RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4380
(140 letters)
>gnl|CDD|227450 COG5120, GOT1, Membrane protein involved in Golgi transport
[Intracellular trafficking and secretion].
Length = 129
Score = 76.7 bits (189), Expect = 5e-19
Identities = 40/113 (35%), Positives = 68/113 (60%)
Query: 4 ITDVQKIGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFFFQRH 63
+ ++QK GV + G F +G+FL FD+ LL +GN+L I G+ + G ++ FF +
Sbjct: 3 LMNLQKSGVVVTSIGFLFFLVGIFLFFDRALLILGNLLMIIGIFLIAGSRKSMFFFLRPE 62
Query: 64 KVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVLG 116
K++GS+ F G+ ++L+ +P+ G +E G + LF F P FLR +P++G
Sbjct: 63 KIQGSVIFAMGVLLLLYRFPMFGFLLETLGLFLLFRDFIPTIRTFLRTLPLIG 115
>gnl|CDD|217941 pfam04178, Got1, Got1/Sft2-like family. Traffic through the yeast
Golgi complex depends on a member of the syntaxin family
of SNARE proteins, Sed5, present in early Golgi
cisternae. Got1 is thought to facilitate Sed5-dependent
fusion events. This is a family of sequences derived
from eukaryotic proteins. They are similar to a region
of a SNARE-like protein required for traffic through the
Golgi complex, SFT2 protein. This is a conserved protein
with four putative transmembrane helices, thought to be
involved in vesicular transport in later Golgi
compartments.
Length = 116
Score = 64.1 bits (157), Expect = 3e-14
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 9 KIGVGLAGFGIAFLFLGVFLLF-DKGLLAIGNVLFISGLACVIGFERTFRFFFQRHKVKG 67
KIGV G G FLFL V LLF LL +GN+LF+ +IG ++ +F F + ++
Sbjct: 1 KIGVLFFGLGFFFLFLPVLLLFPFALLLTLGNILFLGSTGFLIGPKKQLKFMFSKERLPA 60
Query: 68 SLCFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAI 106
++ FF + + L+ + ++ YG LFS F +A+
Sbjct: 61 TIVFFVSLVLTLY----FALILKSYGLTLLFSIFQILAL 95
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but
intercepts lipids from a host cell exocytic pathway.
Initiation of chlamydial development is concurrent with
modification of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions.
This family probably includes members of the wider Inc
family rather than just IncA.
Length = 186
Score = 31.3 bits (71), Expect = 0.11
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 10 IGVGLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVI 50
G+ L A L + L LLA+G VL GL C++
Sbjct: 21 SGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
>gnl|CDD|227433 COG5102, SFT2, Membrane protein involved in ER to Golgi transport
[Intracellular trafficking and secretion].
Length = 201
Score = 28.0 bits (62), Expect = 1.6
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 34 LLAIGNVLFISGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFVVLF 80
L +G++LF+ ++GF + ++ S FFG + ++
Sbjct: 102 LWTMGSLLFVLMFGFLLGFRAYLEGLTSKERLPHSSWFFGTTLLTIY 148
>gnl|CDD|191096 pfam04799, Fzo_mitofusin, fzo-like conserved region. Family of
putative transmembrane GTPase. The fzo protein is a
mediator of mitochondrial fusion. This conserved region
is also found in the human mitofusin protein.
Length = 171
Score = 27.4 bits (61), Expect = 2.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 73 GGIFVVLFGWPLIGMCIELYGFYHLF 98
GG+ GW LI + LYG +L+
Sbjct: 37 GGVVWKTVGWRLIALSGGLYGSLYLY 62
>gnl|CDD|226092 COG3562, KpsS, Capsule polysaccharide export protein [Cell
envelope biogenesis, outer membrane].
Length = 403
Score = 26.3 bits (58), Expect = 6.5
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 52 FERTFRFFFQRHKVKGSLCF 71
F R F +H + + F
Sbjct: 69 FPTFLRKFIAQHSIDAIVLF 88
>gnl|CDD|220947 pfam11026, DUF2721, Protein of unknown function (DUF2721). This
family is conserved in bacteria. The function is not
known.
Length = 130
Score = 25.5 bits (57), Expect = 8.2
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 19 IAFLFLGVFLLFDKGLLAIGNVLFISGLACVIG 51
I LFL + D L +LF + + +I
Sbjct: 80 ILLLFLSALVDLDLSL--AVAILFGAAMLLLIA 110
>gnl|CDD|237805 PRK14726, PRK14726, bifunctional preprotein translocase subunit
SecD/SecF; Provisional.
Length = 855
Score = 25.8 bits (57), Expect = 8.9
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 70 CFFGGIFVVLFGWPLIGMCIELYGFYHLFSGFFPVAINFLRRIPVL---GMMLNLPGIKG 126
I V I YGF + + + +N + I VL G L LPGI G
Sbjct: 378 GLIAAILVAAL-------MIGFYGFLGVIA-VIALIVNVVLIIAVLSLLGATLTLPGIAG 429
Query: 127 IL 128
I+
Sbjct: 430 IV 431
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.339 0.158 0.511
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,884,801
Number of extensions: 794523
Number of successful extensions: 2341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2266
Number of HSP's successfully gapped: 282
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 54 (24.5 bits)