RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4380
         (140 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 20/139 (14%), Positives = 36/139 (25%), Gaps = 53/139 (38%)

Query: 1   MFEITDVQKIGV-GLAGFGIAFLFLGVFLLFDKGLLAIGNVLFISGLACVIGFERTFRFF 59
           + E+   + + + G+ G G             K  +A+          C           
Sbjct: 144 LLELRPAKNVLIDGVLGSG-------------KTWVAL--------DVC----------- 171

Query: 60  FQRHKVKGSLCFFGGIFVVLFGWPLIGMCIE-------LYGFYHLFSGFFPVAINFLRRI 112
              +KV+        IF     W  +  C         L    +     +    +    I
Sbjct: 172 -LSYKVQ--CKMDFKIF-----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 113 PVLGMMLNLPGIKGILDRL 131
                 L +  I+  L RL
Sbjct: 224 K-----LRIHSIQAELRRL 237


>1uf2_P Outer capsid protein P8; virus components, icosahedral virus; 3.50A
           {Rice dwarf virus} SCOP: a.115.1.3 b.19.1.1
          Length = 421

 Score = 25.9 bits (56), Expect = 5.9
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 68  SLCFFGGIFVVLFGWPLIGMCIELYGFYHL 97
           S    GG   +  G    G C+ + G + +
Sbjct: 270 SFSLGGGNINLELGVAKTGFCVAIEGEFTI 299


>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
           ADP, nucleotide-binding protein, ATP-binding, coiled
           coil, motor protein; HET: ADP; 1.90A {Drosophila
           melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
          Length = 344

 Score = 25.6 bits (57), Expect = 6.6
 Identities = 6/16 (37%), Positives = 9/16 (56%), Gaps = 2/16 (12%)

Query: 32  KGLLAIGNVLFISGLA 47
            GLL+I  V  +  +A
Sbjct: 266 LGLLSINKV--VMSMA 279


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.339    0.158    0.511 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,308,818
Number of extensions: 136943
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 28
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 52 (23.9 bits)