RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4382
(258 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.001
Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 39/164 (23%)
Query: 78 PAEAVAGRPFGLS-VNLQYRDEHNNF-FYEGIYNETVNIITLGYSFVPAEAVAGRPFGLS 135
P E + P LS + RD + ++ + + + I S
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI----------------IESS 362
Query: 136 VNLQYRDEHNNFFYE-GIYNETVNI----IEIDEGL--DGETFFLYVFLGACVVLLLVIG 188
+N+ E+ F ++ + +I + + + D + V + LV
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL---IWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 189 Q-----HFLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPK 227
Q + S+ + K + + +D+ IPK
Sbjct: 420 QPKESTISIPSI------YLELKVKLENEYALHRSIVDHYNIPK 457
Score = 30.2 bits (67), Expect = 0.72
Identities = 6/46 (13%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 204 QSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKSPSVHKID 249
+++ V+ + I+Y ++ ++ +K P + I+
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRMYIE 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.67
Identities = 48/292 (16%), Positives = 79/292 (27%), Gaps = 128/292 (43%)
Query: 46 MDFNFYIQNFSTI--IYNRIVKPGH-EATLGYSFVPAEAVAGRP------FGLSVNLQYR 96
MD Y + ++NR H + T G+S + V P FG + R
Sbjct: 1633 MDL--Y-KTSKAAQDVWNRADN--HFKDTYGFS--ILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 97 DEHNNFFYEGIY-----------------------------NETVN----IITLGYS--- 120
+ ++ +E I + T + + +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 121 ------FVPAEA-VAGRPFG-----------LSVN-----LQYR----------DEHNNF 147
+PA+A AG G +S+ + YR DE
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 148 FYEGIYNETVNIIEIDEGLDGETFFLYV-FLGACVVLLLVI------GQHFLYSVGKKRV 200
Y I +N + E V +G L+ I Q
Sbjct: 1806 NYGMI---AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ----------- 1851
Query: 201 GTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKSPSVHKIDMIP 252
Q V G +L+++ N+ N K + KID+I
Sbjct: 1852 -------QYVAAGDL------------RALDTVTNVLNFIK---LQKIDIIE 1881
Score = 29.2 bits (65), Expect = 1.5
Identities = 42/257 (16%), Positives = 75/257 (29%), Gaps = 79/257 (30%)
Query: 12 DLPAGSVVE----FLVGFT----NKGKQDFTLDTLDASLRYPMDFNFYIQNF-------- 55
D P + E FL G+ K L+ L +F +
Sbjct: 52 DEPT-TPAELVGKFL-GYVSSLVEPSKVGQFDQVLNLCLT---EFE---NCYLEGNDIHA 103
Query: 56 --STIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVN 113
+ ++ L +++ A +A RPF + N+ + +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPF--------DKKSNSALFRAVGEGNAQ 155
Query: 114 IITLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVN--IIEIDEGL----- 166
++ + F G G Y +E + Y+ Y+ V I E L
Sbjct: 156 LVAI---F-------G---GQGNTDDYFEELRD-LYQ-TYHVLVGDLIKFSAETLSELIR 200
Query: 167 ---DGETFFLYVF-----------------LGACVVLLLVIG--QHFLYSVGKKRVG-TA 203
D E F L + + +IG Q Y V K +G T
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 204 QSKKQTVETGTKNSKDI 220
+ ++ T +S+ +
Sbjct: 261 GELRSYLKGATGHSQGL 277
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.97
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 6/21 (28%)
Query: 231 NSLKNLTNS-----PKS-PSV 245
+LK L S S P++
Sbjct: 20 QALKKLQASLKLYADDSAPAL 40
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine,
drug metabolism; NMR {Pseudomonas syringae PV} SCOP:
c.66.1.36
Length = 203
Score = 28.2 bits (62), Expect = 1.9
Identities = 8/74 (10%), Positives = 18/74 (24%), Gaps = 10/74 (13%)
Query: 62 RIVKPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSF 121
++ L + G PF + + + + + +G
Sbjct: 128 ALMPQACSGLLITLEYDQALLEGPPFSVP-----QTW-----LHRVMSGNWEVTKVGGQD 177
Query: 122 VPAEAVAGRPFGLS 135
+ G GL
Sbjct: 178 TLHSSARGLKAGLE 191
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 27.5 bits (61), Expect = 2.4
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 16 GSVVEFLVGFTNKGKQDFTLDTLDASL 42
G + +G G + L+ L+ L
Sbjct: 90 GQIEGKFIGIIECGGINLKLEELEWKL 116
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 2.4
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 203 AQSKKQTVETGTKNSKDIDYDW 224
A SK E K KD++ +W
Sbjct: 103 AASKVMEQEWREKAKKDLE-EW 123
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 27.7 bits (61), Expect = 3.0
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 16 GSVVEFLVGFTNKGKQDFTLDTLDASLR 43
G ++ + T + ++F +++ L
Sbjct: 195 GELLSNFISVTEQLAEEFFTGDVESFLN 222
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 27.7 bits (61), Expect = 3.5
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 7 VYINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLR 43
VY G ++ + + +DF +++ L
Sbjct: 178 VYKG-----GELISNFISVAEQFAEDFFAADVESFLN 209
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 27.0 bits (60), Expect = 3.6
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 16 GSVVEFLVGFTNKGKQDFTLDTLDASL 42
G + +G G + L+ L+ L
Sbjct: 83 GQIEAKFIGIIECGGINLKLEELEWKL 109
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.40A
{Shewanella oneidensis}
Length = 129
Score = 27.0 bits (60), Expect = 3.8
Identities = 6/63 (9%), Positives = 18/63 (28%), Gaps = 11/63 (17%)
Query: 117 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGL--------DG 168
L P ++ G+ + + ++ ++N + T + G
Sbjct: 40 LDC---PQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPAQETTLICASG 96
Query: 169 ETF 171
+
Sbjct: 97 KAK 99
Score = 26.6 bits (59), Expect = 5.3
Identities = 9/84 (10%), Positives = 24/84 (28%), Gaps = 9/84 (10%)
Query: 69 EATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVA 128
L P ++ G+ + + ++ ++N + E
Sbjct: 37 AELLDC---PQVSLKGQDWRNFLTEHHQARYDNLLSH--DVQLGTNCGQPVQHPAQETTL 91
Query: 129 ----GRPFGLSVNLQYRDEHNNFF 148
G+ + +++ Y H F
Sbjct: 92 ICASGKAKDVELSISYIPGHEPMF 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.409
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,955,625
Number of extensions: 233969
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 15
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)