Query psy4383
Match_columns 89
No_of_seqs 116 out of 1154
Neff 7.8
Searched_HMMs 46136
Date Sat Aug 17 00:07:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01645 half-pint poly-U bin 99.7 2.1E-17 4.5E-22 125.5 10.5 84 2-85 148-292 (612)
2 KOG0148|consensus 99.7 2.4E-16 5.2E-21 109.6 8.5 69 2-70 103-231 (321)
3 TIGR01659 sex-lethal sex-letha 99.7 4.1E-16 9E-21 112.2 9.1 71 2-72 148-270 (346)
4 KOG0131|consensus 99.6 4.1E-16 8.9E-21 103.1 6.0 84 2-85 50-187 (203)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 2.1E-15 4.6E-20 106.9 9.4 66 2-67 44-159 (352)
6 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.6E-14 3.5E-19 106.9 10.3 78 2-82 336-504 (509)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.7E-14 3.7E-19 102.3 9.6 34 38-71 310-343 (352)
8 TIGR01628 PABP-1234 polyadenyl 99.6 1.9E-14 4.2E-19 108.0 9.9 72 2-73 41-163 (562)
9 KOG0145|consensus 99.6 1.6E-14 3.5E-19 100.5 7.2 73 2-74 82-206 (360)
10 KOG0124|consensus 99.5 6.5E-15 1.4E-19 106.3 5.2 72 1-72 153-285 (544)
11 TIGR01628 PABP-1234 polyadenyl 99.5 5.2E-14 1.1E-18 105.7 9.8 74 2-75 218-362 (562)
12 TIGR01622 SF-CC1 splicing fact 99.5 7.4E-14 1.6E-18 102.3 10.2 71 2-73 130-262 (457)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.5 7.4E-14 1.6E-18 103.3 9.4 72 2-74 222-372 (509)
14 KOG0117|consensus 99.5 6.7E-14 1.4E-18 102.5 8.7 37 38-74 292-328 (506)
15 TIGR01622 SF-CC1 splicing fact 99.5 2.2E-13 4.8E-18 99.8 9.4 43 38-83 409-451 (457)
16 TIGR01648 hnRNP-R-Q heterogene 99.5 4.4E-13 9.5E-18 101.8 10.3 73 2-74 181-304 (578)
17 KOG0110|consensus 99.5 1.6E-13 3.4E-18 104.6 6.9 70 1-70 558-686 (725)
18 KOG0123|consensus 99.4 5.5E-13 1.2E-17 96.8 8.0 69 2-71 36-147 (369)
19 KOG0145|consensus 99.4 2.3E-12 5E-17 89.8 8.1 34 38-71 319-352 (360)
20 KOG0147|consensus 99.4 1.6E-12 3.4E-17 97.0 7.7 48 38-88 489-536 (549)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 4.2E-12 9.1E-17 94.5 9.1 77 2-78 312-478 (481)
22 TIGR01648 hnRNP-R-Q heterogene 99.4 2.5E-12 5.5E-17 97.6 8.0 71 2-72 98-217 (578)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 8.2E-12 1.8E-16 92.9 9.4 70 2-71 37-168 (481)
24 KOG0127|consensus 99.3 2.4E-12 5.2E-17 96.5 6.3 70 2-71 46-190 (678)
25 KOG0109|consensus 99.2 1.5E-11 3.3E-16 86.5 5.9 69 2-70 35-143 (346)
26 KOG0123|consensus 99.2 4.8E-11 1E-15 86.7 7.0 73 2-75 115-244 (369)
27 KOG0147|consensus 99.1 4.9E-10 1.1E-14 83.8 7.5 74 2-76 220-357 (549)
28 KOG0106|consensus 99.1 1.1E-10 2.4E-15 79.4 3.4 71 1-71 33-165 (216)
29 smart00361 RRM_1 RNA recogniti 99.0 4.8E-10 1E-14 63.6 4.9 34 38-71 36-69 (70)
30 KOG0125|consensus 99.0 3.9E-10 8.4E-15 80.5 4.9 61 14-74 110-171 (376)
31 TIGR01645 half-pint poly-U bin 99.0 2.9E-09 6.4E-14 81.5 9.5 35 2-36 245-279 (612)
32 KOG0144|consensus 99.0 7.1E-10 1.5E-14 81.4 5.7 73 2-74 75-203 (510)
33 PF13893 RRM_5: RNA recognitio 98.9 5.1E-09 1.1E-13 56.7 6.5 42 30-71 9-53 (56)
34 PLN03134 glycine-rich RNA-bind 98.9 7.9E-09 1.7E-13 66.4 8.0 64 11-74 45-111 (144)
35 KOG0127|consensus 98.9 7.6E-09 1.6E-13 78.0 8.8 34 4-37 159-192 (678)
36 KOG0120|consensus 98.9 2.8E-09 6.2E-14 79.8 6.1 81 1-84 329-496 (500)
37 KOG4207|consensus 98.9 1.7E-09 3.8E-14 73.3 3.9 70 7-76 20-92 (256)
38 KOG0148|consensus 98.9 5.1E-09 1.1E-13 73.3 5.5 51 21-71 83-136 (321)
39 smart00361 RRM_1 RNA recogniti 98.9 6.7E-09 1.4E-13 58.9 5.0 35 2-36 36-70 (70)
40 KOG0146|consensus 98.8 4.3E-09 9.2E-14 73.9 4.2 33 38-70 326-358 (371)
41 KOG0111|consensus 98.8 3.8E-09 8.3E-14 72.4 2.4 37 38-74 51-87 (298)
42 PF00076 RRM_1: RNA recognitio 98.8 1.5E-08 3.2E-13 56.0 4.1 33 38-70 38-70 (70)
43 KOG0107|consensus 98.7 8.9E-09 1.9E-13 68.1 3.4 36 37-72 45-80 (195)
44 KOG0144|consensus 98.7 2.7E-08 5.8E-13 73.3 5.6 34 38-71 465-498 (510)
45 PLN03120 nucleic acid binding 98.7 9.3E-08 2E-12 66.7 6.9 66 9-75 13-78 (260)
46 PLN03134 glycine-rich RNA-bind 98.7 6.4E-08 1.4E-12 62.2 5.3 38 2-39 75-112 (144)
47 PF13893 RRM_5: RNA recognitio 98.6 8.9E-08 1.9E-12 51.7 4.9 35 3-37 21-55 (56)
48 KOG0125|consensus 98.6 3.5E-08 7.7E-13 70.6 3.8 35 2-36 135-169 (376)
49 TIGR01659 sex-lethal sex-letha 98.6 1E-07 2.3E-12 68.9 5.8 63 10-72 117-182 (346)
50 KOG0111|consensus 98.5 7E-08 1.5E-12 66.2 2.9 36 2-37 51-86 (298)
51 smart00360 RRM RNA recognition 98.5 3.4E-07 7.5E-12 49.4 4.8 34 38-71 37-70 (71)
52 KOG0105|consensus 98.5 2.9E-07 6.3E-12 61.8 5.0 64 3-66 45-177 (241)
53 KOG4207|consensus 98.5 1.2E-07 2.6E-12 64.5 3.0 38 2-39 54-91 (256)
54 PF00076 RRM_1: RNA recognitio 98.5 3.7E-07 8.1E-12 50.3 4.3 33 2-34 38-70 (70)
55 PF14259 RRM_6: RNA recognitio 98.4 3.5E-07 7.5E-12 51.0 4.1 33 38-70 38-70 (70)
56 KOG0107|consensus 98.4 2E-07 4.3E-12 61.8 3.2 34 2-35 46-79 (195)
57 KOG0113|consensus 98.4 1.5E-06 3.2E-11 61.7 7.7 64 8-71 109-175 (335)
58 smart00362 RRM_2 RNA recogniti 98.4 7.7E-07 1.7E-11 48.2 5.0 34 38-71 38-71 (72)
59 KOG1548|consensus 98.4 1.7E-06 3.6E-11 62.4 7.8 72 2-73 182-348 (382)
60 KOG0131|consensus 98.4 9.1E-07 2E-11 59.0 4.9 39 37-75 49-87 (203)
61 PLN03213 repressor of silencin 98.3 1E-06 2.2E-11 66.4 5.7 67 8-75 18-86 (759)
62 PLN03121 nucleic acid binding 98.3 2.1E-06 4.6E-11 59.4 6.6 62 13-75 18-79 (243)
63 KOG0122|consensus 98.3 9.7E-07 2.1E-11 61.1 4.0 35 37-71 229-263 (270)
64 KOG0122|consensus 98.3 1.5E-06 3.3E-11 60.2 4.5 39 1-39 229-267 (270)
65 smart00360 RRM RNA recognition 98.3 2.5E-06 5.3E-11 46.0 4.5 35 2-36 37-71 (71)
66 KOG0121|consensus 98.2 1.4E-06 3E-11 55.5 3.6 66 6-71 42-110 (153)
67 KOG0130|consensus 98.2 3.5E-06 7.7E-11 54.1 5.2 46 38-84 113-158 (170)
68 KOG0124|consensus 98.2 3.2E-06 7E-11 61.8 4.9 67 6-75 119-191 (544)
69 smart00362 RRM_2 RNA recogniti 98.2 5.2E-06 1.1E-10 44.9 4.7 35 2-36 38-72 (72)
70 cd00590 RRM RRM (RNA recogniti 98.1 7.1E-06 1.5E-10 44.5 4.9 34 38-71 39-72 (74)
71 KOG0121|consensus 98.1 8.9E-06 1.9E-10 51.8 5.6 38 4-41 79-116 (153)
72 KOG4208|consensus 98.1 5E-06 1.1E-10 56.3 4.7 37 38-74 91-127 (214)
73 COG0724 RNA-binding proteins ( 98.1 1.3E-05 2.9E-10 52.9 6.6 62 13-74 128-192 (306)
74 KOG0110|consensus 98.1 7.9E-06 1.7E-10 63.3 5.9 64 8-71 523-592 (725)
75 KOG4206|consensus 98.1 1.4E-05 3E-10 54.6 6.5 35 2-36 51-85 (221)
76 PF14259 RRM_6: RNA recognitio 98.1 7.3E-06 1.6E-10 45.6 4.3 33 2-34 38-70 (70)
77 KOG0108|consensus 98.1 6.9E-06 1.5E-10 61.1 5.0 69 7-75 25-96 (435)
78 KOG4205|consensus 98.1 1.6E-06 3.6E-11 62.0 1.5 36 38-74 138-173 (311)
79 KOG0226|consensus 98.0 5.9E-06 1.3E-10 57.7 3.6 33 38-70 231-263 (290)
80 KOG0149|consensus 98.0 1.5E-05 3.3E-10 54.9 5.0 63 8-71 20-85 (247)
81 cd00590 RRM RRM (RNA recogniti 98.0 2.7E-05 5.8E-10 42.2 5.1 35 2-36 39-73 (74)
82 KOG4208|consensus 98.0 6.9E-06 1.5E-10 55.6 3.2 37 1-37 90-126 (214)
83 KOG4212|consensus 98.0 3.7E-05 8.1E-10 57.4 7.0 35 2-36 85-119 (608)
84 KOG0113|consensus 98.0 1.7E-05 3.6E-10 56.5 4.9 36 2-37 142-177 (335)
85 PLN03120 nucleic acid binding 97.9 2E-05 4.3E-10 55.2 4.8 39 2-41 42-80 (260)
86 COG0724 RNA-binding proteins ( 97.8 3.8E-05 8.2E-10 50.7 4.8 38 2-39 156-193 (306)
87 KOG0130|consensus 97.8 1.3E-05 2.8E-10 51.5 2.4 36 2-37 113-148 (170)
88 KOG0109|consensus 97.8 1.9E-05 4E-10 56.2 3.0 47 27-73 24-70 (346)
89 KOG0108|consensus 97.7 3.4E-05 7.4E-10 57.5 3.8 38 2-39 59-96 (435)
90 KOG4211|consensus 97.7 7.9E-05 1.7E-09 55.9 5.3 70 3-74 49-179 (510)
91 KOG0126|consensus 97.7 1.7E-05 3.7E-10 53.2 1.6 43 38-80 76-118 (219)
92 KOG0120|consensus 97.7 2.6E-05 5.6E-10 58.9 2.8 69 2-71 222-363 (500)
93 KOG0117|consensus 97.7 0.00022 4.7E-09 53.2 7.0 54 18-71 101-158 (506)
94 KOG0114|consensus 97.7 0.00016 3.4E-09 44.7 5.2 38 38-75 56-93 (124)
95 PLN03213 repressor of silencin 97.6 7E-05 1.5E-09 56.8 4.0 37 3-39 48-86 (759)
96 PF11608 Limkain-b1: Limkain b 97.6 0.00014 3E-09 43.2 4.4 46 29-79 31-76 (90)
97 KOG4206|consensus 97.6 9E-05 2E-09 50.7 3.9 54 20-76 33-86 (221)
98 KOG0126|consensus 97.6 2.1E-05 4.5E-10 52.8 0.7 36 2-37 76-111 (219)
99 KOG1190|consensus 97.6 0.00033 7.2E-09 51.9 6.6 66 4-69 336-482 (492)
100 KOG4661|consensus 97.5 0.00022 4.7E-09 55.0 5.6 69 14-82 419-490 (940)
101 KOG4212|consensus 97.5 0.00027 5.9E-09 52.9 5.9 38 38-75 85-122 (608)
102 KOG0226|consensus 97.5 4.8E-05 1E-09 53.2 1.7 36 2-37 231-266 (290)
103 KOG1457|consensus 97.4 0.00048 1E-08 47.7 5.9 28 3-30 77-104 (284)
104 KOG0105|consensus 97.4 0.00028 6.1E-09 47.6 4.1 46 29-74 30-80 (241)
105 KOG0146|consensus 97.3 6.7E-05 1.5E-09 53.1 0.9 38 2-39 326-363 (371)
106 KOG0149|consensus 97.3 0.00025 5.4E-09 49.0 2.8 36 1-37 52-87 (247)
107 PLN03121 nucleic acid binding 97.2 0.00072 1.6E-08 47.0 4.7 35 2-37 43-77 (243)
108 KOG0114|consensus 97.0 0.00098 2.1E-08 41.2 3.6 35 2-36 56-90 (124)
109 KOG0106|consensus 97.0 0.00051 1.1E-08 47.0 2.5 41 29-69 25-65 (216)
110 KOG4209|consensus 96.9 0.0023 5E-08 44.2 4.7 33 38-71 142-174 (231)
111 KOG1190|consensus 96.7 0.0052 1.1E-07 45.7 6.0 34 38-71 334-367 (492)
112 KOG2202|consensus 96.6 0.00086 1.9E-08 46.8 1.3 34 38-71 109-142 (260)
113 KOG0132|consensus 96.6 0.0042 9.1E-08 49.2 5.0 56 2-57 456-527 (894)
114 KOG1456|consensus 96.5 0.019 4E-07 42.6 7.6 34 38-71 324-357 (494)
115 KOG1457|consensus 96.5 0.0078 1.7E-07 41.8 5.3 29 38-66 76-104 (284)
116 PF04059 RRM_2: RNA recognitio 96.4 0.004 8.7E-08 37.7 3.1 29 38-66 44-72 (97)
117 KOG0415|consensus 96.4 0.0058 1.3E-07 44.9 4.3 56 16-71 255-313 (479)
118 KOG0132|consensus 96.4 0.0078 1.7E-07 47.8 5.2 40 32-71 450-489 (894)
119 KOG1996|consensus 96.3 0.0048 1E-07 44.3 3.2 38 42-82 332-369 (378)
120 PF11608 Limkain-b1: Limkain b 96.3 0.0072 1.6E-07 35.9 3.5 37 2-38 38-74 (90)
121 PF08952 DUF1866: Domain of un 96.1 0.021 4.5E-07 37.0 5.4 42 29-71 60-101 (146)
122 KOG0415|consensus 95.9 0.0055 1.2E-07 45.0 2.2 44 3-46 281-324 (479)
123 KOG1456|consensus 95.9 0.041 8.9E-07 40.8 6.5 80 3-82 325-493 (494)
124 KOG4209|consensus 95.8 0.011 2.4E-07 40.8 3.4 35 2-37 142-176 (231)
125 KOG0153|consensus 95.7 0.025 5.4E-07 41.3 4.8 42 31-72 256-298 (377)
126 KOG0533|consensus 95.5 0.033 7.2E-07 38.8 4.6 38 38-75 123-160 (243)
127 KOG4661|consensus 95.4 0.017 3.6E-07 45.0 3.2 35 3-37 447-481 (940)
128 PF04059 RRM_2: RNA recognitio 95.4 0.022 4.8E-07 34.4 3.2 29 2-30 44-72 (97)
129 COG5175 MOT2 Transcriptional r 95.4 0.037 8.1E-07 40.6 4.7 29 42-70 168-196 (480)
130 KOG0151|consensus 95.1 0.025 5.4E-07 44.8 3.4 48 38-85 218-268 (877)
131 KOG2314|consensus 95.0 0.036 7.9E-07 42.9 3.9 37 38-74 104-141 (698)
132 KOG1365|consensus 94.8 0.005 1.1E-07 45.6 -1.0 38 38-75 323-360 (508)
133 KOG4210|consensus 94.8 0.019 4.1E-07 40.8 1.8 34 38-72 226-259 (285)
134 PF05172 Nup35_RRM: Nup53/35/4 94.6 0.12 2.6E-06 31.4 4.9 32 38-70 53-84 (100)
135 KOG4454|consensus 94.5 0.022 4.8E-07 39.5 1.6 66 5-70 51-156 (267)
136 KOG4660|consensus 94.2 0.018 4E-07 44.0 0.8 33 38-70 111-143 (549)
137 KOG4211|consensus 94.2 0.11 2.3E-06 39.5 4.8 58 16-74 24-83 (510)
138 KOG4454|consensus 94.0 0.059 1.3E-06 37.4 2.8 41 29-70 33-80 (267)
139 KOG2314|consensus 93.9 0.069 1.5E-06 41.4 3.3 35 2-36 104-139 (698)
140 KOG1548|consensus 93.8 0.065 1.4E-06 39.2 2.9 47 38-84 182-228 (382)
141 PF08952 DUF1866: Domain of un 93.7 0.15 3.2E-06 33.1 4.1 31 6-37 73-103 (146)
142 KOG0128|consensus 93.6 0.03 6.4E-07 44.9 1.0 68 3-70 709-808 (881)
143 KOG4307|consensus 93.5 0.21 4.6E-06 39.8 5.4 58 15-72 880-942 (944)
144 KOG4205|consensus 93.5 0.044 9.5E-07 39.5 1.6 36 38-74 47-82 (311)
145 KOG4660|consensus 93.0 0.042 9.1E-07 42.1 0.9 34 2-35 111-144 (549)
146 KOG0153|consensus 92.9 0.17 3.8E-06 37.0 3.9 39 2-40 263-302 (377)
147 PF03880 DbpA: DbpA RNA bindin 92.7 0.24 5.3E-06 28.0 3.6 45 28-73 28-73 (74)
148 KOG0116|consensus 92.0 0.69 1.5E-05 34.7 6.2 57 17-74 305-364 (419)
149 PF08777 RRM_3: RNA binding mo 91.5 0.25 5.3E-06 30.1 2.9 41 31-71 27-74 (105)
150 PF14605 Nup35_RRM_2: Nup53/35 91.3 0.44 9.6E-06 25.4 3.5 28 29-56 24-53 (53)
151 KOG2193|consensus 90.7 0.033 7.2E-07 41.9 -1.8 71 1-71 35-151 (584)
152 PF11767 SET_assoc: Histone ly 90.5 0.7 1.5E-05 26.0 3.9 32 38-70 33-64 (66)
153 KOG0533|consensus 89.4 0.53 1.2E-05 32.9 3.4 36 2-37 123-158 (243)
154 COG5175 MOT2 Transcriptional r 89.3 0.5 1.1E-05 34.9 3.3 31 6-36 168-198 (480)
155 KOG1996|consensus 89.0 0.57 1.2E-05 33.9 3.4 30 6-35 332-361 (378)
156 PF05172 Nup35_RRM: Nup53/35/4 88.9 0.9 2E-05 27.5 3.8 28 6-34 57-84 (100)
157 KOG2202|consensus 88.4 0.29 6.2E-06 34.5 1.5 35 3-37 110-144 (260)
158 PF11767 SET_assoc: Histone ly 87.6 1.4 3.1E-05 24.7 3.8 29 7-35 37-65 (66)
159 KOG1995|consensus 87.1 0.37 8E-06 35.3 1.5 43 37-79 114-156 (351)
160 PF03880 DbpA: DbpA RNA bindin 86.7 0.84 1.8E-05 25.7 2.6 33 3-36 40-72 (74)
161 KOG0151|consensus 86.4 0.75 1.6E-05 36.8 2.9 37 3-39 219-255 (877)
162 PF11823 DUF3343: Protein of u 85.5 4.2 9.1E-05 22.7 5.1 54 4-57 2-57 (73)
163 KOG1365|consensus 85.2 2.3 5E-05 32.0 4.8 31 38-69 205-235 (508)
164 PF11823 DUF3343: Protein of u 84.8 1.6 3.4E-05 24.5 3.1 30 40-69 2-31 (73)
165 PF04847 Calcipressin: Calcipr 81.9 2.8 6.1E-05 28.1 3.8 36 40-75 32-69 (184)
166 KOG4307|consensus 81.3 2.5 5.5E-05 34.0 3.9 35 3-37 909-943 (944)
167 KOG2068|consensus 80.6 0.78 1.7E-05 33.4 0.9 28 42-69 128-155 (327)
168 KOG0116|consensus 80.0 2.2 4.8E-05 32.1 3.1 35 4-39 331-365 (419)
169 PF10309 DUF2414: Protein of u 77.9 2.5 5.5E-05 23.5 2.2 28 32-59 34-62 (62)
170 KOG4676|consensus 77.4 0.38 8.3E-06 36.0 -1.5 65 4-70 53-123 (479)
171 KOG0112|consensus 76.7 0.61 1.3E-05 38.0 -0.6 63 4-66 414-518 (975)
172 KOG4285|consensus 73.9 12 0.00026 27.4 5.3 42 28-70 219-262 (350)
173 PF02714 DUF221: Domain of unk 72.9 4.1 9E-05 28.7 2.9 23 42-64 1-23 (325)
174 KOG2193|consensus 72.7 2.4 5.1E-05 32.3 1.6 64 7-70 5-69 (584)
175 PF07576 BRAP2: BRCA1-associat 71.5 21 0.00045 21.9 6.1 43 41-83 56-104 (110)
176 KOG2416|consensus 68.5 8.6 0.00019 30.5 3.8 50 4-59 482-531 (718)
177 KOG4019|consensus 67.1 11 0.00023 25.6 3.6 38 38-75 50-88 (193)
178 KOG0129|consensus 66.2 26 0.00056 27.2 5.9 20 38-57 412-431 (520)
179 PF03439 Spt5-NGN: Early trans 65.7 10 0.00022 21.9 3.0 39 28-66 32-71 (84)
180 PF01071 GARS_A: Phosphoribosy 64.0 42 0.00092 22.6 6.2 52 6-60 19-71 (194)
181 PRK09507 cspE cold shock prote 64.0 8.5 0.00018 21.5 2.4 51 28-79 4-60 (69)
182 KOG0128|consensus 63.7 3.6 7.9E-05 33.5 1.1 41 38-78 708-748 (881)
183 PRK10354 RNA chaperone/anti-te 63.4 9.6 0.00021 21.3 2.6 20 29-48 6-25 (70)
184 KOG0115|consensus 62.1 11 0.00023 26.9 3.1 47 15-61 6-94 (275)
185 KOG1995|consensus 62.0 5.8 0.00013 29.2 1.8 36 2-37 115-150 (351)
186 PF00313 CSD: 'Cold-shock' DNA 60.4 16 0.00035 19.6 3.1 21 30-50 3-23 (66)
187 PRK08559 nusG transcription an 60.1 11 0.00024 24.2 2.7 27 37-63 44-70 (153)
188 cd04458 CSP_CDS Cold-Shock Pro 57.2 13 0.00028 19.9 2.4 49 30-78 3-56 (65)
189 KOG2068|consensus 56.1 2.9 6.3E-05 30.5 -0.6 31 6-36 128-158 (327)
190 smart00738 NGN In Spt5p, this 55.9 13 0.00028 21.7 2.3 25 39-63 59-83 (106)
191 TIGR00405 L26e_arch ribosomal 55.6 14 0.0003 23.3 2.5 27 37-63 36-62 (145)
192 PRK10943 cold shock-like prote 55.1 15 0.00032 20.5 2.3 51 29-79 5-60 (69)
193 PF04847 Calcipressin: Calcipr 54.4 26 0.00057 23.4 3.8 32 5-36 33-66 (184)
194 PRK08559 nusG transcription an 52.0 21 0.00046 22.8 3.0 24 3-26 46-69 (153)
195 PRK09890 cold shock protein Cs 52.0 20 0.00043 20.0 2.6 20 29-48 6-25 (70)
196 PF05036 SPOR: Sporulation rel 51.6 30 0.00066 18.4 3.3 54 7-60 9-65 (76)
197 KOG4849|consensus 50.5 22 0.00048 26.6 3.2 35 2-36 123-157 (498)
198 PF08206 OB_RNB: Ribonuclease 50.0 13 0.00028 19.8 1.5 11 38-48 7-17 (58)
199 KOG3152|consensus 49.5 3.6 7.7E-05 29.2 -0.9 29 42-70 131-159 (278)
200 COG2039 Pcp Pyrrolidone-carbox 47.5 23 0.00051 24.2 2.7 29 47-75 14-42 (207)
201 PF08442 ATP-grasp_2: ATP-gras 46.8 58 0.0013 22.0 4.6 64 8-74 22-97 (202)
202 PRK15464 cold shock-like prote 46.3 32 0.00069 19.3 2.8 52 29-80 6-62 (70)
203 KOG2416|consensus 45.7 26 0.00056 28.0 3.1 27 39-65 481-507 (718)
204 KOG2253|consensus 45.0 10 0.00022 30.2 0.8 54 14-73 54-107 (668)
205 PRK14998 cold shock-like prote 44.5 30 0.00064 19.5 2.5 50 30-79 4-58 (73)
206 PRK15463 cold shock-like prote 41.9 41 0.00089 18.8 2.8 50 30-79 7-61 (70)
207 KOG4210|consensus 41.6 7.6 0.00016 27.7 -0.3 35 2-37 226-260 (285)
208 KOG4849|consensus 41.2 29 0.00064 26.0 2.6 35 38-72 123-157 (498)
209 TIGR02381 cspD cold shock doma 41.0 39 0.00084 18.6 2.6 49 30-79 4-58 (68)
210 PRK09937 stationary phase/star 40.4 41 0.0009 19.0 2.7 50 30-79 4-58 (74)
211 KOG0291|consensus 39.0 22 0.00048 29.1 1.9 56 32-88 373-436 (893)
212 KOG4676|consensus 37.3 37 0.0008 25.8 2.7 62 12-74 16-86 (479)
213 PF01782 RimM: RimM N-terminal 36.9 79 0.0017 17.7 4.3 30 34-64 49-78 (84)
214 COG0134 TrpC Indole-3-glycerol 36.8 30 0.00065 24.4 2.1 45 42-87 159-205 (254)
215 PRK10773 murF UDP-N-acetylmura 35.3 1.9E+02 0.0041 21.6 7.2 56 13-72 301-359 (453)
216 KOG0129|consensus 35.1 84 0.0018 24.5 4.3 23 38-60 302-327 (520)
217 COG2608 CopZ Copper chaperone 35.1 82 0.0018 17.3 4.0 29 16-48 20-48 (71)
218 PF05573 NosL: NosL; InterPro 34.0 43 0.00093 21.3 2.3 23 38-60 113-135 (149)
219 KOG3152|consensus 33.9 8.2 0.00018 27.5 -1.1 51 6-56 131-189 (278)
220 COG0150 PurM Phosphoribosylami 33.3 55 0.0012 24.2 3.0 25 38-62 298-322 (345)
221 PF03467 Smg4_UPF3: Smg-4/UPF3 32.4 50 0.0011 21.8 2.5 25 42-66 58-82 (176)
222 COG1278 CspC Cold shock protei 31.6 24 0.00051 19.9 0.7 43 37-80 11-59 (67)
223 PF11736 DUF3299: Protein of u 31.2 58 0.0012 21.0 2.6 18 70-87 76-93 (146)
224 PF13773 DUF4170: Domain of un 31.0 88 0.0019 17.7 3.0 30 45-74 31-60 (69)
225 TIGR00264 alpha-NAC-related pr 30.2 47 0.001 20.7 2.0 15 48-62 92-106 (116)
226 PF08156 NOP5NT: NOP5NT (NUC12 29.9 39 0.00085 18.7 1.4 19 41-59 46-64 (67)
227 PF09082 DUF1922: Domain of un 29.9 57 0.0012 18.5 2.1 37 28-66 24-60 (68)
228 PF15023 DUF4523: Protein of u 29.4 62 0.0013 21.3 2.4 27 38-64 124-150 (166)
229 PF12078 DUF3557: Domain of un 29.1 37 0.0008 21.1 1.4 25 54-78 4-30 (154)
230 KOG2318|consensus 28.2 70 0.0015 25.5 3.0 34 41-74 270-305 (650)
231 PF09648 YycI: YycH protein; 27.7 1.1E+02 0.0023 20.6 3.5 30 49-78 163-194 (228)
232 KOG2591|consensus 27.5 1.2E+02 0.0025 24.3 4.0 19 42-60 215-233 (684)
233 PRK10905 cell division protein 27.4 2.6E+02 0.0056 20.7 6.0 52 7-61 252-308 (328)
234 PF01123 Stap_Strp_toxin: Stap 27.4 1.4E+02 0.003 17.5 4.0 34 40-82 38-71 (87)
235 PRK13790 phosphoribosylamine-- 27.3 2.5E+02 0.0054 20.5 5.7 51 7-60 85-135 (379)
236 COG3831 Uncharacterized conser 27.0 1.1E+02 0.0023 18.1 3.0 43 17-59 11-58 (85)
237 KOG4285|consensus 26.6 90 0.002 23.0 3.1 29 5-34 234-262 (350)
238 PRK06369 nac nascent polypepti 26.0 62 0.0013 20.2 2.0 15 48-62 90-104 (115)
239 PF12599 DUF3768: Protein of u 25.9 1.5E+02 0.0032 17.4 3.5 25 63-88 43-68 (84)
240 PF14097 SpoVAE: Stage V sporu 24.4 51 0.0011 22.1 1.5 31 49-89 9-39 (180)
241 PHA02763 hypothetical protein; 24.2 1.1E+02 0.0024 18.3 2.7 49 22-70 37-91 (102)
242 PRK13828 rimM 16S rRNA-process 24.1 1.6E+02 0.0034 19.0 3.7 31 33-64 35-65 (161)
243 PF09162 Tap-RNA_bind: Tap, RN 23.9 1.3E+02 0.0029 17.7 3.1 30 42-71 46-77 (88)
244 PF01329 Pterin_4a: Pterin 4 a 23.3 1.3E+02 0.0028 17.5 3.0 23 48-70 6-29 (95)
245 PRK11634 ATP-dependent RNA hel 23.0 2.1E+02 0.0046 22.6 4.8 39 35-74 522-560 (629)
246 PF13689 DUF4154: Domain of un 22.9 2E+02 0.0043 17.9 5.3 55 7-62 30-92 (145)
247 PF00627 UBA: UBA/TS-N domain; 22.7 91 0.002 14.7 1.9 14 48-61 15-28 (37)
248 PF09180 ProRS-C_1: Prolyl-tRN 22.6 78 0.0017 17.4 1.8 32 38-69 10-41 (68)
249 KOG0862|consensus 22.6 44 0.00096 23.1 0.9 12 38-49 108-119 (216)
250 cd04493 BRCA2DBD_OB1 BRCA2DBD_ 22.1 1.3E+02 0.0027 18.3 2.7 27 60-86 48-74 (100)
251 PF11181 YflT: Heat induced st 21.9 1.1E+02 0.0023 18.1 2.4 28 45-72 5-32 (103)
252 PF14047 DCR: Dppa2/4 conserve 21.9 78 0.0017 17.8 1.7 18 71-88 17-34 (66)
253 KOG4574|consensus 21.9 70 0.0015 26.7 2.0 54 15-71 313-368 (1007)
254 PF14882 GHL12: Hypothetical g 21.5 87 0.0019 16.6 1.8 15 45-59 39-53 (53)
255 PF11310 DUF3113: Protein of u 21.5 1.5E+02 0.0032 16.2 2.6 28 31-58 9-36 (60)
256 PF02757 YLP: YLP motif; Inte 21.4 49 0.0011 11.4 0.5 7 80-86 2-8 (9)
257 PF14111 DUF4283: Domain of un 21.3 57 0.0012 20.1 1.2 37 37-74 53-89 (153)
258 TIGR02118 conserved hypothetic 21.3 78 0.0017 18.4 1.7 23 39-61 53-75 (100)
259 PRK14594 rimM 16S rRNA-process 21.0 1.8E+02 0.004 18.8 3.6 30 34-64 53-82 (166)
260 KOG0804|consensus 20.7 3.7E+02 0.0081 20.9 5.5 36 31-66 106-142 (493)
261 PRK00122 rimM 16S rRNA-process 20.5 2.1E+02 0.0045 18.5 3.8 30 34-64 56-85 (172)
262 PF14657 Integrase_AP2: AP2-li 20.4 90 0.002 15.6 1.7 15 46-60 24-38 (46)
263 KOG2187|consensus 20.4 50 0.0011 25.9 0.9 34 38-71 62-95 (534)
264 PRK11901 hypothetical protein; 20.4 3.6E+02 0.0079 19.9 5.6 24 40-63 283-308 (327)
265 COG2451 Ribosomal protein L35A 20.2 2.2E+02 0.0047 17.3 4.7 56 3-67 25-90 (100)
266 PF09341 Pcc1: Transcription f 20.2 1.3E+02 0.0028 16.6 2.4 19 41-59 4-22 (76)
No 1
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.74 E-value=2.1e-17 Score=125.55 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=72.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|+|+.
T Consensus 148 skGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~ 227 (612)
T TIGR01645 148 HKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA 227 (612)
T ss_pred cCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhh
Confidence 689999999999999999999999999999888741
Q ss_pred -----------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceeccCC
Q psy4383 38 -----------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYVSP 85 (89)
Q Consensus 38 -----------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~~~ 85 (89)
+||||||+|+++++|.+||.+|||..|+|+.|++...---+...+.|.
T Consensus 228 FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~pa 292 (612)
T TIGR01645 228 FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPA 292 (612)
T ss_pred cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCCCC
Confidence 689999999999999999999999999999998765543333444333
No 2
>KOG0148|consensus
Probab=99.68 E-value=2.4e-16 Score=109.57 Aligned_cols=69 Identities=29% Similarity=0.487 Sum_probs=65.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
+||||||.|.+.++|+.||..|||.=|.+|.|+-+|
T Consensus 103 sKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr 182 (321)
T KOG0148|consen 103 SKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMR 182 (321)
T ss_pred ccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHH
Confidence 789999999999999999999999999999888764
Q ss_pred ----------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 ----------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 ----------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
.+||+||+|++.|+|.+||.+|||.++.|+.++
T Consensus 183 ~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~Vk 231 (321)
T KOG0148|consen 183 QTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVR 231 (321)
T ss_pred HhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEE
Confidence 689999999999999999999999999999885
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=4.1e-16 Score=112.17 Aligned_cols=71 Identities=30% Similarity=0.442 Sum_probs=64.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.++++|+.|+..|+|..+.+++|+|.+
T Consensus 148 srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~ 227 (346)
T TIGR01659 148 SFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILR 227 (346)
T ss_pred cCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEee
Confidence 679999999999999999999999999999998862
Q ss_pred ------ccCeEEEEeCCHHHHHHHHHhcCCceecC--eEEEEE
Q psy4383 38 ------HKGYAFIQFSNPHDARSACLGEDGRTVLG--QTLVSY 72 (89)
Q Consensus 38 ------~rG~afV~F~~~~~a~~Ai~~l~g~~l~g--r~i~~~ 72 (89)
++|||||+|.++++|++||+.||+..+.+ ++|++.
T Consensus 228 d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 228 DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 56999999999999999999999999977 566554
No 4
>KOG0131|consensus
Probab=99.64 E-value=4.1e-16 Score=103.11 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=73.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++||||++|.++++|+.|++-||+..|+||+|+|+.
T Consensus 50 ~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i 129 (203)
T KOG0131|consen 50 HQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKI 129 (203)
T ss_pred ccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcc
Confidence 789999999999999999999999999999999972
Q ss_pred --------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee--eecceeccCC
Q psy4383 38 --------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ--YYNGCRYVSP 85 (89)
Q Consensus 38 --------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~--~~~~~~~~~~ 85 (89)
++|||||.|.+.+.+..||.+|||+.+..++|++-... ...|.+++++
T Consensus 130 ~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg~~~g~~ 187 (203)
T KOG0131|consen 130 MRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKGERHGTA 187 (203)
T ss_pred cccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCcccCCCH
Confidence 68999999999999999999999999999999765553 3445555543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.63 E-value=2.1e-15 Score=106.91 Aligned_cols=66 Identities=30% Similarity=0.500 Sum_probs=61.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+
T Consensus 44 s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~ 123 (352)
T TIGR01661 44 SLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILS 123 (352)
T ss_pred cceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEe
Confidence 679999999999999999999999999999998842
Q ss_pred ------ccCeEEEEeCCHHHHHHHHHhcCCceecCe
Q psy4383 38 ------HKGYAFIQFSNPHDARSACLGEDGRTVLGQ 67 (89)
Q Consensus 38 ------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr 67 (89)
++|||||+|.+.++|++||..|||..+.|+
T Consensus 124 ~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 124 DNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 589999999999999999999999999884
No 6
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=1.6e-14 Score=106.87 Aligned_cols=78 Identities=24% Similarity=0.456 Sum_probs=67.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+
T Consensus 336 ~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~ 415 (509)
T TIGR01642 336 SKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLT 415 (509)
T ss_pred cCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEec
Confidence 689999999999999999999999999998776521
Q ss_pred -----------------------------------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 -----------------------------------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 -----------------------------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
.+|++||+|.++++|++||.+|||.+++|+.|.
T Consensus 416 N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~ 495 (509)
T TIGR01642 416 NLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVV 495 (509)
T ss_pred cCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 248999999999999999999999999999995
Q ss_pred EEeeeeecceec
Q psy4383 71 SYKLQYYNGCRY 82 (89)
Q Consensus 71 ~~~~~~~~~~~~ 82 (89)
+.|+.-..|
T Consensus 496 ---~~~~~~~~~ 504 (509)
T TIGR01642 496 ---AAFYGEDCY 504 (509)
T ss_pred ---EEEeCHHHh
Confidence 455544444
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.58 E-value=1.7e-14 Score=102.28 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=32.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
+||||||+|.+.++|.+||.+|||..++||+|.+
T Consensus 310 skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V 343 (352)
T TIGR01661 310 CKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQV 343 (352)
T ss_pred ccceEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 6999999999999999999999999999999964
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=1.9e-14 Score=108.04 Aligned_cols=72 Identities=24% Similarity=0.439 Sum_probs=66.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..+++..+.|+.|+|.+
T Consensus 41 s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i 120 (562)
T TIGR01628 41 SLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKV 120 (562)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEe
Confidence 579999999999999999999999999999988852
Q ss_pred -------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 -------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 -------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|++.++|++||..|||..+.|+.|.+..
T Consensus 121 ~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~ 163 (562)
T TIGR01628 121 ATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGR 163 (562)
T ss_pred eecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEec
Confidence 689999999999999999999999999999997643
No 9
>KOG0145|consensus
Probab=99.55 E-value=1.6e-14 Score=100.48 Aligned_cols=73 Identities=26% Similarity=0.443 Sum_probs=66.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
+-|||||.|-+++||++|+..+||-.|..+.|+|+.
T Consensus 82 SLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~ 161 (360)
T KOG0145|consen 82 SLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILV 161 (360)
T ss_pred ccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhh
Confidence 569999999999999999999999999999999973
Q ss_pred ------ccCeEEEEeCCHHHHHHHHHhcCCceecCe--EEEEEee
Q psy4383 38 ------HKGYAFIQFSNPHDARSACLGEDGRTVLGQ--TLVSYKL 74 (89)
Q Consensus 38 ------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr--~i~~~~~ 74 (89)
+||.|||+|+.++||++||+.|||++..|. +|+++..
T Consensus 162 dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 162 DQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred hcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 899999999999999999999999999885 6765443
No 10
>KOG0124|consensus
Probab=99.55 E-value=6.5e-15 Score=106.28 Aligned_cols=72 Identities=29% Similarity=0.470 Sum_probs=67.7
Q ss_pred CcceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc-------------------------------------------
Q psy4383 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM------------------------------------------- 37 (89)
Q Consensus 1 ~~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~------------------------------------------- 37 (89)
.||||+||+|+-++.|+-|+..|||.++.||.|+|..
T Consensus 153 kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFE 232 (544)
T KOG0124|consen 153 KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE 232 (544)
T ss_pred cccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHH
Confidence 3899999999999999999999999999999999962
Q ss_pred ------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 ------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
|||||||+|.+..+..+||.+||-..|+|+-+++-
T Consensus 233 AFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 233 AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred hhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 89999999999999999999999999999988753
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=5.2e-14 Score=105.72 Aligned_cols=74 Identities=31% Similarity=0.546 Sum_probs=66.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceec----CeEeEEEc----------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVL----GQTLGISM---------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~----g~~i~v~~---------------------------------------- 37 (89)
++|||||+|.+.++|..|+..|+|..+. |+.+.|..
T Consensus 218 ~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 297 (562)
T TIGR01628 218 SRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTV 297 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCcc
Confidence 5799999999999999999999999998 77666631
Q ss_pred ---------------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 ---------------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ---------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
++|||||+|.+.++|++||.+|||..+.|++|.+..++
T Consensus 298 ~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 298 TDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 68999999999999999999999999999999775543
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.54 E-value=7.4e-14 Score=102.28 Aligned_cols=71 Identities=25% Similarity=0.430 Sum_probs=64.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+. |+|..+.|++|.|..
T Consensus 130 skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~ 208 (457)
T TIGR01622 130 SKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFE 208 (457)
T ss_pred cceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 58999999999999999996 999999998877631
Q ss_pred ------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 ------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|.+|+..|||..|.|++|.+..
T Consensus 209 ~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 209 PFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 579999999999999999999999999999997655
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.52 E-value=7.4e-14 Score=103.33 Aligned_cols=72 Identities=25% Similarity=0.366 Sum_probs=63.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE---------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS--------------------------------------------- 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~--------------------------------------------- 36 (89)
.+|||||+|.+.++|..|+. |+|..+.|+.|+|.
T Consensus 222 ~kg~afVeF~~~e~A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 300 (509)
T TIGR01642 222 EKNFAFLEFRTVEEATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYI 300 (509)
T ss_pred CCCEEEEEeCCHHHHhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEE
Confidence 47999999999999999995 99999988877652
Q ss_pred ----------------------------------cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 37 ----------------------------------MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 37 ----------------------------------~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++|||||+|.+.++|+.||..|||..|.|++|.+..+
T Consensus 301 ~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 301 GNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 06899999999999999999999999999999976544
No 14
>KOG0117|consensus
Probab=99.52 E-value=6.7e-14 Score=102.50 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=34.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.|-||||+|.++++|-+|++.|||..|+|..|.+.-+
T Consensus 292 ~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 292 PRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred ccceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 5789999999999999999999999999999987655
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=2.2e-13 Score=99.78 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=35.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceecc
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYV 83 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~ 83 (89)
..|++||+|.++++|++|+++|||++++|+.|.+ .|+....|-
T Consensus 409 ~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~---~~~~~~~~~ 451 (457)
T TIGR01622 409 SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITA---AFVVNDVYD 451 (457)
T ss_pred CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEE---EEEcHHHHH
Confidence 4699999999999999999999999999999964 444444443
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.47 E-value=4.4e-13 Score=101.76 Aligned_cols=73 Identities=21% Similarity=0.364 Sum_probs=63.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCC--ceecCeEeEEEc------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDG--RTVLGQTLGISM------------------------------------------ 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g--~~l~g~~i~v~~------------------------------------------ 37 (89)
++|||||+|.++++|..|+.+|+. ..+.|+.|.|.+
T Consensus 181 nRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G 260 (578)
T TIGR01648 181 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPG 260 (578)
T ss_pred cCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 589999999999999999988753 346777777652
Q ss_pred -------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 -------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 -------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++||||+|+++++|++||.+|||..|.|+.|.+...
T Consensus 261 ~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 261 KVERVKKIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5899999999999999999999999999999976544
No 17
>KOG0110|consensus
Probab=99.46 E-value=1.6e-13 Score=104.61 Aligned_cols=70 Identities=27% Similarity=0.630 Sum_probs=66.0
Q ss_pred CcceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc-------------------------------------------
Q psy4383 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM------------------------------------------- 37 (89)
Q Consensus 1 ~~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~------------------------------------------- 37 (89)
+|.|||||+|.++++|+.|+..|+|+.|.|+.|.|.+
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF 637 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF 637 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcc
Confidence 5779999999999999999999999999999888862
Q ss_pred ----------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 ----------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 ----------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
++|||||.|.+.++|.+|+.+|.++.|.||.+.
T Consensus 638 GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLV 686 (725)
T KOG0110|consen 638 GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLV 686 (725)
T ss_pred cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhh
Confidence 799999999999999999999999999999985
No 18
>KOG0123|consensus
Probab=99.43 E-value=5.5e-13 Score=96.78 Aligned_cols=69 Identities=29% Similarity=0.480 Sum_probs=65.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc-------------------------------------------c
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------H 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------~ 38 (89)
+-|||||.|.++++|++|+.+||-..+.|++|++.| +
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~ 115 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGS 115 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCc
Confidence 469999999999999999999999999999999974 7
Q ss_pred cCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 39 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 39 rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
+|| ||+|+++++|++||..|||..+.|++|-+
T Consensus 116 kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 116 KGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred eee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 999 99999999999999999999999999954
No 19
>KOG0145|consensus
Probab=99.38 E-value=2.3e-12 Score=89.81 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=32.3
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
+||||||.+.+.+||..||.+|||..+++|.+.+
T Consensus 319 CKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQV 352 (360)
T KOG0145|consen 319 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 352 (360)
T ss_pred ccceeEEEecchHHHHHHHHHhcCccccceEEEE
Confidence 8999999999999999999999999999998853
No 20
>KOG0147|consensus
Probab=99.38 E-value=1.6e-12 Score=96.95 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=43.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceeccCCCCC
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYVSPTPT 88 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~~~~~~ 88 (89)
+-|+.||.|.+.+.|..|+.+|||+|+.|+.|+ +.|.+-..|.+.+|+
T Consensus 489 s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~It---a~~~~~~~Y~~~FP~ 536 (549)
T KOG0147|consen 489 SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMIT---AKYLPLERYHSKFPD 536 (549)
T ss_pred CCceEEEecCcHHHHHHHHHHHhhhhhccceeE---EEEeehhhhhhhCCC
Confidence 559999999999999999999999999999995 778888889888886
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.36 E-value=4.2e-12 Score=94.46 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=65.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..|||..+.|++|.|.+
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~ 391 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQ 391 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccC
Confidence 479999999999999999999999999998776630
Q ss_pred -------------------------------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeE---EEE
Q psy4383 38 -------------------------------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQT---LVS 71 (89)
Q Consensus 38 -------------------------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~---i~~ 71 (89)
.+|+|||+|++.++|.+||..|||..|.++. ...
T Consensus 392 ~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~ 471 (481)
T TIGR01649 392 PPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYH 471 (481)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccce
Confidence 2699999999999999999999999999885 112
Q ss_pred Eeeeeec
Q psy4383 72 YKLQYYN 78 (89)
Q Consensus 72 ~~~~~~~ 78 (89)
+++.|+.
T Consensus 472 lkv~fs~ 478 (481)
T TIGR01649 472 LKVSFST 478 (481)
T ss_pred EEEEecc
Confidence 3466654
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.36 E-value=2.5e-12 Score=97.64 Aligned_cols=71 Identities=23% Similarity=0.427 Sum_probs=59.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceec-CeEeEEE--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVL-GQTLGIS-------------------------------------------- 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~-g~~i~v~-------------------------------------------- 36 (89)
+||||||+|.+.++|+.|+..||+..+. ++.+.|.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~ 177 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAAD 177 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccc
Confidence 7899999999999999999999998874 5554332
Q ss_pred --cccCeEEEEeCCHHHHHHHHHhcCC--ceecCeEEEEE
Q psy4383 37 --MHKGYAFIQFSNPHDARSACLGEDG--RTVLGQTLVSY 72 (89)
Q Consensus 37 --~~rG~afV~F~~~~~a~~Ai~~l~g--~~l~gr~i~~~ 72 (89)
.++|||||+|.++++|++|++.|+. ..+.|+.|.+.
T Consensus 178 kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 178 KKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred cCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 1589999999999999999998864 35789988653
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.34 E-value=8.2e-12 Score=92.93 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=59.3
Q ss_pred cceeEEEEecCHHHHHHHHhh--cCCceecCeEeEEEc------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLG--EDGRTVLGQTLGISM------------------------------------------ 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~--l~g~~l~g~~i~v~~------------------------------------------ 37 (89)
+||||||+|.+.++|+.|+.. +++..+.|++|.|++
T Consensus 37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~ 116 (481)
T TIGR01649 37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQI 116 (481)
T ss_pred CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHH
Confidence 579999999999999999986 478889998877741
Q ss_pred ----------------ccCeEEEEeCCHHHHHHHHHhcCCceecCe--EEEE
Q psy4383 38 ----------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQ--TLVS 71 (89)
Q Consensus 38 ----------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr--~i~~ 71 (89)
.+|+|||+|.+.++|.+|+..|||..|.+. .|.+
T Consensus 117 F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v 168 (481)
T TIGR01649 117 FNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKI 168 (481)
T ss_pred HhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEE
Confidence 346999999999999999999999999753 5543
No 24
>KOG0127|consensus
Probab=99.34 E-value=2.4e-12 Score=96.47 Aligned_cols=70 Identities=24% Similarity=0.441 Sum_probs=65.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
+||||||.|.-.+|++.|+....+..+.|+.|.|.+
T Consensus 46 ~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNL 125 (678)
T KOG0127|consen 46 KRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNL 125 (678)
T ss_pred ccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecC
Confidence 689999999999999999999999999999988862
Q ss_pred -------------------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 -------------------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 -------------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
-+|||||+|.+..+|.+||..+||..|+||+|.+
T Consensus 126 Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAV 190 (678)
T KOG0127|consen 126 PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAV 190 (678)
T ss_pred CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEE
Confidence 3599999999999999999999999999999964
No 25
>KOG0109|consensus
Probab=99.24 E-value=1.5e-11 Score=86.51 Aligned_cols=69 Identities=28% Similarity=0.470 Sum_probs=64.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE----------------------------------------cccCe
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS----------------------------------------MHKGY 41 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~----------------------------------------~~rG~ 41 (89)
-|.||||..++...+++||.+|+|-+|+|..|.|. +-|+|
T Consensus 35 vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy 114 (346)
T KOG0109|consen 35 VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDY 114 (346)
T ss_pred ecccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecce
Confidence 36899999999999999999999999999999996 26899
Q ss_pred EEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
+||.|+-.++|..||+.|||+.+.|+++.
T Consensus 115 ~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 115 AFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred eEEEEeeccchHHHHhcccccccccceee
Confidence 99999999999999999999999999993
No 26
>KOG0123|consensus
Probab=99.20 E-value=4.8e-11 Score=86.74 Aligned_cols=73 Identities=30% Similarity=0.536 Sum_probs=66.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|| ||+|++++.|+.|+..|||..+.++.|.|..
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~ 193 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS 193 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc
Confidence 5899 9999999999999999999999999998841
Q ss_pred -------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 -------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 -------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
++||+||.|.++++|..|+..|||....+..+-+...+
T Consensus 194 i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aq 244 (369)
T KOG0123|consen 194 ITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQ 244 (369)
T ss_pred ceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccc
Confidence 68999999999999999999999999998887665544
No 27
>KOG0147|consensus
Probab=99.08 E-value=4.9e-10 Score=83.84 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=67.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
+||.|||+|.+.+....||. |.|..+.|-+|.|+.
T Consensus 220 skgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~i 298 (549)
T KOG0147|consen 220 SKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGI 298 (549)
T ss_pred hcceeEEEEecccchhhHhh-hcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhh
Confidence 68999999999999999995 999999999999972
Q ss_pred --------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeee
Q psy4383 38 --------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQY 76 (89)
Q Consensus 38 --------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~ 76 (89)
++|||||+|.+.++|.+|+..|||..|.||.|+|--+.+
T Consensus 299 fepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 299 FEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred ccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 799999999999999999999999999999998765555
No 28
>KOG0106|consensus
Probab=99.07 E-value=1.1e-10 Score=79.37 Aligned_cols=71 Identities=31% Similarity=0.639 Sum_probs=64.4
Q ss_pred CcceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc-------------------------------------------
Q psy4383 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM------------------------------------------- 37 (89)
Q Consensus 1 ~~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~------------------------------------------- 37 (89)
+..||+||+|++..+|++|+..+||..+.+..+.|.+
T Consensus 33 mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~ 112 (216)
T KOG0106|consen 33 MKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVS 112 (216)
T ss_pred eecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhh
Confidence 4679999999999999999999999999998755531
Q ss_pred -------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 -------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 -------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
..+++||+|...++|.+||..|+|..+.++.|++
T Consensus 113 ~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 113 WQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred HHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 4699999999999999999999999999999976
No 29
>smart00361 RRM_1 RNA recognition motif.
Probab=99.04 E-value=4.8e-10 Score=63.63 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=32.3
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++|||||+|.++++|++|+..|||+.+.||+|.+
T Consensus 36 ~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 36 KRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 6899999999999999999999999999999963
No 30
>KOG0125|consensus
Probab=99.02 E-value=3.9e-10 Score=80.46 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=52.7
Q ss_pred HHHHHHHhhcCCceecCeEeEE-EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI-SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v-~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+-..++|+...|++++-.+|.- +-+||||||+|++.+||++|=.+|+|..+.||+|+|+-+
T Consensus 110 dpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 110 DPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 3456788888888888887763 459999999999999999999999999999999988654
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.01 E-value=2.9e-09 Score=81.52 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=32.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
+||||||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 245 sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~ 279 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 279 (612)
T ss_pred cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 68999999999999999999999999999999986
No 32
>KOG0144|consensus
Probab=99.00 E-value=7.1e-10 Score=81.45 Aligned_cols=73 Identities=26% Similarity=0.396 Sum_probs=58.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCc-eecCe--EeEEE------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGR-TVLGQ--TLGIS------------------------------------------ 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~-~l~g~--~i~v~------------------------------------------ 36 (89)
++|+|||.|.+.++|++|+..|+.. ++-|- +|.|.
T Consensus 75 s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~ 154 (510)
T KOG0144|consen 75 SKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDC 154 (510)
T ss_pred ccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchh
Confidence 6899999999999999999988764 35443 44443
Q ss_pred --------cccCeEEEEeCCHHHHHHHHHhcCCce-ecC--eEEEEEee
Q psy4383 37 --------MHKGYAFIQFSNPHDARSACLGEDGRT-VLG--QTLVSYKL 74 (89)
Q Consensus 37 --------~~rG~afV~F~~~~~a~~Ai~~l~g~~-l~g--r~i~~~~~ 74 (89)
.+||+|||.|.+.+.|..||++|||.. +.| .+|.|..+
T Consensus 155 ~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 155 YILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred hheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 189999999999999999999999984 445 46655444
No 33
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.95 E-value=5.1e-09 Score=56.66 Aligned_cols=42 Identities=33% Similarity=0.545 Sum_probs=34.4
Q ss_pred CeEeEEE--ccc-CeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 30 GQTLGIS--MHK-GYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 30 g~~i~v~--~~r-G~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
|....+. ..+ |+|||+|.+.++|++|++.|||..+.|++|.+
T Consensus 9 G~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V 53 (56)
T PF13893_consen 9 GEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKV 53 (56)
T ss_dssp S-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEE
T ss_pred ccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4344444 344 99999999999999999999999999999964
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.93 E-value=7.9e-09 Score=66.37 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=45.6
Q ss_pred cCHHHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 11 SNPHDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 11 ~~~~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
...++....++.-.|.+..-+.+... .++|||||+|.++++|++||+.|||..|+|++|.+...
T Consensus 45 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 45 GTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 33344444444445554444333322 36899999999999999999999999999999976544
No 35
>KOG0127|consensus
Probab=98.93 E-value=7.6e-09 Score=78.00 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=33.0
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
|||||.|....+|..|+..+||.++.||+|.|+|
T Consensus 159 GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 159 GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred ceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 9999999999999999999999999999999985
No 36
>KOG0120|consensus
Probab=98.91 E-value=2.8e-09 Score=79.79 Aligned_cols=81 Identities=26% Similarity=0.485 Sum_probs=71.9
Q ss_pred CcceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc-------------------------------------------
Q psy4383 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM------------------------------------------- 37 (89)
Q Consensus 1 ~~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~------------------------------------------- 37 (89)
+++||+|.+|.++...+.|+..|||..+.++.+.|+.
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~V 408 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVV 408 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcC
Confidence 4799999999999999999999999999999888861
Q ss_pred --------------------------------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 --------------------------------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 --------------------------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
..|-.||+|.+.+++++|+.+|+|++++||.+.
T Consensus 409 t~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVv--- 485 (500)
T KOG0120|consen 409 TPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVV--- 485 (500)
T ss_pred CHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEE---
Confidence 568899999999999999999999999999884
Q ss_pred eeeecceeccC
Q psy4383 74 LQYYNGCRYVS 84 (89)
Q Consensus 74 ~~~~~~~~~~~ 84 (89)
..||..-.|..
T Consensus 486 tsYydeDkY~~ 496 (500)
T KOG0120|consen 486 ASYYDEDKYHA 496 (500)
T ss_pred EEecCHHHhhc
Confidence 67776665543
No 37
>KOG4207|consensus
Probab=98.89 E-value=1.7e-09 Score=73.32 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=56.6
Q ss_pred EEEecCHHHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeee
Q psy4383 7 FIQFSNPHDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQY 76 (89)
Q Consensus 7 fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~ 76 (89)
-+.|.+.-+....+++..|.+-+..+.... -++|||||.|-+..+|++|+.+|||..|+|+.|+|--+.|
T Consensus 20 NLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 20 NLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 367888888899999888876555544433 3799999999999999999999999999999997544433
No 38
>KOG0148|consensus
Probab=98.86 E-value=5.1e-09 Score=73.32 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=43.4
Q ss_pred hhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 21 LGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 21 ~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
+.--|.+-+.|+|+.. .+||||||.|.+.++|++||.+|||.+|++|.|+-
T Consensus 83 F~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 83 FAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred hccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeec
Confidence 3456776677777653 48999999999999999999999999999999964
No 39
>smart00361 RRM_1 RNA recognition motif.
Probab=98.85 E-value=6.7e-09 Score=58.87 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=33.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
++|||||+|.+.++|..|+..|||+.+.|++|.++
T Consensus 36 ~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 36 KRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 68999999999999999999999999999999763
No 40
>KOG0146|consensus
Probab=98.83 E-value=4.3e-09 Score=73.90 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=31.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
+|.||||.|++..+|+.||.+|||..|+-+.|+
T Consensus 326 SKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 326 SKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred ccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 899999999999999999999999999998884
No 41
>KOG0111|consensus
Probab=98.77 E-value=3.8e-09 Score=72.39 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=35.1
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+||||||+|+..|+|..||..||+..|-||.|+++.+
T Consensus 51 HRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 51 HRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 8999999999999999999999999999999988665
No 42
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.75 E-value=1.5e-08 Score=56.04 Aligned_cols=33 Identities=33% Similarity=0.631 Sum_probs=31.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
++|+|||+|.++++|++|+..|||..++|++|+
T Consensus 38 ~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 38 SKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 689999999999999999999999999999984
No 43
>KOG0107|consensus
Probab=98.74 E-value=8.9e-09 Score=68.15 Aligned_cols=36 Identities=31% Similarity=0.559 Sum_probs=31.6
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
.+-|||||+|+++.+|+.|+..|||+.|.|..|+|.
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 367999999999999999999999999999888653
No 44
>KOG0144|consensus
Probab=98.72 E-value=2.7e-08 Score=73.33 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=32.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++.|+||.|++..+|.+||..|||..|+++++++
T Consensus 465 skcfgfvSyen~~sa~~aI~amngfQig~KrlkV 498 (510)
T KOG0144|consen 465 SKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKV 498 (510)
T ss_pred hhhcCcccccchhhhHHHHHHhcchhhccccceE
Confidence 7899999999999999999999999999999853
No 45
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.67 E-value=9.3e-08 Score=66.72 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=51.6
Q ss_pred EecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 9 QFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 9 ~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
.+...++.....+...|.+..-+.+....++|||||+|.++++|+.||. |||..|.||+|.+....
T Consensus 13 s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 13 SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 3455566666666677766555554444478999999999999999996 99999999999888874
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.65 E-value=6.4e-08 Score=62.17 Aligned_cols=38 Identities=21% Similarity=0.501 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|+|.+.+
T Consensus 75 ~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 68999999999999999999999999999999998743
No 47
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.64 E-value=8.9e-08 Score=51.71 Aligned_cols=35 Identities=34% Similarity=0.633 Sum_probs=33.1
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
+++|||+|.+.++|+.|+..|||..+.|++|+|++
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 38999999999999999999999999999999975
No 48
>KOG0125|consensus
Probab=98.62 E-value=3.5e-08 Score=70.59 Aligned_cols=35 Identities=31% Similarity=0.584 Sum_probs=34.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
|||||||.|++++||++|..+|+|+++.||+|.|+
T Consensus 135 SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 135 SKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 79999999999999999999999999999999997
No 49
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.60 E-value=1e-07 Score=68.87 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=47.5
Q ss_pred ecCHHHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 10 FSNPHDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
+...++....++...|.+..-+.+... .++|||||+|.++++|++||..|||..+.+++|.+.
T Consensus 117 ~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 117 QDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 344455566666666665555444321 378999999999999999999999999999999754
No 50
>KOG0111|consensus
Probab=98.52 E-value=7e-08 Score=66.24 Aligned_cols=36 Identities=25% Similarity=0.638 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
|||||||+|+..+||..||.+||+.+|+||.|+|++
T Consensus 51 HRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 51 HRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 799999999999999999999999999999999985
No 51
>smart00360 RRM RNA recognition motif.
Probab=98.49 E-value=3.4e-07 Score=49.43 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=31.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++|+|||+|.+.++|..|+..|++..+.|++|.+
T Consensus 37 ~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 37 SKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 4789999999999999999999999999998864
No 52
>KOG0105|consensus
Probab=98.48 E-value=2.9e-07 Score=61.81 Aligned_cols=64 Identities=25% Similarity=0.460 Sum_probs=58.3
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc---------------------------------------------
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM--------------------------------------------- 37 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~--------------------------------------------- 37 (89)
..||||+|+++.+|++||..-+|--+.|..++|.+
T Consensus 45 ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp 124 (241)
T KOG0105|consen 45 PPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLP 124 (241)
T ss_pred CCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCC
Confidence 47999999999999999999999999999999873
Q ss_pred ------------------------ccCeEEEEeCCHHHHHHHHHhcCCceecC
Q psy4383 38 ------------------------HKGYAFIQFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 38 ------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
..|.+.|+|.+.|+++=|+..|+.+++..
T Consensus 125 ~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 125 PSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred CCCchHHHHHHHHhhCCeeeeeeecccceeeeeeehhhHHHHHHhhccccccC
Confidence 57899999999999999999999987754
No 53
>KOG4207|consensus
Probab=98.47 E-value=1.2e-07 Score=64.50 Aligned_cols=38 Identities=32% Similarity=0.611 Sum_probs=35.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||-|.+..+|++|+..|+|.+|+|+.|.|++.+
T Consensus 54 sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 54 SRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 68999999999999999999999999999999998743
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.45 E-value=3.7e-07 Score=50.27 Aligned_cols=33 Identities=33% Similarity=0.641 Sum_probs=31.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLG 34 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~ 34 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.|+
T Consensus 38 ~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 38 SKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 579999999999999999999999999999874
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.44 E-value=3.5e-07 Score=51.02 Aligned_cols=33 Identities=33% Similarity=0.602 Sum_probs=30.9
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
++|+|||+|.++++|++|+..++|..+.|+.|.
T Consensus 38 ~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 38 SRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 479999999999999999999999999999884
No 56
>KOG0107|consensus
Probab=98.43 E-value=2e-07 Score=61.84 Aligned_cols=34 Identities=32% Similarity=0.689 Sum_probs=32.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v 35 (89)
..|||||+|+++.||++|+..|+|+.++|..|.|
T Consensus 46 PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 46 PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 5799999999999999999999999999988876
No 57
>KOG0113|consensus
Probab=98.43 E-value=1.5e-06 Score=61.71 Aligned_cols=64 Identities=19% Similarity=0.332 Sum_probs=48.2
Q ss_pred EEecCHHHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 8 IQFSNPHDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 8 V~f~~~~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
+.|.+.++-..-.+...|-+-.-+.+.- ..++|||||+|+++.++..|-++.+|.+|+|+.|.|
T Consensus 109 LnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 109 LNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 4566666666666656665444444432 248999999999999999999999999999999853
No 58
>smart00362 RRM_2 RNA recognition motif.
Probab=98.42 E-value=7.7e-07 Score=48.24 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=31.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++|+|||+|.+.++|++|+..++|..+.|++|.+
T Consensus 38 ~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 38 SKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 3599999999999999999999999999999864
No 59
>KOG1548|consensus
Probab=98.41 E-value=1.7e-06 Score=62.42 Aligned_cols=72 Identities=22% Similarity=0.233 Sum_probs=65.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
.||=|.|.|-..+..+-|+.-|++..+.|+.|+|+.
T Consensus 182 lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk 261 (382)
T KOG1548|consen 182 LKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSK 261 (382)
T ss_pred ccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCcccccc
Confidence 367799999999999999999999999999999972
Q ss_pred ---------------------------------------------------ccCeEEEEeCCHHHHHHHHHhcCCceecC
Q psy4383 38 ---------------------------------------------------HKGYAFIQFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 38 ---------------------------------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
+.|.+-|.|.+.++|..+|+.|+|++++|
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg 341 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG 341 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecc
Confidence 68999999999999999999999999999
Q ss_pred eEEEEEe
Q psy4383 67 QTLVSYK 73 (89)
Q Consensus 67 r~i~~~~ 73 (89)
|.|..--
T Consensus 342 Rql~A~i 348 (382)
T KOG1548|consen 342 RQLTASI 348 (382)
T ss_pred eEEEEEE
Confidence 9996543
No 60
>KOG0131|consensus
Probab=98.35 E-value=9.1e-07 Score=59.03 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=36.9
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
.++||||++|.++++|+=||+-||+.+|.||+|++.++.
T Consensus 49 ~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 49 KHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred cccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 389999999999999999999999999999999998876
No 61
>PLN03213 repressor of silencing 3; Provisional
Probab=98.35 E-value=1e-06 Score=66.45 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=55.2
Q ss_pred EEecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCH--HHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 8 IQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNP--HDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 8 V~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~--~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
+.|...++-..+++.-.|.+..-..++-. .||||||+|.+. .++.+||..|||..++||.|++.++.
T Consensus 18 LSydVTEDDLravFSeFGsVkdVEIpRET-GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 18 LGESVGRDDLLKIFSPMGTVDAVEFVRTK-GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeccc-CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 45666777788888888887777666332 499999999987 78999999999999999999988773
No 62
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.34 E-value=2.1e-06 Score=59.40 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
.++-..-.+...|.+.+-+.+.....+|||||+|.++++++.||. |||..|.+++|.+-++.
T Consensus 18 TE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 18 TEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 344444445556665555555554567999999999999999996 99999999999887764
No 63
>KOG0122|consensus
Probab=98.28 E-value=9.7e-07 Score=61.13 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.2
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
.+||||||+|.++++|++||..|||.-++.-.|++
T Consensus 229 ~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 229 LSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred cccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 38999999999999999999999999999888754
No 64
>KOG0122|consensus
Probab=98.26 E-value=1.5e-06 Score=60.20 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=36.4
Q ss_pred CcceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 1 ~~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++||||||.|.+.++|..||..|||.-++.=.++|.|++
T Consensus 229 ~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 229 LSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred cccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 579999999999999999999999999999899998876
No 65
>smart00360 RRM RNA recognition motif.
Probab=98.25 E-value=2.5e-06 Score=45.97 Aligned_cols=35 Identities=31% Similarity=0.608 Sum_probs=32.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
++|+|||+|.+.++|..|+..+++..+.|+.+.|+
T Consensus 37 ~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 37 SKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 47899999999999999999999999999988763
No 66
>KOG0121|consensus
Probab=98.23 E-value=1.4e-06 Score=55.46 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=51.8
Q ss_pred EEEEecCHHHHHHHHhhcCC---ceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 6 AFIQFSNPHDARSACLGEDG---RTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g---~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
+-+.|.+.++-...++..-| +++.|=.-.-.-++||.||+|-+.++|+.|++-++|..++.++|++
T Consensus 42 gNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 42 GNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred eeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 56788888888888888877 3355522222237899999999999999999999999999999964
No 67
>KOG0130|consensus
Probab=98.22 E-value=3.5e-06 Score=54.12 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=38.2
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceeccC
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYVS 84 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~~ 84 (89)
.+|||.|+|++.++|+.||.+|||..|.|++|. +-|-|..|+.=++
T Consensus 113 ~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~-VDw~Fv~gp~~g~ 158 (170)
T KOG0130|consen 113 VKGYALVEYETLKEAQAAIDALNGAELLGQNVS-VDWCFVKGPERGK 158 (170)
T ss_pred ccceeeeehHhHHHHHHHHHhccchhhhCCcee-EEEEEecCCccCc
Confidence 799999999999999999999999999999994 4455665554333
No 68
>KOG0124|consensus
Probab=98.17 E-value=3.2e-06 Score=61.79 Aligned_cols=67 Identities=22% Similarity=0.358 Sum_probs=48.6
Q ss_pred EEEEecCHHHHHHHHhhcCCceecCeEeEEEc------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 6 AFIQFSNPHDARSACLGEDGRTVLGQTLGISM------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
|-|.|+-.+|..+-.+.-.|- .+.|..+| |||||||+|+=+|.|+-|+++|||..++||.|.+..-+
T Consensus 119 GSIsfEl~EDtiR~AF~PFGP---IKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 119 GSISFELREDTIRRAFDPFGP---IKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred eeeEEEechHHHHhhccCCCC---cceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 556676666665544433332 12333333 89999999999999999999999999999999775433
No 69
>smart00362 RRM_2 RNA recognition motif.
Probab=98.17 E-value=5.2e-06 Score=44.87 Aligned_cols=35 Identities=31% Similarity=0.584 Sum_probs=32.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
++|+|||+|.+.++|+.|+..++|..+.|+.+.|+
T Consensus 38 ~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 38 SKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 46999999999999999999999999999988763
No 70
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.14 E-value=7.1e-06 Score=44.55 Aligned_cols=34 Identities=32% Similarity=0.585 Sum_probs=31.7
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++|++||+|.+.++|+.|+..+++..+.|+.+.+
T Consensus 39 ~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v 72 (74)
T cd00590 39 SKGFAFVEFEDEEDAEKALEALNGKELGGRPLRV 72 (74)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3799999999999999999999999999999864
No 71
>KOG0121|consensus
Probab=98.12 E-value=8.9e-06 Score=51.80 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=36.1
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccCe
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGY 41 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~ 41 (89)
|||||+|.+.++|+.|++-++|+.|..++|.+.+.-||
T Consensus 79 GFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF 116 (153)
T KOG0121|consen 79 GFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGF 116 (153)
T ss_pred ceEEEEEecchhHHHHHHHhccCcccccceeeeccccc
Confidence 99999999999999999999999999999999887764
No 72
>KOG4208|consensus
Probab=98.12 E-value=5e-06 Score=56.27 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=34.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|++++.|+-|-..||+..+.++.|....+
T Consensus 91 SKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 91 SKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred cCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 8999999999999999999999999999999965544
No 73
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.11 E-value=1.3e-05 Score=52.91 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=44.9
Q ss_pred HHHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++....++...|....-+.... ..++|||||+|.++++|..|+..++|..+.|++|.+...
T Consensus 128 ~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 128 TEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 34444444545555433333222 247899999999999999999999999999999977664
No 74
>KOG0110|consensus
Probab=98.10 E-value=7.9e-06 Score=63.26 Aligned_cols=64 Identities=17% Similarity=0.352 Sum_probs=46.2
Q ss_pred EEecCHHHHHHHHhhcCCceecCeEeEEE------cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 8 IQFSNPHDARSACLGEDGRTVLGQTLGIS------MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 8 V~f~~~~~a~~Ai~~l~g~~l~g~~i~v~------~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
+.|.+..+-..-.+...|.++.-.+.... ++.|||||+|.+.++|+.|++.|+|+.|+|++|.+
T Consensus 523 lnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 523 LNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred CCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 34555555455555556665554333222 36699999999999999999999999999999953
No 75
>KOG4206|consensus
Probab=98.10 E-value=1.4e-05 Score=54.64 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=28.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
.+|-|||.|.+.+.|..|+.+|+|..++|++++++
T Consensus 51 mRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 51 MRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred ccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 36778888888888888888888888888877665
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.09 E-value=7.3e-06 Score=45.56 Aligned_cols=33 Identities=33% Similarity=0.613 Sum_probs=30.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLG 34 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~ 34 (89)
.+|+|||+|.+.++|+.|+..++|..+.|+.|+
T Consensus 38 ~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 38 SRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 479999999999999999999999999999874
No 77
>KOG0108|consensus
Probab=98.07 E-value=6.9e-06 Score=61.13 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=50.7
Q ss_pred EEEecCHHHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 7 FIQFSNPHDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 7 fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
=+-|.-.++...-+..--|-++.-|.+... ..+||||++|.+.++|+.|++.|||.++.||+|++....
T Consensus 25 nip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 25 NIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred CCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 344555556555555445555555444332 379999999999999999999999999999999876553
No 78
>KOG4205|consensus
Probab=98.06 E-value=1.6e-06 Score=61.98 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=32.9
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++||+||.|+++++.++++. +.-+.|.|+++.+..+
T Consensus 138 ~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 138 PRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred cccceeeEeccccccceecc-cceeeecCceeeEeec
Confidence 79999999999999999988 8999999999988666
No 79
>KOG0226|consensus
Probab=98.02 E-value=5.9e-06 Score=57.67 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=31.7
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
++||+||.|.+..++..|+++|||.-.+.|+|.
T Consensus 231 SkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 231 SKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred cccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 799999999999999999999999999999885
No 80
>KOG0149|consensus
Probab=97.98 E-value=1.5e-05 Score=54.95 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=49.7
Q ss_pred EEecCHHHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 8 IQFSNPHDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 8 V~f~~~~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
+.|++..+...--++--|.++..-+|... .+||||||+|.|.++|.+|.+.. .-.|+||+...
T Consensus 20 L~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNc 85 (247)
T KOG0149|consen 20 LAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANC 85 (247)
T ss_pred cccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCccccccccc
Confidence 35777778777778888888887777553 58999999999999999999854 45688887643
No 81
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.97 E-value=2.7e-05 Score=42.18 Aligned_cols=35 Identities=31% Similarity=0.619 Sum_probs=32.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
++|+|||+|.+.++|..|+..+++..+.|+.+.|.
T Consensus 39 ~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 39 SKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 37999999999999999999999999999998875
No 82
>KOG4208|consensus
Probab=97.97 E-value=6.9e-06 Score=55.60 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=34.5
Q ss_pred CcceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 1 ~~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
.|||||||+|++++.|.-|...||+..+.++.+.|.+
T Consensus 90 NSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 90 NSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 3799999999999999999999999999999998874
No 83
>KOG4212|consensus
Probab=97.95 E-value=3.7e-05 Score=57.36 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=32.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
+||.|.|+|.+++.+++|+..||...+.||+|+|.
T Consensus 85 ~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 85 ARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 57999999999999999999999999999999885
No 84
>KOG0113|consensus
Probab=97.95 E-value=1.7e-05 Score=56.49 Aligned_cols=36 Identities=31% Similarity=0.615 Sum_probs=34.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.++.++..|.+.-+|.+|.|+.|.|.+
T Consensus 142 skGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 142 SKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred ccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 689999999999999999999999999999999986
No 85
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.92 E-value=2e-05 Score=55.18 Aligned_cols=39 Identities=28% Similarity=0.552 Sum_probs=35.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccCe
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGY 41 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~ 41 (89)
++|||||+|.++++|+.|+. |||..+.|+.|.|.+...|
T Consensus 42 ~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 42 RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 47999999999999999996 9999999999999875543
No 86
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.83 E-value=3.8e-05 Score=50.73 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=35.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.+++..|+..++|..+.|+.+.|....
T Consensus 156 ~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 156 SRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred cCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 68999999999999999999999999999999998854
No 87
>KOG0130|consensus
Probab=97.83 E-value=1.3e-05 Score=51.54 Aligned_cols=36 Identities=28% Similarity=0.557 Sum_probs=34.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
.|||++|+|++.++|+.|+..+||..|.|.+|.|.|
T Consensus 113 ~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 113 VKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 589999999999999999999999999999999976
No 88
>KOG0109|consensus
Probab=97.80 E-value=1.9e-05 Score=56.19 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=41.8
Q ss_pred eecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 27 TVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 27 ~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
+-.|+++.+++-|.||||+.++...|+.||..|+|.+|.|..|.+..
T Consensus 24 e~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVea 70 (346)
T KOG0109|consen 24 EQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEA 70 (346)
T ss_pred HhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEe
Confidence 34677888999999999999999999999999999999999996543
No 89
>KOG0108|consensus
Probab=97.74 E-value=3.4e-05 Score=57.48 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
.+||||++|.+.++|+.|++.|||.++.|++++|.+..
T Consensus 59 ~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 59 PKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 58999999999999999999999999999999998743
No 90
>KOG4211|consensus
Probab=97.71 E-value=7.9e-05 Score=55.91 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=56.4
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE----------------------------------------------
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS---------------------------------------------- 36 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~---------------------------------------------- 36 (89)
.|=|||+|.++++.+.|++ .+...+..+=|.|-
T Consensus 49 sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL 127 (510)
T KOG4211|consen 49 SGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGL 127 (510)
T ss_pred CcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCC
Confidence 5779999999999999997 55555555544442
Q ss_pred ---------------cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 37 ---------------MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 37 ---------------~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.+.|-|||+|++.+.|++||. -|...|+.|-|.+.+.
T Consensus 128 ~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 128 EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred cccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 067899999999999999998 7888999999987554
No 91
>KOG0126|consensus
Probab=97.71 E-value=1.7e-05 Score=53.19 Aligned_cols=43 Identities=23% Similarity=0.403 Sum_probs=37.3
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecce
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGC 80 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~ 80 (89)
++||||..|++-.+---|+..|||.+|.||.|++--+.+|..+
T Consensus 76 SKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 76 SKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKKP 118 (219)
T ss_pred ccceEEEEecCccceEEEEeccCCceecceeEEeeecccccCC
Confidence 8999999999999999999999999999999988777665544
No 92
>KOG0120|consensus
Probab=97.71 E-value=2.6e-05 Score=58.85 Aligned_cols=69 Identities=32% Similarity=0.501 Sum_probs=60.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE---------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS--------------------------------------------- 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~--------------------------------------------- 36 (89)
.+.|+|++|.+.++|..++. +++....|.++.+.
T Consensus 222 ~~nfa~ie~~s~~~at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~ 300 (500)
T KOG0120|consen 222 EKNFAFIEFRSISEATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLY 300 (500)
T ss_pred cccceeEEecCCCchhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCc
Confidence 46899999999999999886 78877788766553
Q ss_pred ----------------------------cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 37 ----------------------------MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 37 ----------------------------~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
.++||+|.+|.+..-...|+..|||..+++++|.+
T Consensus 301 l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 301 LTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred cCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 08999999999999999999999999999999964
No 93
>KOG0117|consensus
Probab=97.67 E-value=0.00022 Score=53.24 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=39.6
Q ss_pred HHHhhcCCceecCeEeEEEc---ccCeEEEEeCCHHHHHHHHHhcCCceec-CeEEEE
Q psy4383 18 SACLGEDGRTVLGQTLGISM---HKGYAFIQFSNPHDARSACLGEDGRTVL-GQTLVS 71 (89)
Q Consensus 18 ~Ai~~l~g~~l~g~~i~v~~---~rG~afV~F~~~~~a~~Ai~~l~g~~l~-gr~i~~ 71 (89)
.-++.--|.++.-|.+...+ +||||||+|.+.++|++||+.||+..|. |+.|.+
T Consensus 101 vplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 101 VPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred HHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 33444455555555443322 7999999999999999999999999885 676643
No 94
>KOG0114|consensus
Probab=97.66 E-value=0.00016 Score=44.69 Aligned_cols=38 Identities=32% Similarity=0.446 Sum_probs=34.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
.+|-|||.|++..+|++|...|+|..+.++.+.+...|
T Consensus 56 TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 56 TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 68999999999999999999999999999999765443
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=97.62 E-value=7e-05 Score=56.79 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=33.7
Q ss_pred ceeEEEEecCH--HHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 3 KGYAFIQFSNP--HDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 3 ~Gf~fV~f~~~--~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
||||||+|... .++.+||..|||..+.|+.|+|+.-|
T Consensus 48 RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 48 RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 79999999987 67999999999999999999998643
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.62 E-value=0.00014 Score=43.18 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=30.9
Q ss_pred cCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecc
Q psy4383 29 LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNG 79 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~ 79 (89)
.|+.+.| +.|-|+|.|.+.+.|++|.+.|+|...-|++|. ++|.+.
T Consensus 31 GGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~---v~~~~~ 76 (90)
T PF11608_consen 31 GGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKIS---VSFSPK 76 (90)
T ss_dssp T--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--E---EESS--
T ss_pred CCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEE---EEEcCC
Confidence 5677777 578899999999999999999999999999996 555433
No 97
>KOG4206|consensus
Probab=97.59 E-value=9e-05 Score=50.69 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=40.4
Q ss_pred HhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeee
Q psy4383 20 CLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQY 76 (89)
Q Consensus 20 i~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~ 76 (89)
++.-.|+.++....+-...||-|||.|.+.+.|..|+.+|+|..+.|++++ +||
T Consensus 33 LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr---iqy 86 (221)
T KOG4206|consen 33 LFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR---IQY 86 (221)
T ss_pred HHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh---eec
Confidence 333344444333333334789999999999999999999999999999996 555
No 98
>KOG0126|consensus
Probab=97.59 E-value=2.1e-05 Score=52.78 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=34.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
|+||||++|++....--|+.+|||..+.||.|+|..
T Consensus 76 SKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 76 SKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 789999999999999999999999999999999974
No 99
>KOG1190|consensus
Probab=97.55 E-value=0.00033 Score=51.89 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=59.2
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc----------------------------------------------
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM---------------------------------------------- 37 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~---------------------------------------------- 37 (89)
--|.|+|.+...|+-|+..|+|..++|++|+|..
T Consensus 336 d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~Ppsa 415 (492)
T KOG1190|consen 336 DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSA 415 (492)
T ss_pred cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchh
Confidence 3489999999999999999999999999999962
Q ss_pred -----------------------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEE
Q psy4383 38 -----------------------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69 (89)
Q Consensus 38 -----------------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i 69 (89)
.+-++.+.+++.|+|..|+-.|+.+.++...+
T Consensus 416 tlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~h 482 (492)
T KOG1190|consen 416 TLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHH 482 (492)
T ss_pred heeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCce
Confidence 45689999999999999999999999987744
No 100
>KOG4661|consensus
Probab=97.54 E-value=0.00022 Score=55.00 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCCceecCeEeEEEc---ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceec
Q psy4383 14 HDARSACLGEDGRTVLGQTLGISM---HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRY 82 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~~---~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~ 82 (89)
.....+|+...|+++..+++.-.. .+.||||+|.+.++|.++|..|+-+.|-||.|.|.++..-.++..
T Consensus 419 AtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp~Gkk 490 (940)
T KOG4661|consen 419 ATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEPGGKK 490 (940)
T ss_pred hhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCccccc
Confidence 344668888899999888776443 478999999999999999999999999999999988876555443
No 101
>KOG4212|consensus
Probab=97.53 E-value=0.00027 Score=52.88 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=35.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
+||+|.|+|.++|.+++|++.||-..+.||+|.++.-+
T Consensus 85 ~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 85 ARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 79999999999999999999999999999999887654
No 102
>KOG0226|consensus
Probab=97.51 E-value=4.8e-05 Score=53.18 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=33.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++||+||.|.++.++..|+++|||+.+..++|+.+-
T Consensus 231 SkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 231 SKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 689999999999999999999999999999998754
No 103
>KOG1457|consensus
Probab=97.45 E-value=0.00048 Score=47.68 Aligned_cols=28 Identities=25% Similarity=0.153 Sum_probs=24.8
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecC
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLG 30 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g 30 (89)
+-+||+.|.+.++|..|+..|||..++-
T Consensus 77 ~pvaFatF~s~q~A~aamnaLNGvrFDp 104 (284)
T KOG1457|consen 77 KPVAFATFTSHQFALAAMNALNGVRFDP 104 (284)
T ss_pred cceEEEEecchHHHHHHHHHhcCeeecc
Confidence 3589999999999999999999988754
No 104
>KOG0105|consensus
Probab=97.39 E-value=0.00028 Score=47.62 Aligned_cols=46 Identities=30% Similarity=0.454 Sum_probs=37.4
Q ss_pred cCeEeEEEc-----ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 29 LGQTLGISM-----HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 29 ~g~~i~v~~-----~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+|++..|.+ .-+||||+|++..+|+.||..-||..++|..|++...
T Consensus 30 yg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 30 YGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred hcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 445554543 2469999999999999999999999999999976544
No 105
>KOG0146|consensus
Probab=97.35 E-value=6.7e-05 Score=53.08 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=35.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
||.||||.|.++..++.||..|||..|.-|.++|++.|
T Consensus 326 SKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 326 SKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred ccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 68999999999999999999999999999999987643
No 106
>KOG0149|consensus
Probab=97.26 E-value=0.00025 Score=49.04 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=29.7
Q ss_pred CcceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 1 ~~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
.|||||||.|.+.+.|.+|+...|- +|+||+..|++
T Consensus 52 rskGyGfVTf~d~~aa~rAc~dp~p-iIdGR~aNcnl 87 (247)
T KOG0149|consen 52 RSKGYGFVTFRDAEAATRACKDPNP-IIDGRKANCNL 87 (247)
T ss_pred cccceeeEEeecHHHHHHHhcCCCC-cccccccccch
Confidence 3799999999999999999986554 47888777764
No 107
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.21 E-value=0.00072 Score=46.98 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
.+|||||+|.++++++.|+. |+|..|.+++|.|..
T Consensus 43 t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~ 77 (243)
T PLN03121 43 YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITR 77 (243)
T ss_pred cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEe
Confidence 35899999999999999995 999999999998864
No 108
>KOG0114|consensus
Probab=97.03 E-value=0.00098 Score=41.20 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=31.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
.+|-|||.|++..+|..|+..|+|..++++.+.|.
T Consensus 56 TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 56 TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 36899999999999999999999999999888764
No 109
>KOG0106|consensus
Probab=97.02 E-value=0.00051 Score=47.01 Aligned_cols=41 Identities=32% Similarity=0.681 Sum_probs=35.9
Q ss_pred cCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEE
Q psy4383 29 LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i 69 (89)
+|+...+.+..||+||+|++..+|..|+..+||..+.|..+
T Consensus 25 yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~ 65 (216)
T KOG0106|consen 25 YGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERL 65 (216)
T ss_pred ccccccceeecccceeccCchhhhhcccchhcCceecceee
Confidence 34455666788999999999999999999999999999884
No 110
>KOG4209|consensus
Probab=96.86 E-value=0.0023 Score=44.19 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=31.2
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++||+||+|.+.+..++|+. |||..|.|+.|.+
T Consensus 142 ~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 142 PKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred cceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 68999999999999999999 9999999998854
No 111
>KOG1190|consensus
Probab=96.75 E-value=0.0052 Score=45.74 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=31.2
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
.+--|.|.|.|...|+-|+..|+|..|-|++|++
T Consensus 334 kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrv 367 (492)
T KOG1190|consen 334 KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRV 367 (492)
T ss_pred CCcceeeeecchhHHHHHHHHhhcceecCceEEE
Confidence 3457999999999999999999999999999975
No 112
>KOG2202|consensus
Probab=96.65 E-value=0.00086 Score=46.84 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.3
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
-+|-++|.|..+++|++|+..|||.++.|++|-.
T Consensus 109 l~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~a 142 (260)
T KOG2202|consen 109 LVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHA 142 (260)
T ss_pred hhhhhhhhcccHHHHHHHHHHHcCccccCCccee
Confidence 3688999999999999999999999999999953
No 113
>KOG0132|consensus
Probab=96.61 E-value=0.0042 Score=49.23 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=33.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc----------------ccCeEEEEeCCHHHHHHHHH
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM----------------HKGYAFIQFSNPHDARSACL 57 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~----------------~rG~afV~F~~~~~a~~Ai~ 57 (89)
++|.|||.+...++|.+|+.+|+...+..+.|++.| ..|+.+|=++...++.+|++
T Consensus 456 ~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 456 PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 456666666666666666666666666666666654 34555565555555555553
No 114
>KOG1456|consensus
Probab=96.54 E-value=0.019 Score=42.58 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=31.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
.-|-|.|++.|..+.++|+..||+..+-|.+|.+
T Consensus 324 k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 324 KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred ccceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 4589999999999999999999999999999865
No 115
>KOG1457|consensus
Probab=96.52 E-value=0.0078 Score=41.80 Aligned_cols=29 Identities=24% Similarity=0.133 Sum_probs=26.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecC
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
++-+||+.|.+..+|..|+.+|||..++=
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNGvrFDp 104 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNGVRFDP 104 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcCeeecc
Confidence 45799999999999999999999999973
No 116
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.42 E-value=0.004 Score=37.66 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=27.3
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecC
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
+.|||||.|.+++.|.+-.+.++|+.+..
T Consensus 44 N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 44 NLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 68999999999999999999999999974
No 117
>KOG0415|consensus
Probab=96.41 E-value=0.0058 Score=44.92 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=41.4
Q ss_pred HHHHHhhcCCceecCeEeEEEc---ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 16 ARSACLGEDGRTVLGQTLGISM---HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 16 a~~Ai~~l~g~~l~g~~i~v~~---~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
...-|+.--|...+-.+|+... +--||||+|++.+++++|.-.|++..|++|.|-|
T Consensus 255 DLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 255 DLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred chhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 3444555555555554444322 4569999999999999999999999999999954
No 118
>KOG0132|consensus
Probab=96.39 E-value=0.0078 Score=47.79 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=34.9
Q ss_pred EeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 32 TLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 32 ~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
.|.+..++|+|||.+.++++|.+|+.+|+..++.++.|++
T Consensus 450 Si~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki 489 (894)
T KOG0132|consen 450 SIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKI 489 (894)
T ss_pred eEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEE
Confidence 3344458999999999999999999999999999999853
No 119
>KOG1996|consensus
Probab=96.27 E-value=0.0048 Score=44.30 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=32.8
Q ss_pred EEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceec
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRY 82 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~ 82 (89)
.||+|++.++|.+|+-.|||+.++||.+. +-|||-..|
T Consensus 332 iFveF~r~e~aiKA~VdlnGRyFGGr~v~---A~Fyn~ekf 369 (378)
T KOG1996|consen 332 IFVEFERVESAIKAVVDLNGRYFGGRVVS---ACFYNLEKF 369 (378)
T ss_pred eeeeeccHHHHHHHHHhcCCceecceeee---heeccHHhh
Confidence 79999999999999999999999999874 666665544
No 120
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.27 E-value=0.0072 Score=35.92 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=28.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
+.+-|.|.|.+++.|++|.+.|+|.-+.|..|.|++.
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 3567999999999999999999999999999999875
No 121
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.14 E-value=0.021 Score=37.01 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=37.2
Q ss_pred cCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 29 LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
.|..+-|++-.+-=+|+|.+-++|.+|+. |+|.++.|+.|.+
T Consensus 60 ~GevvLvRfv~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 60 YGEVVLVRFVGDTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp CS-ECEEEEETTCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCceEEEEEeCCeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 66788888888899999999999999999 9999999998864
No 122
>KOG0415|consensus
Probab=95.91 E-value=0.0055 Score=45.02 Aligned_cols=44 Identities=18% Similarity=0.380 Sum_probs=37.5
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEe
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQF 46 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F 46 (89)
-.||||+|++.++++.|.++|+...+..+.|-|.++...+=|.|
T Consensus 281 LqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk~k~ 324 (479)
T KOG0415|consen 281 LQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSKVKY 324 (479)
T ss_pred hheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhhhhc
Confidence 46999999999999999999999999999999987654444444
No 123
>KOG1456|consensus
Probab=95.86 E-value=0.041 Score=40.83 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=63.5
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc---------------------------------------------
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM--------------------------------------------- 37 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~--------------------------------------------- 37 (89)
.|=|.|++.+..+.++|+.-||+..+.|..|.|.+
T Consensus 325 ~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~ 404 (494)
T KOG1456|consen 325 PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQP 404 (494)
T ss_pred cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccC
Confidence 47789999999999999999999999999888752
Q ss_pred -----------------------------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCe---EEEEEe
Q psy4383 38 -----------------------------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQ---TLVSYK 73 (89)
Q Consensus 38 -----------------------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr---~i~~~~ 73 (89)
..--|.++|++.++|-.||..+|...+.+. ---..+
T Consensus 405 Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilK 484 (494)
T KOG1456|consen 405 PSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILK 484 (494)
T ss_pred CcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeee
Confidence 123489999999999999999999988763 222345
Q ss_pred eeeecceec
Q psy4383 74 LQYYNGCRY 82 (89)
Q Consensus 74 ~~~~~~~~~ 82 (89)
|-|+.+.+|
T Consensus 485 lcfsts~~~ 493 (494)
T KOG1456|consen 485 LCFSTSKHM 493 (494)
T ss_pred eeecccccC
Confidence 656655443
No 124
>KOG4209|consensus
Probab=95.83 E-value=0.011 Score=40.79 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=33.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
+|||+||+|.+.+..+.|+. |||..+.++.+.|..
T Consensus 142 ~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 142 PKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 68999999999999999999 999999999998875
No 125
>KOG0153|consensus
Probab=95.70 E-value=0.025 Score=41.32 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=32.2
Q ss_pred eEeEEEcccCeEEEEeCCHHHHHHHHHh-cCCceecCeEEEEE
Q psy4383 31 QTLGISMHKGYAFIQFSNPHDARSACLG-EDGRTVLGQTLVSY 72 (89)
Q Consensus 31 ~~i~v~~~rG~afV~F~~~~~a~~Ai~~-l~g~~l~gr~i~~~ 72 (89)
+.|.+...+|+|||+|.+.++|+.|... +|-..|+|+.|.+.
T Consensus 256 rsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 256 RSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred eeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 3555666889999999999999988754 55557789888654
No 126
>KOG0533|consensus
Probab=95.46 E-value=0.033 Score=38.83 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=34.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
+.|.|=|.|...++|..|++.+||..++|+++.+..+.
T Consensus 123 s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 123 SLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 67999999999999999999999999999998776653
No 127
>KOG4661|consensus
Probab=95.41 E-value=0.017 Score=45.00 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=33.1
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
+.||||.+.+..+|..+|..|+.++|.|+.|.|..
T Consensus 447 RCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 447 RCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 57999999999999999999999999999999974
No 128
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.38 E-value=0.022 Score=34.41 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=26.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLG 30 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g 30 (89)
+.|||||.|.+++.+..-...++|..+..
T Consensus 44 N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 44 NLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 57999999999999999999999998853
No 129
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.36 E-value=0.037 Score=40.61 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=27.7
Q ss_pred EEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
.||+|.+.|+|+++|.+.||..++||.|+
T Consensus 168 vYITy~~kedAarcIa~vDgs~~DGr~lk 196 (480)
T COG5175 168 VYITYSTKEDAARCIAEVDGSLLDGRVLK 196 (480)
T ss_pred EEEEecchHHHHHHHHHhccccccCceEe
Confidence 59999999999999999999999999985
No 130
>KOG0151|consensus
Probab=95.11 E-value=0.025 Score=44.76 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=40.2
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE---EeeeeecceeccCC
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS---YKLQYYNGCRYVSP 85 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~---~~~~~~~~~~~~~~ 85 (89)
.+.+|||.|-+..+|++|++.|+|..+.+..+.. ..++..+..-|+||
T Consensus 218 ~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~ip~~p~~ipp 268 (877)
T KOG0151|consen 218 ERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAVPIPNIPIYIPP 268 (877)
T ss_pred ccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccccccCCccccCCC
Confidence 5678999999999999999999999999988854 23357777777776
No 131
>KOG2314|consensus
Probab=94.99 E-value=0.036 Score=42.89 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=31.3
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecC-eEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLG-QTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~g-r~i~~~~~ 74 (89)
++||.|++|.+..+|+.|+++|||..|+- +...+..+
T Consensus 104 tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 104 TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLF 141 (698)
T ss_pred eeeEEEEEecChhhHHHHHHhcccceecccceEEeehh
Confidence 79999999999999999999999999985 44444443
No 132
>KOG1365|consensus
Probab=94.79 E-value=0.005 Score=45.61 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=33.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
..|-|||+|.+.|+|..|....+.+....|-|.++.-+
T Consensus 323 PSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 323 PSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred cChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 57899999999999999999999888889999887654
No 133
>KOG4210|consensus
Probab=94.75 E-value=0.019 Score=40.80 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=30.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||+|.|.+..+++.++.. +...+.++++.+.
T Consensus 226 ~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 226 SKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred hhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 789999999999999999998 9999999988643
No 134
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.64 E-value=0.12 Score=31.36 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=28.7
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
...+--|+|+++.+|++||+ .||..+.|..+.
T Consensus 53 ~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 53 GGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred CCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 56789999999999999999 999999997664
No 135
>KOG4454|consensus
Probab=94.49 E-value=0.022 Score=39.45 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=54.0
Q ss_pred eEEEEecCHHHHHHHHhhcCCceecCeEeEEEc----------------------------------------ccCeEEE
Q psy4383 5 YAFIQFSNPHDARSACLGEDGRTVLGQTLGISM----------------------------------------HKGYAFI 44 (89)
Q Consensus 5 f~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~----------------------------------------~rG~afV 44 (89)
||||.|.++....-|+.-|||..+.+..+.+.+ .+.++|+
T Consensus 51 Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~ 130 (267)
T KOG4454|consen 51 FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFV 130 (267)
T ss_pred eeeeecccccchhhhhhhcccchhccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccch
Confidence 999999999999999999999999999888763 5678888
Q ss_pred EeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 45 QFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 45 ~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
.+......-.|+..-++..+.-+++.
T Consensus 131 ~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 131 TYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 88887777778776666666555553
No 136
>KOG4660|consensus
Probab=94.22 E-value=0.018 Score=44.02 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=31.1
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
.+|..||+|-|..+|+.|+++|+++.+.|+.|.
T Consensus 111 ~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 111 KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 689999999999999999999999999999874
No 137
>KOG4211|consensus
Probab=94.18 E-value=0.11 Score=39.53 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=42.8
Q ss_pred HHHHHhhcCCceecCeEeEEE--cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 16 ARSACLGEDGRTVLGQTLGIS--MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 16 a~~Ai~~l~g~~l~g~~i~v~--~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++.+.-+.+..|..-.+... ...|-|||+|.+++++++||+ .|-..+..|-|.|.+.
T Consensus 24 ~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 24 EKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred HHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 344444455555554222221 367999999999999999999 8999999999998887
No 138
>KOG4454|consensus
Probab=93.98 E-value=0.059 Score=37.41 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=35.1
Q ss_pred cCeEeEEEc-------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 29 LGQTLGISM-------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 29 ~g~~i~v~~-------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
.|-+++|-+ .+ ||||.|.++.+..-|+.-|||..+.++.|.
T Consensus 33 aGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 33 AGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred cCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 455666665 34 999999999999999999999999999984
No 139
>KOG2314|consensus
Probab=93.86 E-value=0.069 Score=41.41 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=29.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceec-CeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVL-GQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~-g~~i~v~ 36 (89)
.+||.|++|.+.++|+.|++.+||..+. .+...|+
T Consensus 104 tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 104 TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred eeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 4799999999999999999999998874 4455554
No 140
>KOG1548|consensus
Probab=93.81 E-value=0.065 Score=39.23 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=42.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceeccC
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYVS 84 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~~ 84 (89)
-+|=|.+.|-.+++..-||+-||+..+.|+.|+|-.++|...+.|-+
T Consensus 182 lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~ 228 (382)
T KOG1548|consen 182 LKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDA 228 (382)
T ss_pred ccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCc
Confidence 68999999999999999999999999999999999999977766643
No 141
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.66 E-value=0.15 Score=33.10 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=28.6
Q ss_pred EEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 6 AFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
-+|.|.+-+.|.+|+. |+|.+++|+.+.|+.
T Consensus 73 mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 73 MWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp EEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred EEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 4799999999999998 999999999999985
No 142
>KOG0128|consensus
Probab=93.59 E-value=0.03 Score=44.87 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=51.5
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE--------------------------------cccCeEEEEeCCHH
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS--------------------------------MHKGYAFIQFSNPH 50 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~--------------------------------~~rG~afV~F~~~~ 50 (89)
||+||++|..++++..|+...++....-..+.++ .++|-++|.|.++.
T Consensus 709 rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea 788 (881)
T KOG0128|consen 709 RGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEA 788 (881)
T ss_pred ccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcc
Confidence 6999999999999999997444332222222221 27899999999999
Q ss_pred HHHHHHHhcCCceecCeEEE
Q psy4383 51 DARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 51 ~a~~Ai~~l~g~~l~gr~i~ 70 (89)
++.++..++++..+.-+.+.
T Consensus 789 ~~s~~~~s~d~~~~rE~~~~ 808 (881)
T KOG0128|consen 789 DASRKVASVDVAGKRENNGE 808 (881)
T ss_pred hhhhhcccchhhhhhhcCcc
Confidence 99999999998888766553
No 143
>KOG4307|consensus
Probab=93.49 E-value=0.21 Score=39.78 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCceecCeEeEEE-----cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 15 DARSACLGEDGRTVLGQTLGIS-----MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 15 ~a~~Ai~~l~g~~l~g~~i~v~-----~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
+.++.+.-.++.++.--.|.++ +..|-+-|.|++.++|..|...|++++|..|+|.+.
T Consensus 880 ~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 880 TLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred cHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3455566566666555455544 367999999999999999999999999999998653
No 144
>KOG4205|consensus
Probab=93.48 E-value=0.044 Score=39.50 Aligned_cols=36 Identities=14% Similarity=0.412 Sum_probs=29.9
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++||+||+|.+.++...+|. ..-++|+|+.|.....
T Consensus 47 srgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 47 SRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred cccccceecCCCcchheeec-ccccccCCccccceec
Confidence 78999999999999988887 6677888888865443
No 145
>KOG4660|consensus
Probab=93.01 E-value=0.042 Score=42.11 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=30.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v 35 (89)
++|.+||+|.|..+|+.|++.|+++++.|+.|+.
T Consensus 111 ~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 111 KRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 5788999999999999999999999999988774
No 146
>KOG0153|consensus
Probab=92.86 E-value=0.17 Score=37.04 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=33.3
Q ss_pred cceeEEEEecCHHHHHHHHhhc-CCceecCeEeEEEcccC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGE-DGRTVLGQTLGISMHKG 40 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l-~g~~l~g~~i~v~~~rG 40 (89)
.++.|||+|.+.+.|+.|..+. +-..+.|..|+|.|.++
T Consensus 263 ~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 263 RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 4688999999999999987554 66678999999999887
No 147
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.67 E-value=0.24 Score=28.02 Aligned_cols=45 Identities=13% Similarity=0.382 Sum_probs=26.4
Q ss_pred ecCeEe-EEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 28 VLGQTL-GISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 28 l~g~~i-~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
+.++.| .+++...|+||+-.. +.|+.++..|++..+.|+++.+..
T Consensus 28 i~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 28 IPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp B-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred CCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 344444 577788999999876 478999999999999999997654
No 148
>KOG0116|consensus
Probab=92.03 E-value=0.69 Score=34.72 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=39.8
Q ss_pred HHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 17 RSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 17 ~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.+..++-.|-+..++..... ...+||||+|.+.++++.||.+- -..|+++++.+..-
T Consensus 305 l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 305 LEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEK 364 (419)
T ss_pred HHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEec
Confidence 44444556655555443322 12289999999999999999954 88889999976554
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=91.51 E-value=0.25 Score=30.09 Aligned_cols=41 Identities=15% Similarity=0.324 Sum_probs=24.7
Q ss_pred eEeEEEcccC--eEEEEeCCHHHHHHHHHhcCCc-----eecCeEEEE
Q psy4383 31 QTLGISMHKG--YAFIQFSNPHDARSACLGEDGR-----TVLGQTLVS 71 (89)
Q Consensus 31 ~~i~v~~~rG--~afV~F~~~~~a~~Ai~~l~g~-----~l~gr~i~~ 71 (89)
.+-.|.+.+| -|+|+|.+.++|+.|+..+.-. .+.+..+++
T Consensus 27 ~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 27 EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 5556777776 7999999999999999876554 445544443
No 150
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=91.30 E-value=0.44 Score=25.39 Aligned_cols=28 Identities=18% Similarity=0.498 Sum_probs=23.1
Q ss_pred cCeEeEEEcc--cCeEEEEeCCHHHHHHHH
Q psy4383 29 LGQTLGISMH--KGYAFIQFSNPHDARSAC 56 (89)
Q Consensus 29 ~g~~i~v~~~--rG~afV~F~~~~~a~~Ai 56 (89)
.|+....+.. ..+.+|.|.++.+|++||
T Consensus 24 fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 24 FGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 5666666665 789999999999999995
No 151
>KOG2193|consensus
Probab=90.66 E-value=0.033 Score=41.89 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=55.5
Q ss_pred CcceeEEEEecCHHHHHHHHhhcCCce-ecCeEeEEEc------------------------------------------
Q psy4383 1 MHKGYAFIQFSNPHDARSACLGEDGRT-VLGQTLGISM------------------------------------------ 37 (89)
Q Consensus 1 ~~~Gf~fV~f~~~~~a~~Ai~~l~g~~-l~g~~i~v~~------------------------------------------ 37 (89)
++.||+||.+.+..-|..|+..++|+. +.|+++.+..
T Consensus 35 ~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvn 114 (584)
T KOG2193|consen 35 VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN 114 (584)
T ss_pred eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc
Confidence 356999999999999999999999965 8999887751
Q ss_pred ---ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 ---HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ---~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
..-..=|+|.+.+.+..||..++|..+....+.+
T Consensus 115 t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~ 151 (584)
T KOG2193|consen 115 TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKV 151 (584)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhc
Confidence 0111224567788899999999999999887754
No 152
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.48 E-value=0.7 Score=25.98 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=26.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
..| =||.|.|.+||+++....||+.+-+-.+.
T Consensus 33 ~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 33 RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 345 58999999999999999999988876653
No 153
>KOG0533|consensus
Probab=89.37 E-value=0.53 Score=32.89 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=32.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
+.|-|=|.|...+||..|+..++|..++|+++.+.+
T Consensus 123 s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 123 SLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 457889999999999999999999999999988764
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.30 E-value=0.5 Score=34.90 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=29.4
Q ss_pred EEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 6 AFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
.||.|...+||.++|.+.+|..++||.|+..
T Consensus 168 vYITy~~kedAarcIa~vDgs~~DGr~lkat 198 (480)
T COG5175 168 VYITYSTKEDAARCIAEVDGSLLDGRVLKAT 198 (480)
T ss_pred EEEEecchHHHHHHHHHhccccccCceEeee
Confidence 3999999999999999999999999999986
No 155
>KOG1996|consensus
Probab=89.01 E-value=0.57 Score=33.94 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=27.7
Q ss_pred EEEEecCHHHHHHHHhhcCCceecCeEeEE
Q psy4383 6 AFIQFSNPHDARSACLGEDGRTVLGQTLGI 35 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v 35 (89)
-||+|...+.|..|+-.|||+.+.|+.+.-
T Consensus 332 iFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 332 IFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred eeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 499999999999999999999999998764
No 156
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=88.88 E-value=0.9 Score=27.54 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.6
Q ss_pred EEEEecCHHHHHHHHhhcCCceecCeEeE
Q psy4383 6 AFIQFSNPHDARSACLGEDGRTVLGQTLG 34 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~ 34 (89)
--|.|.++.+|++|+. .||+++.|..+.
T Consensus 57 i~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 57 IHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp EEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred EEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 4689999999999998 999999987654
No 157
>KOG2202|consensus
Probab=88.35 E-value=0.29 Score=34.46 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=31.2
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
.|=.||.|..+++|+.|+..||+.-+.|++|...+
T Consensus 110 ~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 110 VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred hhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 35579999999999999999999999999997754
No 158
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.57 E-value=1.4 Score=24.73 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=25.7
Q ss_pred EEEecCHHHHHHHHhhcCCceecCeEeEE
Q psy4383 7 FIQFSNPHDARSACLGEDGRTVLGQTLGI 35 (89)
Q Consensus 7 fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v 35 (89)
||.|.+.++|++.....+|+.+....+.+
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 89999999999999999999988776653
No 159
>KOG1995|consensus
Probab=87.13 E-value=0.37 Score=35.30 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=37.8
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecc
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNG 79 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~ 79 (89)
-.||-|-|.|+|...|+.||.-.+++.+.+.+|.+..+...+.
T Consensus 114 ~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 114 APKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRTG 156 (351)
T ss_pred CcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhccC
Confidence 3899999999999999999999999999999998777765443
No 160
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.73 E-value=0.84 Score=25.75 Aligned_cols=33 Identities=12% Similarity=0.387 Sum_probs=20.5
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
.-|+||+-... .++.++..|++..+.|+.++|+
T Consensus 40 ~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 40 DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp SS-EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45889998774 7899999999999999999886
No 161
>KOG0151|consensus
Probab=86.45 E-value=0.75 Score=36.82 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=33.0
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
+-.|||.|-+..|++.|+..|+|..++.+.+++.|.+
T Consensus 219 r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 219 RNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred cccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 3568999999999999999999999999999887643
No 162
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=85.51 E-value=4.2 Score=22.73 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=33.0
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecCeEeEE--EcccCeEEEEeCCHHHHHHHHH
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGI--SMHKGYAFIQFSNPHDARSACL 57 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v--~~~rG~afV~F~~~~~a~~Ai~ 57 (89)
.+++|.|.+..+|..|-+.+....+..+.+-+ .++.|+|+..--+.++.+.++.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~ 57 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKE 57 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHH
Confidence 47899999999999998877766666665432 2344444443333334444333
No 163
>KOG1365|consensus
Probab=85.24 E-value=2.3 Score=31.96 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=24.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i 69 (89)
..|-|||.|..+++|+.||. -|...++-|-|
T Consensus 205 pTGdAFvlfa~ee~aq~aL~-khrq~iGqRYI 235 (508)
T KOG1365|consen 205 PTGDAFVLFACEEDAQFALR-KHRQNIGQRYI 235 (508)
T ss_pred cccceEEEecCHHHHHHHHH-HHHHHHhHHHH
Confidence 56899999999999999998 45555555544
No 164
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=84.77 E-value=1.6 Score=24.49 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=25.9
Q ss_pred CeEEEEeCCHHHHHHHHHhcCCceecCeEE
Q psy4383 40 GYAFIQFSNPHDARSACLGEDGRTVLGQTL 69 (89)
Q Consensus 40 G~afV~F~~~~~a~~Ai~~l~g~~l~gr~i 69 (89)
.+.+|.|.+..+|.+|-+.|....+..+.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 468999999999999999998888877655
No 165
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.88 E-value=2.8 Score=28.06 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=27.7
Q ss_pred CeEEEEeCCHHHHHHHHHhcC--CceecCeEEEEEeee
Q psy4383 40 GYAFIQFSNPHDARSACLGED--GRTVLGQTLVSYKLQ 75 (89)
Q Consensus 40 G~afV~F~~~~~a~~Ai~~l~--g~~l~gr~i~~~~~~ 75 (89)
+=..|.|.+.++|..|...|+ +..+.|..+++...+
T Consensus 32 rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 32 RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 337889999999999999999 999999998876553
No 166
>KOG4307|consensus
Probab=81.25 E-value=2.5 Score=34.01 Aligned_cols=35 Identities=20% Similarity=0.501 Sum_probs=31.7
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
.|=|-|.|++.++|..|...++++.|..+++.+.+
T Consensus 909 TGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 909 TGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred ccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 46789999999999999999999999999998753
No 167
>KOG2068|consensus
Probab=80.58 E-value=0.78 Score=33.38 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=26.8
Q ss_pred EEEEeCCHHHHHHHHHhcCCceecCeEE
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTVLGQTL 69 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l~gr~i 69 (89)
++|+|+..++|..||...+|..++|+.+
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 8999999999999999999999999985
No 168
>KOG0116|consensus
Probab=79.99 E-value=2.2 Score=32.10 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=30.0
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
+||||+|.+..+++.|+. -+-..+.++.+.|...+
T Consensus 331 ~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 331 CFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 899999999999999997 44777899999987644
No 169
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=77.85 E-value=2.5 Score=23.46 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=19.6
Q ss_pred EeEEEc-ccCeEEEEeCCHHHHHHHHHhc
Q psy4383 32 TLGISM-HKGYAFIQFSNPHDARSACLGE 59 (89)
Q Consensus 32 ~i~v~~-~rG~afV~F~~~~~a~~Ai~~l 59 (89)
+.+|+| ..--+=|.|.+++.|.+||.+|
T Consensus 34 ~~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 34 PFRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred CceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 334544 3334668899999999999865
No 170
>KOG4676|consensus
Probab=77.43 E-value=0.38 Score=35.97 Aligned_cols=65 Identities=12% Similarity=0.205 Sum_probs=49.0
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
.-|||.|.++..+..|.. |..+++-++.+.|.+ ..-|||+.|.+-.....+|. -||..+..++++
T Consensus 53 RtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~-pdg~Lp~~~~lt 123 (479)
T KOG4676|consen 53 RTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLP-PDGVLPGDRPLT 123 (479)
T ss_pred eeEEEeccCCcceeHHhh-hccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccC-CCCccCCCCccc
Confidence 469999999988888876 777777777776653 44568888888777777776 677777666663
No 171
>KOG0112|consensus
Probab=76.74 E-value=0.61 Score=38.00 Aligned_cols=63 Identities=30% Similarity=0.424 Sum_probs=48.2
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecCeEeEEE------------------------------------------cccCe
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS------------------------------------------MHKGY 41 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~------------------------------------------~~rG~ 41 (89)
-|+||.|.+.+.+-.|...+.+..|..-.+++. ..--|
T Consensus 414 a~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~y 493 (975)
T KOG0112|consen 414 AYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPY 493 (975)
T ss_pred chhhhhhhccccCcccchhhcCCccccCcccccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcc
Confidence 378889998888888888777755432221111 13459
Q ss_pred EEEEeCCHHHHHHHHHhcCCceecC
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
++|.|++...|+.|...|.|..|++
T Consensus 494 ayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 494 AYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred eeeecccCccchhhHHHHhcCcCCC
Confidence 9999999999999999999999987
No 172
>KOG4285|consensus
Probab=73.94 E-value=12 Score=27.37 Aligned_cols=42 Identities=17% Similarity=0.346 Sum_probs=32.6
Q ss_pred ecCeEeEEEc-cc-CeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 28 VLGQTLGISM-HK-GYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 28 l~g~~i~v~~-~r-G~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
.+|.+++... ++ .+-.|+|.++-+|++||. -||+.|+|-.+.
T Consensus 219 ~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmi 262 (350)
T KOG4285|consen 219 RCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMI 262 (350)
T ss_pred hhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEE
Confidence 4555665433 33 489999999999999999 899999987663
No 173
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=72.92 E-value=4.1 Score=28.72 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=18.4
Q ss_pred EEEEeCCHHHHHHHHHhcCCcee
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTV 64 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l 64 (89)
|||+|++..+|+.|++.+.....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~ 23 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP 23 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC
Confidence 79999999999999886555544
No 174
>KOG2193|consensus
Probab=72.68 E-value=2.4 Score=32.31 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=40.9
Q ss_pred EEEecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCc-eecCeEEE
Q psy4383 7 FIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGR-TVLGQTLV 70 (89)
Q Consensus 7 fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~-~l~gr~i~ 70 (89)
|+.|.++...-.++..+.|.--.+-.=...+..||+||...+..-|.+|++.++|+ .+-|+.+.
T Consensus 5 yignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 5 YIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred cccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 34455554444455444442211111122357899999999999999999999998 45677664
No 175
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=71.48 E-value=21 Score=21.91 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=33.4
Q ss_pred eEEEEeCCHHHHHHHHHhcCCceecC------eEEEEEeeeeecceecc
Q psy4383 41 YAFIQFSNPHDARSACLGEDGRTVLG------QTLVSYKLQYYNGCRYV 83 (89)
Q Consensus 41 ~afV~F~~~~~a~~Ai~~l~g~~l~g------r~i~~~~~~~~~~~~~~ 83 (89)
-+.+.|.+.++|.+--...||+.+.. +.+-+..+++.....-.
T Consensus 56 mVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV~~Ve~~~~~~~~ 104 (110)
T PF07576_consen 56 MVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFVKSVEFTSSAEGA 104 (110)
T ss_pred EEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEEEEEEEEcccccc
Confidence 48899999999999999999999876 35555666766554433
No 176
>KOG2416|consensus
Probab=68.53 E-value=8.6 Score=30.48 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=32.9
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhc
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGE 59 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l 59 (89)
--|||.|.+.++|-.-...|||..+-....+ +=.+.|...++..+++..|
T Consensus 482 ShCyV~yss~eEA~atr~AlhnV~WP~sNPK------~L~adf~~~deld~hr~~l 531 (718)
T KOG2416|consen 482 SHCYVSYSSVEEAAATREALHNVQWPPSNPK------HLIADFVRADELDKHRNGL 531 (718)
T ss_pred cceeEecccHHHHHHHHHHHhccccCCCCCc------eeEeeecchhHHHHHhccc
Confidence 4588888888888888888888766432211 3456777777777665433
No 177
>KOG4019|consensus
Probab=67.12 E-value=11 Score=25.58 Aligned_cols=38 Identities=29% Similarity=0.272 Sum_probs=32.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCe-EEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQ-TLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr-~i~~~~~~ 75 (89)
+.+..-|.|.+.+.|+.|...+++..+.|. .+..+.+|
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 455566789999999999999999999998 88777775
No 178
>KOG0129|consensus
Probab=66.19 E-value=26 Score=27.23 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=18.7
Q ss_pred ccCeEEEEeCCHHHHHHHHH
Q psy4383 38 HKGYAFIQFSNPHDARSACL 57 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~ 57 (89)
++|-|-|+|.+..+=-+||.
T Consensus 412 PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCcceeeecccHHHHHHHh
Confidence 79999999999999999987
No 179
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=65.75 E-value=10 Score=21.89 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=26.4
Q ss_pred ecCeEeEEE-cccCeEEEEeCCHHHHHHHHHhcCCceecC
Q psy4383 28 VLGQTLGIS-MHKGYAFIQFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 28 l~g~~i~v~-~~rG~afV~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
+.-..+.+. --+||-||+=.+.++..+|++.+.+.....
T Consensus 32 l~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~~~ 71 (84)
T PF03439_consen 32 LNIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRGSR 71 (84)
T ss_dssp ----EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEEEC
T ss_pred CceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceeecc
Confidence 444444333 368999999999999999999888766554
No 180
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=63.95 E-value=42 Score=22.64 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=36.7
Q ss_pred EEEEecCHHHHHHHHhhcCCceecCeEeEE-EcccCeEEEEeCCHHHHHHHHHhcC
Q psy4383 6 AFIQFSNPHDARSACLGEDGRTVLGQTLGI-SMHKGYAFIQFSNPHDARSACLGED 60 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v-~~~rG~afV~F~~~~~a~~Ai~~l~ 60 (89)
.|..|.+.++|.+.+.+..... -.|+- ....|-|-+-..+.++|.+|++.+-
T Consensus 19 ~~~~f~~~~~A~~~l~~~~~p~---~ViKadGla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 19 KYKVFTDYEEALEYLEEQGYPY---VVIKADGLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp -EEEESSHHHHHHHHHHHSSSE---EEEEESSSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CeeEECCHHHHHHHHHhcCCCc---eEEccCCCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 4788999999999998776543 12221 1344455666699999999998874
No 181
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=63.95 E-value=8.5 Score=21.46 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=27.0
Q ss_pred ecCeEeEEEcccCeEEEEeCCHH-HH---HHHHHhcCC-c-eecCeEEEEEeeeeecc
Q psy4383 28 VLGQTLGISMHKGYAFIQFSNPH-DA---RSACLGEDG-R-TVLGQTLVSYKLQYYNG 79 (89)
Q Consensus 28 l~g~~i~v~~~rG~afV~F~~~~-~a---~~Ai~~l~g-~-~l~gr~i~~~~~~~~~~ 79 (89)
+.|+...-+-.||||||+=++-. +. ..+|.. +| . .-.|..+.....+-.+|
T Consensus 4 ~~G~Vk~f~~~kGyGFI~~~~g~~dvfvH~s~l~~-~g~~~l~~G~~V~f~~~~~~~G 60 (69)
T PRK09507 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQT-NGFKTLAEGQRVEFEITNGAKG 60 (69)
T ss_pred cceEEEEEeCCCCcEEEecCCCCeeEEEEeecccc-cCCCCCCCCCEEEEEEEECCCC
Confidence 34555555568999999876632 11 233332 22 2 34566676544444433
No 182
>KOG0128|consensus
Probab=63.70 E-value=3.6 Score=33.51 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=32.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeec
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYN 78 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~ 78 (89)
.||++++.|.+++++.+||...++..++...+.+-..++..
T Consensus 708 ~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf~g 748 (881)
T KOG0128|consen 708 FRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPFQG 748 (881)
T ss_pred cccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCCCC
Confidence 57999999999999999999777777765555555555554
No 183
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=63.44 E-value=9.6 Score=21.25 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=14.0
Q ss_pred cCeEeEEEcccCeEEEEeCC
Q psy4383 29 LGQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~ 48 (89)
.|+...-+-.+|||||+=++
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK10354 6 TGIVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEeCCCCcEEEecCC
Confidence 45455555679999998665
No 184
>KOG0115|consensus
Probab=62.09 E-value=11 Score=26.86 Aligned_cols=47 Identities=23% Similarity=0.226 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCceecCeEeEEEc------------------------------------------ccCeEEEEeCCHHHH
Q psy4383 15 DARSACLGEDGRTVLGQTLGISM------------------------------------------HKGYAFIQFSNPHDA 52 (89)
Q Consensus 15 ~a~~Ai~~l~g~~l~g~~i~v~~------------------------------------------~rG~afV~F~~~~~a 52 (89)
-|+.|-..|+++...++.+.|.+ +.+-++|+|.+.-.|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a 85 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNA 85 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhH
Confidence 35556667888888888777753 567799999999999
Q ss_pred HHHHHhcCC
Q psy4383 53 RSACLGEDG 61 (89)
Q Consensus 53 ~~Ai~~l~g 61 (89)
.+|+..++-
T Consensus 86 ~~a~rr~~~ 94 (275)
T KOG0115|consen 86 RKAARRCRE 94 (275)
T ss_pred HHHHHHhcc
Confidence 999988843
No 185
>KOG1995|consensus
Probab=62.03 E-value=5.8 Score=29.24 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=32.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
.||=|.|.|.++..|+.|+.-++++.+++.+|+|.+
T Consensus 115 ~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~ 150 (351)
T KOG1995|consen 115 PKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSL 150 (351)
T ss_pred cCCceeeeecChhhhhhhhhhhccccccCCCchhhh
Confidence 478899999999999999999999999998888864
No 186
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=60.40 E-value=16 Score=19.64 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=14.4
Q ss_pred CeEeEEEcccCeEEEEeCCHH
Q psy4383 30 GQTLGISMHKGYAFIQFSNPH 50 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~~~ 50 (89)
|..-.....+|||||+-++.+
T Consensus 3 G~V~~~~~~kgyGFI~~~~~~ 23 (66)
T PF00313_consen 3 GTVKWFDDEKGYGFITSDDGG 23 (66)
T ss_dssp EEEEEEETTTTEEEEEETTSS
T ss_pred EEEEEEECCCCceEEEEcccc
Confidence 334445567899999987743
No 187
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=60.08 E-value=11 Score=24.17 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=23.1
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCce
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRT 63 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~ 63 (89)
.-.||-||+.+..+++..+|+.+.+..
T Consensus 44 ~fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 44 ELKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred CCCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 368999999998899999999887753
No 188
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=57.19 E-value=13 Score=19.95 Aligned_cols=49 Identities=20% Similarity=0.113 Sum_probs=25.6
Q ss_pred CeEeEEEcccCeEEEEeCC-HHHH---HHHHHhc-CCceecCeEEEEEeeeeec
Q psy4383 30 GQTLGISMHKGYAFIQFSN-PHDA---RSACLGE-DGRTVLGQTLVSYKLQYYN 78 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~-~~~a---~~Ai~~l-~g~~l~gr~i~~~~~~~~~ 78 (89)
|+....+..+|||||.=++ .++. ..++..- ....-.|..+.....+..+
T Consensus 3 G~Vk~~~~~kGfGFI~~~~~g~diffh~~~~~~~~~~~~~~G~~V~f~~~~~~~ 56 (65)
T cd04458 3 GTVKWFDDEKGFGFITPDDGGEDVFVHISALEGDGFRSLEEGDRVEFELEEGDK 56 (65)
T ss_pred EEEEEEECCCCeEEEecCCCCcCEEEEhhHhhccCCCcCCCCCEEEEEEEECCC
Confidence 3344455679999998776 2222 2233322 2334456666554444433
No 189
>KOG2068|consensus
Probab=56.11 E-value=2.9 Score=30.50 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.9
Q ss_pred EEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 6 AFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
+||.|...++|..+|...+|.++.|+.++..
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 6999999999999999999999999986554
No 190
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=55.90 E-value=13 Score=21.71 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=21.0
Q ss_pred cCeEEEEeCCHHHHHHHHHhcCCce
Q psy4383 39 KGYAFIQFSNPHDARSACLGEDGRT 63 (89)
Q Consensus 39 rG~afV~F~~~~~a~~Ai~~l~g~~ 63 (89)
-||-||+++..++...+|..+.|..
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~v~ 83 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPGVR 83 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCCcc
Confidence 4999999998778889998888853
No 191
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=55.60 E-value=14 Score=23.28 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.2
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCce
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRT 63 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~ 63 (89)
.-.||-||+.+..++...+|..+.|..
T Consensus 36 ~fpGYvFV~~~~~~~~~~~i~~~~gv~ 62 (145)
T TIGR00405 36 SLKGYILVEAETKIDMRNPIIGVPHVR 62 (145)
T ss_pred CCCcEEEEEEECcHHHHHHHhCCCCEE
Confidence 468999999998889999998888753
No 192
>PRK10943 cold shock-like protein CspC; Provisional
Probab=55.08 E-value=15 Score=20.49 Aligned_cols=51 Identities=25% Similarity=0.228 Sum_probs=26.6
Q ss_pred cCeEeEEEcccCeEEEEeCCH-HHH---HHHHHhcC-CceecCeEEEEEeeeeecc
Q psy4383 29 LGQTLGISMHKGYAFIQFSNP-HDA---RSACLGED-GRTVLGQTLVSYKLQYYNG 79 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~-~~a---~~Ai~~l~-g~~l~gr~i~~~~~~~~~~ 79 (89)
.|+...-+-.||||||+=++- ++. ..||..-. ...-.|..+...-.+-.++
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~g~~dvFvH~s~l~~~g~~~l~~G~~V~f~~~~~~~g 60 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG 60 (69)
T ss_pred ceEEEEEeCCCCcEEEecCCCCeeEEEEhhHccccCCCCCCCCCEEEEEEEECCCC
Confidence 344444455799999987652 122 23444222 2234567776544444333
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=54.44 E-value=26 Score=23.41 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=26.7
Q ss_pred eEEEEecCHHHHHHHHhhcC--CceecCeEeEEE
Q psy4383 5 YAFIQFSNPHDARSACLGED--GRTVLGQTLGIS 36 (89)
Q Consensus 5 f~fV~f~~~~~a~~Ai~~l~--g~~l~g~~i~v~ 36 (89)
-..|.|.+.++|..|...++ +..+.|..+++-
T Consensus 33 Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~y 66 (184)
T PF04847_consen 33 RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVY 66 (184)
T ss_dssp EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE
T ss_pred EEEEEeCCHHHHHHHHHHhcccccccCCCceEEE
Confidence 36799999999999999998 999999988875
No 194
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=52.03 E-value=21 Score=22.85 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGR 26 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~ 26 (89)
+||-||+....+++..+++.+.+.
T Consensus 46 pGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 46 KGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred CcEEEEEEEChHHHHHHHhcCCCE
Confidence 699999999889999999877664
No 195
>PRK09890 cold shock protein CspG; Provisional
Probab=52.03 E-value=20 Score=20.00 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=14.2
Q ss_pred cCeEeEEEcccCeEEEEeCC
Q psy4383 29 LGQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~ 48 (89)
.|....-+-.||||||+=++
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK09890 6 TGLVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEECCCCcEEEecCC
Confidence 45444455679999998775
No 196
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=51.58 E-value=30 Score=18.40 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=31.1
Q ss_pred EEEecCHHHHHHHHhhcCCceecCeEeEEEcccC-e-EEE-EeCCHHHHHHHHHhcC
Q psy4383 7 FIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG-Y-AFI-QFSNPHDARSACLGED 60 (89)
Q Consensus 7 fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG-~-afV-~F~~~~~a~~Ai~~l~ 60 (89)
...|.+.+.|+..+.+|...-+......+....+ | .++ .|.+.++|++++..|.
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 4568899999988877754422222122222222 2 222 6789999999998876
No 197
>KOG4849|consensus
Probab=50.53 E-value=22 Score=26.64 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=27.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
+||||+|...+....+.-+.-|.-+++.|....|.
T Consensus 123 SKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 123 SKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 68888888888777777777778888888766553
No 198
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=50.02 E-value=13 Score=19.85 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=9.0
Q ss_pred ccCeEEEEeCC
Q psy4383 38 HKGYAFIQFSN 48 (89)
Q Consensus 38 ~rG~afV~F~~ 48 (89)
++|||||.-++
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 68999999987
No 199
>KOG3152|consensus
Probab=49.55 E-value=3.6 Score=29.23 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=26.6
Q ss_pred EEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
|.|+|.+-..|+.....||+..|+|++-+
T Consensus 131 GWvEF~~KrvAK~iAe~Lnn~~Iggkk~S 159 (278)
T KOG3152|consen 131 GWVEFISKRVAKRIAELLNNTPIGGKKKS 159 (278)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCCCC
Confidence 78999999999999999999999998654
No 200
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=47.49 E-value=23 Score=24.20 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 47 SNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 47 ~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
++..-++.|++.|||..++|-.|....++
T Consensus 14 ~~~NPs~e~vk~L~~~~i~g~~V~~~~lP 42 (207)
T COG2039 14 EPINPSWEAVKELNGRIIGGAEVKGRILP 42 (207)
T ss_pred CCCChHHHHHHhcCcccccCceEEEEEcC
Confidence 34567899999999999999998877775
No 201
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=46.84 E-value=58 Score=21.97 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=42.3
Q ss_pred EEecCHHHHHHHHhhcCCceecCeEeEEEc-----ccCeEEEEeCCHHHHHHHHHhcCCceec-------CeEEEEEee
Q psy4383 8 IQFSNPHDARSACLGEDGRTVLGQTLGISM-----HKGYAFIQFSNPHDARSACLGEDGRTVL-------GQTLVSYKL 74 (89)
Q Consensus 8 V~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-----~rG~afV~F~~~~~a~~Ai~~l~g~~l~-------gr~i~~~~~ 74 (89)
+.-.+++++..+...+.+.. -.++-++ .|+=|...-.+.++|..+.+.|=|..+. |.++..+-+
T Consensus 22 ~~a~s~eea~~~~~~l~~~~---~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlv 97 (202)
T PF08442_consen 22 VVATSPEEAREAAKELGGKP---LVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLV 97 (202)
T ss_dssp EEESSHHHHHHHHHHHTTSS---EEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEE
T ss_pred eecCCHHHHHHHHHHhCCCc---EEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEE
Confidence 33467889999888876542 1444443 3442333446799999999999999998 887765444
No 202
>PRK15464 cold shock-like protein CspH; Provisional
Probab=46.26 E-value=32 Score=19.31 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=28.5
Q ss_pred cCeEeEEEcccCeEEEEeCCH-HHH---HHHHHhcCC-ceecCeEEEEEeeeeecce
Q psy4383 29 LGQTLGISMHKGYAFIQFSNP-HDA---RSACLGEDG-RTVLGQTLVSYKLQYYNGC 80 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~-~~a---~~Ai~~l~g-~~l~gr~i~~~~~~~~~~~ 80 (89)
.|+...-+-.||||||+=++- ++. ..||+.-.- ....|..|.....+-.+|.
T Consensus 6 ~G~Vk~fn~~KGfGFI~~~~g~~DvFvH~s~l~~~g~~~l~~G~~V~f~v~~~~kG~ 62 (70)
T PRK15464 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 (70)
T ss_pred eEEEEEEECCCCeEEEccCCCCccEEEEehhehhcCCCCCCCCCEEEEEEEECCCCc
Confidence 344444556899999987662 222 344432222 2445777765555544443
No 203
>KOG2416|consensus
Probab=45.72 E-value=26 Score=27.96 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=24.6
Q ss_pred cCeEEEEeCCHHHHHHHHHhcCCceec
Q psy4383 39 KGYAFIQFSNPHDARSACLGEDGRTVL 65 (89)
Q Consensus 39 rG~afV~F~~~~~a~~Ai~~l~g~~l~ 65 (89)
|-.+||.|.+.++|..-+.+|+|..+-
T Consensus 481 KShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 481 KSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred hcceeEecccHHHHHHHHHHHhccccC
Confidence 556899999999999999999999884
No 204
>KOG2253|consensus
Probab=45.01 E-value=10 Score=30.24 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 14 HDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++....+-+..|.+...+.+. |||..|.++.....|+..+.-..++|+.+.++.
T Consensus 54 ~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 54 QEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred HHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 333444444455555444443 999999999999999999999999999885443
No 205
>PRK14998 cold shock-like protein CspD; Provisional
Probab=44.50 E-value=30 Score=19.55 Aligned_cols=50 Identities=22% Similarity=0.132 Sum_probs=24.8
Q ss_pred CeEeEEEcccCeEEEEeCCH-HHH---HHHHHhcC-CceecCeEEEEEeeeeecc
Q psy4383 30 GQTLGISMHKGYAFIQFSNP-HDA---RSACLGED-GRTVLGQTLVSYKLQYYNG 79 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~~-~~a---~~Ai~~l~-g~~l~gr~i~~~~~~~~~~ 79 (89)
|+...-+-.||||||.=++- ++. ..+|+.-. ...-.|..+...-.+-.+|
T Consensus 4 G~Vkwfn~~kGfGFI~~~~g~~dVFvH~s~l~~~g~~~l~~G~~V~f~~~~~~~G 58 (73)
T PRK14998 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKG 58 (73)
T ss_pred eEEEEEeCCCceEEEecCCCCccEEEEeeeecccCCCCCCCCCEEEEEEEECCCC
Confidence 44444455799999977652 121 12333222 2334566665544444333
No 206
>PRK15463 cold shock-like protein CspF; Provisional
Probab=41.90 E-value=41 Score=18.77 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=27.3
Q ss_pred CeEeEEEcccCeEEEEeCCH-HHH---HHHHHhc-CCceecCeEEEEEeeeeecc
Q psy4383 30 GQTLGISMHKGYAFIQFSNP-HDA---RSACLGE-DGRTVLGQTLVSYKLQYYNG 79 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~~-~~a---~~Ai~~l-~g~~l~gr~i~~~~~~~~~~ 79 (89)
|....-+-.||||||+=++- ++. ..||..- ....-.|..+.....+-.+|
T Consensus 7 G~Vk~fn~~kGfGFI~~~~g~~DvFvH~sal~~~g~~~l~~G~~V~f~v~~~~~G 61 (70)
T PRK15463 7 GIVKTFDGKSGKGLITPSDGRKDVQVHISALNLRDAEELTTGLRVEFCRINGLRG 61 (70)
T ss_pred EEEEEEeCCCceEEEecCCCCccEEEEehhhhhcCCCCCCCCCEEEEEEEECCCC
Confidence 44444455799999987662 222 2445433 22344577776654454444
No 207
>KOG4210|consensus
Probab=41.60 E-value=7.6 Score=27.66 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=29.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
.+||+||.|.+...+..++.. +...+.++++.+..
T Consensus 226 ~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 226 SKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred hhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 579999999999999999876 77888888777753
No 208
>KOG4849|consensus
Probab=41.21 E-value=29 Score=26.02 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=31.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
+||||.|...+..+.++-++-|.-++|-|+.-++.
T Consensus 123 SKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 123 SKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 89999999999999999999999999999876543
No 209
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=40.98 E-value=39 Score=18.63 Aligned_cols=49 Identities=27% Similarity=0.192 Sum_probs=26.2
Q ss_pred CeEeEEEcccCeEEEEeCCH-HHH---HHHHHhcCC--ceecCeEEEEEeeeeecc
Q psy4383 30 GQTLGISMHKGYAFIQFSNP-HDA---RSACLGEDG--RTVLGQTLVSYKLQYYNG 79 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~~-~~a---~~Ai~~l~g--~~l~gr~i~~~~~~~~~~ 79 (89)
|+..--+..||||||.=++- ++. ..||.. +| ..-.|..+.....+-.+|
T Consensus 4 G~Vk~f~~~kGfGFI~~~~g~~dvfvH~s~~~~-~g~~~l~~G~~V~f~~~~~~~G 58 (68)
T TIGR02381 4 GIVKWFNNAKGFGFICPEGVDGDIFAHYSTIQM-DGYRTLKAGQKVQFEVVQGPKG 58 (68)
T ss_pred eEEEEEeCCCCeEEEecCCCCccEEEEHHHhhh-cCCCCCCCCCEEEEEEEECCCC
Confidence 43444455799999987762 222 234432 23 234577776544444333
No 210
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=40.44 E-value=41 Score=19.02 Aligned_cols=50 Identities=22% Similarity=0.135 Sum_probs=24.2
Q ss_pred CeEeEEEcccCeEEEEeCCH-HHH---HHHHHhcC-CceecCeEEEEEeeeeecc
Q psy4383 30 GQTLGISMHKGYAFIQFSNP-HDA---RSACLGED-GRTVLGQTLVSYKLQYYNG 79 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~~-~~a---~~Ai~~l~-g~~l~gr~i~~~~~~~~~~ 79 (89)
|+...-+-.||||||+=++- ++. ..+|..-. ...-.|..+...-.+-.+|
T Consensus 4 G~Vkwfn~~KGfGFI~~~~gg~dVFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~G 58 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKG 58 (74)
T ss_pred eEEEEEeCCCCeEEEeeCCCCccEEEEEeeccccCCCCCCCCCEEEEEEEECCCC
Confidence 33333445799999976541 111 12333111 2344566665544444443
No 211
>KOG0291|consensus
Probab=39.00 E-value=22 Score=29.07 Aligned_cols=56 Identities=23% Similarity=0.479 Sum_probs=36.1
Q ss_pred EeEE-EcccCeEEEEeCCHHHHHHHHHhc-CCce-----ecCeEEEEEee-eeecceeccCCCCC
Q psy4383 32 TLGI-SMHKGYAFIQFSNPHDARSACLGE-DGRT-----VLGQTLVSYKL-QYYNGCRYVSPTPT 88 (89)
Q Consensus 32 ~i~v-~~~rG~afV~F~~~~~a~~Ai~~l-~g~~-----l~gr~i~~~~~-~~~~~~~~~~~~~~ 88 (89)
+++| +...||.||+|..+.++-.|++-. +|.. ++| .++.+-+ -|.|=--|.+|.|+
T Consensus 373 KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG-tVRAwDlkRYrNfRTft~P~p~ 436 (893)
T KOG0291|consen 373 KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG-TVRAWDLKRYRNFRTFTSPEPI 436 (893)
T ss_pred cEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC-eEEeeeecccceeeeecCCCce
Confidence 4444 357899999999999999888622 1221 122 2334444 36666778888885
No 212
>KOG4676|consensus
Probab=37.26 E-value=37 Score=25.80 Aligned_cols=62 Identities=10% Similarity=0.146 Sum_probs=40.7
Q ss_pred CHHHHHHHHhhcCCce-------ecC--eEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 12 NPHDARSACLGEDGRT-------VLG--QTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 12 ~~~~a~~Ai~~l~g~~-------l~g--~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++..+.+-|..|.|.. |++ ..+.+....-.+||-|.|..++..|.. |-.+.+-++.|.++..
T Consensus 16 spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 16 SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 3455556666655532 111 122222345579999999999988866 9999999998877654
No 213
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=36.91 E-value=79 Score=17.67 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=21.1
Q ss_pred EEEcccCeEEEEeCCHHHHHHHHHhcCCcee
Q psy4383 34 GISMHKGYAFIQFSNPHDARSACLGEDGRTV 64 (89)
Q Consensus 34 ~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l 64 (89)
.++.+.+..++.|+..++-+.|.. |.|..+
T Consensus 49 ~~~~~~~~~i~~~~gi~~r~~Ae~-l~g~~l 78 (84)
T PF01782_consen 49 SVRPHGKSLIVKFEGIDDREAAEA-LRGCEL 78 (84)
T ss_dssp EEEEETTEEEEEETT--SHHHHHT-TTT-EE
T ss_pred EEEEeCCEEEEEEcCCCCHHHHHh-hCCCEE
Confidence 345678999999999998888876 666654
No 214
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=36.76 E-value=30 Score=24.44 Aligned_cols=45 Identities=9% Similarity=0.179 Sum_probs=34.2
Q ss_pred EEEEeCCHHHHHHHHHhcCCcee--cCeEEEEEeeeeecceeccCCCC
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTV--LGQTLVSYKLQYYNGCRYVSPTP 87 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l--~gr~i~~~~~~~~~~~~~~~~~~ 87 (89)
+.|+.-|+++.+.|++ ++...| ++|-+.-..+......+..|.-|
T Consensus 159 ~LVEVh~~eEl~rAl~-~ga~iIGINnRdL~tf~vdl~~t~~la~~~p 205 (254)
T COG0134 159 VLVEVHNEEELERALK-LGAKIIGINNRDLTTLEVDLETTEKLAPLIP 205 (254)
T ss_pred eEEEECCHHHHHHHHh-CCCCEEEEeCCCcchheecHHHHHHHHhhCC
Confidence 8899999999999999 777777 67777766666666655555554
No 215
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=35.31 E-value=1.9e+02 Score=21.58 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCceecCeEeEEEcccCeEEEE--eC-CHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGISMHKGYAFIQ--FS-NPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~--F~-~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
.++..+++..+.+ +.||.-.+....|.-+|. |. ++++.+.||+.+... .+|+|.++
T Consensus 301 ~~~i~~~L~~~~~--~~gR~e~v~~~~g~~iIDDsYn~nP~s~~aaL~~l~~~--~~r~i~Vl 359 (453)
T PRK10773 301 LDAVKAGLANLKA--VPGRLFPIQLAEGQLLLDDSYNANVGSMTAAAQVLAEM--PGYRVMVV 359 (453)
T ss_pred HHHHHHHHHhCCC--CCCceeEEECCCCeEEEEcCCCCCHHHHHHHHHHHHhC--CCCEEEEE
Confidence 3445555554443 355544444445666665 54 489999999999764 56666443
No 216
>KOG0129|consensus
Probab=35.14 E-value=84 Score=24.53 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.5
Q ss_pred ccC---eEEEEeCCHHHHHHHHHhcC
Q psy4383 38 HKG---YAFIQFSNPHDARSACLGED 60 (89)
Q Consensus 38 ~rG---~afV~F~~~~~a~~Ai~~l~ 60 (89)
++| |+|+-|+++.+.+.-|.++.
T Consensus 302 pkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 302 PKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred CCCcccEEEEEecchHHHHHHHHHHh
Confidence 677 99999999999988877654
No 217
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=35.08 E-value=82 Score=17.32 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=22.4
Q ss_pred HHHHHhhcCCceecCeEeEEEcccCeEEEEeCC
Q psy4383 16 ARSACLGEDGRTVLGQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 16 a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~ 48 (89)
-..|+.+++| ...+.|++.+|-+.|.|++
T Consensus 20 V~~al~~v~g----v~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 20 VEKALEEVDG----VASVDVDLEKGTATVTFDS 48 (71)
T ss_pred HHHHHhcCCC----eeEEEEEcccCeEEEEEcC
Confidence 4556666776 4667788889999999988
No 218
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=33.98 E-value=43 Score=21.30 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=17.1
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcC
Q psy4383 38 HKGYAFIQFSNPHDARSACLGED 60 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~ 60 (89)
..|...+-|.+.++|++-.++-.
T Consensus 113 pMg~~~~aF~~~~~A~~F~~~~G 135 (149)
T PF05573_consen 113 PMGPDLIAFASKEDAEAFAKEHG 135 (149)
T ss_dssp TTS--EEEES-HHHHHHHHHHTE
T ss_pred CCCCcccccCCHHHHHHHHHHcC
Confidence 56899999999999999988653
No 219
>KOG3152|consensus
Probab=33.94 E-value=8.2 Score=27.46 Aligned_cols=51 Identities=8% Similarity=0.192 Sum_probs=34.5
Q ss_pred EEEEecCHHHHHHHHhhcCCceecCeEeE--------EEcccCeEEEEeCCHHHHHHHH
Q psy4383 6 AFIQFSNPHDARSACLGEDGRTVLGQTLG--------ISMHKGYAFIQFSNPHDARSAC 56 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~--------v~~~rG~afV~F~~~~~a~~Ai 56 (89)
|.|+|.+...|......||++.+.|+.-. +..--+|-.+.....-+.+.|+
T Consensus 131 GWvEF~~KrvAK~iAe~Lnn~~Iggkk~S~~~~dlWNmKYLprFKW~hLTEqiayE~av 189 (278)
T KOG3152|consen 131 GWVEFISKRVAKRIAELLNNTPIGGKKKSPFRDDLWNMKYLPRFKWVHLTEQIAYENAV 189 (278)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCCCCchHHhhhhhhhccCcchHHHHHHHHHHHHH
Confidence 67899999999999999999999997432 1122345555444444444444
No 220
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=33.31 E-value=55 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=23.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCc
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGR 62 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~ 62 (89)
+.|.|||-...+++++++++.|+++
T Consensus 298 NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 298 NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cCccceEEEEcHHHHHHHHHHHHhc
Confidence 7899999999999999999999986
No 221
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=32.43 E-value=50 Score=21.75 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.3
Q ss_pred EEEEeCCHHHHHHHHHhcCCceecC
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
|||.|.+.++...-...++|..+.+
T Consensus 58 aYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 58 AYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp EEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred EEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 9999999999999999999987754
No 222
>COG1278 CspC Cold shock proteins [Transcription]
Probab=31.63 E-value=24 Score=19.91 Aligned_cols=43 Identities=30% Similarity=0.258 Sum_probs=25.2
Q ss_pred cccCeEEEEeCCH-HHH---HHHHHhcCC-c-eecCeEEEEEeeeeecce
Q psy4383 37 MHKGYAFIQFSNP-HDA---RSACLGEDG-R-TVLGQTLVSYKLQYYNGC 80 (89)
Q Consensus 37 ~~rG~afV~F~~~-~~a---~~Ai~~l~g-~-~l~gr~i~~~~~~~~~~~ 80 (89)
-.+|||||+-++- +|. ..||+ ++| + ...|+++..-..+-.++.
T Consensus 11 ~~KGfGFI~p~~G~~DvFVH~Sai~-~~g~~~L~eGQ~V~f~~~~g~kgp 59 (67)
T COG1278 11 ATKGFGFITPEDGGKDVFVHISAIQ-RAGFRTLREGQKVEFEVEQGRKGP 59 (67)
T ss_pred CCCcceEcCCCCCCcCEEEEeeeec-cCCCcccCCCCEEEEEEecCCCCC
Confidence 3789999988774 232 23444 233 3 335888876555554444
No 223
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=31.20 E-value=58 Score=20.97 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=14.2
Q ss_pred EEEeeeeecceeccCCCC
Q psy4383 70 VSYKLQYYNGCRYVSPTP 87 (89)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~ 87 (89)
...-++|.+.|-++||-|
T Consensus 76 eFlLvP~~gaC~h~PpPp 93 (146)
T PF11736_consen 76 EFLLVPYFGACIHVPPPP 93 (146)
T ss_pred EEEEeccCCcCcCCCCCC
Confidence 445558999999998876
No 224
>PF13773 DUF4170: Domain of unknown function (DUF4170)
Probab=30.98 E-value=88 Score=17.74 Aligned_cols=30 Identities=20% Similarity=0.177 Sum_probs=24.3
Q ss_pred EeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 45 QFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 45 ~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
-|.+.++|.+|-++.-.++.++-.++...+
T Consensus 31 ~fp~y~~A~~aWrakAq~TVDnA~mRYfIv 60 (69)
T PF13773_consen 31 IFPDYASAYAAWRAKAQRTVDNAHMRYFIV 60 (69)
T ss_pred cCCChHHHHHHHHHHHhCchhcceeeEEEe
Confidence 588899999999999999998877764443
No 225
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=30.17 E-value=47 Score=20.74 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=12.0
Q ss_pred CHHHHHHHHHhcCCc
Q psy4383 48 NPHDARSACLGEDGR 62 (89)
Q Consensus 48 ~~~~a~~Ai~~l~g~ 62 (89)
++++|.+||.+.||-
T Consensus 92 s~e~A~~AL~~~~gD 106 (116)
T TIGR00264 92 SKEEARRALEECGGD 106 (116)
T ss_pred CHHHHHHHHHHcCCC
Confidence 477889999888874
No 226
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=29.87 E-value=39 Score=18.73 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=15.0
Q ss_pred eEEEEeCCHHHHHHHHHhc
Q psy4383 41 YAFIQFSNPHDARSACLGE 59 (89)
Q Consensus 41 ~afV~F~~~~~a~~Ai~~l 59 (89)
.+|..|.+.++|-+++.++
T Consensus 46 ~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 46 KAFSPFKSAEEALENANAI 64 (67)
T ss_pred hhccCCCCHHHHHHHHHHh
Confidence 4888999988888877654
No 227
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=29.86 E-value=57 Score=18.45 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=22.0
Q ss_pred ecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecC
Q psy4383 28 VLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 28 l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
++|+.++|.-.+ -|-.=+|.++|..++..|+....++
T Consensus 24 ~CG~~l~vk~~r--Il~~~~~~~eA~eiVrklQ~e~~G~ 60 (68)
T PF09082_consen 24 VCGKTLKVKERR--ILARAENAEEASEIVRKLQEEKYGG 60 (68)
T ss_dssp TTTEEEE--SSS---BS--SSHHHHHHHHHHHSS---S-
T ss_pred cCCCeeeeeeEE--EEEecCCHHHHHHHHHHHHHHhccc
Confidence 577888876655 3334578999999999998877655
No 228
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=29.40 E-value=62 Score=21.30 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=22.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCcee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTV 64 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l 64 (89)
.+--|.|.|.|..+|=+|+.+......
T Consensus 124 GrqsavVvF~d~~SAC~Av~Af~s~~p 150 (166)
T PF15023_consen 124 GRQSAVVVFKDITSACKAVSAFQSRAP 150 (166)
T ss_pred CCceEEEEehhhHHHHHHHHhhcCCCC
Confidence 455799999999999999998887433
No 229
>PF12078 DUF3557: Domain of unknown function (DUF3557); InterPro: IPR021942 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length.
Probab=29.13 E-value=37 Score=21.08 Aligned_cols=25 Identities=20% Similarity=0.018 Sum_probs=14.9
Q ss_pred HHHHhcCCceecCeE--EEEEeeeeec
Q psy4383 54 SACLGEDGRTVLGQT--LVSYKLQYYN 78 (89)
Q Consensus 54 ~Ai~~l~g~~l~gr~--i~~~~~~~~~ 78 (89)
+|++.|....++||+ |.+..+....
T Consensus 4 eA~k~L~~~lfggR~~~i~V~~l~i~~ 30 (154)
T PF12078_consen 4 EAMKYLIKKLFGGRSHPIKVKKLSISN 30 (154)
T ss_pred HHHHHHHHHHcCCCCceEEEEEEEECC
Confidence 466666666777765 4555555444
No 230
>KOG2318|consensus
Probab=28.21 E-value=70 Score=25.47 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=27.9
Q ss_pred eEEEEeCCHHHHHHHHHhcCCceecC--eEEEEEee
Q psy4383 41 YAFIQFSNPHDARSACLGEDGRTVLG--QTLVSYKL 74 (89)
Q Consensus 41 ~afV~F~~~~~a~~Ai~~l~g~~l~g--r~i~~~~~ 74 (89)
||.|+|++.+.|..--..|+|..+.. ..+.+-.+
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 79999999999999999999999975 44444333
No 231
>PF09648 YycI: YycH protein; InterPro: IPR018604 The YycFG two-component system is the only signal transduction system in Bacillus subtilis known to be essential for cell viability. This system is highly conserved in low-G+C Gram-positive bacteria, regulating important processes such as cell wall homeostasis, cell membrane integrity, and cell division. Four other genes, yycHIJK, are organised within the same operon with yycF and yycG in B. subtilis. YycI and YycH proteins interact to control the activity of the YycG kinase. Both YycI and YycH proteins are localized outside the cytoplasm and attached to the membrane by an N-terminal transmembrane sequence. Bacterial two-hybrid data showed that the YycH, YycI, and the kinase YycG form a ternary complex. The data suggest that YycH and YycI control the activity of YycG in the periplasm and that this control is crucial in regulating important cellular processes [, ]. ; PDB: 2O3O_G.
Probab=27.67 E-value=1.1e+02 Score=20.59 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=21.0
Q ss_pred HHHHHHHHHhc--CCceecCeEEEEEeeeeec
Q psy4383 49 PHDARSACLGE--DGRTVLGQTLVSYKLQYYN 78 (89)
Q Consensus 49 ~~~a~~Ai~~l--~g~~l~gr~i~~~~~~~~~ 78 (89)
.-+|.+||..| ++....+..|..+.+-|+.
T Consensus 163 vIsa~~Al~~Ly~~~~i~~~s~I~~i~LGYy~ 194 (228)
T PF09648_consen 163 VISAQEALETLYQNNEIPNNSKITWIELGYYS 194 (228)
T ss_dssp B--HHHHHHHHHHTT-S-TTEEEEEEEEEEE-
T ss_pred ccCHHHHHHHHHHcCcCCCCCEEEEEEEeEeE
Confidence 44677888776 6888889999999999873
No 232
>KOG2591|consensus
Probab=27.50 E-value=1.2e+02 Score=24.31 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=16.1
Q ss_pred EEEEeCCHHHHHHHHHhcC
Q psy4383 42 AFIQFSNPHDARSACLGED 60 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~ 60 (89)
=||+|++..||+.|-+.|.
T Consensus 215 WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred eEEEeecchhHHHHHHHHH
Confidence 4899999999999986654
No 233
>PRK10905 cell division protein DamX; Validated
Probab=27.42 E-value=2.6e+02 Score=20.66 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=33.3
Q ss_pred EEEecCHHHHHHHHhhcCCceecCeEeEEEcccC---eEEE--EeCCHHHHHHHHHhcCC
Q psy4383 7 FIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG---YAFI--QFSNPHDARSACLGEDG 61 (89)
Q Consensus 7 fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG---~afV--~F~~~~~a~~Ai~~l~g 61 (89)
...+.+.+.++.-++++ | +.+..+......| |-.+ .|.+.++|++||..|-.
T Consensus 252 L~A~Ss~~~l~~fakKl-g--L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 252 LSSSSNYDNLNGWAKKE-N--LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred EEecCCHHHHHHHHHHc-C--CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 45667777777766655 2 3455554444444 2222 68999999999998754
No 234
>PF01123 Stap_Strp_toxin: Staphylococcal/Streptococcal toxin, OB-fold domain; InterPro: IPR006173 Staphylococcus aureus is a Gram-positive coccus that grows in clusters or pairs, and is the major cause of nosocomial infections due to its multiple antibiotic resistant nature []. Patients who are immunocompromised (e.g., those suffering from third degree burns or chronic illness) are at risk from deep staphylococcal infections, such as osteomyelitis and pneumonia. Most skin infections are also caused by this bacterium. Many virulence mechanisms are employed by Staphylococci to induce pathogenesis: these can include polysaccharide capsules and exotoxins []. One of the major virulence exotoxins is toxic shock syndrome toxin (TSST), which is secreted by the organism upon successful invasion. It causes a major inflammatory response in the host via superantigenic properties, and is the causative agent of toxic shock syndrome. The structure of the TSST protein was originally determined to 2.5A by means of X-ray crystallography []. The N- and C-terminal domains both contain regions involved in MHC class II association; the C-terminal domain is also implicated in binding the T-cell receptor. Overall, the structure resembles that of Staphylococcal enterotoxin B (SEB), but differs in its N terminus and in the degree to which a long central helix is covered by surface loops []. The region around the carboxyl end of this helix is proposed to govern the superantigenic properties of TSST. An adjacent region along this helix is thought to be critical in the ability of TSST to induce toxic shock syndrome. Most recently, the structures of five mutants of TSST have been determined to 1.95A []. The mutations are in the central alpha-helix, and allow mapping of portions of TSST involved in superantigenicity and lethality.; GO: 0009405 pathogenesis; PDB: 1XXG_A 1KTK_D 1HQR_D 2NTS_A 1FNW_E 1FNU_C 1L0X_B 1FNV_D 1UUP_B 1HA5_C ....
Probab=27.35 E-value=1.4e+02 Score=17.48 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=26.5
Q ss_pred CeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceec
Q psy4383 40 GYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRY 82 (89)
Q Consensus 40 G~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~ 82 (89)
-.--++|.+.+.|.. +.|+++.+..++|...|-.
T Consensus 38 ~~l~~ef~~~~~a~~---------fKgKkVDIfG~~Y~~~C~~ 71 (87)
T PF01123_consen 38 NDLKVEFNSEDLAKK---------FKGKKVDIFGLSYYYNCYG 71 (87)
T ss_dssp SEEEEE-SSHHHHHH---------HTTSEEEEEEEEBETTSSS
T ss_pred eeEEEEeCCHHHHHh---------hcCCEEEEEeccccccccc
Confidence 457789999888765 4689999999999887754
No 235
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=27.28 E-value=2.5e+02 Score=20.47 Aligned_cols=51 Identities=22% Similarity=0.090 Sum_probs=29.1
Q ss_pred EEEecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcC
Q psy4383 7 FIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGED 60 (89)
Q Consensus 7 fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~ 60 (89)
|..+.+.+++..++..+ |..+--|+....-++|. ..-.+.+++..|++.+.
T Consensus 85 ~~~~~~~~ea~~~~~~~-g~PvVvKp~~~~~gkGV--~iv~~~~el~~a~~~~~ 135 (379)
T PRK13790 85 YKEVERKKDALTYIENC-ELPVVVKKDGLAAGKGV--IIADTIEAARSAIEIMY 135 (379)
T ss_pred EEEECCHHHHHHHHHhc-CCCEEEEeCCCCCCCCE--EEECCHHHHHHHHHHHH
Confidence 45677777777776543 22222222222224554 34478999999998764
No 236
>COG3831 Uncharacterized conserved protein [Function unknown]
Probab=26.98 E-value=1.1e+02 Score=18.11 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=27.3
Q ss_pred HHHHhhcCCceecCeEeEEEc----ccCeE-EEEeCCHHHHHHHHHhc
Q psy4383 17 RSACLGEDGRTVLGQTLGISM----HKGYA-FIQFSNPHDARSACLGE 59 (89)
Q Consensus 17 ~~Ai~~l~g~~l~g~~i~v~~----~rG~a-fV~F~~~~~a~~Ai~~l 59 (89)
...+.+..-..+.|-.+.++| .+|-. .=+|++.++|.+|...|
T Consensus 11 ~~n~~kFy~~~i~g~~L~~~wGRiG~~Gq~~~k~F~~~~~a~~~~~kL 58 (85)
T COG3831 11 KRNMAKFYAVEIEGAELTRNWGRIGTKGQSQIKSFDDSADAEKAALKL 58 (85)
T ss_pred cccccceEEEEEecceeEEeecccccCcceeeeeCCCHHHHHHHHHHH
Confidence 344445555566677777776 34433 34799988888776544
No 237
>KOG4285|consensus
Probab=26.60 E-value=90 Score=22.95 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=24.7
Q ss_pred eEEEEecCHHHHHHHHhhcCCceecCeEeE
Q psy4383 5 YAFIQFSNPHDARSACLGEDGRTVLGQTLG 34 (89)
Q Consensus 5 f~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~ 34 (89)
+-.|.|.+.-+|++|+. .||++|.|.++.
T Consensus 234 wMhirYssr~~A~KALs-kng~ii~g~vmi 262 (350)
T KOG4285|consen 234 WMHIRYSSRTHAQKALS-KNGTIIDGDVMI 262 (350)
T ss_pred eEEEEecchhHHHHhhh-hcCeeeccceEE
Confidence 45789999999999998 899999887653
No 238
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=25.97 E-value=62 Score=20.16 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=11.2
Q ss_pred CHHHHHHHHHhcCCc
Q psy4383 48 NPHDARSACLGEDGR 62 (89)
Q Consensus 48 ~~~~a~~Ai~~l~g~ 62 (89)
++++|.+||.+.||-
T Consensus 90 s~~~A~~AL~~~~gD 104 (115)
T PRK06369 90 SEEEARKALEEANGD 104 (115)
T ss_pred CHHHHHHHHHHcCCc
Confidence 467788888887774
No 239
>PF12599 DUF3768: Protein of unknown function (DUF3768); InterPro: IPR022243 This family of proteins is found in bacteria. Proteins in this family are typically between 108 and 129 amino acids in length. There are two conserved sequence motifs: NDP and RVLT.
Probab=25.89 E-value=1.5e+02 Score=17.45 Aligned_cols=25 Identities=28% Similarity=0.639 Sum_probs=18.5
Q ss_pred eecCeEEEEEeeeee-cceeccCCCCC
Q psy4383 63 TVLGQTLVSYKLQYY-NGCRYVSPTPT 88 (89)
Q Consensus 63 ~l~gr~i~~~~~~~~-~~~~~~~~~~~ 88 (89)
++.|+++ ++++.|| ..-+|+||.|.
T Consensus 43 ~~~g~~v-fWKIDyYD~d~~~gS~dPa 68 (84)
T PF12599_consen 43 EFDGEKV-FWKIDYYDPDLEFGSPDPA 68 (84)
T ss_pred EECCEEE-EEEEEEEcCccccCCCCCC
Confidence 5678888 6667654 56789999985
No 240
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=24.40 E-value=51 Score=22.09 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCceecCeEEEEEeeeeecceeccCCCCCC
Q psy4383 49 PHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYVSPTPTT 89 (89)
Q Consensus 49 ~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~~~~~~~ 89 (89)
-+.|++|++ .-.+.++||-|+ ..+++|||-|
T Consensus 9 D~~A~ravE-~aa~~iGgRCIS---------~S~GNPT~ls 39 (180)
T PF14097_consen 9 DEYAKRAVE-IAAKNIGGRCIS---------QSAGNPTPLS 39 (180)
T ss_pred hHHHHHHHH-HHHHHhCcEEEe---------ccCCCCCcCC
Confidence 356777777 667788899884 4566777754
No 241
>PHA02763 hypothetical protein; Provisional
Probab=24.24 E-value=1.1e+02 Score=18.29 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=35.5
Q ss_pred hcCCceecCeEeEEEc------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 22 GEDGRTVLGQTLGISM------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 22 ~l~g~~l~g~~i~v~~------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
+++.+...|+.|.+.. ++=.-|--|++.|+=..+-+.|++..++-.+-.
T Consensus 37 ~v~dr~f~gKvIa~ap~t~~~LsKYv~~SGFe~VEeWl~eArrLh~~~id~~rye 91 (102)
T PHA02763 37 KVGDKRFPGKVIAKAPVTEYCLSKYVKFSGFENVEEWLNEARRLHNDKIDPERYE 91 (102)
T ss_pred EecCccccceEEEecCchHHHHHHHhhhcchhhHHHHHHHHHHHhcCCCChhheE
Confidence 3455666777776642 555567778999999999999999998865433
No 242
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=24.08 E-value=1.6e+02 Score=18.98 Aligned_cols=31 Identities=10% Similarity=-0.093 Sum_probs=22.9
Q ss_pred eEEEcccCeEEEEeCCHHHHHHHHHhcCCcee
Q psy4383 33 LGISMHKGYAFIQFSNPHDARSACLGEDGRTV 64 (89)
Q Consensus 33 i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l 64 (89)
..++.+++...|.|+..++...|-. |.|..+
T Consensus 35 ~~~r~~~~~~lv~f~gi~dr~~Ae~-L~g~~l 65 (161)
T PRK13828 35 ALARPAKDGLVARLKGVATREAAEA-LRGLEL 65 (161)
T ss_pred EEEEEECCEEEEEECCCCCHHHHHH-hcCCEE
Confidence 3455678888999998888877765 666655
No 243
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=23.92 E-value=1.3e+02 Score=17.72 Aligned_cols=30 Identities=13% Similarity=-0.004 Sum_probs=23.1
Q ss_pred EEEEeCCHHHHHHHHHhcCCceec--CeEEEE
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTVL--GQTLVS 71 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l~--gr~i~~ 71 (89)
-.+=|.+-.+++.||+.++.+... |++|.+
T Consensus 46 ~a~FfV~D~~tA~aLk~vsrkI~~~dg~Ki~I 77 (88)
T PF09162_consen 46 RAQFFVEDASTASALKDVSRKICDEDGFKISI 77 (88)
T ss_dssp EEEEEESSHHHHHHHHTTTTTEEBTTSBEE--
T ss_pred EEEEEeCCHHHHHHHHHCCCceECCCCCEEEE
Confidence 566788888999999999998774 777753
No 244
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=23.33 E-value=1.3e+02 Score=17.53 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=19.6
Q ss_pred CHHHHHHHHHhcCCceecC-eEEE
Q psy4383 48 NPHDARSACLGEDGRTVLG-QTLV 70 (89)
Q Consensus 48 ~~~~a~~Ai~~l~g~~l~g-r~i~ 70 (89)
+.++.+.+|+.|.|..+.+ ..|.
T Consensus 6 s~~ei~~~L~~l~~W~~~~~~~l~ 29 (95)
T PF01329_consen 6 SEEEIAEALAELPGWKLDGGGRLE 29 (95)
T ss_dssp THHHHHHHHHTSTTSEEETSSEEE
T ss_pred CHHHHHHhhhcCcCCEECCCCcEE
Confidence 5788899999999999998 6664
No 245
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=22.96 E-value=2.1e+02 Score=22.64 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=31.9
Q ss_pred EEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 35 ISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 35 v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+++...|.||+-.. +.|...+..|++.++.|++|.+..+
T Consensus 522 i~i~~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 522 IKLFASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred EEEeCCceEEEcCh-hhHHHHHHHhccccccCCceEEEEC
Confidence 45678899999765 4588889999999999999976655
No 246
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=22.89 E-value=2e+02 Score=17.86 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=34.5
Q ss_pred EEEecCHHHHHHHHhhcCCceecCeEeEEEc--------ccCeEEEEeCCHHHHHHHHHhcCCc
Q psy4383 7 FIQFSNPHDARSACLGEDGRTVLGQTLGISM--------HKGYAFIQFSNPHDARSACLGEDGR 62 (89)
Q Consensus 7 fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~--------~rG~afV~F~~~~~a~~Ai~~l~g~ 62 (89)
++.+.+.. ...++..+.|+.+.++++.|.. .+-.-||.=.+.......+..+.+.
T Consensus 30 icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~~~~~~~~C~ilyi~~~~~~~~~~i~~~~~~~ 92 (145)
T PF13689_consen 30 ICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLSSPNEISGCHILYISSSESSQLPEILRKLPGK 92 (145)
T ss_pred EEEECChH-HHHHHHHhhhcccCCCcEEEEECCCCcccccccEEEECCCChHHHHHHHHhcCCC
Confidence 44444443 4567888899999999998763 2334555555555555666666544
No 247
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=22.71 E-value=91 Score=14.73 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=9.5
Q ss_pred CHHHHHHHHHhcCC
Q psy4383 48 NPHDARSACLGEDG 61 (89)
Q Consensus 48 ~~~~a~~Ai~~l~g 61 (89)
+.+.|.+||...+|
T Consensus 15 ~~~~~~~AL~~~~~ 28 (37)
T PF00627_consen 15 SREQAREALRACNG 28 (37)
T ss_dssp -HHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHcCC
Confidence 35578888887665
No 248
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=22.59 E-value=78 Score=17.43 Aligned_cols=32 Identities=13% Similarity=0.320 Sum_probs=22.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i 69 (89)
.+||+.+-+-..++++..|++.-|.++.+-++
T Consensus 10 ~gg~v~~pwcg~~ece~~ike~t~at~rciP~ 41 (68)
T PF09180_consen 10 KGGFVLVPWCGDEECEEKIKEETGATIRCIPF 41 (68)
T ss_dssp TSSEEEEEES-SHHHHHHHHHHHS-EEEEEET
T ss_pred CCCEEEEEccCCHHHHHHHHHhcCCcEeEeEc
Confidence 45788888888888888888887666655554
No 249
>KOG0862|consensus
Probab=22.57 E-value=44 Score=23.10 Aligned_cols=12 Identities=42% Similarity=0.777 Sum_probs=10.6
Q ss_pred ccCeEEEEeCCH
Q psy4383 38 HKGYAFIQFSNP 49 (89)
Q Consensus 38 ~rG~afV~F~~~ 49 (89)
+|.|+||+|++.
T Consensus 108 ~RPY~FieFD~~ 119 (216)
T KOG0862|consen 108 SRPYAFIEFDTF 119 (216)
T ss_pred CCCeeEEehhHH
Confidence 799999999873
No 250
>cd04493 BRCA2DBD_OB1 BRCA2DBD_OB1: A subfamily of OB folds corresponding to the first OB fold (OB1) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA). BRCA2DBD OB1 binds DNA weakly.
Probab=22.13 E-value=1.3e+02 Score=18.30 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.6
Q ss_pred CCceecCeEEEEEeeeeecceeccCCC
Q psy4383 60 DGRTVLGQTLVSYKLQYYNGCRYVSPT 86 (89)
Q Consensus 60 ~g~~l~gr~i~~~~~~~~~~~~~~~~~ 86 (89)
+|+..-|++|.+..+...+.....||+
T Consensus 48 ~gkl~vGqKL~i~GA~l~~~~~~~spl 74 (100)
T cd04493 48 KGKLRVGQKLRICGAELLGSANPCSPL 74 (100)
T ss_pred cCCeecccEEEEECceeecCCCCcCcc
Confidence 789999999999888877777777776
No 251
>PF11181 YflT: Heat induced stress protein YflT
Probab=21.95 E-value=1.1e+02 Score=18.09 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=17.5
Q ss_pred EeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 45 QFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 45 ~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
.|.+.++|..||..|...=+...-|.++
T Consensus 5 v~~~~~E~~~~I~~L~~~Gy~~ddI~Vv 32 (103)
T PF11181_consen 5 VYDNEEEALSAIEELKAQGYSEDDIYVV 32 (103)
T ss_pred EECCHHHHHHHHHHHHHcCCCcccEEEE
Confidence 4677777777777776655555555443
No 252
>PF14047 DCR: Dppa2/4 conserved region
Probab=21.93 E-value=78 Score=17.81 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=15.1
Q ss_pred EEeeeeecceeccCCCCC
Q psy4383 71 SYKLQYYNGCRYVSPTPT 88 (89)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~ 88 (89)
++.+|+..|--|||-+|+
T Consensus 17 wv~LqfhaGqawVp~~~~ 34 (66)
T PF14047_consen 17 WVRLQFHAGQAWVPETPG 34 (66)
T ss_pred ceeeeeecCceeccCCCC
Confidence 678899999999988864
No 253
>KOG4574|consensus
Probab=21.88 E-value=70 Score=26.71 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=38.5
Q ss_pred HHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceec--CeEEEE
Q psy4383 15 DARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVL--GQTLVS 71 (89)
Q Consensus 15 ~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~--gr~i~~ 71 (89)
.+..++..-+|.++.++.++ .-.-+.|+|.+.+.|-.|+.+|+|+..- |-+.++
T Consensus 313 ssL~~l~s~yg~v~s~wtlr---~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V 368 (1007)
T KOG4574|consen 313 SSLATLCSDYGSVASAWTLR---DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRV 368 (1007)
T ss_pred HHHHHHHHhhcchhhheecc---cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeE
Confidence 34455555677777776653 2334999999999999999999999763 555443
No 254
>PF14882 GHL12: Hypothetical glycosyl hydrolase 12
Probab=21.53 E-value=87 Score=16.58 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=9.9
Q ss_pred EeCCHHHHHHHHHhc
Q psy4383 45 QFSNPHDARSACLGE 59 (89)
Q Consensus 45 ~F~~~~~a~~Ai~~l 59 (89)
.|.+.++|.+|...|
T Consensus 39 ~Y~t~~eA~~Aa~~L 53 (53)
T PF14882_consen 39 FYPTYEEASKAAIKL 53 (53)
T ss_pred ccCCHHHHHHHHHhC
Confidence 356777777776544
No 255
>PF11310 DUF3113: Protein of unknown function (DUF3113); InterPro: IPR021461 This entry is represented by Bacteriophage 92, Orf93. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.51 E-value=1.5e+02 Score=16.16 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=22.3
Q ss_pred eEeEEEcccCeEEEEeCCHHHHHHHHHh
Q psy4383 31 QTLGISMHKGYAFIQFSNPHDARSACLG 58 (89)
Q Consensus 31 ~~i~v~~~rG~afV~F~~~~~a~~Ai~~ 58 (89)
..+.++++.-.-+..|.+.+..+.+|..
T Consensus 9 AtidiRIPTeVe~~~~~~vD~eKe~LAd 36 (60)
T PF11310_consen 9 ATIDIRIPTEVEYHHFDDVDKEKEALAD 36 (60)
T ss_pred eEEeEeccceeeecchhhhhhHHHHHHH
Confidence 3566777887788899999999988863
No 256
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=21.37 E-value=49 Score=11.37 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=4.5
Q ss_pred eeccCCC
Q psy4383 80 CRYVSPT 86 (89)
Q Consensus 80 ~~~~~~~ 86 (89)
..|+||.
T Consensus 2 ~eYLpP~ 8 (9)
T PF02757_consen 2 NEYLPPV 8 (9)
T ss_pred ccccCCC
Confidence 3577774
No 257
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=21.34 E-value=57 Score=20.08 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=28.9
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+..|+..+.|.+++++.+++. .....+.+..+.+..+
T Consensus 53 l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W 89 (153)
T PF14111_consen 53 LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRW 89 (153)
T ss_pred eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhh
Confidence 488999999999999999987 5556677776654444
No 258
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=21.26 E-value=78 Score=18.36 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=18.8
Q ss_pred cCeEEEEeCCHHHHHHHHHhcCC
Q psy4383 39 KGYAFIQFSNPHDARSACLGEDG 61 (89)
Q Consensus 39 rG~afV~F~~~~~a~~Ai~~l~g 61 (89)
.|++=+.|+|.++.++|+.+-.+
T Consensus 53 d~i~el~Fds~e~~~~a~~sp~~ 75 (100)
T TIGR02118 53 YGMCELYFDSIEDFQAAFDSPEG 75 (100)
T ss_pred eEEEEEEECCHHHHHHHHcCHHH
Confidence 36788899999999999866554
No 259
>PRK14594 rimM 16S rRNA-processing protein RimM; Provisional
Probab=21.00 E-value=1.8e+02 Score=18.76 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=22.1
Q ss_pred EEEcccCeEEEEeCCHHHHHHHHHhcCCcee
Q psy4383 34 GISMHKGYAFIQFSNPHDARSACLGEDGRTV 64 (89)
Q Consensus 34 ~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l 64 (89)
.++.+++...+.|+..++...|-+ |.|..+
T Consensus 53 ~~r~~~~~~lvkf~gi~dr~~Ae~-L~g~~l 82 (166)
T PRK14594 53 DVSLKNNSLLLKFEEFNAPEPIKP-LIGFEL 82 (166)
T ss_pred EEEEECCEEEEEEcCCCCHHHHHH-hcCCEE
Confidence 355688888999988877777755 666555
No 260
>KOG0804|consensus
Probab=20.67 E-value=3.7e+02 Score=20.92 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=27.9
Q ss_pred eEeEEEcccCe-EEEEeCCHHHHHHHHHhcCCceecC
Q psy4383 31 QTLGISMHKGY-AFIQFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 31 ~~i~v~~~rG~-afV~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
+.|+.....-| ..|.|.+.++|..--..+||+.++.
T Consensus 106 rivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 106 RIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred EEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34443334444 7899999999999999999999876
No 261
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=20.51 E-value=2.1e+02 Score=18.50 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=22.0
Q ss_pred EEEcccCeEEEEeCCHHHHHHHHHhcCCcee
Q psy4383 34 GISMHKGYAFIQFSNPHDARSACLGEDGRTV 64 (89)
Q Consensus 34 ~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l 64 (89)
.++.+++..+|.|+..++.+.|-+ |.|..+
T Consensus 56 ~~~~~~~~~lvkf~gi~~~~~Ae~-l~g~~l 85 (172)
T PRK00122 56 SGRFHKGFLIVKFEGVDDRNAAEA-LKGCEL 85 (172)
T ss_pred EEEEECCEEEEEECCCCCHHHHHH-hCCCEE
Confidence 345678888999988888777766 666554
No 262
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=20.39 E-value=90 Score=15.58 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=11.9
Q ss_pred eCCHHHHHHHHHhcC
Q psy4383 46 FSNPHDARSACLGED 60 (89)
Q Consensus 46 F~~~~~a~~Ai~~l~ 60 (89)
|.+..+|+.++..+-
T Consensus 24 F~TkkeA~~~~~~~~ 38 (46)
T PF14657_consen 24 FKTKKEAEKALAKIE 38 (46)
T ss_pred CCcHHHHHHHHHHHH
Confidence 788999998887653
No 263
>KOG2187|consensus
Probab=20.38 E-value=50 Score=25.86 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=29.7
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
-..++++.|++.+.+.+|+..++|....+..+++
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~ 95 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRV 95 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhh
Confidence 3478999999999999999999999888877654
No 264
>PRK11901 hypothetical protein; Reviewed
Probab=20.37 E-value=3.6e+02 Score=19.89 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=18.1
Q ss_pred CeEEE--EeCCHHHHHHHHHhcCCce
Q psy4383 40 GYAFI--QFSNPHDARSACLGEDGRT 63 (89)
Q Consensus 40 G~afV--~F~~~~~a~~Ai~~l~g~~ 63 (89)
.|..| .|.+.++|+.||..|....
T Consensus 283 WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 283 WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 34444 7899999999999886543
No 265
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=20.22 E-value=2.2e+02 Score=17.26 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=37.5
Q ss_pred ceeEEEEecCHHHHHHHHhhc----------CCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCe
Q psy4383 3 KGYAFIQFSNPHDARSACLGE----------DGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQ 67 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l----------~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr 67 (89)
.+-+.|.++..++-++|-+-+ +|.++.|+..+..-.+|-.-++|+. .|.|+.+++.
T Consensus 25 P~~~liKi~gv~s~~eA~~y~gk~v~yk~~~~G~Vi~G~V~R~HGnsGaVrarF~~---------~LP~qa~G~~ 90 (100)
T COG2451 25 PNVSLIKIEGVDSPEEAQFYLGKRVCYKYRSSGRVIKGKVVRTHGNSGAVRARFER---------NLPGQALGTS 90 (100)
T ss_pred CceEEEEEecCCCHHHHHhhhccEEEEEeCCCCcEEEEEEEEecCCcceEEEEecC---------CCCchhcCcE
Confidence 455777777555555554312 4777888888888889988889986 3666666553
No 266
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=20.16 E-value=1.3e+02 Score=16.57 Aligned_cols=19 Identities=16% Similarity=0.010 Sum_probs=13.3
Q ss_pred eEEEEeCCHHHHHHHHHhc
Q psy4383 41 YAFIQFSNPHDARSACLGE 59 (89)
Q Consensus 41 ~afV~F~~~~~a~~Ai~~l 59 (89)
-.-|.|.+++.|+.+...|
T Consensus 4 ~l~i~f~s~~~A~ii~~sL 22 (76)
T PF09341_consen 4 TLEIPFESEEKAEIIYRSL 22 (76)
T ss_dssp EEEEE-SSHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHh
Confidence 3567889988888777655
Done!