Query psy4380
Match_columns 140
No_of_seqs 106 out of 210
Neff 4.1
Searched_HMMs 13730
Date Sat Aug 17 00:04:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4380.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4380hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtua1 f.24.1.1 (A:14-551) Ba 15.2 43 0.0031 27.8 2.8 25 4-28 10-34 (538)
2 d1ppjd2 f.23.11.1 (D:196-241) 13.7 39 0.0028 19.4 1.5 16 3-18 2-17 (46)
3 d2bcqa2 a.60.12.1 (A:329-385) 12.4 23 0.0017 21.1 0.2 10 3-12 40-49 (57)
4 d1v54a_ f.24.1.1 (A:) Mitochon 12.1 59 0.0043 26.7 2.8 25 4-28 9-33 (514)
5 d2fmpa2 a.60.12.1 (A:92-148) D 11.7 25 0.0018 20.9 0.2 10 3-12 40-49 (57)
6 d1jmsa3 a.60.12.1 (A:243-302) 9.8 32 0.0024 20.6 0.2 10 3-12 42-51 (60)
7 d1lc0a1 c.2.1.3 (A:2-128,A:247 8.9 16 0.0012 24.3 -1.7 17 3-19 1-17 (172)
8 d1ffta_ f.24.1.1 (A:) Cytochro 8.1 1E+02 0.0073 24.9 2.7 23 6-28 2-24 (501)
9 d2otaa1 a.284.1.1 (A:7-68) Hyp 7.3 85 0.0062 19.1 1.5 11 31-41 25-35 (62)
10 d1m56c_ f.25.1.1 (C:) Bacteria 6.8 1.8E+02 0.013 20.9 3.4 20 14-33 19-38 (265)
No 1
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.17 E-value=43 Score=27.80 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=22.2
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHH
Q psy4380 4 ITDVQKIGVGLAGFGIAFLFLGVFL 28 (140)
Q Consensus 4 l~d~qkiGvgl~~~G~~f~~lGv~l 28 (140)
=+|-||||+.-...|+.+.++|..+
T Consensus 10 t~dHK~IG~~Yl~~~~~~~~~G~~~ 34 (538)
T d3dtua1 10 STNHKDIGVLYLFTGGLVGLISVAF 34 (538)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999998864
No 2
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.70 E-value=39 Score=19.38 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=10.3
Q ss_pred ccccchhhhhhhhhHH
Q psy4380 3 EITDVQKIGVGLAGFG 18 (140)
Q Consensus 3 ~l~d~qkiGvgl~~~G 18 (140)
|++|+++.|+-.+.+-
T Consensus 2 e~d~RK~mG~Kv~~~l 17 (46)
T d1ppjd2 2 EHDHRKRMGLKMLLMM 17 (46)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 5677777776655443
No 3
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.37 E-value=23 Score=21.13 Aligned_cols=10 Identities=40% Similarity=0.624 Sum_probs=8.4
Q ss_pred ccccchhhhh
Q psy4380 3 EITDVQKIGV 12 (140)
Q Consensus 3 ~l~d~qkiGv 12 (140)
.+|+.|+||+
T Consensus 40 ~Ln~~Q~iGL 49 (57)
T d2bcqa2 40 SLTTQQAIGL 49 (57)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHhH
Confidence 4789999986
No 4
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.10 E-value=59 Score=26.73 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.7
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHH
Q psy4380 4 ITDVQKIGVGLAGFGIAFLFLGVFL 28 (140)
Q Consensus 4 l~d~qkiGvgl~~~G~~f~~lGv~l 28 (140)
-+|-|+||+.-..+|+.+.+.|.++
T Consensus 9 t~dHK~iG~lYl~~~~~~~~~G~~l 33 (514)
T d1v54a_ 9 STNHKDIGTLYLLFGAWAGMVGTAL 33 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999888654
No 5
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.68 E-value=25 Score=20.93 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=8.3
Q ss_pred ccccchhhhh
Q psy4380 3 EITDVQKIGV 12 (140)
Q Consensus 3 ~l~d~qkiGv 12 (140)
.+|+.|+||+
T Consensus 40 ~Lt~~Q~iGL 49 (57)
T d2fmpa2 40 KLNHHQRIGL 49 (57)
T ss_dssp GSCHHHHHHH
T ss_pred hCCHHHHHHH
Confidence 3789999986
No 6
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.79 E-value=32 Score=20.55 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=8.3
Q ss_pred ccccchhhhh
Q psy4380 3 EITDVQKIGV 12 (140)
Q Consensus 3 ~l~d~qkiGv 12 (140)
.+|+.|+||+
T Consensus 42 ~Lt~~Q~iGL 51 (60)
T d1jmsa3 42 RFTQMQKAGF 51 (60)
T ss_dssp CCCHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 4889999986
No 7
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.86 E-value=16 Score=24.35 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=14.5
Q ss_pred ccccchhhhhhhhhHHH
Q psy4380 3 EITDVQKIGVGLAGFGI 19 (140)
Q Consensus 3 ~l~d~qkiGvgl~~~G~ 19 (140)
|++++.|+++++.|.|-
T Consensus 1 ~~~~~~k~kv~iIG~G~ 17 (172)
T d1lc0a1 1 MITNSGKFGVVVVGVGR 17 (172)
T ss_dssp CCCCCCSEEEEEECCSH
T ss_pred CCCCCCCcEEEEEcCCH
Confidence 57888999999999885
No 8
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=8.06 E-value=1e+02 Score=24.87 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.8
Q ss_pred cchhhhhhhhhHHHHHHHHHHHH
Q psy4380 6 DVQKIGVGLAGFGIAFLFLGVFL 28 (140)
Q Consensus 6 d~qkiGvgl~~~G~~f~~lGv~l 28 (140)
|-||||.--...|+.+.++|.++
T Consensus 2 dHK~Ig~~Yl~~~~~~~~iG~~~ 24 (501)
T d1ffta_ 2 DHKRLGIMYIIVAIVMLLRGFAD 24 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998888543
No 9
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=7.33 E-value=85 Score=19.10 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=9.0
Q ss_pred hhHHHHHHHHH
Q psy4380 31 DKGLLAIGNVL 41 (140)
Q Consensus 31 Dr~LLalGNiL 41 (140)
|=.|+++||..
T Consensus 25 DLSLMvLGN~v 35 (62)
T d2otaa1 25 DLALMCLGNAV 35 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 66899999975
No 10
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.79 E-value=1.8e+02 Score=20.89 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHhhH
Q psy4380 14 LAGFGIAFLFLGVFLLFDKG 33 (140)
Q Consensus 14 l~~~G~~f~~lGv~lffDr~ 33 (140)
++++|++.+.+|...+++..
T Consensus 19 ~~s~~l~~~~~g~~~~~~~~ 38 (265)
T d1m56c_ 19 MASVGAFVMLFGAVLWMHGS 38 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 67889999999999998754
Done!