RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4380
         (140 letters)



>d1jd1a_ d.79.1.1 (A:) Highdosage growth inhibitor YER057cp
           (YEO7_YEAST) {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 126

 Score = 25.6 bits (55), Expect = 1.5
 Identities = 8/77 (10%), Positives = 19/77 (24%)

Query: 37  IGNVLFISGLACVIGFERTFRFFFQRHKVKGSLCFFGGIFVVLFGWPLIGMCIELYGFYH 96
           + N++F+SG   V    +           +        +         +          +
Sbjct: 24  VNNLIFLSGQIPVTPDNKLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADIN 83

Query: 97  LFSGFFPVAINFLRRIP 113
            F+ F  V   +     
Sbjct: 84  HFAEFNSVYAKYFNTHK 100


>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha
          subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
          Length = 186

 Score = 24.9 bits (53), Expect = 3.7
 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 3/22 (13%)

Query: 6  DVQKIGV---GLAGFGIAFLFL 24
          DV++  V   G+ G GIA+   
Sbjct: 3  DVKQAAVLGAGIMGGGIAYQSA 24


>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase
           {Lactobacillus casei [TaxId: 1582]}
          Length = 296

 Score = 24.3 bits (51), Expect = 7.1
 Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 105 AINFLRRIPVLGMMLNLPGIKGILDRLAGDTHR 137
            + ++   P L    +   I  +L  L G+  +
Sbjct: 6   TVAYIHSFPRLAKTGDHRRILTLLHAL-GNPQQ 37


>d1uf2c2 b.19.1.1 (C:148-300) RDV p8, central (top) domain {Rice
           dwarf virus [TaxId: 10991]}
          Length = 153

 Score = 23.7 bits (51), Expect = 8.2
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 68  SLCFFGGIFVVLFGWPLIGMCIELYG 93
           S    GG   +  G    G C+ + G
Sbjct: 123 SFSLGGGNINLELGVAKTGFCVAIEG 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.339    0.158    0.511 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 559,632
Number of extensions: 26562
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 12
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 48 (22.4 bits)