BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4383
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UKM9|RALY_HUMAN RNA-binding protein Raly OS=Homo sapiens GN=RALY PE=1 SV=1
Length = 306
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ G S+HKGYAF+Q+SN AR+A LGE+GR + GQTL
Sbjct: 46 GRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTL 85
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/37 (62%), Positives = 30/37 (81%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKGYAF+Q+SN AR+A LGE+GR + GQTL I+M
Sbjct: 53 VHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 89
>sp|P19600|HNRPC_XENLA Heterogeneous nuclear ribonucleoprotein C OS=Xenopus laevis
GN=hnrnpc PE=2 SV=1
Length = 282
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ +G S+HKG+AF+QFSN AR+A GEDGR + GQ L
Sbjct: 42 GKIVGCSVHKGFAFVQFSNERTARTAVAGEDGRMIAGQVL 81
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKG+AF+QFSN AR+A GEDGR + GQ L I++
Sbjct: 49 VHKGFAFVQFSNERTARTAVAGEDGRMIAGQVLDINL 85
>sp|Q64012|RALY_MOUSE RNA-binding protein Raly OS=Mus musculus GN=Raly PE=1 SV=3
Length = 312
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ G S+HKGYAF+Q++N AR+A LGE+GR + GQTL
Sbjct: 46 GRVAGCSVHKGYAFVQYANERHARAAVLGENGRVLAGQTL 85
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKGYAF+Q++N AR+A LGE+GR + GQTL I+M
Sbjct: 53 VHKGYAFVQYANERHARAAVLGENGRVLAGQTLDINM 89
>sp|Q5RA82|HNRPC_PONAB Heterogeneous nuclear ribonucleoprotein C OS=Pongo abelii
GN=HNRNPC PE=2 SV=1
Length = 306
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ +G S+HKG+AF+Q+ N +AR+A GEDGR + GQ L
Sbjct: 41 GKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVL 80
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKG+AF+Q+ N +AR+A GEDGR + GQ L I++
Sbjct: 48 VHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINL 84
>sp|P07910|HNRPC_HUMAN Heterogeneous nuclear ribonucleoproteins C1/C2 OS=Homo sapiens
GN=HNRNPC PE=1 SV=4
Length = 306
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ +G S+HKG+AF+Q+ N +AR+A GEDGR + GQ L
Sbjct: 41 GKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVL 80
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKG+AF+Q+ N +AR+A GEDGR + GQ L I++
Sbjct: 48 VHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINL 84
>sp|Q9Z204|HNRPC_MOUSE Heterogeneous nuclear ribonucleoproteins C1/C2 OS=Mus musculus
GN=Hnrnpc PE=1 SV=1
Length = 313
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ +G S+HKG+AF+Q+ N +AR+A GEDGR + GQ L
Sbjct: 41 GKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVL 80
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKG+AF+Q+ N +AR+A GEDGR + GQ L I++
Sbjct: 48 VHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINL 84
>sp|O77768|HNRPC_RABIT Heterogeneous nuclear ribonucleoprotein C OS=Oryctolagus
cuniculus GN=HNRNPC PE=2 SV=1
Length = 306
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ +G S+HKG+AF+Q+ N +AR+A GEDGR + GQ L
Sbjct: 41 GKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVL 80
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKG+AF+Q+ N +AR+A GEDGR + GQ L I++
Sbjct: 48 VHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINL 84
>sp|Q8BTF8|RALYL_MOUSE RNA-binding Raly-like protein OS=Mus musculus GN=Ralyl PE=2 SV=1
Length = 293
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ +G S+HKGYAF+Q+ + AR+A GE+ R + GQ L
Sbjct: 46 GKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPL 85
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKGYAF+Q+ + AR+A GE+ R + GQ L I+M
Sbjct: 53 VHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINM 89
>sp|Q08DJ0|RALYL_BOVIN RNA-binding Raly-like protein OS=Bos taurus GN=RALYL PE=2 SV=1
Length = 293
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ +G S+HKGYAF+Q+ + AR+A GE+ R + GQ L
Sbjct: 46 GKIVGCSVHKGYAFVQYMSERHARAAVAGENARIIAGQPL 85
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKGYAF+Q+ + AR+A GE+ R + GQ L I+M
Sbjct: 53 VHKGYAFVQYMSERHARAAVAGENARIIAGQPLDINM 89
>sp|Q86SE5|RALYL_HUMAN RNA-binding Raly-like protein OS=Homo sapiens GN=RALYL PE=1 SV=2
Length = 291
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ +G S+HKGYAF+Q+ + AR+A GE+ R + GQ L
Sbjct: 46 GKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPL 85
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKGYAF+Q+ + AR+A GE+ R + GQ L I+M
Sbjct: 53 VHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINM 89
>sp|O60812|HNRCL_HUMAN Heterogeneous nuclear ribonucleoprotein C-like 1 OS=Homo sapiens
GN=HNRNPCL1 PE=1 SV=1
Length = 293
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ G S+HKG+AF+Q+ +AR+A GEDGR + Q +
Sbjct: 41 GKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVV 80
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKG+AF+Q+ +AR+A GEDGR + Q + I++
Sbjct: 48 VHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINL 84
>sp|Q0VFL7|RALYL_XENTR RNA-binding Raly-like protein OS=Xenopus tropicalis GN=ralyl PE=2
SV=1
Length = 291
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ +G S+HKGYAF+Q+ + AR+A GE+ R + GQ L
Sbjct: 46 GKIVGCSVHKGYAFVQYISERHARAAVTGENSRIIGGQPL 85
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
+HKGYAF+Q+ + AR+A GE+ R + GQ L I+M
Sbjct: 53 VHKGYAFVQYISERHARAAVTGENSRIIGGQPLDINM 89
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ ISM G+AF+ F + DA AC DG+T+ G ++
Sbjct: 26 GKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSM 65
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQT--LGISMHKG 40
M G+AF+ F + DA AC DG+T+ G + L + M +G
Sbjct: 33 MKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARG 74
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40
G+AF++F +P DA A G DG+ + G + + + G
Sbjct: 48 GFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 84
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 31 QTLGISMHK-GYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
+T+ I+ + G+AF++F +P DA A G DG+ + G +
Sbjct: 38 RTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 77
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40
G+AF++F +P DA A G DG+ + G + + + G
Sbjct: 77 GFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 113
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 31 QTLGISMHK-GYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
+T+ I+ + G+AF++F +P DA A G DG+ + G +
Sbjct: 67 RTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 106
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7
PE=2 SV=1
Length = 235
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40
G+AF++F +P DA A G DG+ + G + + + G
Sbjct: 48 GFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 84
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 31 QTLGISMHK-GYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
+T+ I+ + G+AF++F +P DA A G DG+ + G +
Sbjct: 38 RTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 77
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D
OS=Homo sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAF 43
+G+AFI F NP DA++A +G+++ G+ + + K +F
Sbjct: 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 35 ISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
S +G+AFI F NP DA++A +G+++ G+ +
Sbjct: 44 TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B
OS=Homo sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAF 43
+G+AFI F NP DA++A +G+++ G+ + + K +F
Sbjct: 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 35 ISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
S +G+AFI F NP DA++A +G+++ G+ +
Sbjct: 44 TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1
OS=Homo sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAF 43
+G+AFI F NP DA++A +G+++ G+ + + K +F
Sbjct: 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 35 ISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
S +G+AFI F NP DA++A +G+++ G+ +
Sbjct: 44 TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E
OS=Homo sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAF 43
+G+AFI F NP DA++A +G+++ G+ + + K +F
Sbjct: 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 35 ISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
S +G+AFI F NP DA++A +G+++ G+ +
Sbjct: 44 TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40
G+AF++F +P DA A DGRT+ G + + + G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 40 GYAFIQFSNPHDARSACLGEDGRTVLG 66
G+AF++F +P DA A DGRT+ G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCG 73
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40
G+AF++F +P DA A DGRT+ G + + + G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 40 GYAFIQFSNPHDARSACLGEDGRTVLG 66
G+AF++F +P DA A DGRT+ G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCG 73
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40
G+AF++F +P DA A DGRT+ G + + + G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 40 GYAFIQFSNPHDARSACLGEDGRTVLG 66
G+AF++F +P DA A DGRT+ G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCG 73
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35
+G+ F+ F NP DA+ A + +G++V G+ + +
Sbjct: 47 RGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRV 79
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 39 KGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
+G+ F+ F NP DA+ A + +G++V G+ +
Sbjct: 47 RGFGFVTFENPEDAKDAMMAMNGKSVDGRQI 77
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6
PE=2 SV=1
Length = 345
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70
G+ LGI + GY F++F + DA A +G+ + G+ ++
Sbjct: 26 GRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVI 66
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C
OS=Homo sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAF 43
+G+AFI F NP DA++A +G+++ G+ + + + +F
Sbjct: 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAQKPSF 88
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 35 ISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75
S +G+AFI F NP DA++A +G+++ G+ + + Q
Sbjct: 44 TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAQ 84
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAF 43
+G+AFI F NP DA++A +G ++ G+ + + K +F
Sbjct: 48 RGFAFITFENPADAKNAAKDMNGTSLHGKAIKVEQAKKPSF 88
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 35 ISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
S +G+AFI F NP DA++A +G ++ G+ +
Sbjct: 44 TSKSRGFAFITFENPADAKNAAKDMNGTSLHGKAI 78
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35
+G+ F+ F NP DA+ A + +G+ V G+ + +
Sbjct: 46 RGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRV 78
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 39 KGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
+G+ F+ F NP DA+ A + +G+ V G+ +
Sbjct: 46 RGFGFVTFENPDDAKDAMMAMNGKAVDGRQI 76
>sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1
Length = 517
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
KG+ F +F NP DA A G DG+ G L
Sbjct: 351 KGFCFCEFKNPSDAEVAISGLDGKDTYGNKL 381
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 39 KGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
KG+ F +F NP DA A G DG+ G L
Sbjct: 351 KGFCFCEFKNPSDAEVAISGLDGKDTYGNKL 381
>sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich domain 1 OS=Rattus norvegicus
GN=Rnps1 PE=2 SV=1
Length = 305
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71
+ KGYA+++F NP +A A DG + GQ + +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 235
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
+ KGYA+++F NP +A A DG + GQ +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>sp|Q5NVM8|RNPS1_PONAB RNA-binding protein with serine-rich domain 1 OS=Pongo abelii
GN=RNPS1 PE=2 SV=1
Length = 305
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71
+ KGYA+++F NP +A A DG + GQ + +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 235
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
+ KGYA+++F NP +A A DG + GQ +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>sp|Q99M28|RNPS1_MOUSE RNA-binding protein with serine-rich domain 1 OS=Mus musculus
GN=Rnps1 PE=2 SV=1
Length = 305
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71
+ KGYA+++F NP +A A DG + GQ + +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 235
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
+ KGYA+++F NP +A A DG + GQ +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>sp|Q4R5N1|RNPS1_MACFA RNA-binding protein with serine-rich domain 1 OS=Macaca
fascicularis GN=RNPS1 PE=2 SV=1
Length = 305
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71
+ KGYA+++F NP +A A DG + GQ + +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 235
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
+ KGYA+++F NP +A A DG + GQ +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>sp|Q15287|RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 OS=Homo sapiens
GN=RNPS1 PE=1 SV=1
Length = 305
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71
+ KGYA+++F NP +A A DG + GQ + +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 235
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
+ KGYA+++F NP +A A DG + GQ +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>sp|A6QR16|RNPS1_BOVIN RNA-binding protein with serine-rich domain 1 OS=Bos taurus
GN=RNPS1 PE=2 SV=1
Length = 305
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71
+ KGYA+++F NP +A A DG + GQ + +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 235
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
+ KGYA+++F NP +A A DG + GQ +
Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX
PE=2 SV=1
Length = 396
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAF 43
+G+AFI F +P DA++A +G+++ G+ + ++ AF
Sbjct: 49 RGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQATKPAF 89
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 19 ACLGEDGR---TVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
A G+ GR +L + + +G+AFI F +P DA++A +G+++ G+ +
Sbjct: 26 ATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAI 79
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 39 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL--QYYNGCRYVSPTPTT 89
+G+AF+ F +P DA++A +G+ + G+ ++ + + R+V PTP +
Sbjct: 49 RGFAFVTFESPADAKAAARDMNGKYLDGKAIMVAQTIKPAFKSSRWVPPTPGS 101
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis
thaliana GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40
M + YAF++FS+P DA A DGR G + + +G
Sbjct: 42 MKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRG 81
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
G+ + M + YAF++FS+P DA A DGR G +
Sbjct: 35 GRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRI 74
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 19 ACLGEDGRTV---LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
A G+ GR V L + + +G+AF+ F +P DA+ A +G+++ G+ +
Sbjct: 26 AVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAI 79
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35
+G+AF+ F +P DA+ A +G+++ G+ + +
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKV 81
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes
GN=RBMX PE=2 SV=1
Length = 391
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 19 ACLGEDGRTV---LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
A G+ GR V L + + +G+AF+ F +P DA+ A +G+++ G+ +
Sbjct: 26 AVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAI 79
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35
+G+AF+ F +P DA+ A +G+++ G+ + +
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKV 81
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 19 ACLGEDGRTV---LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
A G+ GR V L + + +G+AF+ F +P DA+ A +G+++ G+ +
Sbjct: 26 AVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAI 79
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35
+G+AF+ F +P DA+ A +G+++ G+ + +
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKV 81
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 19 ACLGEDGRTV---LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
A G+ GR V L + + +G+AF+ F +P DA+ A +G+++ G+ +
Sbjct: 26 AVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAI 79
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35
+G+AF+ F +P DA+ A +G+++ G+ + +
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKV 81
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 39 KGYAFIQFSNPHDARSACLGEDGRTVLGQT-LVSYKLQ-YYNGCRYVSPTPTT 89
+G+AF+ F +P DA++A +G+ + G+ +V+ ++ + R+V PTP +
Sbjct: 49 RGFAFVTFESPADAKAAARDMNGKYLDGKAIMVAQTIKPAFESSRWVPPTPGS 101
>sp|Q6PG31|RNPS1_DANRE RNA-binding protein with serine-rich domain 1 OS=Danio rerio
GN=rnps1 PE=2 SV=1
Length = 283
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 36 SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71
++ KGYA++++ +P DA+ A DG + GQ + +
Sbjct: 176 NVSKGYAYVEYESPEDAQKALKHMDGGQIDGQEITA 211
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
KGYA++++ +P DA+ A DG + GQ +
Sbjct: 179 KGYAYVEYESPEDAQKALKHMDGGQIDGQEI 209
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 19 ACLGEDGRTV---LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
A G+ GR V L + + +G+AF+ F +P DA+ A +G+++ G+ +
Sbjct: 26 AVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAI 79
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35
+G+AF+ F +P DA+ A +G+++ G+ + +
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKV 81
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 19 ACLGEDGRTV---LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
A G+ GR V L + + +G+AF+ F +P DA+ A +G+++ G+ +
Sbjct: 26 AVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAI 79
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35
+G+AF+ F +P DA+ A +G+++ G+ + +
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKV 81
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAF 43
+G+AF+ F +P DA++A +G+++ G+ + ++ AF
Sbjct: 49 RGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQATKPAF 89
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 8 IQFSNPHDARSACLGEDGRTV---LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTV 64
+ A A G+ GR V L + + +G+AF+ F +P DA++A +G+++
Sbjct: 15 LNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSL 74
Query: 65 LGQTL 69
G+ +
Sbjct: 75 DGKAI 79
>sp|Q6MFP4|EIF3G_NEUCR Eukaryotic translation initiation factor 3 subunit G OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=tif-35 PE=3 SV=2
Length = 297
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 21 LGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDG 61
G R L + + KG+AFI F++ DA AC DG
Sbjct: 240 FGRVTRVFLAKDRDTGLAKGFAFISFADRSDAVKACAKMDG 280
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35
+G+ F+ F N DA+ A G +G+TV G+ + +
Sbjct: 47 RGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRV 79
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 39 KGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
+G+ F+ F N DA+ A G +G+TV G+ +
Sbjct: 47 RGFGFVTFENCEDAKDAMAGMNGKTVDGRQI 77
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLG 34
+GYAF+ F NP DAR A TV G G
Sbjct: 241 RGYAFVNFDNPEDARRA-----AETVNGTKFG 267
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 39 KGYAFIQFSNPHDARSA 55
+GYAF+ F NP DAR A
Sbjct: 241 RGYAFVNFDNPEDARRA 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,617,360
Number of Sequences: 539616
Number of extensions: 1293815
Number of successful extensions: 3376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3144
Number of HSP's gapped (non-prelim): 246
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)