Query psy4380
Match_columns 140
No_of_seqs 106 out of 210
Neff 4.1
Searched_HMMs 46136
Date Sat Aug 17 00:04:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1743|consensus 100.0 3.6E-54 7.7E-59 329.4 10.1 135 2-136 1-135 (137)
2 COG5120 GOT1 Membrane protein 100.0 2.6E-40 5.6E-45 249.6 6.5 128 2-138 1-128 (129)
3 PF04178 Got1: Got1/Sft2-like 99.7 2.8E-17 6E-22 122.1 7.8 111 9-128 1-116 (118)
4 KOG2887|consensus 96.4 0.013 2.8E-07 47.5 6.8 93 13-105 51-159 (175)
5 PF03729 DUF308: Short repeat 79.6 10 0.00022 24.0 5.9 63 17-79 2-65 (72)
6 COG5102 SFT2 Membrane protein 73.5 3.5 7.7E-05 34.0 3.0 44 34-77 102-145 (201)
7 PF13129 DUF3953: Protein of u 72.2 2.7 5.9E-05 26.4 1.6 34 43-80 5-38 (42)
8 PF05915 DUF872: Eukaryotic pr 64.6 14 0.0003 27.8 4.3 40 10-49 46-94 (115)
9 PF04367 DUF502: Protein of un 62.6 10 0.00022 27.5 3.2 47 84-136 10-56 (108)
10 PRK10209 acid-resistance membr 57.5 93 0.002 24.5 8.6 97 12-108 22-127 (190)
11 PF09925 DUF2157: Predicted me 44.4 1.2E+02 0.0025 22.7 6.5 80 10-92 32-113 (145)
12 PF04156 IncA: IncA protein; 42.9 82 0.0018 24.1 5.6 19 32-50 43-61 (191)
13 PRK05771 V-type ATP synthase s 42.4 89 0.0019 29.0 6.7 118 8-133 443-578 (646)
14 COG2832 Uncharacterized protei 39.5 36 0.00078 26.2 3.1 58 82-139 6-71 (119)
15 COG2928 Uncharacterized conser 38.4 48 0.001 28.0 3.9 58 73-136 59-116 (222)
16 PF14145 YrhK: YrhK-like prote 37.9 80 0.0017 21.0 4.2 34 16-49 13-46 (59)
17 KOG2788|consensus 35.7 29 0.00064 31.5 2.4 45 67-118 261-305 (418)
18 COG3247 HdeD Uncharacterized c 32.4 2.8E+02 0.006 22.6 7.3 93 6-107 14-122 (185)
19 PF12390 Se-cys_synth_N: Selen 31.0 21 0.00045 21.7 0.5 24 109-132 1-24 (40)
20 PRK02935 hypothetical protein; 30.2 86 0.0019 23.9 3.8 44 4-50 9-52 (110)
21 PF06157 DUF973: Protein of un 24.2 4.6E+02 0.01 22.5 7.7 84 9-97 84-175 (285)
22 PF06570 DUF1129: Protein of u 23.5 3.7E+02 0.0081 21.2 6.9 23 10-32 83-105 (206)
23 PF15345 TMEM51: Transmembrane 22.7 60 0.0013 27.6 1.9 17 13-29 8-24 (233)
24 PF05915 DUF872: Eukaryotic pr 22.1 2.5E+02 0.0054 21.0 5.0 40 35-81 51-90 (115)
25 PF12158 DUF3592: Protein of u 22.1 1.9E+02 0.0041 20.5 4.3 19 13-31 3-21 (148)
26 PF07786 DUF1624: Protein of u 21.7 79 0.0017 24.7 2.3 63 35-100 47-116 (223)
No 1
>KOG1743|consensus
Probab=100.00 E-value=3.6e-54 Score=329.43 Aligned_cols=135 Identities=59% Similarity=1.213 Sum_probs=133.8
Q ss_pred cccccchhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcchhhhhhhhcccccceeehhhhhHHHHhhc
Q psy4380 2 FEITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFVVLFG 81 (140)
Q Consensus 2 ~~l~d~qkiGvgl~~~G~~f~~lGv~lffDr~LLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGt~~F~~Gi~lvl~~ 81 (140)
+|+||.||||+++|++|++|+++|++++|||+|||+||+||++|++++||.|||++||+||||+|||+.|+.|++++++|
T Consensus 1 ~~l~d~kkiGvg~TgfG~ff~l~Gii~ffD~aLLa~GNlLfi~GvsliiG~~~t~~FF~r~~k~kGti~F~~G~l~vl~~ 80 (137)
T KOG1743|consen 1 MELNDLKKIGVGLTGFGVFFFLFGIILFFDKALLAMGNLLFIIGVSLIIGFRKTMQFFFRRQKMKGTISFLGGVLLVLFG 80 (137)
T ss_pred CccchhhHhCeEEechhHHHHHHHHHHHHhhHHHHhcchHHHHhHHHhhcchhhhhhheehhhcceeeehhhhHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhccchHHHHHHhhhCcccccccCcchHHHHHHHhcCCCC
Q psy4380 82 WPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPGIKGILDRLAGDTH 136 (140)
Q Consensus 82 ~~~iG~i~E~~G~~~LFg~F~P~i~~fLr~~Pvig~il~~P~i~~~~~~l~~~~~ 136 (140)
||++||++|+||+++||++|+|++++++|++|++||++|+|++++.+||+++.|+
T Consensus 81 wPi~Gm~lE~~Gff~LF~gF~P~i~~flrs~p~lG~i~~~p~i~~~~drl~~~~~ 135 (137)
T KOG1743|consen 81 WPIFGMILETYGFFVLFRGFFPVIVVFLRSIPVLGWILNLPGIRSFLDRLAGPRV 135 (137)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCccccccccCccHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999987
No 2
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.6e-40 Score=249.62 Aligned_cols=128 Identities=37% Similarity=0.797 Sum_probs=124.8
Q ss_pred cccccchhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcchhhhhhhhcccccceeehhhhhHHHHhhc
Q psy4380 2 FEITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFVVLFG 81 (140)
Q Consensus 2 ~~l~d~qkiGvgl~~~G~~f~~lGv~lffDr~LLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGt~~F~~Gi~lvl~~ 81 (140)
||++|.||+|++.|+.|..|+..|+++||||++|++||++++.|+.+++|.||+..||.||+|++||+.|+.|.++++++
T Consensus 1 mwl~~lqk~GV~~t~~Gflffl~Gif~ffDraLl~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~l~~ 80 (129)
T COG5120 1 MWLMNLQKSGVVVTSIGFLFFLVGIFLFFDRALLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLYR 80 (129)
T ss_pred CchhhhhHcCeEEeehhHHHHHHHHHHHhhhHHHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhccchHHHHHHhhhCcccccccCcchHHHHHHHhcCCCCCc
Q psy4380 82 WPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPGIKGILDRLAGDTHRT 138 (140)
Q Consensus 82 ~~~iG~i~E~~G~~~LFg~F~P~i~~fLr~~Pvig~il~~P~i~~~~~~l~~~~~~~ 138 (140)
||++|+++|+.|+++||+||+|++.++||++|++| |+| ||+.+.+.+|
T Consensus 81 fp~~GF~~E~LG~f~Lf~df~p~i~~fLRt~p~ig-----p~i----drl~g~~~~P 128 (129)
T COG5120 81 FPMFGFLLETLGLFLLFRDFIPTIRTFLRTLPLIG-----PYI----DRLLGRLMRP 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhH----HhhhceecCC
Confidence 99999999999999999999999999999999999 776 8888888877
No 3
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=99.71 E-value=2.8e-17 Score=122.15 Aligned_cols=111 Identities=32% Similarity=0.678 Sum_probs=102.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhhHHhhcchhhhhhhhcccccceeehhhhhHHHHhhcchhH
Q psy4380 9 KIGVGLAGFGIAFLFLGVFLLFDK---GLLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFVVLFGWPLI 85 (140)
Q Consensus 9 kiGvgl~~~G~~f~~lGv~lffDr---~LLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGt~~F~~Gi~lvl~~~~~i 85 (140)
|+|+.+...|.++.++|++++.|| .+.++||+++++|..+++||+|.++++.+|+|+++|++|+.++.++++ .
T Consensus 1 ~~G~~~~~l~~~~~~~~~~~~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~----~ 76 (118)
T PF04178_consen 1 KIGIICFFLSLIFFFLGVLLFFPRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLY----F 76 (118)
T ss_pred CeehHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH----H
Confidence 789999999999999999999999 999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHhhccch-HHHHHHhhhC-cccccccCcchHHHHH
Q psy4380 86 GMCIELYGFYHLFSGFF-PVAINFLRRI-PVLGMMLNLPGIKGIL 128 (140)
Q Consensus 86 G~i~E~~G~~~LFg~F~-P~i~~fLr~~-Pvig~il~~P~i~~~~ 128 (140)
|+..|.|++.++|+.+. |..+.++.+. |. |+ |.++++.
T Consensus 77 ~~~~~~~~l~llf~~~q~~al~wy~~s~iP~-g~----~~~~~~~ 116 (118)
T PF04178_consen 77 AFILKSYGLTLLFSIFQFPALIWYLLSYIPF-GR----PGLKKFF 116 (118)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCCC-hH----HHHHHHh
Confidence 99999999999999988 9988888875 84 63 6666554
No 4
>KOG2887|consensus
Probab=96.41 E-value=0.013 Score=47.47 Aligned_cols=93 Identities=16% Similarity=0.325 Sum_probs=73.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHhhHHhhcchhhhhhhhcccccceeehhhhhHHHHhhc---
Q psy4380 13 GLAGFGIAFLFLGVFLLFDKG--------LLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFVVLFG--- 81 (140)
Q Consensus 13 gl~~~G~~f~~lGv~lffDr~--------LLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGt~~F~~Gi~lvl~~--- 81 (140)
.+.+.|+++.+++.++|.--. +-++||++++.+-..++||++=++--+.|+|+-.|+.|+.-.++-++=
T Consensus 51 ~cl~~gv~c~~l~~~lf~v~~~~~~kFal~~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~ 130 (175)
T KOG2887|consen 51 ICLAGGVLCFLLAMVLFPVLVVSPRKFALLYTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALW 130 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccceeehhHHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999998755 679999999999999999999999989999999999998887765531
Q ss_pred -----chhHHHHHHHHHHHHhhccchHHH
Q psy4380 82 -----WPLIGMCIELYGFYHLFSGFFPVA 105 (140)
Q Consensus 82 -----~~~iG~i~E~~G~~~LFg~F~P~i 105 (140)
.+++=-++|...+.+--=+++|-.
T Consensus 131 ~ks~iLtllf~ilq~laliwYslSyiP~g 159 (175)
T KOG2887|consen 131 LKSKILTLLFCILQVLALIWYSLSYIPFG 159 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 256666777777666554555543
No 5
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=79.64 E-value=10 Score=24.04 Aligned_cols=63 Identities=24% Similarity=0.423 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcchhhhhhhhccccccee-ehhhhhHHHHh
Q psy4380 17 FGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGS-LCFFGGIFVVL 79 (140)
Q Consensus 17 ~G~~f~~lGv~lffDr~LLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGt-~~F~~Gi~lvl 79 (140)
.|+....+|+.++.....-...=...+....+.-|..+-.+.+.||++.++. .....|+.-+.
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~ 65 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASLAALAIILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIV 65 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 3778888999888877665444445555566667888888888766543332 23344444443
No 6
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=73.49 E-value=3.5 Score=33.96 Aligned_cols=44 Identities=23% Similarity=0.505 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhHHhhcchhhhhhhhcccccceeehhhhhHHH
Q psy4380 34 LLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFV 77 (140)
Q Consensus 34 LLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGt~~F~~Gi~l 77 (140)
+-+|||+||+.+...++|+..-++--+.|||+.=|..|++-.++
T Consensus 102 lwTmgslLfvl~Fg~l~Gf~ayl~~Lts~erlp~s~~ff~t~l~ 145 (201)
T COG5102 102 LWTMGSLLFVLMFGFLLGFRAYLEGLTSKERLPHSSWFFGTTLL 145 (201)
T ss_pred ehhHHHHHHHHHHHHHHhHHHHHHhhhhhhccchhHHHHHHHHH
Confidence 34899999999999999999999988899999999888776554
No 7
>PF13129 DUF3953: Protein of unknown function (DUF3953)
Probab=72.24 E-value=2.7 Score=26.42 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=24.5
Q ss_pred HHhhHHhhcchhhhhhhhcccccceeehhhhhHHHHhh
Q psy4380 43 ISGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFVVLF 80 (140)
Q Consensus 43 l~Gl~l~iG~~kt~~FF~~~~k~kGt~~F~~Gi~lvl~ 80 (140)
+.-..+++|.+..- |++|..|..||..|++.++.
T Consensus 5 LG~m~~~~Gi~e~k----k~~k~~g~~~f~~~~f~~~V 38 (42)
T PF13129_consen 5 LGLMMFIIGIEEIK----KERKSSGILSFLVGAFILFV 38 (42)
T ss_pred HHHHHHHHHHHHHH----hcccceehHHHHHHHHheEE
Confidence 33344566666543 78999999999999987654
No 8
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=64.61 E-value=14 Score=27.79 Aligned_cols=40 Identities=33% Similarity=0.639 Sum_probs=25.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHhhHHh
Q psy4380 10 IGVGLAGFGIAFLFLGVFLLFDK---------GLLAIGNVLFISGLACV 49 (140)
Q Consensus 10 iGvgl~~~G~~f~~lGv~lffDr---------~LLalGNiLfl~Gl~l~ 49 (140)
.++.|+.+|..++..|.+++.++ +++.+|=+.|+=|..-+
T Consensus 46 la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~ 94 (115)
T PF05915_consen 46 LAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHT 94 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHH
Confidence 45666777777777777777665 56666666666665443
No 9
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=62.63 E-value=10 Score=27.54 Aligned_cols=47 Identities=26% Similarity=0.423 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhhccchHHHHHHhhhCcccccccCcchHHHHHHHhcCCCC
Q psy4380 84 LIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPGIKGILDRLAGDTH 136 (140)
Q Consensus 84 ~iG~i~E~~G~~~LFg~F~P~i~~fLr~~Pvig~il~~P~i~~~~~~l~~~~~ 136 (140)
++|.+++.+=- ...+-..=..+.++|+++++ +..+|++.|.+.++++
T Consensus 10 ~iG~l~~~~~g----~~l~~~~e~ll~riP~v~~i--Y~~~k~~~~~~~~~~~ 56 (108)
T PF04367_consen 10 LIGLLARNYFG----KWLLNWLERLLQRIPLVKSI--YSSIKQLVESFSGDKK 56 (108)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHCCchHHH--HHHHHHHHHHHhhccc
Confidence 56777765422 23333455678999999999 7889999999987664
No 10
>PRK10209 acid-resistance membrane protein; Provisional
Probab=57.48 E-value=93 Score=24.50 Aligned_cols=97 Identities=11% Similarity=0.076 Sum_probs=55.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcchhhhhhhhccccccee--ehhhhhHHHHhh-----cchh
Q psy4380 12 VGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGS--LCFFGGIFVVLF-----GWPL 84 (140)
Q Consensus 12 vgl~~~G~~f~~lGv~lffDr~LLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGt--~~F~~Gi~lvl~-----~~~~ 84 (140)
..+...|+....+|++.++|...-...=...+....++-|.-+-...|..|++-+.. .....|+..++. .+|.
T Consensus 22 ~~~li~Gil~ivlGi~~l~~P~~~~~~~~~~~g~~ll~~Gi~~l~~~~~~~~~~~~~~~~~ll~Gil~ii~Gil~l~~P~ 101 (190)
T PRK10209 22 RAIQIIAVLLFIGGLLCLSFPFVSGDALSTVVGILLICSGIALIVGLFANRSHNFWPMLSGILLGVAYLVLGYFFIRNPE 101 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 346778999999999999998754433333333344445555555555544431111 123445554443 4677
Q ss_pred HHHHHH--HHHHHHhhccchHHHHHH
Q psy4380 85 IGMCIE--LYGFYHLFSGFFPVAINF 108 (140)
Q Consensus 85 iG~i~E--~~G~~~LFg~F~P~i~~f 108 (140)
.+...= ..|.+.+..+..-.+.++
T Consensus 102 ~~~~~l~~l~g~~~iv~Gi~~i~~a~ 127 (190)
T PRK10209 102 VGMFSLAAFIAGLFCVGGIIRLMSGY 127 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776443 356676777666655543
No 11
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=44.36 E-value=1.2e+02 Score=22.70 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=48.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcchhhhhhh--hcccccceeehhhhhHHHHhhcchhHHH
Q psy4380 10 IGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFF--FQRHKVKGSLCFFGGIFVVLFGWPLIGM 87 (140)
Q Consensus 10 iGvgl~~~G~~f~~lGv~lffDr~LLalGNiLfl~Gl~l~iG~~kt~~FF--~~~~k~kGt~~F~~Gi~lvl~~~~~iG~ 87 (140)
.-..+..+|..+..+|++.|+-..-=.++...=+......+-..-...+. .|+++.-+..+...+.+++-. .+++
T Consensus 32 ~~~~l~~lGall~~~gii~fvA~nW~~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ga---~ial 108 (145)
T PF09925_consen 32 LARILLYLGALLLGLGIILFVAANWDDIPRLAKLGLLLALLLLSYVGGFWLWRRRSPRLAEALLLLGAVLFGA---LIAL 108 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH---HHHH
Confidence 67788999999999999999988777666653222222222112122222 256666666666666666553 4445
Q ss_pred HHHHH
Q psy4380 88 CIELY 92 (140)
Q Consensus 88 i~E~~ 92 (140)
+-|+|
T Consensus 109 igQ~y 113 (145)
T PF09925_consen 109 IGQIY 113 (145)
T ss_pred HHhHh
Confidence 55555
No 12
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.91 E-value=82 Score=24.14 Aligned_cols=19 Identities=47% Similarity=0.824 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHhhHHhh
Q psy4380 32 KGLLAIGNVLFISGLACVI 50 (140)
Q Consensus 32 r~LLalGNiLfl~Gl~l~i 50 (140)
-+++|+|=+++..|+.+..
T Consensus 43 ~~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 43 IALLALGVVLLSLGLLCLL 61 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556777777777776654
No 13
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=42.42 E-value=89 Score=29.00 Aligned_cols=118 Identities=22% Similarity=0.337 Sum_probs=64.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH-----h-----hHHHHHHHHHHHHhhHHhhcchhhhhhhhccc---ccceeehhhhh
Q psy4380 8 QKIGVGLAGFGIAFLFLGVFLLF-----D-----KGLLAIGNVLFISGLACVIGFERTFRFFFQRH---KVKGSLCFFGG 74 (140)
Q Consensus 8 qkiGvgl~~~G~~f~~lGv~lff-----D-----r~LLalGNiLfl~Gl~l~iG~~kt~~FF~~~~---k~kGt~~F~~G 74 (140)
..+=..-..+|++-+++|.++=. + .-+=.+|.++++.|+.+.....-. ..... ..-|-.....|
T Consensus 443 ~~~l~lsl~iGvi~i~~g~~l~~~~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g 519 (646)
T PRK05771 443 MTILIISLLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGGFG---LVVGLGPLGLIGKYLIIGG 519 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhccchHHHHHHHHHHHHH
Confidence 33334445667777777766511 1 111137888888888776521100 01110 01233455556
Q ss_pred HHHHhhcc-----hhHHHHHHHHHHHHhhccchHHHHHHhhhCcccccccCcchHHHHHHHhcC
Q psy4380 75 IFVVLFGW-----PLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPGIKGILDRLAG 133 (140)
Q Consensus 75 i~lvl~~~-----~~iG~i~E~~G~~~LFg~F~P~i~~fLr~~Pvig~il~~P~i~~~~~~l~~ 133 (140)
+++++.+- ...+.+. .++.+...+ ++-.++||+|-.=+ -|++-.+..+++.+++
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~d~lSY~RL~Al---gLa~~~ia~~~n~la~ 578 (646)
T PRK05771 520 VVLIILGEGIDGKSLGGALG-GLGLYEITG-YLGDVLSYARLMAL---GLAGAGIAMAFNLMAG 578 (646)
T ss_pred HHHHHHhcchhccccchhhh-hhhHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 66555321 1123333 566677766 78889999887654 3667777777777653
No 14
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.51 E-value=36 Score=26.19 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHHHHhhccchHH-------HHHHhhhCccc-ccccCcchHHHHHHHhcCCCCCcC
Q psy4380 82 WPLIGMCIELYGFYHLFSGFFPV-------AINFLRRIPVL-GMMLNLPGIKGILDRLAGDTHRTM 139 (140)
Q Consensus 82 ~~~iG~i~E~~G~~~LFg~F~P~-------i~~fLr~~Pvi-g~il~~P~i~~~~~~l~~~~~~~~ 139 (140)
|-.+|++.-..|+...|=.-+|+ +.-|.|+.|-. .|++++|+..+.++..++.+..|+
T Consensus 6 ~i~iGfl~l~LGIiGifLPlLPTTPFlLLaa~cFaRsSpRf~~WLl~~~~fg~~v~~~~e~~ai~~ 71 (119)
T COG2832 6 YIILGFLSLALGIIGIFLPLLPTTPFLLLAAACFARSSPRFHAWLLRHKYFGPYVRDWREGGAIPR 71 (119)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHcCCcHHHHHHHcCchhhHHHHHHHHcCCCCh
Confidence 45678888889999888888886 67788999944 678899999999988887776653
No 15
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=38.44 E-value=48 Score=27.97 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=36.6
Q ss_pred hhHHHHhhcchhHHHHHHHHHHHHhhccchHHHHHHhhhCcccccccCcchHHHHHHHhcCCCC
Q psy4380 73 GGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMMLNLPGIKGILDRLAGDTH 136 (140)
Q Consensus 73 ~Gi~lvl~~~~~iG~i~E~~G~~~LFg~F~P~i~~fLr~~Pvig~il~~P~i~~~~~~l~~~~~ 136 (140)
+|..+.+.-..++|++... ..++.-+-..=+.|+|+|++++| +--+||+++.+..++.
T Consensus 59 lg~il~iili~l~G~l~~~----~ig~~l~~~~d~~L~RiPlv~~I--Y~s~kqi~etll~~~~ 116 (222)
T COG2928 59 LGVILAIILIFLLGFLARN----MIGRSLLSLGDSLLRRIPLVKSI--YKSAKQVVETLLSDQS 116 (222)
T ss_pred HHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHccCccHHHH--HHHHHHHHHHHHhcCC
Confidence 3444444444466666554 23333344455779999999998 5568899998876553
No 16
>PF14145 YrhK: YrhK-like protein
Probab=37.95 E-value=80 Score=20.98 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHh
Q psy4380 16 GFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACV 49 (140)
Q Consensus 16 ~~G~~f~~lGv~lffDr~LLalGNiLfl~Gl~l~ 49 (140)
-.|...+..|-++|+-+..-..|..+|++|=.+.
T Consensus 13 ~~~~~~FliGSilfl~~~~~~~g~wlFiiGS~~f 46 (59)
T PF14145_consen 13 FIGGLLFLIGSILFLPESLYTAGTWLFIIGSILF 46 (59)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 3455555566666666677778888888775443
No 17
>KOG2788|consensus
Probab=35.72 E-value=29 Score=31.51 Aligned_cols=45 Identities=31% Similarity=0.731 Sum_probs=28.5
Q ss_pred eeehhhhhHHHHhhcchhHHHHHHHHHHHHhhccchHHHHHHhhhCcccccc
Q psy4380 67 GSLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLGMM 118 (140)
Q Consensus 67 Gt~~F~~Gi~lvl~~~~~iG~i~E~~G~~~LFg~F~P~i~~fLr~~Pvig~i 118 (140)
-|-|++.|..+-..+ +.|-.-|+ ..|| |+|.+++|+.++|=+=.+
T Consensus 261 DTfcyfaGMt~AVVg--ILGHFSKT---llLF--FiPQI~NFlyS~PQLfhl 305 (418)
T KOG2788|consen 261 DTFCYFAGMTFAVVG--ILGHFSKT---LLLF--FIPQILNFLYSLPQLFHL 305 (418)
T ss_pred cceeeeccchhhhhH--HhhhhHHH---HHHH--HHHHHHHHHHhhHHHcCc
Confidence 466888887654432 23333333 3344 899999999999965444
No 18
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=32.40 E-value=2.8e+02 Score=22.59 Aligned_cols=93 Identities=24% Similarity=0.382 Sum_probs=54.3
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhhHHH------HHHHHHHHHhhHHhhcchhhhhhhhccc---ccceeehhhhhHH
Q psy4380 6 DVQKIGVGLAGFGIAFLFLGVFLLFDKGLL------AIGNVLFISGLACVIGFERTFRFFFQRH---KVKGSLCFFGGIF 76 (140)
Q Consensus 6 d~qkiGvgl~~~G~~f~~lGv~lffDr~LL------alGNiLfl~Gl~l~iG~~kt~~FF~~~~---k~kGt~~F~~Gi~ 76 (140)
++||.=-.....|+....+|++.++|.+.= ..|=.+.+.|+..++ .-|..|+ +++. ++-|++
T Consensus 14 ~l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG~~lli~Gi~~ii------~af~~r~~~~~W~l---ll~Gil 84 (185)
T COG3247 14 MLKKPWWWVLLLGVLLIILGLLALFNPAISTVALVYVVGILLLISGIIEII------SAFGNRSDNSFWPL---LLSGIL 84 (185)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcccccchHH---HHHHHH
Confidence 334444556778999999999999987753 456666666666655 3444444 2333 344444
Q ss_pred HHh-----hcchhHHHHHHHH--HHHHhhccchHHHHH
Q psy4380 77 VVL-----FGWPLIGMCIELY--GFYHLFSGFFPVAIN 107 (140)
Q Consensus 77 lvl-----~~~~~iG~i~E~~--G~~~LFg~F~P~i~~ 107 (140)
.++ ..+|..|....+| +.+.++++-.-.+.+
T Consensus 85 ~i~~gil~~~~~~~~~~~l~~lia~~~i~~GI~ri~~~ 122 (185)
T COG3247 85 SILLGILAGFNPGLGALVLTYLIAIWFIASGILRIVVA 122 (185)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3366666655543 455555555544444
No 19
>PF12390 Se-cys_synth_N: Selenocysteine synthase N terminal
Probab=31.05 E-value=21 Score=21.72 Aligned_cols=24 Identities=29% Similarity=0.696 Sum_probs=20.3
Q ss_pred hhhCcccccccCcchHHHHHHHhc
Q psy4380 109 LRRIPVLGMMLNLPGIKGILDRLA 132 (140)
Q Consensus 109 Lr~~Pvig~il~~P~i~~~~~~l~ 132 (140)
+|++|=+..+|+.|.++...++..
T Consensus 1 lR~LPsVD~lL~~~~~~~l~~~~~ 24 (40)
T PF12390_consen 1 LRQLPSVDELLQEPEIQDLIERYG 24 (40)
T ss_pred CCCCchHHHHHhChhhHHHHHHcC
Confidence 578999999999999988887754
No 20
>PRK02935 hypothetical protein; Provisional
Probab=30.17 E-value=86 Score=23.90 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=28.0
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhh
Q psy4380 4 ITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVI 50 (140)
Q Consensus 4 l~d~qkiGvgl~~~G~~f~~lGv~lffDr~LLalGNiLfl~Gl~l~i 50 (140)
+|.-+..+..++..|+...-+|+++ |+--.+--+..++|+..++
T Consensus 9 INkiRt~aL~lvfiG~~vMy~Giff---~~~~~~m~ifm~~G~l~~l 52 (110)
T PRK02935 9 INKIRTFALSLVFIGFIVMYLGIFF---RESIIIMTIFMLLGFLAVI 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHH
Confidence 5667788999999999999999433 3322333344445555554
No 21
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=24.24 E-value=4.6e+02 Score=22.53 Aligned_cols=84 Identities=23% Similarity=0.363 Sum_probs=40.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHhhHHhhcchhhhhhhhcccccceeehhhhhHHHHhh
Q psy4380 9 KIGVGLAGFGIAFLFLGVFLLF--------DKGLLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFVVLF 80 (140)
Q Consensus 9 kiGvgl~~~G~~f~~lGv~lff--------Dr~LLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGt~~F~~Gi~lvl~ 80 (140)
++|.-+.-.|....++|.+... .-.+..+|=++.+.|-.++. ..++.=-++.+=+..=.+|++.++-
T Consensus 84 ~tG~~Lilig~il~iig~i~~i~~~~~~~~~~~l~~ig~il~~IG~ILlg-----i~~yrlG~~y~~~~ikvgGIL~ii~ 158 (285)
T PF06157_consen 84 KTGATLILIGYILIIIGAILAIISLFSILAGLILLLIGAILAFIGYILLG-----IGLYRLGSRYNNGLIKVGGILIIIP 158 (285)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhccCceehhhHHHHHH
Confidence 5555566667777666666432 12344445455555544442 2223222333333333445554443
Q ss_pred cchhHHHHHHHHHHHHh
Q psy4380 81 GWPLIGMCIELYGFYHL 97 (140)
Q Consensus 81 ~~~~iG~i~E~~G~~~L 97 (140)
--+++|+++...|+=..
T Consensus 159 ~l~~IG~iL~yigl~~~ 175 (285)
T PF06157_consen 159 ILSFIGYILMYIGLGEV 175 (285)
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 35666666666554443
No 22
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.53 E-value=3.7e+02 Score=21.21 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhh
Q psy4380 10 IGVGLAGFGIAFLFLGVFLLFDK 32 (140)
Q Consensus 10 iGvgl~~~G~~f~~lGv~lffDr 32 (140)
+-.+++.+|++..+-|++.+|++
T Consensus 83 ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 83 LDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788999999999999988
No 23
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.71 E-value=60 Score=27.60 Aligned_cols=17 Identities=29% Similarity=0.792 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHHHH
Q psy4380 13 GLAGFGIAFLFLGVFLL 29 (140)
Q Consensus 13 gl~~~G~~f~~lGv~lf 29 (140)
+||++|+-.+.|||+|-
T Consensus 8 AL~AiG~Gml~LGiiM~ 24 (233)
T PF15345_consen 8 ALTAIGVGMLALGIIMI 24 (233)
T ss_pred HHHHHhHhHHHHhhHhe
Confidence 68888888888888875
No 24
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=22.08 E-value=2.5e+02 Score=21.01 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhHHhhcchhhhhhhhcccccceeehhhhhHHHHhhc
Q psy4380 35 LAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFVVLFG 81 (140)
Q Consensus 35 LalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGt~~F~~Gi~lvl~~ 81 (140)
+..|=++.+.|..+..+.- ..++-++...+.+|++..+=|
T Consensus 51 li~G~~li~~g~l~~~~~i-------~~~~~~~~~llilG~L~fIPG 90 (115)
T PF05915_consen 51 LIFGTVLIIIGLLLFFGHI-------DGDRDRGWALLILGILCFIPG 90 (115)
T ss_pred HHHHHHHHHHHHHHHhccc-------CCCCcccchHHHHHHHHHhcc
Confidence 3444455555555555431 145566777888888776543
No 25
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=22.08 E-value=1.9e+02 Score=20.54 Aligned_cols=19 Identities=47% Similarity=0.761 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q psy4380 13 GLAGFGIAFLFLGVFLLFD 31 (140)
Q Consensus 13 gl~~~G~~f~~lGv~lffD 31 (140)
.+..+|+++.++|+.++..
T Consensus 3 ~~~~~~~i~l~~g~~~~~~ 21 (148)
T PF12158_consen 3 FLLLFGIIFLLIGLVLLIG 21 (148)
T ss_pred EhHHHHHHHHHHHHHHHHH
Confidence 3444455555555544433
No 26
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=21.67 E-value=79 Score=24.68 Aligned_cols=63 Identities=22% Similarity=0.418 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhHHhhcchhhhhhhhcccccceeehhhhhHHHHhhcch-------hHHHHHHHHHHHHhhcc
Q psy4380 35 LAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFVVLFGWP-------LIGMCIELYGFYHLFSG 100 (140)
Q Consensus 35 LalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGt~~F~~Gi~lvl~~~~-------~iG~i~E~~G~~~LFg~ 100 (140)
++..=.+|++|+++.+..+|..+- |+.-.|+...+..|..+....|. ..| +++.+|...+...
T Consensus 47 ~~ap~F~fl~G~s~~l~~~~~~~~--~~~~~R~~~l~~~g~~i~~~~~~~~~~~~i~~g-IL~~ig~~~ll~~ 116 (223)
T PF07786_consen 47 LAAPLFLFLAGISLALSTGRRRRR--RKFLKRGLKLFLLGLLINLLTFFFFPEGFIYFG-ILQFIGLSMLLAA 116 (223)
T ss_pred HHHHHHHHHHHHHHHHhcccccch--hHHHHHHHHHHHHHHHHHHHHHHhcCCceeehh-HHHHHHHHHHHHH
Confidence 455667889999998887777654 44445677788888887777652 112 6777777665433
Done!