RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4382
         (258 letters)



>d1n4wa2 d.16.1.1 (A:319-450) Cholesterol oxidase {Streptomyces sp.
           [TaxId: 1931]}
          Length = 132

 Score = 26.4 bits (58), Expect = 2.1
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 13  LPAGSVVEFLVGFT-NKGKQDFTLD--TLDASLRYPMDFNFYIQNFSTIIYNRIVKPGH 68
               + V   +  T N  +  F  D  T  A L +  D N    N +  +++RI K   
Sbjct: 49  AGLETWVSLYLAITKNPQRGTFVYDAATDRAKLNWTRDQNAPAVNAAKALFDRINKANG 107


>d1tfra1 a.60.7.1 (A:183-305) T4 RNase H {Bacteriophage T4 [TaxId:
           10665]}
          Length = 123

 Score = 25.5 bits (56), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 215 KNSKDIDYDWIPKESLNSLKNLTNSPKSPSVHKI 248
           +N   ID+D+IP    +++ N  NS K P   KI
Sbjct: 71  ENLVLIDFDYIPDNIASNIVNYYNSYKLPPRGKI 104


>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 217

 Score = 25.8 bits (56), Expect = 4.7
 Identities = 4/28 (14%), Positives = 12/28 (42%)

Query: 16  GSVVEFLVGFTNKGKQDFTLDTLDASLR 43
           G ++   +    +  +DF    +++ L 
Sbjct: 182 GELISNFISVAEQFAEDFFAADVESFLN 209


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 957,565
Number of extensions: 43893
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 10
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)