Query psy4380
Match_columns 140
No_of_seqs 106 out of 210
Neff 4.1
Searched_HMMs 29240
Date Sat Aug 17 00:04:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 39.4 65 0.0022 24.4 5.8 68 32-105 75-150 (194)
2 1b35_D CRPV, protein (cricket 23.1 26 0.00089 22.7 0.8 16 108-123 27-42 (57)
3 2jp3_A FXYD domain-containing 16.9 1.1E+02 0.0039 20.4 3.0 29 35-64 22-50 (67)
4 2jo1_A Phospholemman; FXYD1, N 14.5 1.3E+02 0.0045 20.3 2.8 29 35-64 21-49 (72)
5 2zxe_G FXYD10, phospholemman-l 12.5 1.3E+02 0.0045 20.4 2.4 29 35-64 24-52 (74)
6 2ks1_B Epidermal growth factor 8.2 1.6E+02 0.0053 17.9 1.4 9 57-65 32-40 (44)
7 3gp2_B Calcium/calmodulin-depe 7.7 37 0.0013 18.3 -1.5 12 59-70 3-14 (22)
8 3tia_A Neuraminidase; 6-bladed 7.6 87 0.003 27.9 0.0 23 4-26 1-26 (469)
9 1z00_B DNA repair endonuclease 7.4 1.7E+02 0.0059 19.5 1.4 16 101-116 12-27 (84)
10 2l2t_A Receptor tyrosine-prote 7.0 1.9E+02 0.0066 17.6 1.4 9 57-65 31-39 (44)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=39.36 E-value=65 Score=24.35 Aligned_cols=68 Identities=6% Similarity=0.061 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHhhHHhhcchhhh-hhhhc------ccccceeehhhhhHHHHhhcch-hHHHHHHHHHHHHhhccchH
Q psy4380 32 KGLLAIGNVLFISGLACVIGFERTF-RFFFQ------RHKVKGSLCFFGGIFVVLFGWP-LIGMCIELYGFYHLFSGFFP 103 (140)
Q Consensus 32 r~LLalGNiLfl~Gl~l~iG~~kt~-~FF~~------~~k~kGt~~F~~Gi~lvl~~~~-~iG~i~E~~G~~~LFg~F~P 103 (140)
..+..+|.+++++|+.+-.--.++. ++|.. ++++-=|..|- ..|+| ..|.+++..|.....++..+
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~------~vRHP~Y~G~~l~~~g~~l~~~s~~~ 148 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYK------NIRHPMYAHLWLWVITQGIILSNWVV 148 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTT------TBSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcch------hccCccHHHHHHHHHHHHHHhccHHH
Confidence 4567899999999999988887776 45553 23333232221 34666 57888888888777777655
Q ss_pred HH
Q psy4380 104 VA 105 (140)
Q Consensus 104 ~i 105 (140)
.+
T Consensus 149 ~~ 150 (194)
T 4a2n_B 149 LI 150 (194)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=23.12 E-value=26 Score=22.70 Aligned_cols=16 Identities=44% Similarity=0.787 Sum_probs=13.4
Q ss_pred HhhhCcccccccCcch
Q psy4380 108 FLRRIPVLGMMLNLPG 123 (140)
Q Consensus 108 fLr~~Pvig~il~~P~ 123 (140)
-+..+|++|++++-|.
T Consensus 27 t~s~ipilgn~fs~pa 42 (57)
T 1b35_D 27 TLSHIPVLGNIFSTPA 42 (57)
T ss_dssp CTTCCCCSCCSSSSCT
T ss_pred hhhccccccccccchH
Confidence 3678999999999884
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=16.89 E-value=1.1e+02 Score=20.38 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhHHhhcchhhhhhhhcccc
Q psy4380 35 LAIGNVLFISGLACVIGFERTFRFFFQRHK 64 (140)
Q Consensus 35 LalGNiLfl~Gl~l~iG~~kt~~FF~~~~k 64 (140)
|...-+||+.|+.+++. +|.-+=|.|+++
T Consensus 22 LifA~vLfi~GI~iilS-~kcrCk~~qk~~ 50 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALS-GKCKCRRNHTPS 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHT-THHHHHHTCCTT
T ss_pred hhhHHHHHHHHHHHHHc-CcccccCCCCCC
Confidence 34556788888888774 345555665554
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=14.50 E-value=1.3e+02 Score=20.34 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhHHhhcchhhhhhhhcccc
Q psy4380 35 LAIGNVLFISGLACVIGFERTFRFFFQRHK 64 (140)
Q Consensus 35 LalGNiLfl~Gl~l~iG~~kt~~FF~~~~k 64 (140)
|.++-+||+.|+.+++. +|.-.=|.||++
T Consensus 21 LifA~vLfi~GI~iilS-~KckCk~~qk~r 49 (72)
T 2jo1_A 21 LVIAGILFILGILIVLS-RRCRCKFNQQQR 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHHc-CccccCCCCCCC
Confidence 34556778888877774 444445666554
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=12.47 E-value=1.3e+02 Score=20.44 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhHHhhcchhhhhhhhcccc
Q psy4380 35 LAIGNVLFISGLACVIGFERTFRFFFQRHK 64 (140)
Q Consensus 35 LalGNiLfl~Gl~l~iG~~kt~~FF~~~~k 64 (140)
|.+.-+||+.|+.+++. +|.-.=|.||++
T Consensus 24 LifA~vLfi~GI~iilS-~kcrCk~~qk~~ 52 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLA-GKCRCKFNQNKR 52 (74)
T ss_dssp HHHHHHHHHHHHHHHTT-TC----------
T ss_pred chhHHHHHHHHHHHHHc-CccccCCCCCCC
Confidence 34566788888888774 445445665554
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.23 E-value=1.6e+02 Score=17.90 Aligned_cols=9 Identities=22% Similarity=0.744 Sum_probs=4.4
Q ss_pred hhhhccccc
Q psy4380 57 RFFFQRHKV 65 (140)
Q Consensus 57 ~FF~~~~k~ 65 (140)
-||.||+|.
T Consensus 32 ~~~~RRr~~ 40 (44)
T 2ks1_B 32 GLFMRRRHI 40 (44)
T ss_dssp HHHHHTTTC
T ss_pred HHHhhhhHh
Confidence 345555543
No 7
>3gp2_B Calcium/calmodulin-dependent protein kinase type II delta chain; metal binding protein, ATP-binding, calmodulin- binding, nucleotide-binding; 1.46A {Homo sapiens}
Probab=7.74 E-value=37 Score=18.29 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=8.5
Q ss_pred hhcccccceeeh
Q psy4380 59 FFQRHKVKGSLC 70 (140)
Q Consensus 59 F~~~~k~kGt~~ 70 (140)
|..|+|+||.+.
T Consensus 3 FNaRRKLK~aIl 14 (22)
T 3gp2_B 3 FNARRKLKGAIL 14 (26)
T ss_pred ccHHHHHHHHHH
Confidence 556788888653
No 8
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding, glycosylation, ANT hydrolase-hydrolase inhibitor complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus} PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A* 1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A* 2aep_A* 2aeq_A* 4gzq_A* 4gzo_A* 4gzp_A* 4gzt_A* 4gzs_A* ...
Probab=7.61 E-value=87 Score=27.89 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred cccchhh---hhhhhhHHHHHHHHHH
Q psy4380 4 ITDVQKI---GVGLAGFGIAFLFLGV 26 (140)
Q Consensus 4 l~d~qki---Gvgl~~~G~~f~~lGv 26 (140)
||.+||| |..-+++|++-+++||
T Consensus 1 MNPNQKIITIGSVSLtLgtInLLLqI 26 (469)
T 3tia_A 1 MNPNQKIITIGSVSLTIATVCFLMQI 26 (469)
T ss_dssp --------------------------
T ss_pred CCCCceEEEEcchhHHHHHHHHHHhh
Confidence 6889996 5554554444444443
No 9
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=7.36 E-value=1.7e+02 Score=19.48 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=13.6
Q ss_pred chHHHHHHhhhCcccc
Q psy4380 101 FFPVAINFLRRIPVLG 116 (140)
Q Consensus 101 F~P~i~~fLr~~Pvig 116 (140)
+=|...+.|+.+|.||
T Consensus 12 ~N~~~~s~L~~IpGIG 27 (84)
T 1z00_B 12 YNPGPQDFLLKMPGVN 27 (84)
T ss_dssp SCHHHHHHHHTCSSCC
T ss_pred ccccHHHHHHhCCCCC
Confidence 4467889999999999
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.99 E-value=1.9e+02 Score=17.56 Aligned_cols=9 Identities=11% Similarity=0.545 Sum_probs=4.3
Q ss_pred hhhhccccc
Q psy4380 57 RFFFQRHKV 65 (140)
Q Consensus 57 ~FF~~~~k~ 65 (140)
-||.||+|.
T Consensus 31 ~~~~RRRr~ 39 (44)
T 2l2t_A 31 AVYVRRKSI 39 (44)
T ss_dssp HHHHHTTCS
T ss_pred HHHhhhhhh
Confidence 345555443
Done!