BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4382
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R4X4|SSRA_PONAB Translocon-associated protein subunit alpha OS=Pongo abelii GN=SSR1
PE=2 SV=1
Length = 291
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 126/232 (54%), Gaps = 51/232 (21%)
Query: 12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ + N +V P +AT
Sbjct: 94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153
Query: 72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTV------------------- 194
Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
+IE ++GLDGET F+Y+FL A + LL+++G H
Sbjct: 195 --------------------------TVIEREDGLDGETIFMYMFL-AGLGLLVIVGLHQ 227
Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKSP 243
L K++ Q VE GT + D+D WIP+E+LN + SP
Sbjct: 228 LLESRKRK-----RPVQKVEMGTSSQNDVDMSWIPQETLNQIMQSRRDKASP 274
>sp|P43307|SSRA_HUMAN Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1
PE=1 SV=3
Length = 286
Score = 167 bits (422), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 124/222 (55%), Gaps = 51/222 (22%)
Query: 12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ + N +V P +AT
Sbjct: 94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153
Query: 72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTV------------------- 194
Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
+IE ++GLDGET F+Y+FL A + LL+++G H
Sbjct: 195 --------------------------TVIEREDGLDGETIFMYMFL-AGLGLLVIVGLHQ 227
Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
L K++ Q VE GT + D+D WIP+E+LN +
Sbjct: 228 LLESRKRK-----RPIQKVEMGTSSQNDVDMSWIPQETLNQI 264
>sp|P45433|SSRA_ONCMY Translocon-associated protein subunit alpha OS=Oncorhynchus mykiss
GN=ssr1 PE=2 SV=1
Length = 288
Score = 165 bits (417), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 122/231 (52%), Gaps = 51/231 (22%)
Query: 12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
+ PA +V+FLVGFTNKG QDFT+ +L+AS RYP DF FYIQNF+ + + +V+P +A+
Sbjct: 95 EFPANEIVKFLVGFTNKGSQDFTVHSLEASFRYPQDFQFYIQNFTALPLSTVVQPQKQAS 154
Query: 72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
YSF+PA+ +AGRPFGL + L Y+D N F IYN+TV I
Sbjct: 155 FEYSFIPAQPMAGRPFGLVILLNYQDSEGNGFQTAIYNQTVTI----------------- 197
Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
+E++EGLDGET F+Y+FL VVL +
Sbjct: 198 ----------------------------VELEEGLDGETIFMYIFLTGLVVLAVFGMYQV 229
Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKS 242
L S +KR VETGT +D WIP+E+LN + + SPK+
Sbjct: 230 LESRTRKRFPVK------VETGTGGMNGVDISWIPQETLNIMSKASASPKA 274
>sp|A6QLP7|SSRA_BOVIN Translocon-associated protein subunit alpha OS=Bos taurus GN=SSR1
PE=2 SV=1
Length = 286
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 121/222 (54%), Gaps = 51/222 (22%)
Query: 12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ + N +V P +AT
Sbjct: 94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153
Query: 72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV I
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTI----------------- 196
Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
IE ++GLDGET F+Y+FL +L++V
Sbjct: 197 ----------------------------IEREDGLDGETIFMYMFLAGLGLLVVVGLHQL 228
Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
L S +KR Q VE GT + D+D WIP+E+LN +
Sbjct: 229 LESRKRKR------PIQKVEMGTSSQNDVDMSWIPQETLNQI 264
>sp|Q7TPJ0|SSRA_RAT Translocon-associated protein subunit alpha OS=Rattus norvegicus
GN=Ssr1 PE=2 SV=1
Length = 319
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 121/222 (54%), Gaps = 51/222 (22%)
Query: 12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ + N IV P +AT
Sbjct: 95 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTIVPPQRQAT 154
Query: 72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV
Sbjct: 155 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTV------------------- 195
Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
+IE ++GLDGET F+Y+FL +L++V
Sbjct: 196 --------------------------TVIEREDGLDGETIFMYMFLAGLGLLVVVGLHQL 229
Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
L S +KR Q VE GT + D+D WIP+E+LN +
Sbjct: 230 LESRKRKR------PIQKVEMGTSSQNDVDMSWIPQETLNQI 265
>sp|P16967|SSRA_CANFA Translocon-associated protein subunit alpha OS=Canis familiaris
GN=SSR1 PE=1 SV=1
Length = 286
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 121/222 (54%), Gaps = 51/222 (22%)
Query: 12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ + N +V P +AT
Sbjct: 94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153
Query: 72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV I
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTI----------------- 196
Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
IE ++GLDGET F+Y+FL +L++V
Sbjct: 197 ----------------------------IEREDGLDGETIFMYMFLAGLGLLVVVGLHQL 228
Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
L S +KR Q VE GT + D+D WIP+E+LN +
Sbjct: 229 LESRKRKR------PIQKVEMGTSSQNDVDMSWIPQETLNQI 264
>sp|Q9CY50|SSRA_MOUSE Translocon-associated protein subunit alpha OS=Mus musculus GN=Ssr1
PE=1 SV=1
Length = 286
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 121/222 (54%), Gaps = 51/222 (22%)
Query: 12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ + N +V P +AT
Sbjct: 94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153
Query: 72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTV------------------- 194
Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
+IE ++GLDGET F+Y+FL +L++V
Sbjct: 195 --------------------------TVIEREDGLDGETIFMYMFLAGLGLLVVVGLHQL 228
Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
L S +KR Q VE GT + D+D WIP+E+LN +
Sbjct: 229 LESRKRKR------PIQKVEMGTSSQNDVDMSWIPQETLNQI 264
>sp|P53815|SSRA_RABIT Translocon-associated protein subunit alpha OS=Oryctolagus
cuniculus GN=SSR1 PE=2 SV=1
Length = 286
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 119/222 (53%), Gaps = 51/222 (22%)
Query: 12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
D PA ++V FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ + N IV P +AT
Sbjct: 94 DFPANNIVRFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTIVPPQRQAT 153
Query: 72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDFNGNVFQDAVFNQTV------------------- 194
Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
+IE ++GLDG+T F+Y+ L +L++V
Sbjct: 195 --------------------------TVIEREDGLDGQTIFMYMSLAGLGLLVVVGLHQL 228
Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
L S +KR Q VE GT + D+D WIP+E+LN +
Sbjct: 229 LESRNRKR------PIQKVEMGTSSQNDVDMSWIPQETLNQI 264
>sp|Q54R45|SSRA_DICDI Translocon-associated protein subunit alpha OS=Dictyostelium
discoideum GN=ssr1 PE=3 SV=1
Length = 236
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
+ AGSVVE LVGFTN + + + ASL +P DF+ +IQN++ + V+ GH AT
Sbjct: 52 NFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIAVEKGHHAT 111
Query: 72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSF 121
L Y FVP+E + R FGL ++L+Y+D N F + +N T+NI SF
Sbjct: 112 LAYRFVPSEYLEPREFGLLISLEYQDGAQN-FTQTFFNSTINITEKETSF 160
>sp|P45434|SSRA_ARATH Translocon-associated protein subunit alpha OS=Arabidopsis thaliana
GN=At2g21160 PE=2 SV=3
Length = 258
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 13 LPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGH-EAT 71
+PAG E LVG N+GK + + AS+ P D +QN + + N P +AT
Sbjct: 78 VPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQAT 137
Query: 72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLG 118
Y F ++ + F L + Y D + YN T+ ++ G
Sbjct: 138 FPYIFAVSQYLQPGAFDLVGYIIY-DVEGKPYQSVFYNGTIEVVESG 183
>sp|Q2NBZ2|PNP_ERYLH Polyribonucleotide nucleotidyltransferase OS=Erythrobacter
litoralis (strain HTCC2594) GN=pnp PE=3 SV=1
Length = 769
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 147 FFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHFLYSVGKKRVG 201
F EG YNE +N+I DGET V + A L + G F+ +G RVG
Sbjct: 102 LFPEGFYNE-INVIAQVLSYDGETEPDIVAMIAASAALTISGLPFMGPIGAARVG 155
>sp|A0PXN4|SYK_CLONN Lysine--tRNA ligase OS=Clostridium novyi (strain NT) GN=lysS PE=3
SV=1
Length = 510
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 195 VGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKSP-SVHKIDMIPT 253
+G+K++ + K + +E K+ +++ + KE + L+NL K P V+K++ T
Sbjct: 1 MGEKQLTKEEIKARKMEA----KKEAEFNALVKERMQKLENLQEQGKDPFDVYKVERTHT 56
Query: 254 SQYLK 258
SQ +K
Sbjct: 57 SQQVK 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,907,300
Number of Sequences: 539616
Number of extensions: 4368079
Number of successful extensions: 10000
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9966
Number of HSP's gapped (non-prelim): 33
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)