 PGIKGILDRLAGDTH 136
PGI+ +LDRLA ++
Sbjct: 124 PGIRQVLDRLAPESK 138
>sp|Q2NKV8|GOT1A_BOVIN Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1
Length = 132
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 90/136 (66%), Gaps = 6/136 (4%)
Query: 1 MFEITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFF 60
M IT+ QKIGVG GFGI F+ G+ L FD LLA GN+LF++GL+ +IG RTF FFF
Sbjct: 1 MISITEWQKIGVGTTGFGIFFILFGMLLYFDSVLLAFGNLLFLTGLSLIIGLRRTFSFFF 60
Query: 61 QRHKVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLN 120
QRHK KG+ F GG+ +VL WPL+GMC+E YGF+ LF GFFPVA F LG N
Sbjct: 61 QRHKFKGTSFFLGGVVIVLLRWPLLGMCLETYGFFSLFRGFFPVAFGF------LGSASN 114
Query: 121 LPGIKGILDRLAGDTH 136
+P + + RL G +
Sbjct: 115 IPFLSALFQRLQGTSS 130
>sp|Q9DCQ3|GOT1A_MOUSE Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1
Length = 133
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 89/137 (64%), Gaps = 6/137 (4%)
Query: 1 MFEITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFF 60
M IT+ QKIGVG+ GFG+ F+ G+ L FD LLA GN+LF++GL+ +IG RTF FFF
Sbjct: 1 MISITEWQKIGVGITGFGVFFILFGILLYFDSVLLAFGNLLFLTGLSLIIGLRRTFAFFF 60
Query: 61 QRHKVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLN 120
QRHK+KG+ F GG+ +VL WPL+GM +E YGF LF GFFPV F LG N
Sbjct: 61 QRHKLKGTSFFLGGVAIVLLRWPLLGMLLEAYGFISLFKGFFPVVFGF------LGSAFN 114
Query: 121 LPGIKGILDRLAGDTHR 137
+P + + +L G +
Sbjct: 115 IPFLSTLFQKLQGSSSS 131
>sp|Q6ZVE7|GOT1A_HUMAN Vesicle transport protein GOT1A OS=Homo sapiens GN=GOLT1A PE=2 SV=1
Length = 132
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 90/136 (66%), Gaps = 6/136 (4%)
Query: 1 MFEITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFF 60
M IT+ QKIGVG+ GFGI F+ G L FD LLA GN+LF++GL+ +IG +TF FFF
Sbjct: 1 MISITEWQKIGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFF 60
Query: 61 QRHKVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLN 120
QRHK+KG+ GG+ +VL WPL+GM +E YGF+ LF GFFPVA F LG + N
Sbjct: 61 QRHKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGF------LGNVCN 114
Query: 121 LPGIKGILDRLAGDTH 136
+P + + RL G +
Sbjct: 115 IPFLGALFRRLQGTSS 130
>sp|Q54CL4|GOT1_DICDI Protein transport protein got1 homolog OS=Dictyostelium discoideum
GN=golt1 PE=3 SV=1
Length = 138
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 5 TDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFFQRHK 64
TD QKIG L+ G+ F FLGV L D+ LLA+GN+L +SG+ ++G ++T +FF Q+ K
Sbjct: 3 TDQQKIGAMLSAMGLFFGFLGVLLFLDRNLLALGNLLLVSGIVLILGLQKTTKFFAQKKK 62
Query: 65 VKGSLCFFGGIFVVLFG-WPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPG 123
+KG++ FF GI V+L W +GM IE++GF +LF FP+ I+ LR++P++G +LN P
Sbjct: 63 IKGTILFFFGIVVLLVTRWTFVGMVIEIFGFVNLFGDAFPIVISILRKLPIIGNILNHPL 122
Query: 124 IKGILDR 130
+ +L +
Sbjct: 123 VNRLLQK 129
>sp|Q03554|GOT1_YEAST Protein transport protein GOT1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GOT1 PE=1 SV=1
Length = 138
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 81/130 (62%)
Query: 4 ITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFFQRH 63
+T+ QK GV G F G+F FD+ LLA+GN+LF+ G+ +IG ++T+ FF + +
Sbjct: 3 LTEAQKFGVAFTFGGFLFFLFGIFTFFDRALLALGNILFLIGVFLIIGSQKTYIFFTRPN 62
Query: 64 KVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPG 123
K +GSL F G F++L W +G IE G LF FF V + FLR +P++G +L+ P
Sbjct: 63 KRRGSLFFLVGAFLILLKWTFLGFIIESLGIIGLFGDFFGVIVQFLRSMPIIGPILSHPA 122
Query: 124 IKGILDRLAG 133
I I+D+LAG
Sbjct: 123 IAPIVDKLAG 132
>sp|Q9USJ2|GOT1_SCHPO Protein transport protein got1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=got1 PE=3 SV=1
Length = 129
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 79/117 (67%)
Query: 4 ITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFFQRH 63
++D+QKIGVG G F+ +G+F+ FD LL++GN+L + G + GF ++ FF ++
Sbjct: 3 LSDLQKIGVGTTALGFLFMIMGIFMFFDGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKD 62
Query: 64 KVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLN 120
++ GS+ FF G+ + LF +P+IG +E GF++LF F+P+ I+FLR +P +G ++
Sbjct: 63 RMLGSISFFSGLLLTLFHFPIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIGPYID 119
>sp|Q9UTD6|YID3_SCHPO Uncharacterized mitochondrial carrier C227.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC227.03c PE=3 SV=1
Length = 371
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 44 SGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYHLF-SGFF 102
+G AC + TF F + +K +G F+ G+F LFG +G+ LY ++ F FF
Sbjct: 222 TGPACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHVGIQFPLYEYFKSFLDDFF 281
Query: 103 PVAINF-------LRRIPVLGMMLNLPGIKGILDRLAGDTHRTMV 140
NF L +I + ++ L L TH +
Sbjct: 282 GKKSNFHIVLAATLSKIAASTVTYPHEVLRTRLQSLDAPTHNSAT 326
>sp|Q5SLV5|NDK_THET8 Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=ndk PE=1 SV=1
Length = 137
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 90 ELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPGIKGILDRLAGDTH 136
E + H FFP + F+ PV+ M+L PG+ + ++ G TH
Sbjct: 46 ERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATH 92
>sp|Q72GQ0|NDK_THET2 Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB27
/ ATCC BAA-163 / DSM 7039) GN=ndk PE=3 SV=1
Length = 137
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 90 ELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPGIKGILDRLAGDTH 136
E + H FFP + F+ PV+ M+L PG+ + ++ G TH
Sbjct: 46 ERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATH 92
>sp|Q8BWY7|S39AB_MOUSE Zinc transporter ZIP11 OS=Mus musculus GN=Slc39a11 PE=2 SV=1
Length = 342
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 61 QRHKVKGSLCFFGGIFVVLFGWPLIGMCIEL---YGFYHLFSGFFPVAINF 108
QR + GSL F G+ + W L+ +E+ G + F+ FFPVA+ F
Sbjct: 36 QRRILDGSLGFAAGVMLAASYWSLLAPAVEMATSSGGFGAFA-FFPVAVGF 85
>sp|Q8N1S5|S39AB_HUMAN Zinc transporter ZIP11 OS=Homo sapiens GN=SLC39A11 PE=2 SV=3
Length = 342
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 61 QRHKVKGSLCFFGGIFVVLFGWPLIGMCIEL---YGFYHLFSGFFPVAINF 108
QR + GSL F G+ + W L+ +E+ G + F+ FFPVA+ F
Sbjct: 36 QRRILDGSLGFAAGVMLAASYWSLLAPAVEMATSSGGFGAFA-FFPVAVGF 85
>sp|Q6P6S2|S39AB_RAT Zinc transporter ZIP11 OS=Rattus norvegicus GN=Slc39a11 PE=2 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 61 QRHKVKGSLCFFGGIFVVLFGWPLIGMCIEL---YGFYHLFSGFFPVAINF 108
QR + GSL F G+ + W L+ +E+ G + F+ FFPVA+ F
Sbjct: 36 QRRILDGSLGFAAGVMLAASYWSLLAPAVEMATSSGGFGAFA-FFPVAVGF 85
>sp|Q8KY01|HPPA_RHOPL K(+)-insensitive pyrophosphate-energized proton pump
OS=Rhodopseudomonas palustris GN=hppA PE=3 SV=1
Length = 725
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 47 ACVIGFERT------------FRFFFQRHKVKGSLCFFG-------GIFVVLFGWPLIGM 87
ACV+G T +F +H + S G G+ + WP+I +
Sbjct: 331 ACVVGLVLTAAMVWVTEYYTGTQFKPVQHVAQASTTGHGTNIIAGLGVSMKSTAWPVIFV 390
Query: 88 CIELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPGIKGILDRLAG 133
C+ +YG Y L +G + +AI + + G+++ I D G
Sbjct: 391 CLAIYGAYAL-AGLYGIAIAATSMLSMAGIVVARDAYGPITDNAGG 435
>sp|Q2YDD4|S39AB_BOVIN Zinc transporter ZIP11 OS=Bos taurus GN=SLC39A11 PE=2 SV=1
Length = 341
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 61 QRHKVKGSLCFFGGIFVVLFGWPLIGMCIELY----GFYHLFSGFFPVAINF 108
QR + GSL F G+ + W L+ +E+ GF L F PVAI F
Sbjct: 36 QRRILDGSLGFAAGVMLAASYWSLLAPAVEMAMSSGGFGSL--AFLPVAIGF 85
>sp|Q08760|RAX1_YEAST Bud site selection protein RAX1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RAX1 PE=1 SV=1
Length = 435
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 5 TDVQKIGVGLAGFGIAFL--FLGVFLLFDKGLLAIGNVLFISGLACVI 50
T + +IG GL GI F ++ +FL + + + + V F G C++
Sbjct: 293 TSISRIGFGLLWLGIGFWIGYVLIFLAYSRAIRVVTVVPFTLGCYCIV 340
>sp|P0AET7|HDED_SHIFL Protein HdeD OS=Shigella flexneri GN=hdeD PE=3 SV=1
Length = 190
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 14 LAGF--GIAFLFLGVFLLF--DKGLLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSL 69
L+GF +A+L +G F + + G+ AI FI+GL CV G R ++ QR L
Sbjct: 80 LSGFLVAVAYLLIGYFFIRAPELGIFAIAA--FIAGLFCVAGVIRLMSWYRQRSMKGSWL 137
Query: 70 CFFGGIFVVLFGWPLIG 86
G+ ++ W +G
Sbjct: 138 QLVIGVLDIVIAWIFLG 154
>sp|P0AET5|HDED_ECOLI Protein HdeD OS=Escherichia coli (strain K12) GN=hdeD PE=1 SV=1
Length = 190
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 14 LAGF--GIAFLFLGVFLLF--DKGLLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSL 69
L+GF +A+L +G F + + G+ AI FI+GL CV G R ++ QR L
Sbjct: 80 LSGFLVAVAYLLIGYFFIRAPELGIFAIAA--FIAGLFCVAGVIRLMSWYRQRSMKGSWL 137
Query: 70 CFFGGIFVVLFGWPLIG 86
G+ ++ W +G
Sbjct: 138 QLVIGVLDIVIAWIFLG 154
>sp|P0AET6|HDED_ECO57 Protein HdeD OS=Escherichia coli O157:H7 GN=hdeD PE=3 SV=1
Length = 190
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 14 LAGF--GIAFLFLGVFLLF--DKGLLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSL 69
L+GF +A+L +G F + + G+ AI FI+GL CV G R ++ QR L
Sbjct: 80 LSGFLVAVAYLLIGYFFIRAPELGIFAIAA--FIAGLFCVAGVIRLMSWYRQRSMKGSWL 137
Query: 70 CFFGGIFVVLFGWPLIG 86
G+ ++ W +G
Sbjct: 138 QLVIGVLDIVIAWIFLG 154
>sp|Q8P5M6|HPPA_XANCP K(+)-insensitive pyrophosphate-energized proton pump OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=hppA PE=3 SV=1
Length = 675
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 83 PLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPGIKGILDRLAG 133
P+I +C ++G +H F G + +AI + + GM++ L I D G
Sbjct: 382 PVIAVCAAIWGAFH-FGGLYGIAIAATAMLSMAGMIVALDAYGPITDNAGG 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.339 0.158 0.511
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,187,792
Number of Sequences: 539616
Number of extensions: 2267116
Number of successful extensions: 7503
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7478
Number of HSP's gapped (non-prelim): 35
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)