Query psy4383
Match_columns 89
No_of_seqs 116 out of 1154
Neff 7.8
Searched_HMMs 29240
Date Sat Aug 17 00:08:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 99.8 2.9E-18 9.9E-23 113.6 9.2 73 2-74 56-178 (213)
2 3md3_A Nuclear and cytoplasmic 99.8 4.2E-18 1.4E-22 107.1 9.4 71 2-72 40-162 (166)
3 1fje_B Nucleolin RBD12, protei 99.8 4.7E-18 1.6E-22 108.4 9.1 69 2-71 53-168 (175)
4 2g4b_A Splicing factor U2AF 65 99.7 8.1E-18 2.8E-22 106.7 8.9 70 2-72 50-169 (172)
5 2qfj_A FBP-interacting repress 99.7 6.8E-18 2.3E-22 110.5 7.6 83 2-87 69-212 (216)
6 1b7f_A Protein (SXL-lethal pro 99.7 1.6E-17 5.5E-22 104.8 7.8 70 2-71 44-165 (168)
7 1fxl_A Paraneoplastic encephal 99.7 2.7E-17 9.2E-22 103.4 7.7 68 2-69 43-160 (167)
8 2yh0_A Splicing factor U2AF 65 99.7 4.8E-17 1.6E-21 105.2 7.7 71 2-73 50-190 (198)
9 3smz_A Protein raver-1, ribonu 99.7 4E-16 1.4E-20 106.4 9.1 72 2-73 136-260 (284)
10 3smz_A Protein raver-1, ribonu 99.7 5.3E-16 1.8E-20 105.7 9.3 73 2-74 56-172 (284)
11 1l3k_A Heterogeneous nuclear r 99.6 1.2E-15 4.1E-20 98.4 9.2 71 2-74 54-180 (196)
12 3nmr_A Cugbp ELAV-like family 99.6 7E-16 2.4E-20 97.7 6.5 71 2-72 46-172 (175)
13 2cjk_A Nuclear polyadenylated 99.6 9.4E-16 3.2E-20 96.7 5.7 69 2-73 44-162 (167)
14 3pgw_A U1-A; protein-RNA compl 99.6 5.2E-15 1.8E-19 100.7 9.8 34 38-71 243-277 (282)
15 2ghp_A U4/U6 snRNA-associated 99.6 6.1E-15 2.1E-19 100.8 10.0 71 2-73 80-193 (292)
16 3tyt_A Heterogeneous nuclear r 99.6 3.1E-15 1.1E-19 99.2 8.0 66 2-67 41-193 (205)
17 2ghp_A U4/U6 snRNA-associated 99.6 6.3E-15 2.2E-19 100.7 9.4 70 2-72 158-286 (292)
18 3sde_A Paraspeckle component 1 99.6 3.1E-15 1.1E-19 101.6 7.7 73 2-74 57-176 (261)
19 2adc_A Polypyrimidine tract-bi 99.6 5.1E-15 1.7E-19 98.8 7.0 69 3-71 72-222 (229)
20 2kn4_A Immunoglobulin G-bindin 99.6 8.1E-15 2.8E-19 92.8 7.5 73 2-74 12-147 (158)
21 1qm9_A Polypyrimidine tract-bi 99.5 5.4E-15 1.8E-19 96.0 5.2 69 3-71 41-191 (198)
22 2i2y_A Fusion protein consists 99.5 1.3E-14 4.6E-19 91.4 4.3 70 2-72 12-143 (150)
23 2wbr_A GW182, gawky, LD47780P; 99.3 3.3E-12 1.1E-16 75.4 5.4 62 11-75 18-79 (89)
24 3s6e_A RNA-binding protein 39; 99.2 7.1E-12 2.4E-16 76.7 1.6 48 38-88 54-101 (114)
25 2cpd_A Apobec-1 stimulating pr 99.1 1.8E-10 6.3E-15 67.6 7.5 45 30-74 42-86 (99)
26 3v4m_A Splicing factor U2AF 65 99.1 4.5E-11 1.5E-15 71.9 4.7 42 38-82 58-99 (105)
27 2wbr_A GW182, gawky, LD47780P; 99.1 9.5E-11 3.3E-15 69.1 5.1 38 1-38 41-78 (89)
28 3s8s_A Histone-lysine N-methyl 99.1 1.5E-10 5.1E-15 70.0 5.8 64 12-75 18-84 (110)
29 4fxv_A ELAV-like protein 1; RN 99.1 1.3E-10 4.5E-15 68.9 5.4 60 13-72 32-94 (99)
30 2pe8_A Splicing factor 45; RRM 99.1 1.9E-10 6.6E-15 69.2 6.0 54 20-73 33-90 (105)
31 2dnq_A RNA-binding protein 4B; 99.1 2.7E-10 9.1E-15 65.8 5.9 45 30-74 33-77 (90)
32 2xnq_A Nuclear polyadenylated 99.1 3.3E-10 1.1E-14 66.8 6.2 44 29-72 47-90 (97)
33 3ue2_A Poly(U)-binding-splicin 99.1 8.5E-10 2.9E-14 67.7 8.2 53 21-73 46-105 (118)
34 4a8x_A RNA-binding protein wit 99.1 8.6E-10 2.9E-14 63.0 7.7 61 14-74 18-82 (88)
35 2cpi_A CCR4-NOT transcription 99.1 1.8E-10 6.1E-15 69.2 5.0 38 38-75 62-99 (111)
36 1jmt_A Splicing factor U2AF 35 99.1 2.5E-10 8.5E-15 68.5 5.4 34 38-71 67-100 (104)
37 2lea_A Serine/arginine-rich sp 99.1 9.3E-11 3.2E-15 73.1 3.6 69 5-73 6-123 (135)
38 2cqh_A IGF-II mRNA-binding pro 99.0 5.7E-10 2E-14 64.7 6.4 59 13-74 21-80 (93)
39 4f25_A Polyadenylate-binding p 99.0 3.3E-10 1.1E-14 68.5 5.5 63 12-74 17-80 (115)
40 2cpf_A RNA binding motif prote 99.0 7.5E-10 2.6E-14 64.7 6.9 62 13-74 18-85 (98)
41 3p5t_L Cleavage and polyadenyl 99.0 8.2E-11 2.8E-15 68.2 2.6 61 12-72 13-78 (90)
42 2dit_A HIV TAT specific factor 99.0 3.5E-10 1.2E-14 68.1 5.3 58 16-74 42-99 (112)
43 2dgx_A KIAA0430 protein; RRM d 99.0 8.9E-10 3E-14 64.5 7.0 36 39-74 52-87 (96)
44 1x5p_A Negative elongation fac 99.0 3.2E-09 1.1E-13 62.1 9.4 68 14-87 27-94 (97)
45 3ns6_A Eukaryotic translation 99.0 4.9E-10 1.7E-14 66.2 5.8 61 14-74 26-90 (100)
46 1wg1_A KIAA1579 protein, homol 99.0 8.8E-10 3E-14 63.5 6.8 39 34-72 35-73 (88)
47 2kvi_A Nuclear polyadenylated 99.0 2.2E-10 7.5E-15 67.1 4.1 45 30-74 36-80 (96)
48 2dgt_A RNA-binding protein 30; 99.0 1E-09 3.6E-14 63.5 6.6 45 30-74 35-79 (92)
49 2cq2_A Hypothetical protein LO 99.0 6.6E-10 2.3E-14 68.1 5.9 70 11-86 38-112 (114)
50 2fc9_A NCL protein; structure 99.0 8.6E-10 2.9E-14 64.8 6.1 37 38-74 52-88 (101)
51 1x4a_A Splicing factor, argini 99.0 5.5E-10 1.9E-14 66.6 5.4 60 14-73 36-95 (109)
52 2jvr_A Nucleolar protein 3; RN 99.0 5.6E-10 1.9E-14 67.8 5.3 36 38-73 66-101 (111)
53 2cq3_A RNA-binding protein 9; 99.0 1.9E-09 6.5E-14 63.5 7.4 38 38-75 54-91 (103)
54 2dgu_A Heterogeneous nuclear r 99.0 1.2E-09 4.2E-14 64.5 6.5 46 29-74 35-80 (103)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.0 1.5E-09 5.1E-14 61.7 6.7 35 38-72 48-82 (85)
56 2dnp_A RNA-binding protein 14; 99.0 1.3E-09 4.5E-14 62.8 6.4 46 29-74 33-78 (90)
57 3r27_A HnRNP L, heterogeneous 99.0 5.9E-10 2E-14 66.9 4.9 66 10-81 31-98 (100)
58 2cqb_A Peptidyl-prolyl CIS-tra 99.0 9E-10 3.1E-14 64.7 5.6 38 38-75 53-90 (102)
59 2cqp_A RNA-binding protein 12; 99.0 1.4E-09 4.7E-14 63.5 6.3 60 14-73 29-91 (98)
60 2dnz_A Probable RNA-binding pr 99.0 1.5E-09 5E-14 63.0 6.3 39 38-76 46-84 (95)
61 1whx_A Hypothetical protein ri 99.0 1.3E-09 4.3E-14 65.7 6.1 67 13-85 23-89 (111)
62 2krb_A Eukaryotic translation 99.0 4.1E-10 1.4E-14 63.9 3.6 57 15-71 22-80 (81)
63 4fxv_A ELAV-like protein 1; RN 99.0 8.1E-10 2.8E-14 65.4 4.8 38 2-39 60-97 (99)
64 2ek1_A RNA-binding protein 12; 99.0 9.5E-10 3.2E-14 63.8 5.0 59 14-72 29-90 (95)
65 3md1_A Nuclear and cytoplasmic 99.0 2.8E-09 9.5E-14 60.3 6.9 59 14-72 15-76 (83)
66 2fc8_A NCL protein; structure 99.0 1.1E-09 3.8E-14 64.3 5.3 37 38-74 53-89 (102)
67 1wf1_A RNA-binding protein RAL 99.0 7.1E-10 2.4E-14 66.3 4.5 45 30-74 53-97 (110)
68 2a3j_A U1 small nuclear ribonu 99.0 4.9E-10 1.7E-14 69.5 3.8 54 19-72 52-105 (127)
69 1whw_A Hypothetical protein ri 99.0 2.7E-09 9.2E-14 62.4 6.8 38 38-75 49-86 (99)
70 2cpj_A Non-POU domain-containi 99.0 1.5E-09 5.1E-14 63.7 5.6 56 15-73 30-85 (99)
71 1x4c_A Splicing factor, argini 98.9 3.6E-09 1.2E-13 63.1 7.2 59 12-75 27-91 (108)
72 2diu_A KIAA0430 protein; struc 98.9 6.7E-10 2.3E-14 66.2 3.9 40 31-72 40-79 (96)
73 1oo0_B CG8781-PA, drosophila Y 98.9 3.8E-09 1.3E-13 62.9 7.2 37 38-74 67-103 (110)
74 3n9u_C Cleavage and polyadenyl 98.9 1.8E-09 6.1E-14 68.9 6.1 63 12-74 67-134 (156)
75 2jvo_A Nucleolar protein 3; nu 98.9 1.3E-09 4.6E-14 65.4 5.2 40 32-71 58-97 (108)
76 3bs9_A Nucleolysin TIA-1 isofo 98.9 3.1E-09 1.1E-13 60.6 6.5 36 38-73 47-82 (87)
77 2cpz_A CUG triplet repeat RNA- 98.9 1.6E-09 5.6E-14 65.0 5.4 71 14-87 39-112 (115)
78 2cq0_A Eukaryotic translation 98.9 4.4E-09 1.5E-13 61.9 7.2 36 38-73 56-91 (103)
79 2e5h_A Zinc finger CCHC-type a 98.9 3.6E-09 1.2E-13 61.2 6.7 35 38-72 57-91 (94)
80 2cqc_A Arginine/serine-rich sp 98.9 1.7E-09 6E-14 62.6 5.3 58 14-71 29-89 (95)
81 2dgw_A Probable RNA-binding pr 98.9 1.4E-09 4.9E-14 62.7 4.9 36 38-74 49-84 (91)
82 2lkz_A RNA-binding protein 5; 98.9 9.9E-10 3.4E-14 64.9 4.1 36 37-72 51-90 (95)
83 2dng_A Eukaryotic translation 98.9 4.2E-09 1.4E-13 62.1 6.8 37 38-75 55-91 (103)
84 2x1f_A MRNA 3'-END-processing 98.9 3.2E-09 1.1E-13 61.9 6.2 35 38-72 43-77 (96)
85 2cpx_A Hypothetical protein FL 98.9 1.8E-09 6.1E-14 64.7 5.2 48 37-87 65-112 (115)
86 1sjq_A Polypyrimidine tract-bi 98.9 9E-10 3.1E-14 66.6 3.7 58 13-73 29-88 (105)
87 2hzc_A Splicing factor U2AF 65 98.9 3.3E-09 1.1E-13 60.5 5.8 37 35-72 49-85 (87)
88 1x5t_A Splicing factor 3B subu 98.9 2.5E-09 8.5E-14 62.1 5.4 61 14-74 19-83 (96)
89 2cpe_A RNA-binding protein EWS 98.9 2.7E-09 9.2E-14 63.8 5.6 37 38-74 64-100 (113)
90 1x5s_A Cold-inducible RNA-bind 98.9 2.1E-09 7.2E-14 63.1 5.0 38 38-75 53-90 (102)
91 2jvr_A Nucleolar protein 3; RN 98.9 2.3E-09 7.7E-14 65.1 5.2 39 2-40 66-104 (111)
92 1wex_A Hypothetical protein (r 98.9 3.5E-09 1.2E-13 63.5 5.9 64 11-80 26-91 (104)
93 3s8s_A Histone-lysine N-methyl 98.9 1.8E-09 6.2E-14 65.1 4.7 38 2-39 47-84 (110)
94 2la4_A Nuclear and cytoplasmic 98.9 3.6E-09 1.2E-13 62.1 5.8 55 14-71 41-95 (101)
95 2la6_A RNA-binding protein FUS 98.9 1.8E-09 6.1E-14 63.3 4.5 36 38-73 62-97 (99)
96 1wi8_A EIF-4B, eukaryotic tran 98.9 2.4E-09 8.3E-14 63.2 5.1 36 38-74 56-91 (104)
97 1fjc_A Nucleolin RBD2, protein 98.9 1.7E-09 5.7E-14 62.9 4.3 38 37-74 51-88 (96)
98 1x4d_A Matrin 3; structural ge 98.9 1.8E-09 6.1E-14 64.8 4.5 61 11-74 27-89 (102)
99 2nlw_A Eukaryotic translation 98.9 2.3E-09 7.9E-14 63.7 4.8 61 14-74 35-97 (105)
100 2kt5_A RNA and export factor-b 98.9 3E-09 1E-13 64.7 5.4 35 38-72 75-109 (124)
101 2lxi_A RNA-binding protein 10; 98.9 2E-09 6.8E-14 62.7 4.4 35 37-71 42-77 (91)
102 2ytc_A PRE-mRNA-splicing facto 98.9 7.2E-09 2.5E-13 58.8 6.6 53 17-72 29-82 (85)
103 1x5u_A Splicing factor 3B subu 98.9 1.4E-09 4.8E-14 64.2 3.7 37 38-74 56-92 (105)
104 2dnm_A SRP46 splicing factor; 98.9 1.2E-09 4.3E-14 64.3 3.5 37 38-74 54-90 (103)
105 2dnn_A RNA-binding protein 12; 98.9 3.1E-09 1.1E-13 64.3 5.2 36 38-74 55-90 (109)
106 2e5j_A Methenyltetrahydrofolat 98.9 3.9E-09 1.3E-13 61.7 5.5 59 13-73 32-90 (97)
107 2dgs_A DAZ-associated protein 98.9 3E-09 1E-13 62.2 4.9 36 38-74 51-86 (99)
108 2hvz_A Splicing factor, argini 98.9 6.2E-10 2.1E-14 65.4 1.8 37 38-74 36-72 (101)
109 3zzy_A Polypyrimidine tract-bi 98.9 8.9E-09 3.1E-13 64.4 7.1 60 10-71 38-100 (130)
110 3ulh_A THO complex subunit 4; 98.9 6E-09 2.1E-13 61.6 6.1 35 38-72 69-103 (107)
111 2cq1_A PTB-like protein L; RRM 98.9 2.3E-08 7.9E-13 59.6 8.6 57 13-72 28-86 (101)
112 1nu4_A U1A RNA binding domain; 98.9 8.2E-09 2.8E-13 60.0 6.5 35 38-72 50-84 (97)
113 2bz2_A Negative elongation fac 98.9 5.9E-09 2E-13 63.8 6.0 58 13-73 50-107 (121)
114 3mdf_A Peptidyl-prolyl CIS-tra 98.9 3.7E-09 1.3E-13 60.0 4.8 38 2-39 48-85 (85)
115 1jmt_A Splicing factor U2AF 35 98.9 2.7E-09 9.4E-14 63.9 4.4 36 2-37 67-102 (104)
116 2dgo_A Cytotoxic granule-assoc 98.8 4E-09 1.4E-13 63.2 5.1 61 14-74 29-92 (115)
117 2fy1_A RNA-binding motif prote 98.8 3.8E-09 1.3E-13 64.0 5.0 37 38-74 47-83 (116)
118 1x4g_A Nucleolysin TIAR; struc 98.8 1.4E-08 4.6E-13 60.5 7.3 39 35-73 57-95 (109)
119 2ki2_A SS-DNA binding protein 98.8 8.7E-10 3E-14 63.5 2.0 36 38-74 42-77 (90)
120 2cqi_A Nucleolysin TIAR; RNA r 98.8 9.5E-09 3.3E-13 60.4 6.5 37 38-74 54-90 (103)
121 2ywk_A Putative RNA-binding pr 98.8 3.2E-09 1.1E-13 61.5 4.3 35 38-72 56-90 (95)
122 2d9p_A Polyadenylate-binding p 98.8 7.4E-09 2.5E-13 60.9 5.9 37 38-74 54-90 (103)
123 4f25_A Polyadenylate-binding p 98.8 3.8E-09 1.3E-13 63.8 4.7 37 2-38 44-80 (115)
124 2do0_A HnRNP M, heterogeneous 98.8 6.5E-09 2.2E-13 62.1 5.7 61 14-74 29-91 (114)
125 2err_A Ataxin-2-binding protei 98.8 3.7E-09 1.3E-13 63.3 4.6 35 38-72 68-102 (109)
126 1p27_B RNA-binding protein 8A; 98.8 6.8E-09 2.3E-13 61.3 5.7 36 38-73 64-99 (106)
127 2cpi_A CCR4-NOT transcription 98.8 5.2E-09 1.8E-13 62.7 5.2 37 2-38 62-98 (111)
128 2do4_A Squamous cell carcinoma 98.8 9.9E-09 3.4E-13 60.1 6.3 36 38-73 57-92 (100)
129 2khc_A Testis-specific RNP-typ 98.8 6.6E-09 2.3E-13 62.5 5.6 35 38-72 81-115 (118)
130 1wel_A RNA-binding protein 12; 98.8 2.3E-09 8E-14 65.4 3.6 64 10-74 35-101 (124)
131 2e5i_A Heterogeneous nuclear r 98.8 1.1E-08 3.6E-13 63.4 6.6 60 10-72 35-97 (124)
132 2db1_A Heterogeneous nuclear r 98.8 4.1E-09 1.4E-13 64.0 4.7 37 37-74 59-95 (118)
133 2lkz_A RNA-binding protein 5; 98.8 2.5E-09 8.7E-14 63.1 3.6 38 2-39 52-93 (95)
134 2cqp_A RNA-binding protein 12; 98.8 6.3E-09 2.2E-13 60.6 5.2 38 2-39 56-93 (98)
135 2pe8_A Splicing factor 45; RRM 98.8 5.7E-09 1.9E-13 62.7 5.0 37 2-38 55-91 (105)
136 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.8 9.3E-09 3.2E-13 63.2 6.1 35 38-72 104-138 (140)
137 3lqv_A PRE-mRNA branch site pr 98.8 3E-09 1E-13 63.8 3.7 60 14-73 22-81 (115)
138 2e5h_A Zinc finger CCHC-type a 98.8 6.2E-09 2.1E-13 60.2 4.9 37 2-38 57-93 (94)
139 3md1_A Nuclear and cytoplasmic 98.8 7E-09 2.4E-13 58.6 5.0 38 2-39 42-79 (83)
140 1u6f_A Tcubp1, RNA-binding pro 98.8 7.3E-09 2.5E-13 63.9 5.5 61 14-74 56-119 (139)
141 3tyt_A Heterogeneous nuclear r 98.8 6E-09 2.1E-13 68.8 5.4 60 13-74 18-77 (205)
142 3bs9_A Nucleolysin TIA-1 isofo 98.8 6.5E-09 2.2E-13 59.2 4.8 38 2-39 47-84 (87)
143 2a3j_A U1 small nuclear ribonu 98.8 3.2E-09 1.1E-13 65.8 3.8 38 2-39 71-108 (127)
144 2jrs_A RNA-binding protein 39; 98.8 3.9E-09 1.3E-13 63.2 4.0 59 14-72 40-101 (108)
145 2dgp_A Bruno-like 4, RNA bindi 98.8 6.2E-09 2.1E-13 61.5 4.8 37 38-74 54-93 (106)
146 1fj7_A Nucleolin RBD1, protein 98.8 3E-09 1E-13 62.4 3.4 38 36-74 55-92 (101)
147 1why_A Hypothetical protein ri 98.8 1.1E-08 3.8E-13 59.6 5.8 58 13-73 30-89 (97)
148 1x4h_A RNA-binding protein 28; 98.8 8.6E-09 2.9E-13 61.2 5.4 60 13-72 28-96 (111)
149 2jwn_A Embryonic polyadenylate 98.8 1.6E-08 5.6E-13 61.2 6.7 63 11-74 47-112 (124)
150 1h2v_Z 20 kDa nuclear CAP bind 98.8 8.9E-09 3E-13 64.8 5.7 61 14-74 53-116 (156)
151 1s79_A Lupus LA protein; RRM, 98.8 3E-09 1E-13 63.5 3.3 63 11-74 22-86 (103)
152 2cq4_A RNA binding motif prote 98.8 7.1E-09 2.4E-13 62.1 4.9 59 14-73 39-100 (114)
153 3beg_B Splicing factor, argini 98.8 1E-08 3.5E-13 61.9 5.6 55 11-70 27-82 (115)
154 2dgx_A KIAA0430 protein; RRM d 98.8 7.6E-09 2.6E-13 60.5 4.8 37 3-39 52-88 (96)
155 2fc8_A NCL protein; structure 98.8 6.5E-09 2.2E-13 61.0 4.6 38 2-39 53-90 (102)
156 3v4m_A Splicing factor U2AF 65 98.8 7.1E-09 2.4E-13 62.2 4.7 36 2-37 58-93 (105)
157 2div_A TRNA selenocysteine ass 98.8 6.1E-09 2.1E-13 60.8 4.3 55 14-68 23-81 (99)
158 3p5t_L Cleavage and polyadenyl 98.8 1.7E-09 5.8E-14 62.5 1.9 38 2-39 44-81 (90)
159 2e5g_A U6 snRNA-specific termi 98.8 1.6E-08 5.5E-13 58.7 6.1 61 11-75 19-80 (94)
160 3q2s_C Cleavage and polyadenyl 98.8 2.6E-09 8.8E-14 71.8 3.0 65 10-74 78-147 (229)
161 2dgv_A HnRNP M, heterogeneous 98.8 5.4E-09 1.9E-13 60.2 4.0 59 14-72 22-81 (92)
162 2krb_A Eukaryotic translation 98.8 2.2E-09 7.4E-14 60.9 2.1 34 2-35 46-80 (81)
163 2cqc_A Arginine/serine-rich sp 98.8 1E-08 3.4E-13 59.3 5.0 38 2-39 56-93 (95)
164 2dhg_A TRNA selenocysteine ass 98.8 5.6E-09 1.9E-13 61.5 3.9 61 14-74 23-87 (104)
165 2mss_A Protein (musashi1); RNA 98.8 3.3E-09 1.1E-13 59.0 2.8 34 38-72 40-73 (75)
166 2x1f_A MRNA 3'-END-processing 98.8 1.1E-08 3.7E-13 59.6 5.1 38 2-39 43-80 (96)
167 1x5t_A Splicing factor 3B subu 98.8 1.1E-08 3.6E-13 59.4 5.0 37 2-38 47-83 (96)
168 2kxn_B Transformer-2 protein h 98.8 9.6E-09 3.3E-13 63.4 5.1 34 38-71 87-120 (129)
169 2ek1_A RNA-binding protein 12; 98.8 1.1E-08 3.8E-13 59.2 4.9 37 2-38 56-92 (95)
170 3ucg_A Polyadenylate-binding p 98.8 7.8E-09 2.7E-13 59.1 4.2 35 38-73 47-81 (89)
171 3ex7_B RNA-binding protein 8A; 98.8 1.4E-08 4.7E-13 61.7 5.6 37 38-74 63-99 (126)
172 2cph_A RNA binding motif prote 98.8 1.2E-08 4E-13 60.3 5.1 36 38-73 57-93 (107)
173 2cpf_A RNA binding motif prote 98.8 1.3E-08 4.5E-13 59.3 5.2 38 2-39 49-86 (98)
174 2j76_E EIF-4B, EIF4B, eukaryot 98.8 4.7E-09 1.6E-13 61.8 3.3 35 38-73 60-94 (100)
175 3ns6_A Eukaryotic translation 98.8 5.2E-09 1.8E-13 61.7 3.4 37 2-38 53-90 (100)
176 2cqd_A RNA-binding region cont 98.8 1.4E-08 4.6E-13 61.0 5.3 61 13-74 30-93 (116)
177 2ywk_A Putative RNA-binding pr 98.8 9.4E-09 3.2E-13 59.5 4.4 38 2-39 56-93 (95)
178 1fjc_A Nucleolin RBD2, protein 98.8 1.1E-08 3.7E-13 59.4 4.7 37 2-38 52-88 (96)
179 2lxi_A RNA-binding protein 10; 98.8 1E-08 3.6E-13 59.6 4.6 38 2-39 43-81 (91)
180 1wg1_A KIAA1579 protein, homol 98.8 7.6E-09 2.6E-13 59.5 4.0 38 2-39 39-76 (88)
181 1p1t_A Cleavage stimulation fa 98.8 1.1E-08 3.8E-13 60.1 4.8 61 14-74 22-85 (104)
182 2ad9_A Polypyrimidine tract-bi 98.8 6.5E-09 2.2E-13 64.0 3.8 61 11-74 42-104 (119)
183 1sjr_A Polypyrimidine tract-bi 98.7 4.4E-09 1.5E-13 68.1 3.1 62 10-72 56-119 (164)
184 1x4f_A Matrin 3; structural ge 98.7 3.5E-09 1.2E-13 64.6 2.5 58 14-74 40-99 (112)
185 2cqi_A Nucleolysin TIAR; RNA r 98.7 1.6E-08 5.3E-13 59.5 5.2 38 2-39 54-91 (103)
186 2xnq_A Nuclear polyadenylated 98.7 1.5E-08 5.1E-13 59.5 5.1 39 2-40 56-94 (97)
187 3egn_A RNA-binding protein 40; 98.7 1.9E-08 6.4E-13 62.5 5.8 65 10-74 55-127 (143)
188 4a8x_A RNA-binding protein wit 98.7 1.2E-08 4.3E-13 58.0 4.6 37 2-38 46-82 (88)
189 2fc9_A NCL protein; structure 98.7 1.5E-08 5E-13 59.4 5.0 38 2-39 52-89 (101)
190 1x4a_A Splicing factor, argini 98.7 1.5E-08 5E-13 60.3 5.1 38 2-39 60-97 (109)
191 2hgl_A HNRPF protein, heteroge 98.7 4.9E-09 1.7E-13 65.7 3.1 64 10-74 54-122 (136)
192 2dit_A HIV TAT specific factor 98.7 1.5E-08 5.1E-13 60.9 5.1 38 2-39 63-100 (112)
193 2d9o_A DNAJ (HSP40) homolog, s 98.7 4E-08 1.4E-12 58.6 6.9 54 14-71 31-84 (100)
194 1x5p_A Negative elongation fac 98.7 1.8E-08 6.1E-13 58.8 5.3 38 2-39 48-85 (97)
195 2la6_A RNA-binding protein FUS 98.7 6.5E-09 2.2E-13 60.8 3.4 37 2-38 62-98 (99)
196 3ulh_A THO complex subunit 4; 98.7 1.5E-08 5.1E-13 59.9 4.9 38 2-39 69-106 (107)
197 2cpe_A RNA-binding protein EWS 98.7 1.6E-08 5.4E-13 60.4 5.1 38 2-39 64-101 (113)
198 2nlw_A Eukaryotic translation 98.7 7.8E-09 2.7E-13 61.4 3.7 39 2-40 60-99 (105)
199 2cq0_A Eukaryotic translation 98.7 1.6E-08 5.5E-13 59.4 5.0 37 2-38 56-92 (103)
200 1wez_A HnRNP H', FTP-3, hetero 98.7 4.3E-09 1.5E-13 62.5 2.5 36 38-74 54-89 (102)
201 1whw_A Hypothetical protein ri 98.7 1.4E-08 4.9E-13 59.2 4.7 37 2-38 49-85 (99)
202 2dng_A Eukaryotic translation 98.7 1.8E-08 6.3E-13 59.3 5.1 37 2-39 55-91 (103)
203 1x4e_A RNA binding motif, sing 98.7 3.5E-09 1.2E-13 60.3 1.8 33 38-70 46-78 (85)
204 2cpy_A RNA-binding protein 12; 98.7 1.9E-08 6.4E-13 60.5 5.1 37 38-75 56-92 (114)
205 1wg5_A Heterogeneous nuclear r 98.7 1.3E-08 4.4E-13 60.4 4.3 36 38-74 56-91 (104)
206 2cqb_A Peptidyl-prolyl CIS-tra 98.7 1.4E-08 4.7E-13 59.6 4.4 38 2-39 53-90 (102)
207 3pgw_S U1-70K; protein-RNA com 98.7 3E-08 1E-12 72.2 7.1 64 12-75 114-180 (437)
208 1rk8_A CG8781-PA, CG8781-PA pr 98.7 3E-08 1E-12 63.1 6.2 37 38-74 113-149 (165)
209 2cpd_A Apobec-1 stimulating pr 98.7 2E-08 6.8E-13 58.7 4.9 38 2-39 50-87 (99)
210 2ytc_A PRE-mRNA-splicing facto 98.7 1.7E-08 5.7E-13 57.3 4.4 37 2-38 47-84 (85)
211 2cqh_A IGF-II mRNA-binding pro 98.7 1.3E-08 4.5E-13 58.8 4.0 38 2-39 43-81 (93)
212 2cpz_A CUG triplet repeat RNA- 98.7 1.7E-08 5.9E-13 60.5 4.7 38 2-39 66-103 (115)
213 2lmi_A GRSF-1, G-rich sequence 98.7 5.8E-09 2E-13 62.2 2.5 37 37-74 53-89 (107)
214 2khc_A Testis-specific RNP-typ 98.7 1.1E-08 3.9E-13 61.4 3.9 37 2-38 81-117 (118)
215 2dgw_A Probable RNA-binding pr 98.7 2E-08 6.9E-13 57.8 4.8 37 2-39 49-85 (91)
216 2e5j_A Methenyltetrahydrofolat 98.7 9E-09 3.1E-13 60.1 3.3 38 2-39 55-92 (97)
217 1nu4_A U1A RNA binding domain; 98.7 1.6E-08 5.5E-13 58.7 4.3 38 2-39 50-87 (97)
218 3s7r_A Heterogeneous nuclear r 98.7 2.4E-08 8.3E-13 56.9 5.0 58 14-72 25-85 (87)
219 2dgo_A Cytotoxic granule-assoc 98.7 2.2E-08 7.5E-13 59.9 5.0 37 2-38 56-92 (115)
220 2cq3_A RNA-binding protein 9; 98.7 2.4E-08 8.1E-13 58.7 5.1 37 2-38 54-90 (103)
221 2dnh_A Bruno-like 5, RNA bindi 98.7 1.6E-08 5.4E-13 59.6 4.3 61 13-73 28-93 (105)
222 3n9u_C Cleavage and polyadenyl 98.7 2E-08 6.7E-13 64.0 5.0 37 2-38 98-134 (156)
223 2dnr_A Synaptojanin-1; RRM dom 98.7 3.8E-08 1.3E-12 58.1 5.8 44 29-73 39-82 (91)
224 2dis_A Unnamed protein product 98.7 1.3E-08 4.4E-13 60.4 3.8 38 37-74 50-89 (109)
225 3ucg_A Polyadenylate-binding p 98.7 2.3E-08 8E-13 57.1 4.8 37 2-39 47-83 (89)
226 2do4_A Squamous cell carcinoma 98.7 1.8E-08 6.3E-13 58.9 4.5 38 2-39 57-94 (100)
227 2err_A Ataxin-2-binding protei 98.7 1.6E-08 5.4E-13 60.5 4.1 38 2-39 68-105 (109)
228 2dnz_A Probable RNA-binding pr 98.7 1.3E-08 4.3E-13 58.9 3.6 37 2-38 46-82 (95)
229 3ue2_A Poly(U)-binding-splicin 98.7 2.2E-08 7.5E-13 61.4 4.7 36 2-37 70-105 (118)
230 2lcw_A RNA-binding protein FUS 98.1 2.2E-09 7.5E-14 64.7 0.0 38 37-74 55-92 (116)
231 1oo0_B CG8781-PA, drosophila Y 98.7 2.9E-08 9.8E-13 59.0 4.8 37 2-38 67-103 (110)
232 2hzc_A Splicing factor U2AF 65 98.7 3.4E-08 1.2E-12 56.1 5.0 34 2-36 52-85 (87)
233 1x5u_A Splicing factor 3B subu 98.7 1.7E-08 5.8E-13 59.4 3.8 37 2-38 56-92 (105)
234 1fj7_A Nucleolin RBD1, protein 98.7 1.6E-08 5.3E-13 59.3 3.6 37 2-39 57-93 (101)
235 2dh8_A DAZ-associated protein 98.7 3.4E-08 1.2E-12 58.2 5.0 58 14-72 30-90 (105)
236 3s6e_A RNA-binding protein 39; 98.7 2.3E-08 8E-13 60.9 4.3 36 2-37 54-89 (114)
237 2cpx_A Hypothetical protein FL 98.7 2.1E-08 7.3E-13 59.9 4.0 37 2-38 66-102 (115)
238 1uaw_A Mouse-musashi-1; RNP-ty 98.7 1.2E-08 4E-13 56.9 2.6 59 14-73 14-75 (77)
239 3dxb_A Thioredoxin N-terminall 98.7 4.9E-08 1.7E-12 64.5 6.1 42 38-82 174-215 (222)
240 1wi8_A EIF-4B, eukaryotic tran 98.7 3.4E-08 1.2E-12 58.2 4.7 36 2-38 56-91 (104)
241 2la4_A Nuclear and cytoplasmic 98.7 1.6E-08 5.4E-13 59.3 3.3 38 2-39 62-99 (101)
242 2fy1_A RNA-binding motif prote 98.7 2.2E-08 7.4E-13 60.6 3.9 38 2-39 47-84 (116)
243 2do0_A HnRNP M, heterogeneous 98.6 3.6E-08 1.2E-12 58.8 4.8 38 2-39 55-92 (114)
244 2dgv_A HnRNP M, heterogeneous 98.6 1.3E-08 4.4E-13 58.6 2.7 38 2-39 47-84 (92)
245 2e44_A Insulin-like growth fac 98.6 3.2E-08 1.1E-12 57.4 4.4 65 10-74 25-89 (96)
246 2rs2_A Musashi-1, RNA-binding 98.6 4.4E-08 1.5E-12 58.6 5.0 59 14-73 39-100 (109)
247 2d9p_A Polyadenylate-binding p 98.6 2.1E-08 7.1E-13 59.0 3.5 38 2-39 54-91 (103)
248 3egn_A RNA-binding protein 40; 98.6 3.8E-08 1.3E-12 61.1 4.9 38 2-39 91-128 (143)
249 1x4b_A Heterogeneous nuclear r 98.6 6E-08 2.1E-12 58.1 5.6 60 14-74 41-103 (116)
250 2f3j_A RNA and export factor b 98.6 2.7E-08 9.2E-13 64.5 4.4 37 38-74 128-164 (177)
251 1p1t_A Cleavage stimulation fa 98.6 2.2E-08 7.4E-13 58.8 3.6 38 2-39 49-86 (104)
252 2jrs_A RNA-binding protein 39; 98.6 2E-08 6.9E-13 60.0 3.5 38 2-39 67-104 (108)
253 1u6f_A Tcubp1, RNA-binding pro 98.6 3.5E-08 1.2E-12 60.8 4.6 37 2-38 83-119 (139)
254 1h2v_Z 20 kDa nuclear CAP bind 98.6 4.5E-08 1.5E-12 61.6 5.2 39 2-40 80-118 (156)
255 1x5s_A Cold-inducible RNA-bind 98.6 1.8E-08 6.2E-13 59.0 3.1 37 2-38 53-89 (102)
256 2dnm_A SRP46 splicing factor; 98.6 1.2E-08 4.2E-13 60.0 2.3 38 2-39 54-91 (103)
257 1x4g_A Nucleolysin TIAR; struc 98.6 4.6E-08 1.6E-12 58.1 4.9 37 3-39 61-97 (109)
258 2jvo_A Nucleolar protein 3; nu 98.6 4.5E-08 1.6E-12 58.6 4.8 37 3-39 65-101 (108)
259 2cph_A RNA binding motif prote 98.6 2.8E-08 9.6E-13 58.6 3.8 37 2-38 57-94 (107)
260 2dnl_A Cytoplasmic polyadenyla 98.6 4.9E-08 1.7E-12 58.7 4.9 40 37-76 50-100 (114)
261 2m2b_A RNA-binding protein 10; 98.6 1.4E-08 5E-13 62.4 2.6 61 13-74 36-105 (131)
262 1p27_B RNA-binding protein 8A; 98.6 2.4E-08 8E-13 58.9 3.4 37 2-38 64-100 (106)
263 3r27_A HnRNP L, heterogeneous 98.6 2.5E-08 8.4E-13 59.8 3.5 38 2-39 56-95 (100)
264 3pgw_A U1-A; protein-RNA compl 98.6 6.2E-08 2.1E-12 65.6 5.9 56 19-74 32-87 (282)
265 3u1l_A PRE-mRNA-splicing facto 98.6 7.4E-08 2.5E-12 65.6 6.3 56 14-72 157-224 (240)
266 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.6 4.9E-08 1.7E-12 59.9 4.9 36 2-37 104-139 (140)
267 2diu_A KIAA0430 protein; struc 98.6 2.1E-08 7.3E-13 59.7 3.1 37 3-39 46-82 (96)
268 2hgl_A HNRPF protein, heteroge 98.6 4.6E-08 1.6E-12 61.2 4.7 47 2-58 87-133 (136)
269 2j76_E EIF-4B, EIF4B, eukaryot 98.6 1.8E-08 6.3E-13 59.2 2.7 37 2-39 60-96 (100)
270 2dgt_A RNA-binding protein 30; 98.6 6E-08 2E-12 56.0 4.9 38 2-39 43-80 (92)
271 1x5o_A RNA binding motif, sing 98.6 6.1E-08 2.1E-12 57.9 5.1 29 38-66 65-93 (114)
272 2dnq_A RNA-binding protein 4B; 98.6 3.5E-08 1.2E-12 56.7 3.8 37 3-39 42-78 (90)
273 2mss_A Protein (musashi1); RNA 98.6 3.1E-08 1.1E-12 55.0 3.5 35 2-37 40-74 (75)
274 2jwn_A Embryonic polyadenylate 98.6 6.6E-08 2.3E-12 58.5 5.1 37 2-39 77-113 (124)
275 2dgu_A Heterogeneous nuclear r 98.6 4.8E-08 1.7E-12 57.5 4.4 37 2-38 44-80 (103)
276 2dnn_A RNA-binding protein 12; 98.6 6E-08 2.1E-12 58.5 4.8 36 2-38 55-90 (109)
277 1whx_A Hypothetical protein ri 98.6 2.8E-08 9.6E-13 59.7 3.3 39 2-40 45-83 (111)
278 2div_A TRNA selenocysteine ass 98.6 3E-08 1E-12 57.8 3.4 38 2-39 51-92 (99)
279 1wf1_A RNA-binding protein RAL 98.6 2.6E-08 8.9E-13 59.3 3.1 38 2-39 61-98 (110)
280 2db1_A Heterogeneous nuclear r 98.6 6E-08 2.1E-12 58.8 4.7 49 2-60 60-108 (118)
281 2kn4_A Immunoglobulin G-bindin 98.6 4.9E-08 1.7E-12 61.3 4.5 38 2-39 111-148 (158)
282 2dnp_A RNA-binding protein 14; 98.6 6.4E-08 2.2E-12 55.6 4.5 38 2-39 42-79 (90)
283 1x4h_A RNA-binding protein 28; 98.6 7.1E-08 2.4E-12 57.2 4.8 37 2-38 56-98 (111)
284 2dgs_A DAZ-associated protein 98.6 4.3E-08 1.5E-12 57.2 3.8 36 2-38 51-86 (99)
285 2kt5_A RNA and export factor-b 98.6 5.5E-08 1.9E-12 59.0 4.4 37 2-38 75-111 (124)
286 2bz2_A Negative elongation fac 98.6 3.7E-08 1.3E-12 60.2 3.5 38 2-39 72-109 (121)
287 2cpj_A Non-POU domain-containi 98.6 2.8E-08 9.4E-13 58.1 2.8 38 2-39 50-87 (99)
288 2kxn_B Transformer-2 protein h 98.6 3.5E-08 1.2E-12 60.9 3.3 38 2-39 87-124 (129)
289 3zzy_A Polypyrimidine tract-bi 98.6 1E-07 3.6E-12 59.5 5.5 38 2-39 64-104 (130)
290 3md3_A Nuclear and cytoplasmic 98.6 7.6E-08 2.6E-12 59.7 4.9 37 2-38 128-164 (166)
291 2hgn_A Heterogeneous nuclear r 98.6 1.2E-08 4.1E-13 64.2 1.1 36 38-74 85-120 (139)
292 2hvz_A Splicing factor, argini 98.6 2E-08 6.8E-13 58.9 2.0 38 2-39 36-73 (101)
293 2cq2_A Hypothetical protein LO 98.6 6.2E-08 2.1E-12 59.2 4.3 37 2-38 62-103 (114)
294 2g4b_A Splicing factor U2AF 65 98.6 1.5E-07 5E-12 59.0 6.2 39 34-73 46-84 (172)
295 1why_A Hypothetical protein ri 98.6 4.9E-08 1.7E-12 56.8 3.7 37 3-39 53-91 (97)
296 2dnh_A Bruno-like 5, RNA bindi 98.6 4.3E-08 1.5E-12 57.7 3.5 37 2-38 55-94 (105)
297 2yh0_A Splicing factor U2AF 65 98.6 2E-07 6.7E-12 59.6 6.8 40 34-74 46-85 (198)
298 2cq4_A RNA binding motif prote 98.6 5.5E-08 1.9E-12 58.2 3.9 36 2-38 66-101 (114)
299 1b7f_A Protein (SXL-lethal pro 98.6 2E-07 6.7E-12 58.1 6.6 59 15-73 18-79 (168)
300 2i2y_A Fusion protein consists 98.6 4.4E-08 1.5E-12 61.2 3.6 38 2-39 109-146 (150)
301 4f02_A Polyadenylate-binding p 98.6 7E-08 2.4E-12 63.4 4.7 38 2-39 142-179 (213)
302 2dha_A FLJ20171 protein; RRM d 98.6 3E-08 1E-12 61.1 2.7 36 38-74 67-102 (123)
303 3tht_A Alkylated DNA repair pr 98.6 2.5E-07 8.5E-12 65.9 7.6 53 10-65 30-82 (345)
304 1iqt_A AUF1, heterogeneous nuc 98.6 3E-08 1E-12 55.0 2.3 34 38-72 40-73 (75)
305 1sjq_A Polypyrimidine tract-bi 98.5 5.6E-08 1.9E-12 58.6 3.6 38 2-39 51-90 (105)
306 1s79_A Lupus LA protein; RRM, 98.5 4.3E-08 1.5E-12 58.4 3.1 37 2-39 51-87 (103)
307 2dis_A Unnamed protein product 98.5 6.6E-08 2.3E-12 57.2 3.9 38 2-39 51-90 (109)
308 1x4d_A Matrin 3; structural ge 98.5 4.6E-08 1.6E-12 58.5 3.2 39 2-40 51-91 (102)
309 2dgp_A Bruno-like 4, RNA bindi 98.5 6.5E-08 2.2E-12 57.0 3.8 37 2-38 54-93 (106)
310 1sjr_A Polypyrimidine tract-bi 98.5 7.3E-08 2.5E-12 62.4 4.3 39 2-40 83-123 (164)
311 3ex7_B RNA-binding protein 8A; 98.5 4.9E-08 1.7E-12 59.2 3.3 36 2-37 63-98 (126)
312 2kvi_A Nuclear polyadenylated 98.5 3.4E-08 1.1E-12 57.6 2.4 38 2-39 44-81 (96)
313 2ki2_A SS-DNA binding protein 98.5 3.3E-08 1.1E-12 56.7 2.2 36 2-38 42-77 (90)
314 1wel_A RNA-binding protein 12; 98.5 3.6E-08 1.2E-12 60.0 2.5 36 2-38 66-101 (124)
315 1x4e_A RNA binding motif, sing 98.5 8.2E-09 2.8E-13 58.7 -0.4 37 2-38 46-82 (85)
316 1fxl_A Paraneoplastic encephal 98.5 2.7E-07 9.1E-12 57.3 6.5 60 14-73 16-78 (167)
317 2dhg_A TRNA selenocysteine ass 98.5 3.2E-08 1.1E-12 58.1 2.1 37 2-38 50-87 (104)
318 2cqg_A TDP-43, TAR DNA-binding 98.5 1.6E-07 5.5E-12 55.1 5.2 59 13-73 28-89 (103)
319 2cqd_A RNA-binding region cont 98.5 1.2E-07 4.3E-12 56.7 4.7 36 2-38 58-93 (116)
320 2hgm_A HNRPF protein, heteroge 98.5 3.5E-08 1.2E-12 61.1 2.3 36 38-74 83-118 (126)
321 2cpy_A RNA-binding protein 12; 98.5 1.3E-07 4.3E-12 56.8 4.6 36 2-38 56-91 (114)
322 2lea_A Serine/arginine-rich sp 98.5 4.9E-08 1.7E-12 60.6 2.7 38 2-39 88-125 (135)
323 3lqv_A PRE-mRNA branch site pr 98.5 7.4E-08 2.5E-12 57.6 3.4 37 2-38 46-82 (115)
324 1x4c_A Splicing factor, argini 98.5 1.6E-07 5.5E-12 55.8 4.8 34 4-37 51-89 (108)
325 1fje_B Nucleolin RBD12, protei 98.5 1.2E-07 4E-12 59.8 4.4 38 2-39 135-172 (175)
326 2cq1_A PTB-like protein L; RRM 98.5 1.7E-07 6E-12 55.7 4.9 37 3-39 51-89 (101)
327 1rk8_A CG8781-PA, CG8781-PA pr 98.5 1.4E-07 4.8E-12 60.0 4.7 37 2-38 113-149 (165)
328 2qfj_A FBP-interacting repress 98.5 1.5E-07 5.2E-12 60.9 4.7 35 38-72 69-103 (216)
329 3q2s_C Cleavage and polyadenyl 98.5 6.9E-08 2.4E-12 64.8 2.9 37 2-38 111-147 (229)
330 2m2b_A RNA-binding protein 10; 98.5 3.3E-08 1.1E-12 60.7 1.0 38 2-40 66-107 (131)
331 2lcw_A RNA-binding protein FUS 97.8 2.1E-08 7.3E-13 60.2 0.0 37 2-38 56-92 (116)
332 1wez_A HnRNP H', FTP-3, hetero 98.5 7.3E-08 2.5E-12 57.2 2.3 35 2-37 54-88 (102)
333 2adc_A Polypyrimidine tract-bi 98.4 2.1E-07 7.1E-12 61.7 4.7 36 39-74 72-107 (229)
334 2j8a_A Histone-lysine N-methyl 98.4 1.8E-07 6.1E-12 58.8 4.1 64 9-72 15-91 (136)
335 3s7r_A Heterogeneous nuclear r 98.4 2.5E-07 8.7E-12 52.6 4.4 35 2-37 52-86 (87)
336 2lmi_A GRSF-1, G-rich sequence 98.4 7.8E-08 2.7E-12 57.2 2.1 48 2-59 54-101 (107)
337 1uaw_A Mouse-musashi-1; RNP-ty 98.4 8E-08 2.7E-12 53.4 2.0 35 2-37 41-75 (77)
338 2xs2_A Deleted in azoospermia- 98.4 2E-07 6.9E-12 54.6 3.9 59 14-74 23-83 (102)
339 1x4f_A Matrin 3; structural ge 98.4 7E-08 2.4E-12 58.8 1.8 39 2-40 61-101 (112)
340 1x4b_A Heterogeneous nuclear r 98.4 3.4E-07 1.2E-11 54.8 4.7 36 2-38 68-103 (116)
341 1ufw_A Synaptojanin 2; RNP dom 98.4 3E-07 1E-11 54.6 4.3 43 29-72 48-90 (95)
342 1wg5_A Heterogeneous nuclear r 98.4 1.9E-07 6.7E-12 55.1 3.4 36 2-38 56-91 (104)
343 1wex_A Hypothetical protein (r 98.4 1E-07 3.4E-12 57.0 2.0 38 2-39 50-89 (104)
344 3sde_A Paraspeckle component 1 98.4 8.5E-07 2.9E-11 59.8 6.8 56 14-72 36-91 (261)
345 1x5o_A RNA binding motif, sing 98.4 2E-07 6.8E-12 55.6 3.2 36 2-37 65-108 (114)
346 2dh8_A DAZ-associated protein 98.4 1.7E-07 5.7E-12 55.2 2.8 36 2-38 57-92 (105)
347 3tht_A Alkylated DNA repair pr 98.4 1.3E-06 4.6E-11 62.1 7.7 59 2-60 55-133 (345)
348 2e5i_A Heterogeneous nuclear r 98.4 4.4E-07 1.5E-11 56.0 4.7 38 3-40 61-101 (124)
349 2f3j_A RNA and export factor b 98.4 2.7E-07 9.2E-12 59.7 3.7 37 2-38 128-164 (177)
350 3nmr_A Cugbp ELAV-like family 98.4 2.1E-07 7.3E-12 58.2 3.2 53 13-65 16-73 (175)
351 2ad9_A Polypyrimidine tract-bi 98.4 1.9E-07 6.5E-12 57.4 2.8 37 3-39 67-105 (119)
352 1qm9_A Polypyrimidine tract-bi 98.4 2.4E-07 8.1E-12 59.6 3.2 56 14-74 18-76 (198)
353 3pgw_S U1-70K; protein-RNA com 98.3 5.2E-07 1.8E-11 65.7 5.2 38 2-39 143-180 (437)
354 2voo_A Lupus LA protein; RNA-b 98.3 7.3E-07 2.5E-11 58.3 5.4 62 12-74 121-184 (193)
355 2rs2_A Musashi-1, RNA-binding 98.3 5.8E-07 2E-11 53.6 4.5 36 2-38 66-101 (109)
356 2dha_A FLJ20171 protein; RRM d 98.3 4.2E-07 1.4E-11 55.9 4.0 47 2-58 67-113 (123)
357 2d9o_A DNAJ (HSP40) homolog, s 98.3 4.7E-07 1.6E-11 53.9 4.0 36 2-39 53-88 (100)
358 1l3k_A Heterogeneous nuclear r 98.3 7.8E-07 2.7E-11 56.7 5.3 60 14-74 27-89 (196)
359 1iqt_A AUF1, heterogeneous nuc 98.3 1.9E-07 6.6E-12 51.6 1.9 35 2-37 40-74 (75)
360 2cqg_A TDP-43, TAR DNA-binding 98.3 1.4E-06 4.9E-11 50.9 5.1 35 2-38 56-90 (103)
361 3beg_B Splicing factor, argini 98.3 4.5E-07 1.6E-11 54.6 3.0 29 4-32 52-80 (115)
362 3d2w_A TAR DNA-binding protein 98.2 1.4E-06 4.8E-11 50.2 4.5 59 10-74 21-81 (89)
363 3dxb_A Thioredoxin N-terminall 98.2 7.1E-07 2.4E-11 58.9 3.5 36 2-37 174-209 (222)
364 2hgn_A Heterogeneous nuclear r 98.2 1.7E-07 5.7E-12 58.9 0.4 35 2-37 85-119 (139)
365 2cjk_A Nuclear polyadenylated 98.2 6.9E-07 2.4E-11 55.6 3.3 36 2-38 128-163 (167)
366 2hgm_A HNRPF protein, heteroge 98.2 4.1E-07 1.4E-11 56.3 1.8 35 2-37 83-117 (126)
367 2j8a_A Histone-lysine N-methyl 98.2 1.3E-06 4.5E-11 54.8 3.7 39 1-39 46-94 (136)
368 3u1l_A PRE-mRNA-splicing facto 98.2 1.1E-06 3.6E-11 59.9 3.5 38 2-39 178-227 (240)
369 2voo_A Lupus LA protein; RNA-b 98.2 2.6E-06 8.9E-11 55.7 4.9 39 2-41 149-187 (193)
370 2e44_A Insulin-like growth fac 98.1 2.5E-06 8.4E-11 49.2 4.0 36 3-38 54-89 (96)
371 2xs2_A Deleted in azoospermia- 98.1 1.3E-06 4.5E-11 51.0 2.7 34 2-37 49-82 (102)
372 2e5g_A U6 snRNA-specific termi 98.1 2.2E-06 7.4E-11 49.5 3.5 32 5-37 47-78 (94)
373 2dnl_A Cytoplasmic polyadenyla 98.1 2.5E-06 8.5E-11 51.0 3.7 32 2-35 51-82 (114)
374 2dnr_A Synaptojanin-1; RRM dom 98.1 5.8E-06 2E-10 48.7 4.8 35 4-39 50-84 (91)
375 1wf0_A TDP-43, TAR DNA-binding 98.1 4.1E-06 1.4E-10 47.7 3.9 35 38-74 41-75 (88)
376 1ufw_A Synaptojanin 2; RNP dom 97.9 1.2E-05 4E-10 47.7 3.6 31 6-37 61-91 (95)
377 3d2w_A TAR DNA-binding protein 97.9 2.3E-05 7.9E-10 45.0 4.6 33 2-38 47-81 (89)
378 1wf0_A TDP-43, TAR DNA-binding 97.6 3.3E-05 1.1E-09 43.8 2.7 34 2-37 41-74 (88)
379 2l9w_A U4/U6 snRNA-associated- 97.5 0.00026 9E-09 43.1 5.8 44 31-74 54-97 (117)
380 1owx_A Lupus LA protein, SS-B, 97.2 0.00071 2.4E-08 41.5 5.2 46 29-74 43-93 (121)
381 2l9w_A U4/U6 snRNA-associated- 95.5 0.024 8.3E-07 34.4 4.4 33 4-36 63-95 (117)
382 1wey_A Calcipressin 1; structu 95.4 0.022 7.7E-07 34.0 4.2 34 42-75 49-82 (104)
383 1owx_A Lupus LA protein, SS-B, 95.3 0.012 4.2E-07 35.9 2.7 36 5-40 57-95 (121)
384 1wwh_A Nucleoporin 35, nucleop 94.3 0.15 5E-06 31.1 5.8 44 29-73 47-93 (119)
385 3p3d_A Nucleoporin 53; structu 93.7 0.14 4.7E-06 31.8 4.9 32 38-70 61-92 (132)
386 1wey_A Calcipressin 1; structu 91.9 0.14 4.9E-06 30.5 3.0 32 6-37 49-80 (104)
387 3p3d_A Nucleoporin 53; structu 87.8 0.67 2.3E-05 28.7 3.8 29 6-35 65-93 (132)
388 2dhx_A Poly (ADP-ribose) polym 86.9 1.9 6.4E-05 25.6 5.2 45 28-73 36-80 (104)
389 1wwh_A Nucleoporin 35, nucleop 79.9 2.2 7.6E-05 25.8 3.6 30 5-35 61-91 (119)
390 3lpe_A Putative transcription 76.4 2.6 9E-05 24.0 3.0 25 38-62 49-73 (92)
391 2g0c_A ATP-dependent RNA helic 72.4 3.6 0.00012 22.1 2.8 54 17-73 19-73 (76)
392 2m0o_A PHD finger protein 1; t 70.7 4.8 0.00017 22.5 3.1 26 24-49 39-64 (79)
393 3aqq_A Calcium-regulated heat 69.8 4.5 0.00015 25.3 3.2 26 23-48 58-83 (147)
394 2e5p_A Protein PHF1, PHD finge 68.3 8.3 0.00028 21.0 3.6 26 24-49 22-47 (68)
395 1h95_A CSD, Y-box binding prot 67.6 3.5 0.00012 22.8 2.1 22 27-48 8-29 (79)
396 2eqj_A Metal-response element- 67.5 8.7 0.0003 20.9 3.6 25 24-48 26-50 (66)
397 4hcz_A PHD finger protein 1; p 66.5 9.9 0.00034 20.1 3.6 27 24-50 16-42 (58)
398 1uw4_A UPF3X; nonsense mediate 65.5 5.9 0.0002 22.6 2.9 27 41-67 47-73 (91)
399 2k5n_A Putative cold-shock pro 64.8 6.9 0.00024 21.4 3.0 50 29-79 4-56 (74)
400 1c9o_A CSPB, cold-shock protei 64.4 7.6 0.00026 20.5 3.0 19 30-48 4-22 (66)
401 3cam_A Cold-shock domain famil 61.5 9.1 0.00031 20.4 3.0 19 30-48 4-22 (67)
402 3a0j_A Cold shock protein; OB- 60.9 8.8 0.0003 20.8 2.9 19 30-48 4-22 (73)
403 2kcm_A Cold shock domain famil 60.5 8.4 0.00029 21.1 2.8 19 30-48 3-21 (74)
404 3p8b_B Transcription antitermi 60.2 8.1 0.00028 23.6 3.0 26 38-63 42-67 (152)
405 2l08_A Regulator of nonsense t 59.9 9.7 0.00033 22.1 3.1 26 42-67 56-81 (97)
406 1gh9_A 8.3 kDa protein (gene M 58.9 5.6 0.00019 21.8 1.8 36 29-66 26-61 (71)
407 3i2z_B RNA chaperone, negative 57.1 12 0.00041 20.1 3.0 51 28-79 6-62 (71)
408 4eyt_A Telomerase associated p 56.8 16 0.00053 21.4 3.6 30 32-61 39-68 (129)
409 2e5q_A PHD finger protein 19; 56.4 6.6 0.00023 21.1 1.8 26 24-49 20-45 (63)
410 1g6p_A Cold shock protein TMCS 55.2 12 0.00042 19.7 2.8 17 32-48 5-21 (66)
411 2exu_A Transcription initiatio 54.6 13 0.00043 24.4 3.3 49 25-75 134-183 (200)
412 2yty_A Cold shock domain-conta 54.1 12 0.0004 21.1 2.8 21 26-48 17-37 (88)
413 1whv_A Poly(A)-specific ribonu 54.1 11 0.00039 22.0 2.7 23 38-60 48-70 (100)
414 2ytv_A Cold shock domain-conta 51.8 8.9 0.0003 21.2 2.0 14 36-49 15-28 (79)
415 3h7h_B Transcription elongatio 49.9 15 0.0005 21.5 2.8 39 26-64 37-76 (106)
416 2bh8_A 1B11; transcription, mo 48.2 18 0.00062 20.6 3.0 22 27-48 16-37 (101)
417 2knz_A Ubiquilin-4; cytoplasm, 40.3 20 0.00068 18.1 2.1 16 46-61 23-38 (53)
418 1nz8_A Transcription antitermi 40.2 19 0.00066 20.9 2.3 27 37-63 60-91 (119)
419 3ts2_A Protein LIN-28 homolog 40.0 25 0.00087 21.6 2.9 20 28-47 10-29 (148)
420 3ulj_A LIN28B, DNA-binding pro 38.1 14 0.00047 21.0 1.3 11 36-46 17-27 (90)
421 1x65_A UNR protein; cell-free 37.8 13 0.00044 21.1 1.2 12 37-48 16-27 (89)
422 2lss_A Cold shock-like protein 42.8 7.4 0.00025 20.9 0.0 19 30-48 7-25 (70)
423 1wfq_A UNR protein; beta-barre 36.5 18 0.00062 20.4 1.7 12 37-48 26-37 (89)
424 2ytx_A Cold shock domain-conta 35.3 18 0.00061 20.7 1.5 11 38-48 27-37 (97)
425 3ctr_A Poly(A)-specific ribonu 35.3 10 0.00036 22.2 0.5 29 32-60 31-60 (101)
426 2jy5_A Ubiquilin-1; UBA, alter 34.7 28 0.00096 17.5 2.1 16 46-61 24-39 (52)
427 2bwb_A Ubiquitin-like protein 33.0 32 0.0011 16.8 2.1 17 46-62 19-35 (46)
428 2dah_A Ubiquilin-3; UBA domain 30.2 36 0.0012 17.3 2.1 17 46-62 21-37 (54)
429 1gcc_A Ethylene responsive ele 30.1 29 0.00098 18.2 1.7 16 42-57 29-44 (63)
430 1wr1_B Ubiquitin-like protein 30.0 36 0.0012 17.6 2.1 17 46-62 29-45 (58)
431 3bsu_A Ribonuclease H1, RNAse 29.9 59 0.002 16.4 4.7 19 40-58 32-50 (53)
432 2lfv_A Protein DAMX; cell divi 34.6 12 0.00041 21.9 0.0 22 45-66 70-91 (106)
433 1x60_A Sporulation-specific N- 28.0 71 0.0024 16.7 4.3 53 9-64 16-71 (79)
434 2lsl_A Telomerase associated p 31.8 14 0.00049 21.7 0.0 26 37-62 75-100 (137)
435 1tr8_A Conserved protein (MTH1 25.2 43 0.0015 19.4 2.0 15 48-62 79-93 (102)
436 1z96_A DNA-damage, UBA-domain 24.2 56 0.0019 14.8 2.0 14 48-61 17-30 (40)
437 2nml_A Enhancer of rudimentary 22.3 71 0.0024 18.7 2.5 18 42-59 18-35 (104)
438 2hpu_A NOSL protein; alpha bet 21.5 61 0.0021 20.5 2.3 23 38-60 108-131 (175)
439 2dna_A Unnamed protein product 21.1 69 0.0024 17.1 2.2 17 46-62 31-47 (67)
440 2xk0_A Polycomb protein PCL; t 20.8 1E+02 0.0035 16.7 2.8 25 24-50 28-52 (69)
441 2g3q_A Protein YBL047C; endocy 20.7 65 0.0022 15.1 1.9 14 48-61 17-30 (43)
442 2ooa_A E3 ubiquitin-protein li 20.7 70 0.0024 16.4 2.0 15 48-62 24-38 (52)
443 3kiz_A Phosphoribosylformylgly 20.2 48 0.0016 23.8 1.8 24 38-61 338-361 (394)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=2.9e-18 Score=113.61 Aligned_cols=73 Identities=25% Similarity=0.413 Sum_probs=67.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..+++..+.|+.+.+.+
T Consensus 56 ~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i 135 (213)
T 4f02_A 56 SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 135 (213)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred ccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEe
Confidence 579999999999999999999999999999888762
Q ss_pred ------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 ------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.++++|++||+.|||..|+|++|.+...
T Consensus 136 ~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 136 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp EEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 6899999999999999999999999999999987554
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=4.2e-18 Score=107.05 Aligned_cols=71 Identities=27% Similarity=0.514 Sum_probs=66.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.+.|.+
T Consensus 40 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i 119 (166)
T 3md3_A 40 NVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV 119 (166)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEE
Confidence 579999999999999999999999999999998862
Q ss_pred --------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 --------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 --------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++|+..|||..++|++|.+.
T Consensus 120 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 120 MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 57899999999999999999999999999999653
No 3
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.76 E-value=4.7e-18 Score=108.41 Aligned_cols=69 Identities=22% Similarity=0.457 Sum_probs=64.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+ +|||..+.|+.|.|.+
T Consensus 53 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~ 131 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ 131 (175)
T ss_dssp TTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECS
T ss_pred cccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecC
Confidence 6899999999999999999 5999999999999973
Q ss_pred ---ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 ---HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ---~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++|||||+|.+.++|++||..|||..+.|++|.+
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 5799999999999999999999999999999864
No 4
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=8.1e-18 Score=106.75 Aligned_cols=70 Identities=29% Similarity=0.460 Sum_probs=65.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+ .+||..+.|+.+.|.+
T Consensus 50 ~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 128 (172)
T 2g4b_A 50 DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK 128 (172)
T ss_dssp TTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEe
Confidence 5899999999999999999 8999999999998863
Q ss_pred ------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 ------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++|+..|||..++|++|.+.
T Consensus 129 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 129 DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 47999999999999999999999999999999754
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=6.8e-18 Score=110.48 Aligned_cols=83 Identities=25% Similarity=0.376 Sum_probs=69.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.|.|..
T Consensus 69 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~ 148 (216)
T 2qfj_A 69 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA 148 (216)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT
T ss_pred cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc
Confidence 689999999999999999999999999999888841
Q ss_pred -----------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceeccCCCC
Q psy4383 38 -----------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYVSPTP 87 (89)
Q Consensus 38 -----------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~~~~~ 87 (89)
++|||||+|.+.++|++|+..|||..++|++|. +.+......-.++|
T Consensus 149 ~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~---V~~a~~~~~~~~~p 212 (216)
T 2qfj_A 149 FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR---VGKAVTPPMPLLTP 212 (216)
T ss_dssp SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE---EEECSSCSSTTSCC
T ss_pred cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE---EEEecCCCCCCCCC
Confidence 489999999999999999999999999999996 44444444333433
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=1.6e-17 Score=104.85 Aligned_cols=70 Identities=29% Similarity=0.434 Sum_probs=64.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.|.|.+
T Consensus 44 ~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 123 (168)
T 1b7f_A 44 SYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILR 123 (168)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEE
T ss_pred cceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEE
Confidence 579999999999999999999999999999998863
Q ss_pred ------ccCeEEEEeCCHHHHHHHHHhcCCceecC--eEEEE
Q psy4383 38 ------HKGYAFIQFSNPHDARSACLGEDGRTVLG--QTLVS 71 (89)
Q Consensus 38 ------~rG~afV~F~~~~~a~~Ai~~l~g~~l~g--r~i~~ 71 (89)
++|||||+|.+.++|.+|+..|||..+.| ++|.+
T Consensus 124 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 124 DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 46999999999999999999999999988 88864
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=2.7e-17 Score=103.41 Aligned_cols=68 Identities=29% Similarity=0.505 Sum_probs=63.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.+.|.+
T Consensus 43 ~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 122 (167)
T 1fxl_A 43 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 122 (167)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred ceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEe
Confidence 469999999999999999999999999999998862
Q ss_pred ------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEE
Q psy4383 38 ------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69 (89)
Q Consensus 38 ------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i 69 (89)
++|||||+|.+.++|++|+..|||..+.|+.+
T Consensus 123 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 160 (167)
T 1fxl_A 123 DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE 160 (167)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred cCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCcc
Confidence 47999999999999999999999999999763
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=4.8e-17 Score=105.18 Aligned_cols=71 Identities=28% Similarity=0.466 Sum_probs=65.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+ .|||..+.|+.|.|.+
T Consensus 50 ~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 128 (198)
T 2yh0_A 50 DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLND 128 (198)
T ss_dssp TTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCH
T ss_pred CCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCH
Confidence 5899999999999999999 7999999999988862
Q ss_pred --------------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 --------------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 --------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.++++|++|+..|||..++|++|.+..
T Consensus 129 ~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 129 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp HHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 489999999999999999999999999999996543
No 9
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=4e-16 Score=106.36 Aligned_cols=72 Identities=25% Similarity=0.318 Sum_probs=66.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|..|+..|+|..+.|+.|.|.+
T Consensus 136 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v 215 (284)
T 3smz_A 136 SKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFC 215 (284)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEE
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEE
Confidence 579999999999999999999999999999998862
Q ss_pred ---------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 ---------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ---------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|.+|+..|||..+.|++|.+..
T Consensus 216 ~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 216 QLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp EEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred EEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 489999999999999999999999999999996543
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=5.3e-16 Score=105.74 Aligned_cols=73 Identities=23% Similarity=0.263 Sum_probs=67.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.+.|.+
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 135 (284)
T 3smz_A 56 YKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ 135 (284)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCc
Confidence 689999999999999999999999999999998863
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++|+..|||..+.|++|.+...
T Consensus 136 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 136 SKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 5789999999999999999999999999999975443
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=1.2e-15 Score=98.44 Aligned_cols=71 Identities=18% Similarity=0.367 Sum_probs=63.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+.. ++..+.|+.|.|.+
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 54 SRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp EEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred ccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 589999999999999999985 89999999888752
Q ss_pred ------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 ------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||.. +|..++|+.|.+...
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 589999999999999999986 899999999976544
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=7e-16 Score=97.69 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=59.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceec---CeEeEEEc-----------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVL---GQTLGISM----------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~---g~~i~v~~----------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..|+|..+. ++++.+..
T Consensus 46 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v 125 (175)
T 3nmr_A 46 SKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 125 (175)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred cceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEE
Confidence 5799999999999999999999997765 34444431
Q ss_pred ---------ccCeEEEEeCCHHHHHHHHHhcCCceecC---eEEEEE
Q psy4383 38 ---------HKGYAFIQFSNPHDARSACLGEDGRTVLG---QTLVSY 72 (89)
Q Consensus 38 ---------~rG~afV~F~~~~~a~~Ai~~l~g~~l~g---r~i~~~ 72 (89)
++|||||+|.++++|++|+..|||..+.+ ++|.+.
T Consensus 126 ~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 126 RILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred EEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 58999999999999999999999998774 888643
No 13
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=9.4e-16 Score=96.75 Aligned_cols=69 Identities=12% Similarity=0.367 Sum_probs=59.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+.. +..+.|+.+.+.+
T Consensus 44 ~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~ 121 (167)
T 2cjk_A 44 SRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLML 121 (167)
T ss_dssp CCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCC
T ss_pred ccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEE
Confidence 679999999999999999985 4567777665541
Q ss_pred ------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 ------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|++|++ +||..++|++|.+..
T Consensus 122 ~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 122 DKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKR 162 (167)
T ss_dssp SSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEE
T ss_pred cCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEee
Confidence 57999999999999999998 999999999997543
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=5.2e-15 Score=100.73 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=31.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceec-CeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVL-GQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~-gr~i~~ 71 (89)
.+|||||+|.+.++|++||..|||..+. |++|.+
T Consensus 243 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 243 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 3599999999999999999999999999 999964
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=6.1e-15 Score=100.79 Aligned_cols=71 Identities=24% Similarity=0.292 Sum_probs=64.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc-------------------------------------------c
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------H 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------~ 38 (89)
++|||||+|.+.++|+.|+. ++|..+.|+.|.|.+ +
T Consensus 80 ~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~ 158 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTS 158 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------
T ss_pred CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCc
Confidence 47999999999999999995 999999999988852 5
Q ss_pred cCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 39 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 39 rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
+|||||+|.+.++|++|+..|||..+.|++|.+..
T Consensus 159 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 159 RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 89999999999999999999999999999997643
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=3.1e-15 Score=99.25 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=59.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE---------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS--------------------------------------------- 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~--------------------------------------------- 36 (89)
++|||||+|.+.++|+.|+..|||..+.|++|.|.
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 120 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ 120 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccC
Confidence 47999999999999999999999999998876543
Q ss_pred -----c-------------------------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCe
Q psy4383 37 -----M-------------------------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQ 67 (89)
Q Consensus 37 -----~-------------------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr 67 (89)
+ ++|||||+|.+.++|.+||..|||..|.|+
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 0 258999999999999999999999999987
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=6.3e-15 Score=100.73 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=63.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc--------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------- 37 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.|.|.+
T Consensus 158 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~ 237 (292)
T 2ghp_A 158 SRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS 237 (292)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC
Confidence 589999999999999999999999999999888751
Q ss_pred ---------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 ---------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ---------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.++++|.+|| .|||..+.|++|.+-
T Consensus 238 v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 238 IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 2689999999999999999 999999999999643
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.59 E-value=3.1e-15 Score=101.64 Aligned_cols=73 Identities=25% Similarity=0.378 Sum_probs=64.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc-------------------------------------------c
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM-------------------------------------------H 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~-------------------------------------------~ 38 (89)
++|||||+|.+.++|+.|+..+||..+.|+.|.|.+ +
T Consensus 57 ~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~ 136 (261)
T 3sde_A 57 DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRA 136 (261)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCE
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCc
Confidence 589999999999999999999999999999998863 5
Q ss_pred cCeEEEEeCCHHHHHHHHHhc-CCceec---CeEEEEEee
Q psy4383 39 KGYAFIQFSNPHDARSACLGE-DGRTVL---GQTLVSYKL 74 (89)
Q Consensus 39 rG~afV~F~~~~~a~~Ai~~l-~g~~l~---gr~i~~~~~ 74 (89)
+|||||+|.+.++|.+||..| +|..+. +++|.+...
T Consensus 137 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 137 TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence 899999999999999999999 555555 888876555
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=5.1e-15 Score=98.84 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=62.8
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc---------------------------------------------
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM--------------------------------------------- 37 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~--------------------------------------------- 37 (89)
+|||||+|.+.++|+.|+..|+|..+.|+.|.|.+
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 151 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCC
Confidence 69999999999999999999999999888776630
Q ss_pred ------------------------------------ccCeEEEEeCCHHHHHHHHHhcCCceec-CeEEEE
Q psy4383 38 ------------------------------------HKGYAFIQFSNPHDARSACLGEDGRTVL-GQTLVS 71 (89)
Q Consensus 38 ------------------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~-gr~i~~ 71 (89)
++|||||+|.+.++|++||..|||..+. |++|.+
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 6799999999999999999999999999 999853
No 20
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.57 E-value=8.1e-15 Score=92.79 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=57.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCce------------------------------ecCeEeEEE---------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRT------------------------------VLGQTLGIS--------------- 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~------------------------------l~g~~i~v~--------------- 36 (89)
++|||||+|.+.++|+.|+..+++.. .....|.|.
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F 91 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVF 91 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 68999999999999999997765321 011233332
Q ss_pred ------------------cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 37 ------------------MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 37 ------------------~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 92 ~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 92 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 16899999999999999999999999999999965443
No 21
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=5.4e-15 Score=96.02 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=63.0
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc---------------------------------------------
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM--------------------------------------------- 37 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~--------------------------------------------- 37 (89)
+|||||+|.+.++|+.|+..|+|..+.|+.|.|.+
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 120 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 120 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCc
Confidence 69999999999999999999999999998777730
Q ss_pred ------------------------------------ccCeEEEEeCCHHHHHHHHHhcCCceec-CeEEEE
Q psy4383 38 ------------------------------------HKGYAFIQFSNPHDARSACLGEDGRTVL-GQTLVS 71 (89)
Q Consensus 38 ------------------------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~-gr~i~~ 71 (89)
++|||||+|.+.++|++|+..|||..++ |++|.+
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 5799999999999999999999999999 998853
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.50 E-value=1.3e-14 Score=91.40 Aligned_cols=70 Identities=26% Similarity=0.317 Sum_probs=62.1
Q ss_pred cceeEEEEecCHHHHHHHHhhc-CCceecCeEeEEEc-------------------------------------------
Q psy4383 2 HKGYAFIQFSNPHDARSACLGE-DGRTVLGQTLGISM------------------------------------------- 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l-~g~~l~g~~i~v~~------------------------------------------- 37 (89)
.+|+++|+|.+.++|+.|+..| ||..+.| .+.+++
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 4799999999999999999999 8888877 666641
Q ss_pred ------------------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 ------------------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ------------------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++||..|||..+.|++|.+.
T Consensus 91 ~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp HHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred HHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 48999999999999999999999999999999643
No 23
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.31 E-value=3.3e-12 Score=75.38 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=48.3
Q ss_pred cCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 11 SNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 11 ~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
...++....++.-.|.+..- .+..+||||||+|.++++|++||+.|||.++.||+|++..+.
T Consensus 18 ~~te~~L~~lF~q~G~V~~~---~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 18 QIDGPTLRTLCMQHGPLVSF---HPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TCCCHHHHHHHHHHSCEEEE---EEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cCCHHHHHHHHHhhCCEEEE---EEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 34445555555556665553 334699999999999999999999999999999999876653
No 24
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=7.1e-12 Score=76.73 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=40.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceeccCCCCC
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYVSPTPT 88 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~~~~~~ 88 (89)
++||+||+|.+.++|++|+.+|||++++||+|. +.|+....|-+.+|.
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~---v~~~~~~~y~~~fp~ 101 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT---AAYVPLPTYHNLFPD 101 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECE---EEEECHHHHHHHCGG
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE---EEEEcHHHHHHhCcc
Confidence 479999999999999999999999999999996 556666666555553
No 25
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.8e-10 Score=67.60 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=40.1
Q ss_pred CeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
|....+.+.+|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 42 g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 42 GAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp TCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred cceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 666777889999999999999999999999999999999965444
No 26
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.14 E-value=4.5e-11 Score=71.92 Aligned_cols=42 Identities=26% Similarity=0.471 Sum_probs=35.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceec
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRY 82 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~ 82 (89)
++||+||+|.+.++|++|+.+|||+.++||+|. +.|++...|
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~---v~~~~~~~f 99 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVV---TKYCDPDSY 99 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECE---EEEECHHHH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEE---EEEeCHHHH
Confidence 579999999999999999999999999999996 444444433
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.11 E-value=9.5e-11 Score=69.11 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=35.3
Q ss_pred CcceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 1 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 1 ~~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++||||||+|.+.++|+.|++.|||..+.|++|+|.+.
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 37999999999999999999999999999999988654
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.10 E-value=1.5e-10 Score=69.97 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=47.5
Q ss_pred CHHHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 12 NPHDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 12 ~~~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
..++....++.-.|.+..-+.+.- ..++|||||+|++.++|++||+.|||..+.|++|.+....
T Consensus 18 ~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 18 VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 344555566656666554443332 2378999999999999999999999999999999765543
No 29
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.10 E-value=1.3e-10 Score=68.92 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
.++....++.-.|.+..-+.+.- ..++|||||+|.++++|++||+.|||..+.|++|.+.
T Consensus 32 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 32 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34445555556666554444332 1378999999999999999999999999999999753
No 30
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.10 E-value=1.9e-10 Score=69.17 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=41.1
Q ss_pred HhhcCCceecCeEeEEE----cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 20 CLGEDGRTVLGQTLGIS----MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 20 i~~l~g~~l~g~~i~v~----~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
...-.|.+..-+.+... .++|||||+|.++++|++|+.+|||++++||+|.+..
T Consensus 33 ~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~ 90 (105)
T 2pe8_A 33 ECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACF 90 (105)
T ss_dssp HGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEE
Confidence 33455655554443321 3589999999999999999999999999999996443
No 31
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=2.7e-10 Score=65.83 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=38.5
Q ss_pred CeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
|....+.+.+|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 33 G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 33 GKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 345556667999999999999999999999999999999965444
No 32
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.07 E-value=3.3e-10 Score=66.75 Aligned_cols=44 Identities=30% Similarity=0.564 Sum_probs=38.9
Q ss_pred cCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 29 LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
.|....+.+++|||||+|.+.++|++||..|||..+.|++|.+.
T Consensus 47 ~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 47 YGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp GSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred cCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45566677789999999999999999999999999999999643
No 33
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.07 E-value=8.5e-10 Score=67.74 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=41.6
Q ss_pred hhcCCceecCeEeEEEc-------ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 21 LGEDGRTVLGQTLGISM-------HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 21 ~~l~g~~l~g~~i~v~~-------~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
..-.|.+..-+.+.... ++||+||+|.+.++|++|+.+|||++++||+|.+..
T Consensus 46 f~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~ 105 (118)
T 3ue2_A 46 CGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 105 (118)
T ss_dssp HTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEE
Confidence 34566666555554432 469999999999999999999999999999996443
No 34
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.07 E-value=8.6e-10 Score=62.97 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=43.1
Q ss_pred HHHHHHHhhcCCceecCeEeEEE----cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGIS----MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~----~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++....++.-.|....-+.+... .++|||||+|.+.++|++|+..|||..+.|++|.+...
T Consensus 18 ~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 18 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp HHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 34444445455544332222211 17999999999999999999999999999999975433
No 35
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=1.8e-10 Score=69.25 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=33.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
++|||||+|.++++|++||..|||..+.|++|.+....
T Consensus 62 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 62 PSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred CCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 45899999999999999999999999999999765443
No 36
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.06 E-value=2.5e-10 Score=68.48 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=32.2
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++|||||+|.++++|++|+.+|||+.++||+|.+
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 5899999999999999999999999999999964
No 37
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.06 E-value=9.3e-11 Score=73.06 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=34.6
Q ss_pred eEEEEecCHHHHHHHHhhcCCceecCe----------------EeEEE--------------------------------
Q psy4383 5 YAFIQFSNPHDARSACLGEDGRTVLGQ----------------TLGIS-------------------------------- 36 (89)
Q Consensus 5 f~fV~f~~~~~a~~Ai~~l~g~~l~g~----------------~i~v~-------------------------------- 36 (89)
+.|++|++...+..|+..|+|....|+ .|.|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 85 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT 85 (135)
T ss_dssp -----------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC
Confidence 457788888888888888887665554 23332
Q ss_pred -cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 37 -MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 37 -~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
.++|||||+|.+.++|++||..|||..+.|++|.+..
T Consensus 86 g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 86 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp SSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 1589999999999999999999999999999996443
No 38
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=5.7e-10 Score=64.68 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCC-ceecCeEEEEEee
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDG-RTVLGQTLVSYKL 74 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g-~~l~gr~i~~~~~ 74 (89)
.++....++.-.|..+....+ .++|||||+|.+.++|++||..||| ..+.|++|.+...
T Consensus 21 t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 21 TADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 344445555566664444333 4799999999999999999999999 9999999975544
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.04 E-value=3.3e-10 Score=68.55 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=46.4
Q ss_pred CHHHHHHHHhhcCCceecCeEeEEE-cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 12 NPHDARSACLGEDGRTVLGQTLGIS-MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 12 ~~~~a~~Ai~~l~g~~l~g~~i~v~-~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
..++....++.-.|.+..-+.+.-. -+||||||+|.+.++|++||+.|||..+.|++|.+...
T Consensus 17 ~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 17 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3445555566556665544433221 25899999999999999999999999999999976544
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=7.5e-10 Score=64.67 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCCceecCeEeEEE------cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGIS------MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~------~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++....++.-.|.+..-+.+... .++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 18 t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 18 TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 344455555566765554444322 46799999999999999999999999999999965443
No 41
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.04 E-value=8.2e-11 Score=68.19 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=44.0
Q ss_pred CHHHHHHHHhhcCC--ceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 12 NPHDARSACLGEDG--RTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 12 ~~~~a~~Ai~~l~g--~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
..++....++.-.| ....-+.+.-. .++|||||+|.+.++|++||+.|||..+.|++|.+.
T Consensus 13 ~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 13 TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 34455556666667 44443333321 378999999999999999999999999999999643
No 42
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=3.5e-10 Score=68.14 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=41.9
Q ss_pred HHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 16 ARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 16 a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
....++.-.|.+..- .|....++|||||+|.+.++|++||..|||..++||+|.+...
T Consensus 42 ~l~~~f~~~G~v~~v-~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a 99 (112)
T 2dit_A 42 DLRVECSKFGQIRKL-LLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 99 (112)
T ss_dssp HHHHHGGGTSCCSEE-EEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred HHHHHHHccCCEeEE-EEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 334444455544333 2211136899999999999999999999999999999975443
No 43
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=8.9e-10 Score=64.52 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=33.2
Q ss_pred cCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 39 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 39 rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+|||||+|.++++|++||..|||..+.|++|.+...
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 999999999999999999999999999999975443
No 44
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=3.2e-09 Score=62.06 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=47.5
Q ss_pred HHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceeccCCCC
Q psy4383 14 HDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYVSPTP 87 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~~~~~ 87 (89)
++....++.-.|.+.. +.+..++|||||+|.+.++|++||..|||..+.|++|. +.+....+-..+.|
T Consensus 27 ~~~l~~~F~~~G~i~~---v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~---v~~a~~~~~~~~~~ 94 (97)
T 1x5p_A 27 PTLLRGAFSPFGNIID---LSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLK---VNIARKQPMLDSGP 94 (97)
T ss_dssp HHHHHHHHTTTSCEEE---EEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE---EECCSSCCCCCSSC
T ss_pred HHHHHHHHhhCCCEEE---EEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE---EEECCCCCCCCCCC
Confidence 4444555555554432 33346899999999999999999999999999999996 44444444334433
No 45
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.03 E-value=4.9e-10 Score=66.22 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=44.3
Q ss_pred HHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecC-eEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLG-QTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~g-r~i~~~~~ 74 (89)
++....++.-.|.+..-+.+.-. .++|||||+|.+.++|++||..|||..+.| ++|.+..+
T Consensus 26 ~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 26 KKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp HHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred HHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 34444555556654433333221 278999999999999999999999999999 99976544
No 46
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.03 E-value=8.8e-10 Score=63.51 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=35.1
Q ss_pred EEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 34 GISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 34 ~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
.+..++|||||+|.++++|++||..|||..+.|++|.+.
T Consensus 35 ~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 35 YVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQ 73 (88)
T ss_dssp EEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred EEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 334789999999999999999999999999999999643
No 47
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.2e-10 Score=67.09 Aligned_cols=45 Identities=29% Similarity=0.515 Sum_probs=39.1
Q ss_pred CeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
|....+.+++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 36 G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 36 GHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 445566678999999999999999999999999999999975544
No 48
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1e-09 Score=63.52 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=38.6
Q ss_pred CeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
|....+.+.++||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 35 G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 35 GPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp SCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 445566778999999999999999999999999999999964443
No 49
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=6.6e-10 Score=68.10 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=50.1
Q ss_pred cCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCcee-----cCeEEEEEeeeeecceeccCC
Q psy4383 11 SNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTV-----LGQTLVSYKLQYYNGCRYVSP 85 (89)
Q Consensus 11 ~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l-----~gr~i~~~~~~~~~~~~~~~~ 85 (89)
...++....++.-.|.+.. +.+...||||||+|.++++|++|+.+|||+.+ .|++|. +.|-..-.|..|
T Consensus 38 ~~te~~L~~~F~~fG~v~~---v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~---v~~a~~~p~~~~ 111 (114)
T 2cq2_A 38 GVSRNQLLPVLEKCGLVDA---LLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY---LNFVEKVQWSGP 111 (114)
T ss_dssp TCCHHHHHHHHHHHSCEEE---EECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE---EEEESCCCCSSC
T ss_pred CCCHHHHHHHHHhcCCeEE---EEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE---EEecccCcccCC
Confidence 3455566666666665322 23334789999999999999999999999998 567764 566666666655
Q ss_pred C
Q psy4383 86 T 86 (89)
Q Consensus 86 ~ 86 (89)
.
T Consensus 112 ~ 112 (114)
T 2cq2_A 112 S 112 (114)
T ss_dssp C
T ss_pred C
Confidence 3
No 50
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=8.6e-10 Score=64.82 Aligned_cols=37 Identities=32% Similarity=0.455 Sum_probs=34.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 6899999999999999999999999999999975544
No 51
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=5.5e-10 Score=66.57 Aligned_cols=60 Identities=22% Similarity=0.198 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 14 HDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++....++.-.|.+..-+...-..++|||||+|.+.++|++||+.|||..+.|++|.+..
T Consensus 36 ~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 36 TKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp HHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred HHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344444444455443322222123689999999999999999999999999999996443
No 52
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.00 E-value=5.6e-10 Score=67.84 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=33.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|++||..|||..+.|++|.+..
T Consensus 66 ~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 66 FDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 799999999999999999999999999999997543
No 53
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.9e-09 Score=63.50 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=34.2
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
++|||||+|.+.++|++||..|||..+.|++|.+....
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 54 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 48999999999999999999999999999999755443
No 54
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.00 E-value=1.2e-09 Score=64.52 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=40.2
Q ss_pred cCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 29 LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.|.+..|.+.+|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 35 ~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 35 FGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp HSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred cCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3556667778999999999999999999999999999999976554
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.00 E-value=1.5e-09 Score=61.65 Aligned_cols=35 Identities=29% Similarity=0.541 Sum_probs=32.9
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++|++.|||..+.|++|.+.
T Consensus 48 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 48 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 68999999999999999999999999999999654
No 56
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.3e-09 Score=62.84 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=39.9
Q ss_pred cCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 29 LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.|....+.+.+|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 33 ~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 33 RGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp HSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4556677778999999999999999999999999999999965443
No 57
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.99 E-value=5.9e-10 Score=66.89 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=48.1
Q ss_pred ecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCce--ecCeEEEEEeeeeeccee
Q psy4383 10 FSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRT--VLGQTLVSYKLQYYNGCR 81 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~--l~gr~i~~~~~~~~~~~~ 81 (89)
+...++....++.-.|.+..-+ +-.+||||||+|++.++|++|+..|||.. +.||+|. ++|++..+
T Consensus 31 ~~~te~~L~~lF~~fG~V~~v~---i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~---V~~S~~k~ 98 (100)
T 3r27_A 31 DGVVEADLVEALQEFGPISYVV---VMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF---VNYSTSQK 98 (100)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEE---EETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE---EEECSCSC
T ss_pred CCCCHHHHHHHHhccCCEEEEE---EEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE---EEeccccc
Confidence 3344555566665566654332 23479999999999999999999999986 7899994 67766543
No 58
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=9e-10 Score=64.73 Aligned_cols=38 Identities=26% Similarity=0.483 Sum_probs=34.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
++|||||+|.+.++|++||..|||..+.|++|.+....
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 53 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 68999999999999999999999999999999755443
No 59
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.98 E-value=1.4e-09 Score=63.53 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=45.2
Q ss_pred HHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 14 HDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++....++.-.|.+...+.+... .++|||||+|.++++|++||+.|||..+.|++|.+..
T Consensus 29 ~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 29 IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp HHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred HHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44445555556665555554442 2689999999999999999999999999999997543
No 60
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.5e-09 Score=62.97 Aligned_cols=39 Identities=31% Similarity=0.419 Sum_probs=34.9
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQY 76 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~ 76 (89)
++|||||+|.+.++|++||..|||..+.|++|.+....-
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 46 SKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 689999999999999999999999999999997655533
No 61
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.98 E-value=1.3e-09 Score=65.69 Aligned_cols=67 Identities=13% Similarity=0.010 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceeccCC
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYVSP 85 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~~~ 85 (89)
.++....++.-.|.+.. +.+..++|||||+|.+.++|++||..|||..+.|++|. +.+.....+.++
T Consensus 23 te~~L~~~F~~~G~i~~---v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~---V~~a~~~~~~~~ 89 (111)
T 1whx_A 23 LAAEIQETFSRFGSLGR---VLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY---LEWAPIGVFGAA 89 (111)
T ss_dssp CHHHHHHHHHTTSCEEE---EECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE---EEEEETTTTCCC
T ss_pred CHHHHHHHHHhcCCEEE---EEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE---EEECCCCccCCC
Confidence 34445555555555422 22224899999999999999999999999999999996 444444444443
No 62
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.97 E-value=4.1e-10 Score=63.92 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCceecCeEeEE-EcccCeEEEEeCCHHHHHHHHHhcCCceecCe-EEEE
Q psy4383 15 DARSACLGEDGRTVLGQTLGI-SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQ-TLVS 71 (89)
Q Consensus 15 ~a~~Ai~~l~g~~l~g~~i~v-~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr-~i~~ 71 (89)
+....++.-.|.+..-+.+.- ..++|||||+|.+.++|++||..|||..+.|+ +|.+
T Consensus 22 ~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 22 NVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 444455555555433222100 02589999999999999999999999999999 8853
No 63
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.96 E-value=8.1e-10 Score=65.45 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|++|.|++.+
T Consensus 60 ~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 60 SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 57999999999999999999999999999999998654
No 64
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.96 E-value=9.5e-10 Score=63.80 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 14 HDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++....++.-.|.+..-+.+... .++|||||+|.++++|++||+.|||..+.|++|.+.
T Consensus 29 ~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 29 IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp HHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred HHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 34444455555655544444432 368999999999999999999999999999999654
No 65
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.96 E-value=2.8e-09 Score=60.27 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++....++.-.|.....+.+.- ..++|||||+|.+.++|++|+..|||..+.|++|.+.
T Consensus 15 ~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 15 DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred HHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3334444444554433322211 1258999999999999999999999999999999654
No 66
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.1e-09 Score=64.35 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=33.7
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..|.|++|.+...
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 53 SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 5799999999999999999999999999999975544
No 67
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.96 E-value=7.1e-10 Score=66.26 Aligned_cols=45 Identities=53% Similarity=0.834 Sum_probs=38.2
Q ss_pred CeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
|....|.+++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 53 G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 53 GRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp SCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 344455569999999999999999999999999999999965443
No 68
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=4.9e-10 Score=69.52 Aligned_cols=54 Identities=20% Similarity=0.144 Sum_probs=40.0
Q ss_pred HHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 19 ACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 19 Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
.++.-.|.++.-....-..++|||||+|.+.++|++||..|||..+.|++|.+.
T Consensus 52 ~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 52 ALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp HHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred HHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 345555655432111112478999999999999999999999999999999644
No 69
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.95 E-value=2.7e-09 Score=62.35 Aligned_cols=38 Identities=32% Similarity=0.464 Sum_probs=34.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
++|||||+|.+.++|++||..|||..+.|++|.+....
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 49 PKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred cCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 67999999999999999999999999999999765543
No 70
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.95 E-value=1.5e-09 Score=63.65 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 15 DARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 15 ~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
+....++.-.|.+ ..+.+..++|||||+|.+.++|++||..|||..+.|++|.+..
T Consensus 30 ~~l~~~F~~~G~i---~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 30 EEMRKLFEKYGKA---GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp HHHHHHTSTTCCC---SEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred HHHHHHHhhcCCe---EEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 3344444444543 2344445789999999999999999999999999999996433
No 71
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=3.6e-09 Score=63.10 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=43.6
Q ss_pred CHHHHHHHHhhcCCceecCeEeEEEccc-CeEEEEeCCHHHHHHHHHhcCCceecC-----eEEEEEeee
Q psy4383 12 NPHDARSACLGEDGRTVLGQTLGISMHK-GYAFIQFSNPHDARSACLGEDGRTVLG-----QTLVSYKLQ 75 (89)
Q Consensus 12 ~~~~a~~Ai~~l~g~~l~g~~i~v~~~r-G~afV~F~~~~~a~~Ai~~l~g~~l~g-----r~i~~~~~~ 75 (89)
..++....++.-.|. +..|.+.+ |||||+|.+.++|++||+.|||..+.| ++|.+....
T Consensus 27 ~t~~~l~~~F~~~G~-----i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 27 GSWQDLKDHMREAGD-----VCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCHHHHHHHHGGGSC-----EEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCHHHHHHHHHhcCC-----EeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 334444455544443 44444444 999999999999999999999999999 999766553
No 72
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=6.7e-10 Score=66.24 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=34.8
Q ss_pred eEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 31 QTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 31 ~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
+++.| ..|+|||+|.+.++|++|+++|||..+.||+|++.
T Consensus 40 ~Vl~V--tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 40 KVLSI--TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp CEEEC--CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eeEEE--ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 45555 45999999999999999999999999999999643
No 73
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.94 E-value=3.8e-09 Score=62.89 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=33.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 67 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 67 SKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5799999999999999999999999999999975443
No 74
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.94 E-value=1.8e-09 Score=68.89 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=46.4
Q ss_pred CHHHHHHHHhhcCC--ceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 12 NPHDARSACLGEDG--RTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 12 ~~~~a~~Ai~~l~g--~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
..++....++.-.| .+...+.+.. ..++|||||+|.+.++|++||..|||..|.|++|.+...
T Consensus 67 ~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 67 TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 33444555555566 4444433322 136899999999999999999999999999999976654
No 75
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.94 E-value=1.3e-09 Score=65.35 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=34.9
Q ss_pred EeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 32 TLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 32 ~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
...+.+.+|||||+|.+.++|++|+..|||..+.|++|.+
T Consensus 58 i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 58 MKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp CCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred EEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3444445999999999999999999999999999999964
No 76
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.94 E-value=3.1e-09 Score=60.55 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=33.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|++|+..|||..+.|++|.+..
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 47 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 579999999999999999999999999999996543
No 77
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.93 E-value=1.6e-09 Score=65.04 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceeccCCCC
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYVSPTP 87 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~~~~~ 87 (89)
++....++.-.|.+..-+.+.- ..++|||||+|.+.++|++||..|||..+.|++|.+ .+....+--+|.|
T Consensus 39 ~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V---~~a~~~~~~~~~~ 112 (115)
T 2cpz_A 39 DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV---QLKRSKNDSKSGP 112 (115)
T ss_dssp HHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE---ECCCCSCCCCCCC
T ss_pred HHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE---EEcCCCCcCCCCC
Confidence 3444444445554433332221 136799999999999999999999999999999964 4444333334443
No 78
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=4.4e-09 Score=61.92 Aligned_cols=36 Identities=33% Similarity=0.323 Sum_probs=33.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|++||..|||..+.|++|.+..
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 56 SKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred eeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 578999999999999999999999999999996443
No 79
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3.6e-09 Score=61.18 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=32.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.++++|++||+.|||..+.|++|.+.
T Consensus 57 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 57 SKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred cccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 57999999999999999999999999999999754
No 80
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.7e-09 Score=62.56 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=42.1
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++....++.-.|.+..-+.+.- ..++|||||+|.+.++|++||..|||..+.|++|.+
T Consensus 29 ~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 29 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp HHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred HHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3444455555565443332221 136899999999999999999999999999999964
No 81
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=1.4e-09 Score=62.73 Aligned_cols=36 Identities=22% Similarity=0.443 Sum_probs=33.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||. |||..+.|+.|.+...
T Consensus 49 ~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 49 KTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp EEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 58999999999999999999 9999999999976554
No 82
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.92 E-value=9.9e-10 Score=64.93 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=32.5
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCc----eecCeEEEEE
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGR----TVLGQTLVSY 72 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~----~l~gr~i~~~ 72 (89)
.+||||||+|.++++|++||+.|||. .++||+|.+.
T Consensus 51 ~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~ 90 (95)
T 2lkz_A 51 QNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVD 90 (95)
T ss_dssp SCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEE
T ss_pred CCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEE
Confidence 47999999999999999999999997 5999999644
No 83
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.92 E-value=4.2e-09 Score=62.08 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=33.2
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
++|||||+|.+.++|++|| .|||..+.|++|.+....
T Consensus 55 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 55 FKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp EEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred cceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 5899999999999999999 899999999999765443
No 84
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.92 E-value=3.2e-09 Score=61.86 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=32.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++||+.|||..+.|+.|.+.
T Consensus 43 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 77 (96)
T 2x1f_A 43 SKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77 (96)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 58999999999999999999999999999999643
No 85
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1.8e-09 Score=64.69 Aligned_cols=48 Identities=29% Similarity=0.350 Sum_probs=37.9
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceeccCCCC
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRYVSPTP 87 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~~~~~~ 87 (89)
.++|||||+|.+.++|++||..|||..+.|++|.+ .+....+=-+|+|
T Consensus 65 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v---~~a~~~~~~~~~~ 112 (115)
T 2cpx_A 65 RMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI---EFGKNKKQRSSGP 112 (115)
T ss_dssp SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE---EECCCCSCCCCCC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE---EEccCCCCCCCCC
Confidence 46899999999999999999999999999999964 4443333334444
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=9e-10 Score=66.58 Aligned_cols=58 Identities=14% Similarity=-0.039 Sum_probs=42.8
Q ss_pred HHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcC--CceecCeEEEEEe
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGED--GRTVLGQTLVSYK 73 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~--g~~l~gr~i~~~~ 73 (89)
.++....++.-.|.+..-+. -..||||||+|++.++|++||..|+ +..+.|++|.+..
T Consensus 29 te~dL~~lF~~fG~V~~v~i---~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 29 TEGEVISLGLPFGKVTNLLM---LKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CHHHHHHHHHHHCCEEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CHHHHHHHHHhcCCEEEEEE---EcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 44555566656666544332 2468999999999999999999886 4799999996433
No 87
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.90 E-value=3.3e-09 Score=60.46 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=33.1
Q ss_pred EEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 35 ISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 35 v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
+..++|||||+|.+.++|++|+ .|||..+.|++|.+.
T Consensus 49 ~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 49 INQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp ECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred ecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEe
Confidence 3346999999999999999999 999999999999753
No 88
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.5e-09 Score=62.09 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCCceecC-eEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLG-QTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g-~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++....++.-.|.+..- +.+.- ..++|||||+|.++++|++||..|||..+.|++|.+...
T Consensus 19 ~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 19 EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp HHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred HHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44445555556665444 33321 136899999999999999999999999999999975443
No 89
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.7e-09 Score=63.81 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=33.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 64 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 64 PKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp BCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred eeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 5899999999999999999999999999999965443
No 90
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.1e-09 Score=63.12 Aligned_cols=38 Identities=26% Similarity=0.558 Sum_probs=34.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
++|||||+|.++++|++||..|||..+.|++|.+....
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 53 SRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 68999999999999999999999999999999765543
No 91
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.90 E-value=2.3e-09 Score=65.14 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=36.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG 40 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.++
T Consensus 66 ~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 66 FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 589999999999999999999999999999999987654
No 92
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.90 E-value=3.5e-09 Score=63.50 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=45.9
Q ss_pred cCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCc--eecCeEEEEEeeeeecce
Q psy4383 11 SNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGR--TVLGQTLVSYKLQYYNGC 80 (89)
Q Consensus 11 ~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~--~l~gr~i~~~~~~~~~~~ 80 (89)
...++....++.-.|.+.. +.+...||||||+|+++++|++|+..|++. .+.|++|. ++|.+..
T Consensus 26 ~~te~~L~~~F~~fG~V~~---v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~---V~~a~~~ 91 (104)
T 1wex_A 26 SVVEADLVEALEKFGTICY---VMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF---FNYSTSK 91 (104)
T ss_dssp SCCHHHHHHHHTTTSCEEE---EEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE---EEECSSS
T ss_pred CCCHHHHHHHHHhCCCEEE---EEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE---EEEccCc
Confidence 3345556666666676544 333347999999999999999999998765 59999996 4444443
No 93
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.89 E-value=1.8e-09 Score=65.13 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=35.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 47 ~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 47 HLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 68999999999999999999999999999999998753
No 94
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=3.6e-09 Score=62.12 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 14 HDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++....++.-.|.+. .+.+..++|||||+|.+.++|++||..|||..+.|++|.+
T Consensus 41 ~~~l~~~f~~~G~i~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 41 EADLIPLFQNFGFIL---DFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp HHHHHHHHHTTSCCS---EEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred HHHHHHHHHhCCCEE---EEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 333444444555433 2333358999999999999999999999999999999964
No 95
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.89 E-value=1.8e-09 Score=63.29 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=33.1
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|++||+.|||..+.|++|.+..
T Consensus 62 ~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 97 (99)
T 2la6_A 62 LKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSF 97 (99)
T ss_dssp EEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEe
Confidence 589999999999999999999999999999997543
No 96
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.4e-09 Score=63.23 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=32.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++|| .|||..+.|++|.+...
T Consensus 56 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 56 LKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp BCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred cCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 5899999999999999999 89999999999975544
No 97
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.89 E-value=1.7e-09 Score=62.92 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=34.0
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 51 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 36899999999999999999999999999999965443
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.89 E-value=1.8e-09 Score=64.77 Aligned_cols=61 Identities=18% Similarity=0.042 Sum_probs=43.9
Q ss_pred cCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCc--eecCeEEEEEee
Q psy4383 11 SNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGR--TVLGQTLVSYKL 74 (89)
Q Consensus 11 ~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~--~l~gr~i~~~~~ 74 (89)
...++....++.-.|.+..-+.+ ..+|||||+|+++++|++||..||+. .+.||+|.+...
T Consensus 27 ~~te~dL~~lF~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 27 KNLRYQLLQLVEPFGVISNHLIL---NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp SSHHHHHHTTTGGGSCEEEEEEC---SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred cCCHHHHHHHHHhcCCEEEEEEE---cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 34455555666555654443322 36799999999999999999999865 599999965444
No 99
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.88 E-value=2.3e-09 Score=63.73 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCceecCeEeEE-EcccCeEEEEeCCHHHHHHHHHhcCCceecCe-EEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI-SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQ-TLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v-~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr-~i~~~~~ 74 (89)
++....++.-.|.+..-+.+.- ..++|||||+|.+.++|++||..|||..+.|+ +|.+..+
T Consensus 35 ~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a 97 (105)
T 2nlw_A 35 KNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLF 97 (105)
T ss_dssp HHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECS
T ss_pred HHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEc
Confidence 3444555555554333222200 02589999999999999999999999999998 9976543
No 100
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.88 E-value=3e-09 Score=64.70 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=32.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++||..|||..+.|++|.+.
T Consensus 75 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 75 SLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred EeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 68999999999999999999999999999999643
No 101
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.88 E-value=2e-09 Score=62.69 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=31.1
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcC-CceecCeEEEE
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGED-GRTVLGQTLVS 71 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~-g~~l~gr~i~~ 71 (89)
.+||||||+|.++++|++||+.|+ +..+.|++|.+
T Consensus 42 ~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 42 QSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 478999999999999999999884 56899999964
No 102
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=7.2e-09 Score=58.85 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=40.1
Q ss_pred HHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhc-CCceecCeEEEEE
Q psy4383 17 RSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGE-DGRTVLGQTLVSY 72 (89)
Q Consensus 17 ~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l-~g~~l~gr~i~~~ 72 (89)
...++.-.|.+.. +.+..++|||||+|.+.++|++|+..| ||..+.|++|.+.
T Consensus 29 l~~~f~~~G~i~~---~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 29 LRNHFYQFGEIRT---ITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp HHHHHHTTSCEEE---EEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred HHHHHHhCCCEeE---EEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 3444444554332 333347899999999999999999999 9999999999653
No 103
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=1.4e-09 Score=64.21 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=33.9
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 56 HQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp BCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 6799999999999999999999999999999976544
No 104
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=1.2e-09 Score=64.32 Aligned_cols=37 Identities=30% Similarity=0.493 Sum_probs=33.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 54 PRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp BCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 6899999999999999999999999999999964433
No 105
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=3.1e-09 Score=64.25 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=33.2
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.++++|++|| .|||..++||.|.+...
T Consensus 55 ~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 55 NNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 6899999999999999999 69999999999987655
No 106
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=3.9e-09 Score=61.70 Aligned_cols=59 Identities=19% Similarity=0.092 Sum_probs=44.4
Q ss_pred HHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
.++....++.-.|.+. - .+....++|||||+|.+.++|++||..|||..+.|++|.+..
T Consensus 32 t~~~l~~~F~~~G~v~-~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 32 RVSDLKRALRELGSVP-L-RLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp CHHHHHHHHHHTTCCC-S-EEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred cHHHHHHHHHhcCCEE-E-EEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3444455555566543 2 233346899999999999999999999999999999996543
No 107
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=3e-09 Score=62.25 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=32.7
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||. |||..+.|++|.+...
T Consensus 51 ~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 51 PRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 68999999999999999999 9999999999965443
No 108
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.86 E-value=6.2e-10 Score=65.43 Aligned_cols=37 Identities=32% Similarity=0.612 Sum_probs=34.1
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++|+..|||..+.|++|.+...
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 6999999999999999999999999999999976554
No 109
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.86 E-value=8.9e-09 Score=64.35 Aligned_cols=60 Identities=22% Similarity=0.312 Sum_probs=47.5
Q ss_pred ecCHHHHHHHHhhcCCceecCeEeEEEcccCe-EEEEeCCHHHHHHHHHhcCCceecC--eEEEE
Q psy4383 10 FSNPHDARSACLGEDGRTVLGQTLGISMHKGY-AFIQFSNPHDARSACLGEDGRTVLG--QTLVS 71 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~-afV~F~~~~~a~~Ai~~l~g~~l~g--r~i~~ 71 (89)
|...++....++.-.|.+..-+.+. ..+|| |||+|.+.++|++|+++|||..|.| +.|++
T Consensus 38 ~~vte~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 38 YPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp SCCCHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CCCCHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 4556677778887788766554432 35788 9999999999999999999999998 77754
No 110
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.86 E-value=6e-09 Score=61.62 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=32.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++||..|||..+.|++|.+.
T Consensus 69 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 69 SLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 58999999999999999999999999999999754
No 111
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.3e-08 Score=59.62 Aligned_cols=57 Identities=12% Similarity=-0.087 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhc--CCceecCeEEEEE
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGE--DGRTVLGQTLVSY 72 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l--~g~~l~gr~i~~~ 72 (89)
.++....++.-.|.+..- .+...||||||+|++.++|++|+..| ++..+.|++|.+.
T Consensus 28 te~~L~~~F~~fG~v~~v---~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 28 TETEVIALGLPFGKVTNI---LMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CHHHHHHTTTTTSCEEEE---EEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CHHHHHHHHHhcCCEEEE---EEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 344455555556654432 33346899999999999999999977 5788999999643
No 112
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.86 E-value=8.2e-09 Score=59.95 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=32.7
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++|+..|||..+.|++|.+.
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 50 MRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp HTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 58999999999999999999999999999999643
No 113
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.85 E-value=5.9e-09 Score=63.83 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
.++....++.-.|.+..- .+..++|||||+|.+.++|++||..|||..+.|++|.+..
T Consensus 50 te~~L~~~F~~~G~I~~v---~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 50 TPTLLRGAFSPFGNIIDL---SMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CHHHHHHHHSTTCCCSCE---EEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CHHHHHHHHHccCCEEEE---EEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 344455555555654332 3336899999999999999999999999999999996443
No 114
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.85 E-value=3.7e-09 Score=60.01 Aligned_cols=38 Identities=29% Similarity=0.608 Sum_probs=35.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.|
T Consensus 48 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 48 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 58999999999999999999999999999999998643
No 115
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.85 E-value=2.7e-09 Score=63.86 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=34.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+..|||+.+.||+|.|.+
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~ 102 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEE
Confidence 589999999999999999999999999999998865
No 116
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.85 E-value=4e-09 Score=63.22 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++....++.-.|.+..-+.+.- ..++|||||+|.++++|++||..|||..+.|+.|.+...
T Consensus 29 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 29 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3334444444555433322221 125799999999999999999999999999999976554
No 117
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.85 E-value=3.8e-09 Score=64.02 Aligned_cols=37 Identities=32% Similarity=0.670 Sum_probs=33.9
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||+.|||..+.|++|.+...
T Consensus 47 ~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 47 SRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 5699999999999999999999999999999976554
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=1.4e-08 Score=60.50 Aligned_cols=39 Identities=31% Similarity=0.556 Sum_probs=34.3
Q ss_pred EEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 35 ISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 35 v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
+...+|||||+|.+.++|++||..|||..+.|++|.+..
T Consensus 57 i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 57 VFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp EETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred EeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 334589999999999999999999999999999996443
No 119
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.85 E-value=8.7e-10 Score=63.46 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=32.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.+ |++|+..|||..+.|++|.+...
T Consensus 42 ~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 42 PKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp CCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 5899999999999 99999999999999999965443
No 120
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=9.5e-09 Score=60.44 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=33.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 54 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 5799999999999999999999999999999975443
No 121
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.84 E-value=3.2e-09 Score=61.52 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=32.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++||..|||..+.|++|.+.
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 56 PKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp EEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 57999999999999999999999999999999643
No 122
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=7.4e-09 Score=60.94 Aligned_cols=37 Identities=32% Similarity=0.508 Sum_probs=33.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 54 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred cCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 5899999999999999999999999999999965443
No 123
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.84 E-value=3.8e-09 Score=63.80 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
+||||||+|.+.++|+.|+..|+|..+.|+.|.|.+.
T Consensus 44 ~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 44 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5899999999999999999999999999999999864
No 124
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=6.5e-09 Score=62.12 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCceecCeEeEE--EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI--SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v--~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++....++.-.|.+..-+.+.. ..++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 29 ~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 29 WKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp HHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 3334444445554433222211 125799999999999999999999999999999976544
No 125
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=3.7e-09 Score=63.30 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=32.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++|+..|||..+.|++|.+.
T Consensus 68 ~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 68 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 58999999999999999999999999999999754
No 126
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=6.8e-09 Score=61.30 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=33.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|++||..|||..+.|++|.+..
T Consensus 64 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 64 LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred eeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 589999999999999999999999999999996543
No 127
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.83 E-value=5.2e-09 Score=62.74 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=34.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 62 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a 98 (111)
T 2cpi_A 62 PSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLG 98 (111)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESC
T ss_pred CCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 4699999999999999999999999999999999874
No 128
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=9.9e-09 Score=60.08 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=32.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|++||..|||..+.|++|.+..
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 57 PKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred EEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 569999999999999999999999999999996543
No 129
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.83 E-value=6.6e-09 Score=62.52 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=32.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++||+.|||..+.|++|.+.
T Consensus 81 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 81 SKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred cCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 58999999999999999999999999999999653
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=2.3e-09 Score=65.37 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=46.5
Q ss_pred ecCHHHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 10 FSNPHDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+...++....++.-.|.+.....+... .++|||||+|.+.++|++||. |||..|.|+.|.+...
T Consensus 35 ~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 35 FEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp TTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 333444455555556655444444432 368999999999999999999 9999999999976554
No 131
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.83 E-value=1.1e-08 Score=63.43 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=48.6
Q ss_pred ecCHHHHHHHHhhcCCceecCeEeEEEcccCe-EEEEeCCHHHHHHHHHhcCCceecC--eEEEEE
Q psy4383 10 FSNPHDARSACLGEDGRTVLGQTLGISMHKGY-AFIQFSNPHDARSACLGEDGRTVLG--QTLVSY 72 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~-afV~F~~~~~a~~Ai~~l~g~~l~g--r~i~~~ 72 (89)
|...++....++...|.+...+.+. ..|| |||+|.+.++|++|+.+|||..|.| ++|++.
T Consensus 35 ~~vt~~~L~~~Fs~yG~V~~v~i~~---~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 35 YPITVDVLYTVCNPVGKVQRIVIFK---RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SCCCHHHHHHHHTTTSCEEEEEEEE---SSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 5666778888888888876665432 2597 9999999999999999999999988 588654
No 132
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.83 E-value=4.1e-09 Score=64.01 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=33.9
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++|||||+|.++++|++||. |||..++||.|.+...
T Consensus 59 ~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 59 RQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKS 95 (118)
T ss_dssp CEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEE
T ss_pred CCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEEC
Confidence 368999999999999999999 9999999999987655
No 133
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.83 E-value=2.5e-09 Score=63.14 Aligned_cols=38 Identities=29% Similarity=0.495 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCc----eecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGR----TVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~----~l~g~~i~v~~~r 39 (89)
+||||||+|.+.++|+.|+..|||. .+.||+|.|++.+
T Consensus 52 srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 52 NRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp CSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred CceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 6899999999999999999999997 5899999998755
No 134
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.82 E-value=6.3e-09 Score=60.63 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 56 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 57999999999999999999999999999999998754
No 135
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.82 E-value=5.7e-09 Score=62.66 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=34.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||+.+.||+|.|.+.
T Consensus 55 ~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a 91 (105)
T 2pe8_A 55 EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 91 (105)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence 5899999999999999999999999999999988753
No 136
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.82 E-value=9.3e-09 Score=63.18 Aligned_cols=35 Identities=29% Similarity=0.541 Sum_probs=32.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.++++|++||..|||..+.|++|.+.
T Consensus 104 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 104 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 68999999999999999999999999999999753
No 137
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.81 E-value=3e-09 Score=63.75 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=43.0
Q ss_pred HHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 14 HDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++....++.-.|.+..-+.+.-..++|||||+|.+.++|++|+..|||..+.|+.|.+..
T Consensus 22 ~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 22 AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp HHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 333444554555544332222223689999999999999999999999999999996543
No 138
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=6.2e-09 Score=60.16 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.
T Consensus 57 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 57 SKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred cccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5799999999999999999999999999999999864
No 139
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.81 E-value=7e-09 Score=58.57 Aligned_cols=38 Identities=29% Similarity=0.566 Sum_probs=35.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 42 ~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 42 SRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 48999999999999999999999999999999998754
No 140
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.81 E-value=7.3e-09 Score=63.94 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++....++.-.|.+..-+.+... .++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 56 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 56 EVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 33444444445554443333221 25899999999999999999999999999999975544
No 141
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.81 E-value=6e-09 Score=68.81 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=44.9
Q ss_pred HHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++....++...|.+...+.+. -++|||||+|.+.++|++||+.|||..+.|++|.+...
T Consensus 18 ~~~~L~~~F~~~G~v~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 18 NCDRVFNVFCLYGNVEKVKFMK--SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CHHHHHHHHTTTSCEEEEEECT--TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CHHHHHHHHHhcCCeEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 3455566665666554333321 15799999999999999999999999999999976543
No 142
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.81 E-value=6.5e-09 Score=59.21 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=35.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 47 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57999999999999999999999999999999998643
No 143
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.81 E-value=3.2e-09 Score=65.79 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=35.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|++|.|.+.+
T Consensus 71 ~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~ 108 (127)
T 2a3j_A 71 NSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSE 108 (127)
T ss_dssp SCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred cCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence 58999999999999999999999999999999998755
No 144
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.81 E-value=3.9e-09 Score=63.23 Aligned_cols=59 Identities=27% Similarity=0.256 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 14 HDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++....++.-.|.+..-+.+.-. .++|||||+|.+.++|++||+.|||..+.|++|.+.
T Consensus 40 e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 40 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred HHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44444555555654443333221 258999999999999999999999999999999643
No 145
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.80 E-value=6.2e-09 Score=61.46 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=33.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCcee---cCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTV---LGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l---~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..+ .|++|.+...
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 93 (106)
T 2dgp_A 54 HKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 93 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEEC
Confidence 689999999999999999999999998 8999976544
No 146
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.80 E-value=3e-09 Score=62.43 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=33.9
Q ss_pred EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 36 SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 36 ~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
..++|||||+|.+.++|++||+ |||..+.|++|.+...
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 55 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 4589999999999999999999 9999999999975443
No 147
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.80 E-value=1.1e-08 Score=59.63 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceec--CeEEEEEe
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVL--GQTLVSYK 73 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~--gr~i~~~~ 73 (89)
.++....++.-.|.+.. +.+...+|||||+|.+.++|++|+..|||..+. |++|.+..
T Consensus 30 t~~~l~~~F~~~G~v~~---v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 30 SLAALAREFDRFGSIRT---IDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CHHHHHHHHHTTSCEEE---EEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CHHHHHHHHHhcCCeeE---EEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 34444555555554332 223335899999999999999999999999999 99996443
No 148
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.80 E-value=8.6e-09 Score=61.22 Aligned_cols=60 Identities=22% Similarity=0.208 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcC------CceecCeEEEEE
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGED------GRTVLGQTLVSY 72 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~------g~~l~gr~i~~~ 72 (89)
.++....++.-.|.+..-+.+.. ..++|||||+|.+.++|++||..|| |..+.|++|.+.
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~ 96 (111)
T 1x4h_A 28 EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVD 96 (111)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEE
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEE
Confidence 34444555555554332222211 1368999999999999999999999 999999999643
No 149
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.80 E-value=1.6e-08 Score=61.23 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=44.7
Q ss_pred cCHHHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 11 SNPHDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 11 ~~~~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
...++....++.-.|.+..-+.+.- ..++|||||+|.+.++|++|| +|||..+.|+.|.+...
T Consensus 47 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 47 GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3334445555555665544433332 135899999999999999999 79999999999965443
No 150
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.80 E-value=8.9e-09 Score=64.83 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++....++.-.|.+..-+.+.- ..++|||||+|.++++|++||..|||..|.|++|.+...
T Consensus 53 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 53 EEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3444444445555433222221 126799999999999999999999999999999976555
No 151
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=3e-09 Score=63.50 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=45.3
Q ss_pred cCHHHHHHHHhhcCCceecCeEeEE--EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 11 SNPHDARSACLGEDGRTVLGQTLGI--SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 11 ~~~~~a~~Ai~~l~g~~l~g~~i~v--~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
...++....++.-.|.+..-+.+.- ..++|||||+|.++++|++||. +||..++|++|.+...
T Consensus 22 ~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 22 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3445555566656665444332221 2378999999999999999999 9999999999976543
No 152
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=7.1e-09 Score=62.11 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=41.4
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++....++.-.|.+..-+.+.. ..++|||||+|.+.++|++|| .|||..+.|+.|.+..
T Consensus 39 ~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 39 PRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred HHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3444455545554433222211 136899999999999999999 9999999999996543
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.79 E-value=1e-08 Score=61.93 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=40.6
Q ss_pred cCHHHHHHHHhhcCCceecCeEeEEEccc-CeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 11 SNPHDARSACLGEDGRTVLGQTLGISMHK-GYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 11 ~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r-G~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
...++....++.-.| .+..|.+.+ |||||+|.+.++|++||+.|||..|.|++|.
T Consensus 27 ~~t~~~l~~~F~~~G-----~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 27 SGSWQDLKDHMREAG-----DVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp SCCTTHHHHHHGGGS-----CEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCHHHHHHHHHhcC-----CeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 334444455554444 344455444 9999999999999999999999999999843
No 154
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=7.6e-09 Score=60.46 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=34.9
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
+|||||+|.+.++|+.|+..|||..+.|+.|+|++.+
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 7999999999999999999999999999999998754
No 155
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=6.5e-09 Score=60.98 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 53 SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 57999999999999999999999999999999998743
No 156
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.79 E-value=7.1e-09 Score=62.18 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=34.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++||+||+|.+.++|++|+..|||+.+.||+|.|.+
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~ 93 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKY 93 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 479999999999999999999999999999999864
No 157
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=6.1e-09 Score=60.82 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=40.1
Q ss_pred HHHHHHHhhcCCcee-cCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeE
Q psy4383 14 HDARSACLGEDGRTV-LGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQT 68 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l-~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~ 68 (89)
++....++.-.|.+. .-+.+... .++|||||+|.+.++|++||..|||..+.|+.
T Consensus 23 ~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 23 ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred HHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 344444555556544 33333221 36799999999999999999999999999998
No 158
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.79 E-value=1.7e-09 Score=62.53 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=33.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 44 ~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 44 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp EEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred cCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 58999999999999999999999999999999997643
No 159
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.6e-08 Score=58.71 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=43.0
Q ss_pred cCHHHHHHHHhhcCCceecCeEeEEEcccC-eEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 11 SNPHDARSACLGEDGRTVLGQTLGISMHKG-YAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 11 ~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG-~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
...++....++.-.|.+.. +......| ||||+|.++++|++||. |||..+.|++|.+....
T Consensus 19 ~~t~~~l~~~F~~~G~v~~---v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 19 GVDSAQLSEYFLAFGPVAS---VVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCHHHHHHHGGGTSCEEE---EEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCHHHHHHHHHhcCCeEE---EEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 3445555556656665543 22222222 99999999999999999 99999999999765443
No 160
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.78 E-value=2.6e-09 Score=71.84 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=48.4
Q ss_pred ecCHHHHHHHHhhcCC--ceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 10 FSNPHDARSACLGEDG--RTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g--~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+...++....++.-.| .+...+++... .+||||||+|.+.++|++||..|||..|.|++|.+...
T Consensus 78 ~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 78 WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp TTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 3344555666666677 55444433321 37899999999999999999999999999999987644
No 161
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.78 E-value=5.4e-09 Score=60.19 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=41.8
Q ss_pred HHHHHHHhhcCCceecCeEeEE-EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI-SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v-~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++....++.-.|.+..-+.+.. ..++|||||+|.+.++|++||..|||..+.|++|.+.
T Consensus 22 ~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 22 WKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp HHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred HHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3334444445555443332220 1268999999999999999999999999999998643
No 162
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.78 E-value=2.2e-09 Score=60.87 Aligned_cols=34 Identities=32% Similarity=0.584 Sum_probs=32.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCe-EeEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQ-TLGI 35 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~-~i~v 35 (89)
++|||||+|.+.++|+.|+..|||..+.|+ +|+|
T Consensus 46 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 46 TKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred EeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999999999999999999999 8876
No 163
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1e-08 Score=59.28 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 56 SRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 57999999999999999999999999999999998754
No 164
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=5.6e-09 Score=61.48 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=43.4
Q ss_pred HHHHHHHhhc-CCceecCeEeEE--EcccCeEEEEeCCHHHHHHHHHhcCCce-ecCeEEEEEee
Q psy4383 14 HDARSACLGE-DGRTVLGQTLGI--SMHKGYAFIQFSNPHDARSACLGEDGRT-VLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l-~g~~l~g~~i~v--~~~rG~afV~F~~~~~a~~Ai~~l~g~~-l~gr~i~~~~~ 74 (89)
++....++.- .|.+..-+.+.. ..++|||||+|.+.++|++||..|||.. +.|++|.+...
T Consensus 23 ~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 23 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred HHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 3444444444 665543333221 1268999999999999999999999999 99999965443
No 165
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.78 E-value=3.3e-09 Score=59.05 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=31.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.++++|++|++ |||..+.|++|.+.
T Consensus 40 ~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 73 (75)
T 2mss_A 40 HRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECK 73 (75)
T ss_dssp SCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEE
T ss_pred cCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEE
Confidence 57999999999999999998 99999999999754
No 166
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.77 E-value=1.1e-08 Score=59.57 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 43 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 43 SKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 58999999999999999999999999999999998754
No 167
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=1.1e-08 Score=59.36 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=34.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 47 SKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred cCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 5799999999999999999999999999999999874
No 168
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.77 E-value=9.6e-09 Score=63.44 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=32.2
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++|||||+|.+.++|++||..|||..|.|++|.+
T Consensus 87 ~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 87 SRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 6899999999999999999999999999999964
No 169
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.77 E-value=1.1e-08 Score=59.20 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.++
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 56 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 5799999999999999999999999999999999864
No 170
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.77 E-value=7.8e-09 Score=59.09 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=32.1
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|++|+ .|||..+.|++|.+..
T Consensus 47 ~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 47 PKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIP 81 (89)
T ss_dssp CCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEE
T ss_pred cceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEE
Confidence 5899999999999999999 8999999999997543
No 171
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.77 E-value=1.4e-08 Score=61.72 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=33.9
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 63 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 63 LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp BCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4899999999999999999999999999999976544
No 172
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.76 E-value=1.2e-08 Score=60.25 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=32.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhc-CCceecCeEEEEEe
Q psy4383 38 HKGYAFIQFSNPHDARSACLGE-DGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l-~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|++||..| ||..+.|++|.+..
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~ 93 (107)
T 2cph_A 57 HRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 93 (107)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred cCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEe
Confidence 4899999999999999999999 99999999996443
No 173
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.76 E-value=1.3e-08 Score=59.27 Aligned_cols=38 Identities=26% Similarity=0.560 Sum_probs=35.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (98)
T 2cpf_A 49 SMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 86 (98)
T ss_dssp EEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Confidence 47999999999999999999999999999999998743
No 174
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.76 E-value=4.7e-09 Score=61.77 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=31.7
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++|||||+|.+.++|++|| .|||..+.|+.|.+..
T Consensus 60 ~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 60 LKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp CCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred cCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5899999999999999999 8999999999986443
No 175
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.76 E-value=5.2e-09 Score=61.75 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=34.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecC-eEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLG-QTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g-~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.| +.|.|.+.
T Consensus 53 ~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 53 TKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 58999999999999999999999999999 99998753
No 176
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=1.4e-08 Score=61.04 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=42.8
Q ss_pred HHHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++....++.-.|.+..-+.+.- ..++|||||+|.++++|++||..||+ .+.|++|.+...
T Consensus 30 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 30 TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 34444555555555433322221 12689999999999999999999999 899999976554
No 177
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.76 E-value=9.4e-09 Score=59.49 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 56 PKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp EEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 57999999999999999999999999999999998754
No 178
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.76 E-value=1.1e-08 Score=59.41 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=35.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.|.|++.
T Consensus 52 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 52 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 5899999999999999999999999999999999874
No 179
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.76 E-value=1e-08 Score=59.59 Aligned_cols=38 Identities=26% Similarity=0.516 Sum_probs=33.5
Q ss_pred cceeEEEEecCHHHHHHHHhhc-CCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGE-DGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l-~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..+ ++..+.|++|.|++++
T Consensus 43 ~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 43 SRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred cCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999887 4567999999998743
No 180
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.76 E-value=7.6e-09 Score=59.50 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=35.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++..
T Consensus 39 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 39 NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 68999999999999999999999999999999998754
No 181
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.1e-08 Score=60.09 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++....++.-.|.+..-+.+.-. .++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 22 ~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 22 EEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred HHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34444555555654333332221 25899999999999999999999999999999975443
No 182
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=6.5e-09 Score=64.00 Aligned_cols=61 Identities=13% Similarity=-0.033 Sum_probs=44.3
Q ss_pred cCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCC--ceecCeEEEEEee
Q psy4383 11 SNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDG--RTVLGQTLVSYKL 74 (89)
Q Consensus 11 ~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g--~~l~gr~i~~~~~ 74 (89)
...++....++.-.|.+..-+ +-..||||||+|++.++|++||..|++ ..+.|++|.+...
T Consensus 42 ~vte~dL~~lF~~fG~V~~v~---i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 42 DVTEGEVISLGLPFGKVTNLL---MLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp TCCHHHHHHHHTTTSCCCEEE---EEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCHHHHHHHHHhcCCEEEEE---EeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 334455556665666544333 334689999999999999999999984 6899999965443
No 183
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.75 E-value=4.4e-09 Score=68.11 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=44.8
Q ss_pred ecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecC--eEEEEE
Q psy4383 10 FSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLG--QTLVSY 72 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~g--r~i~~~ 72 (89)
+...++....++.-.|.+..-+.. -..++|||||+|.+.++|++|+++|||..|.| ++|++.
T Consensus 56 ~~vted~L~~~Fs~fG~V~~V~i~-~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 56 YPVTLDVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp SCCCHHHHHHHHHHHSCEEEEEEE-ESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEE-eCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 444456666666666665443322 12257899999999999999999999999965 888654
No 184
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=3.5e-09 Score=64.60 Aligned_cols=58 Identities=16% Similarity=-0.058 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCC--ceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDG--RTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g--~~l~gr~i~~~~~ 74 (89)
++....++.-.|.+..- .+-.+||||||+|++.++|++||..||+ ..+.||+|.+...
T Consensus 40 e~~L~~lF~~fG~V~~v---~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 40 DSAVLKLAEPYGKIKNY---ILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SHHHHTTTTTTSCCSEE---EEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred HHHHHHHHHhcCCEEEE---EEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 34455555555554332 3335789999999999999999998864 5699999965443
No 185
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.6e-08 Score=59.51 Aligned_cols=38 Identities=26% Similarity=0.555 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 54 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 57999999999999999999999999999999998743
No 186
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.75 E-value=1.5e-08 Score=59.49 Aligned_cols=39 Identities=28% Similarity=0.514 Sum_probs=36.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG 40 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.++
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 589999999999999999999999999999999987553
No 187
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.75 E-value=1.9e-08 Score=62.51 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=46.3
Q ss_pred ecCHHHHHHHHhhcCCceecC--------eEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 10 FSNPHDARSACLGEDGRTVLG--------QTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g~~l~g--------~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+...++....++.-.|.+... +...-..++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 55 ~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 55 KHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred CCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 344455555666566654331 11122357899999999999999999999999999999965443
No 188
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.74 E-value=1.2e-08 Score=58.02 Aligned_cols=37 Identities=35% Similarity=0.613 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 6899999999999999999999999999999999764
No 189
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.5e-08 Score=59.44 Aligned_cols=38 Identities=32% Similarity=0.578 Sum_probs=35.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 58999999999999999999999999999999998743
No 190
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.5e-08 Score=60.28 Aligned_cols=38 Identities=32% Similarity=0.608 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 60 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 60 GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 57999999999999999999999999999999998743
No 191
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.74 E-value=4.9e-09 Score=65.71 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=44.3
Q ss_pred ecCHHHHHHHHhhcCCc---eecCeEeEE--EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 10 FSNPHDARSACLGEDGR---TVLGQTLGI--SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g~---~l~g~~i~v--~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
|...++.....+.-.|. +..-+.+.. ..++|||||+|.++++|++||+ |||..++||.|.+...
T Consensus 54 ~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 54 WSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp TTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 33444444555544554 222222221 2368999999999999999999 9999999999987654
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.5e-08 Score=60.85 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=35.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|++|.|.+..
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~ 100 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 100 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 58999999999999999999999999999999998743
No 193
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=4e-08 Score=58.65 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q psy4383 14 HDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVS 71 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~ 71 (89)
++....++.-.|.+..-+.+ ..++|||||+|.++++|++||..+++ +.|++|.+
T Consensus 31 e~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred HHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 45556666667765544332 35899999999999999999998665 67898864
No 194
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.8e-08 Score=58.80 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 48 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 48 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 68999999999999999999999999999999998743
No 195
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.74 E-value=6.5e-09 Score=60.84 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=34.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|+|++.
T Consensus 62 ~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 62 LKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 5799999999999999999999999999999998753
No 196
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.74 E-value=1.5e-08 Score=59.91 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++..
T Consensus 69 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 69 SLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 58999999999999999999999999999999998643
No 197
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.6e-08 Score=60.40 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 64 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 64 PKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp BCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred eeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 57999999999999999999999999999999998744
No 198
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.74 E-value=7.8e-09 Score=61.39 Aligned_cols=39 Identities=28% Similarity=0.542 Sum_probs=35.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCe-EeEEEcccC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQ-TLGISMHKG 40 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~-~i~v~~~rG 40 (89)
++|||||+|.+.++|+.|+..|||..+.|+ +|.|.+.+.
T Consensus 60 ~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 60 TKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp SCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 589999999999999999999999999998 999987543
No 199
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.6e-08 Score=59.45 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=34.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 56 SKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred eeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5799999999999999999999999999999999874
No 200
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=4.3e-09 Score=62.55 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=32.6
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.++++|++||. +|+..+.||.|.+...
T Consensus 54 ~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 54 VTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp EEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred EeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 68999999999999999995 8999999999977554
No 201
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.73 E-value=1.4e-08 Score=59.18 Aligned_cols=37 Identities=32% Similarity=0.501 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 49 PKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred cCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5799999999999999999999999999999999864
No 202
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.73 E-value=1.8e-08 Score=59.28 Aligned_cols=37 Identities=19% Similarity=0.460 Sum_probs=34.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+ .|||..+.|+.|.|.+.+
T Consensus 55 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 55 FKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp EEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred cceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 5799999999999999999 899999999999998743
No 203
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=3.5e-09 Score=60.27 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=31.2
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
++|||||+|.+.++|++||..|||..+.|+.|+
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 46 CKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred cCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 589999999999999999999999999999884
No 204
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.9e-08 Score=60.53 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=33.7
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
++|||||+|.+.++|++||.. ||..|.|++|.+....
T Consensus 56 ~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 56 GLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVT 92 (114)
T ss_dssp CSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECC
Confidence 789999999999999999996 9999999999876653
No 205
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.3e-08 Score=60.35 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=32.7
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.++++|++||.. ||..++||.|.+...
T Consensus 56 ~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 56 STGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp BCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred cceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 689999999999999999997 999999999976544
No 206
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.4e-08 Score=59.57 Aligned_cols=38 Identities=29% Similarity=0.608 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 53 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 58999999999999999999999999999999998743
No 207
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.72 E-value=3e-08 Score=72.22 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=46.1
Q ss_pred CHHHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 12 NPHDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 12 ~~~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
..++....++.-.|.+...+++.- ..++|||||+|.+.++|++||..|||..|.|++|.|....
T Consensus 114 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 114 TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 334445555555555444333221 1268999999999999999999999999999999776654
No 208
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.71 E-value=3e-08 Score=63.09 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=33.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..|.|++|.+...
T Consensus 113 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 113 SKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5799999999999999999999999999999965443
No 209
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=2e-08 Score=58.74 Aligned_cols=38 Identities=32% Similarity=0.571 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 57999999999999999999999999999999998744
No 210
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=1.7e-08 Score=57.29 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=34.3
Q ss_pred cceeEEEEecCHHHHHHHHhhc-CCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGE-DGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l-~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..| +|..+.|+.|.|++.
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4799999999999999999999 999999999998764
No 211
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.3e-08 Score=58.82 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCC-ceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDG-RTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g-~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..||| ..+.|+.|.|++.+
T Consensus 43 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 43 KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 589999999999999999999999 99999999998743
No 212
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.71 E-value=1.7e-08 Score=60.46 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 66 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 66 SKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred cCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 57999999999999999999999999999999998743
No 213
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.71 E-value=5.8e-09 Score=62.16 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=33.4
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++|||||+|.+.++|++||. |||..++||.|.+...
T Consensus 53 ~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 53 KRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEI 89 (107)
T ss_dssp TTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEEC
T ss_pred CEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEEC
Confidence 378999999999999999999 9999999999976554
No 214
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.71 E-value=1.1e-08 Score=61.44 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|+|++.
T Consensus 81 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 81 SKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred cCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 5899999999999999999999999999999999764
No 215
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=2e-08 Score=57.78 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=34.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+. |||..+.|+.|.|.+.+
T Consensus 49 ~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 49 KTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp EEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 58999999999999999999 99999999999998643
No 216
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=9e-09 Score=60.10 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=35.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 55 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 55 PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 58999999999999999999999999999999998654
No 217
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.70 E-value=1.6e-08 Score=58.70 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 50 MRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp HTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred cCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence 47999999999999999999999999999999998754
No 218
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.70 E-value=2.4e-08 Score=56.91 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++....++.-.|.+..-+.+.- ..++|||||+|.+.++|++||+ +++..+.|++|.+.
T Consensus 25 ~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 25 KKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3444455545555443332221 1258999999999999999996 68899999999764
No 219
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.70 E-value=2.2e-08 Score=59.93 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.|.|.+.
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 56 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4799999999999999999999999999999999874
No 220
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=2.4e-08 Score=58.72 Aligned_cols=37 Identities=30% Similarity=0.493 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 54 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4899999999999999999999999999999999864
No 221
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.70 E-value=1.6e-08 Score=59.59 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCCceecCeEeEE--EcccCeEEEEeCCHHHHHHHHHhcCCceecC---eEEEEEe
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGI--SMHKGYAFIQFSNPHDARSACLGEDGRTVLG---QTLVSYK 73 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v--~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~g---r~i~~~~ 73 (89)
.++....++.-.|.+..-+.+.- ..++|||||+|.+.++|++||..|||..+.| ++|.+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 28 SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 34445555555555433222211 1248999999999999999999999999998 9886543
No 222
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.70 E-value=2e-08 Score=64.00 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=34.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 98 skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 98 SKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp EEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 5899999999999999999999999999999999764
No 223
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=3.8e-08 Score=58.10 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=38.7
Q ss_pred cCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 29 LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
+|..+.+++-.+.+||+|++.++|.+||. |||..+.||.|++..
T Consensus 39 ~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 39 FGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIAL 82 (91)
T ss_dssp TCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEE
T ss_pred CCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEe
Confidence 55677778788889999999999999999 999999999997543
No 224
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=1.3e-08 Score=60.37 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=33.2
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcC--CceecCeEEEEEee
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGED--GRTVLGQTLVSYKL 74 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~--g~~l~gr~i~~~~~ 74 (89)
.++|||||+|.++++|++||..|| +..+.|++|.+...
T Consensus 50 ~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 50 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred CcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 368999999999999999999996 59999999965443
No 225
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.70 E-value=2.3e-08 Score=57.05 Aligned_cols=37 Identities=24% Similarity=0.493 Sum_probs=34.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+ .|||..+.|+.|.|++.+
T Consensus 47 ~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 47 PKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp CCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 5899999999999999999 899999999999998754
No 226
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.8e-08 Score=58.89 Aligned_cols=38 Identities=24% Similarity=0.494 Sum_probs=35.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 57 PKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred EEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 57999999999999999999999999999999998743
No 227
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.6e-08 Score=60.47 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=35.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 68 ~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 68 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 48999999999999999999999999999999998754
No 228
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.3e-08 Score=58.94 Aligned_cols=37 Identities=32% Similarity=0.500 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 46 SKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 5799999999999999999999999999999999863
No 229
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.68 E-value=2.2e-08 Score=61.37 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=33.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++||+||+|.+.++|..|+..|||+.+.||+|.|.+
T Consensus 70 ~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~ 105 (118)
T 3ue2_A 70 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 105 (118)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEE
Confidence 469999999999999999999999999999999865
No 230
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.13 E-value=2.2e-09 Score=64.65 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=34.5
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 55 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 55 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 36899999999999999999999999999999976554
No 231
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.67 E-value=2.9e-08 Score=58.99 Aligned_cols=37 Identities=27% Similarity=0.519 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 67 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 67 SKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5799999999999999999999999999999999864
No 232
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.67 E-value=3.4e-08 Score=56.14 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=32.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
++|||||+|.+.++|+.|+ .|||..+.|+.|.|+
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEe
Confidence 3799999999999999999 999999999999986
No 233
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=1.7e-08 Score=59.44 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 56 HQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp BCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5799999999999999999999999999999999864
No 234
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.67 E-value=1.6e-08 Score=59.32 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=34.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+. |||..+.|+.|.|.+.+
T Consensus 57 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 57 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred cCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 68999999999999999998 99999999999998743
No 235
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=3.4e-08 Score=58.21 Aligned_cols=58 Identities=14% Similarity=0.286 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++....++.-.|.+..-+.+.- ..++|||||+|.+.++|++||.. ||..+.|++|.+.
T Consensus 30 ~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 30 QETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp HHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred HHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 3444445545565444333322 13679999999999999999998 9999999999643
No 236
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.66 E-value=2.3e-08 Score=60.94 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=34.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++||+||+|.+.++|+.|+..|||+.+.||.|.|.+
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~ 89 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAY 89 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 479999999999999999999999999999999875
No 237
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=2.1e-08 Score=59.91 Aligned_cols=37 Identities=32% Similarity=0.380 Sum_probs=34.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 66 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 66 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 5799999999999999999999999999999999874
No 238
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.66 E-value=1.2e-08 Score=56.89 Aligned_cols=59 Identities=10% Similarity=0.170 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++....++.-.|....-+.+.- ..++|||||+|.++++|++|+..++ ..+.|++|.+..
T Consensus 14 ~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 14 QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp SHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 3334444445554433222211 1368999999999999999999999 999999997543
No 239
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.66 E-value=4.9e-08 Score=64.51 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=35.7
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeeeeecceec
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQYYNGCRY 82 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~~~~~~~~ 82 (89)
++|++||+|.+.++|++||..|||++++||+|. +.|++...|
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~---~~~~~~~~f 215 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVV---AEVYDQERF 215 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE---EEECCHHHH
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEE---EEEcCHHHh
Confidence 679999999999999999999999999999996 444444333
No 240
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=3.4e-08 Score=58.21 Aligned_cols=36 Identities=14% Similarity=0.311 Sum_probs=33.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+ .|||..+.|+.|.|.+.
T Consensus 56 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 56 LKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp BCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred cCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 5899999999999999999 89999999999999864
No 241
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.6e-08 Score=59.28 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=35.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 62 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 62 EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 68999999999999999999999999999999987643
No 242
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.65 E-value=2.2e-08 Score=60.61 Aligned_cols=38 Identities=34% Similarity=0.728 Sum_probs=35.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 47 ~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 47 SRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 57999999999999999999999999999999998744
No 243
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=3.6e-08 Score=58.82 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=35.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 55 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 55 SRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 57999999999999999999999999999999998743
No 244
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.64 E-value=1.3e-08 Score=58.56 Aligned_cols=38 Identities=24% Similarity=0.550 Sum_probs=35.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 47 ~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 47 SKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 57999999999999999999999999999999988754
No 245
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=3.2e-08 Score=57.36 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=43.5
Q ss_pred ecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 10 FSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+...++....++.-.|.+..-+.+......|.|||+|.+.++|++||..|||..+.|++|.+...
T Consensus 25 ~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 25 PHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 33444445555544554433321211224456999999999999999999999999999975443
No 246
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.64 E-value=4.4e-08 Score=58.59 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++....++.-.|.+..-+.+.. ..++|||||+|.+.++|++||..+ +..+.|+.|.+..
T Consensus 39 e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 39 QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp HHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred HHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 4444455545555433222221 136899999999999999999976 5999999996543
No 247
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=2.1e-08 Score=58.96 Aligned_cols=38 Identities=32% Similarity=0.593 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 54 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred cCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 57999999999999999999999999999999998743
No 248
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.64 E-value=3.8e-08 Score=61.09 Aligned_cols=38 Identities=26% Similarity=0.443 Sum_probs=35.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 91 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 128 (143)
T 3egn_A 91 MKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 128 (143)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECC
T ss_pred cccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 58999999999999999999999999999999998764
No 249
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=6e-08 Score=58.15 Aligned_cols=60 Identities=12% Similarity=0.206 Sum_probs=41.7
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++....++.-.|.+..-+.+.- ..++|||||+|.+.++|++||.. ||..+.|++|.+...
T Consensus 41 e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 41 EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred HHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3444445545554433222211 12689999999999999999997 999999999975544
No 250
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.64 E-value=2.7e-08 Score=64.48 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=33.4
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++||..|||..+.|++|.+..+
T Consensus 128 ~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 128 SLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred EeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 6899999999999999999999999999999965433
No 251
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=2.2e-08 Score=58.82 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=35.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 49 PKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp EEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 47999999999999999999999999999999988644
No 252
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.64 E-value=2e-08 Score=60.04 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.|.|++.+
T Consensus 67 ~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 67 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 47999999999999999999999999999999998754
No 253
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.64 E-value=3.5e-08 Score=60.81 Aligned_cols=37 Identities=27% Similarity=0.611 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 83 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 83 SRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4899999999999999999999999999999999863
No 254
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.63 E-value=4.5e-08 Score=61.57 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=36.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG 40 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.++
T Consensus 80 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 80 ACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 579999999999999999999999999999999998653
No 255
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=1.8e-08 Score=59.03 Aligned_cols=37 Identities=27% Similarity=0.638 Sum_probs=34.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 53 SRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5799999999999999999999999999999999863
No 256
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=1.2e-08 Score=59.96 Aligned_cols=38 Identities=29% Similarity=0.597 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 54 PRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp BCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 57999999999999999999999999999999998743
No 257
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=4.6e-08 Score=58.13 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=34.8
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
+|||||+|.+.++|+.|+..|+|..+.|+.|.|.+.+
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 7999999999999999999999999999999998743
No 258
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.63 E-value=4.5e-08 Score=58.55 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=35.0
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
+|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 7999999999999999999999999999999998754
No 259
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.63 E-value=2.8e-08 Score=58.60 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhc-CCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGE-DGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l-~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..| ||..+.|+.|.|.+.
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a 94 (107)
T 2cph_A 57 HRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 94 (107)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred cCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence 5899999999999999999999 999999999999874
No 260
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=4.9e-08 Score=58.68 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=30.3
Q ss_pred cccCeEEEEeCCHHHHHHHHHhc---CCc--------eecCeEEEEEeeee
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGE---DGR--------TVLGQTLVSYKLQY 76 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l---~g~--------~l~gr~i~~~~~~~ 76 (89)
.++|||||+|.++++|++||+.| ||+ .+.++++.+.++..
T Consensus 50 ~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~~~~~~~~~v~p~~~ 100 (114)
T 2dnl_A 50 PPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNL 100 (114)
T ss_dssp CTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCSSSCSEEEEEECCCC
T ss_pred CcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCCCcCCCeeeccCCcc
Confidence 35899999999999999999998 666 34455555554433
No 261
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=62.39 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=43.0
Q ss_pred HHHHHHHHhhcCCceec--CeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCc----eecCeEEEEEee
Q psy4383 13 PHDARSACLGEDGRTVL--GQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGR----TVLGQTLVSYKL 74 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~--g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~----~l~gr~i~~~~~ 74 (89)
.++....++.-.|.+.. -+.+.. ..+||||||+|.+. +|++||..|||. .+.|++|.+...
T Consensus 36 te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a 105 (131)
T 2m2b_A 36 TMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFA 105 (131)
T ss_dssp CSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEEC
T ss_pred CHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEEC
Confidence 34445555555555432 222221 13789999999999 999999999999 999999976544
No 262
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=2.4e-08 Score=58.93 Aligned_cols=37 Identities=24% Similarity=0.590 Sum_probs=34.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.
T Consensus 64 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 64 LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred eeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4799999999999999999999999999999999764
No 263
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.62 E-value=2.5e-08 Score=59.76 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=34.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCce--ecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRT--VLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~--l~g~~i~v~~~r 39 (89)
+||||||+|.+.++|..|+..|+|.. +.|++|.|++++
T Consensus 56 ~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 56 KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 58999999999999999999999875 789999998765
No 264
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.62 E-value=6.2e-08 Score=65.55 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=42.2
Q ss_pred HHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 19 ACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 19 Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.++.-.|.+..-+.++-..++|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 32 ~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 32 AIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 87 (282)
T ss_pred HHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence 44444555444333332347899999999999999999999999999999976544
No 265
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.62 E-value=7.4e-08 Score=65.60 Aligned_cols=56 Identities=16% Similarity=0.091 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCcee------------cCeEEEEE
Q psy4383 14 HDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTV------------LGQTLVSY 72 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l------------~gr~i~~~ 72 (89)
++....++.-.|.+..- .|-.++|||||+|.++++|+.|+.+|||..| .|+.|.+.
T Consensus 157 Ee~L~~~F~~fG~I~~v---~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~ 224 (240)
T 3u1l_A 157 ESRIRFVFSRLGDIDRI---RYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVK 224 (240)
T ss_dssp HHHHHHHHHTTSCEEEE---EEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEE
T ss_pred HHHHHHHHHccCCEEEE---EEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEE
Confidence 45555556556655443 3335899999999999999999999999999 89998654
No 266
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.62 E-value=4.9e-08 Score=59.90 Aligned_cols=36 Identities=28% Similarity=0.620 Sum_probs=34.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++
T Consensus 104 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 104 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 589999999999999999999999999999999875
No 267
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=2.1e-08 Score=59.71 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=34.5
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
.|||||.|.+.++|++|+++|+|..+.||+|+|++.+
T Consensus 46 gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 46 GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 3899999999999999999999999999999998743
No 268
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.61 E-value=4.6e-08 Score=61.20 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=39.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHh
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLG 58 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~ 58 (89)
++|||||+|.+.++|+.|+. |||..+.|+.|.|..+ +.++.+.+++.
T Consensus 87 srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a---------~~~e~~~~~~~ 133 (136)
T 2hgl_A 87 QSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS---------HRTEMDWVLKH 133 (136)
T ss_dssp EEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC---------CHHHHHHHHTT
T ss_pred CCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC---------ChHHHHHHHhh
Confidence 68999999999999999999 9999999999988664 45666666553
No 269
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.61 E-value=1.8e-08 Score=59.19 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=34.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+ .|+|..+.|+.|.|++.+
T Consensus 60 ~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 60 LKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp CCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred cCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 5899999999999999999 899999999999887644
No 270
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=6e-08 Score=55.95 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=34.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
.++||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 43 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 43 VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46899999999999999999999999999999998743
No 271
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=6.1e-08 Score=57.88 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=27.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecC
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
++|||||+|.+.++|++||..|||..+.+
T Consensus 65 ~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 65 SRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 58999999999999999999999999943
No 272
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=3.5e-08 Score=56.73 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=34.7
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
+|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 7999999999999999999999999999999998743
No 273
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.61 E-value=3.1e-08 Score=54.99 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=32.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+. |+|..+.|+.|.|++
T Consensus 40 ~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 40 HRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp SCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred cCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 57999999999999999998 999999999998864
No 274
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.60 E-value=6.6e-08 Score=58.51 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=34.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+ .|||..+.|+.|.|.+.+
T Consensus 77 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 77 PKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp CEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred cccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 5899999999999999999 799999999999998754
No 275
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.60 E-value=4.8e-08 Score=57.51 Aligned_cols=37 Identities=30% Similarity=0.481 Sum_probs=34.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
.+|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4789999999999999999999999999999999874
No 276
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=6e-08 Score=58.51 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=33.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+ .|||..+.|+.|.|...
T Consensus 55 ~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 55 NNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 6899999999999999999 69999999999988653
No 277
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.60 E-value=2.8e-08 Score=59.69 Aligned_cols=39 Identities=18% Similarity=0.028 Sum_probs=36.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG 40 (89)
++|||||+|.+.++|+.|+..|||..+.|++|.|.+.+.
T Consensus 45 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 45 GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 589999999999999999999999999999999987554
No 278
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=3e-08 Score=57.78 Aligned_cols=38 Identities=21% Similarity=0.460 Sum_probs=34.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeE----eEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQT----LGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~----i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+. |+|++.+
T Consensus 51 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 51 PAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp EEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred cCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 5799999999999999999999999999998 8887643
No 279
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.60 E-value=2.6e-08 Score=59.33 Aligned_cols=38 Identities=61% Similarity=0.986 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.|.|.+.+
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 58999999999999999999999999999999998743
No 280
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.59 E-value=6e-08 Score=58.78 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=41.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGED 60 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~ 60 (89)
++|||||+|.+.++|+.|+. +||..+.|+.|.|.+. +.++.+.++....
T Consensus 60 ~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a---------~~~~~~~~~~~~~ 108 (118)
T 2db1_A 60 QSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKS---------HRTEMDWVLKHSG 108 (118)
T ss_dssp EEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEE---------CHHHHHHHHHTTS
T ss_pred CCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEEC---------CHHHHHHHHHHhC
Confidence 58999999999999999999 9999999999988654 4566677766444
No 281
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.59 E-value=4.9e-08 Score=61.26 Aligned_cols=38 Identities=32% Similarity=0.616 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 111 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 111 SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp SCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 68999999999999999999999999999999998743
No 282
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=6.4e-08 Score=55.60 Aligned_cols=38 Identities=26% Similarity=0.537 Sum_probs=35.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
.++||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 42 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 42 VKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 46799999999999999999999999999999998743
No 283
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.58 E-value=7.1e-08 Score=57.18 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=34.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcC------CceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGED------GRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~------g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|| |..+.|+.|.|++.
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a 98 (111)
T 1x4h_A 56 SKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLA 98 (111)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECC
T ss_pred CccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEEC
Confidence 58999999999999999999999 99999999999874
No 284
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=4.3e-08 Score=57.17 Aligned_cols=36 Identities=17% Similarity=0.412 Sum_probs=33.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+. |+|..+.|+.|.|.+.
T Consensus 51 ~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 51 PRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 58999999999999999998 9999999999999864
No 285
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.58 E-value=5.5e-08 Score=59.01 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=34.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.
T Consensus 75 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 75 SLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred EeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 5899999999999999999999999999999999864
No 286
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.58 E-value=3.7e-08 Score=60.22 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=35.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 72 ~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 72 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 68999999999999999999999999999999998754
No 287
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.58 E-value=2.8e-08 Score=58.11 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=35.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.|.|++.+
T Consensus 50 ~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 50 DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 47999999999999999999999999999999998743
No 288
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.57 E-value=3.5e-08 Score=60.90 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=35.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 87 ~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 87 SRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 58999999999999999999999999999999997643
No 289
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.57 E-value=1e-07 Score=59.45 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=34.7
Q ss_pred ccee-EEEEecCHHHHHHHHhhcCCceecC--eEeEEEccc
Q psy4383 2 HKGY-AFIQFSNPHDARSACLGEDGRTVLG--QTLGISMHK 39 (89)
Q Consensus 2 ~~Gf-~fV~f~~~~~a~~Ai~~l~g~~l~g--~~i~v~~~r 39 (89)
++|| |||+|.+.++|+.|+..|||..++| +.|+|+++|
T Consensus 64 ~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 64 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 3688 9999999999999999999999999 899998765
No 290
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.57 E-value=7.6e-08 Score=59.73 Aligned_cols=37 Identities=30% Similarity=0.584 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|..|+..|||..+.|+.|.|.+.
T Consensus 128 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 128 SRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 5799999999999999999999999999999999764
No 291
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.57 E-value=1.2e-08 Score=64.18 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=32.9
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.++++|++|| .+|+..+.||.|.+...
T Consensus 85 srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 85 VTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp SSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 6899999999999999999 79999999999976554
No 292
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.57 E-value=2e-08 Score=58.87 Aligned_cols=38 Identities=32% Similarity=0.726 Sum_probs=35.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|+|..+.|+.|.|++.+
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 58999999999999999999999999999999998754
No 293
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=6.2e-08 Score=59.23 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=32.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCcee-----cCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTV-----LGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l-----~g~~i~v~~~ 38 (89)
.||||||+|.+.++|++|+..|||+.+ .++++.|.+.
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a 103 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEec
Confidence 479999999999999999999999998 6788877653
No 294
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.57 E-value=1.5e-07 Score=59.00 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=34.5
Q ss_pred EEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 34 GISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 34 ~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
.+..++|||||+|.++++|++|| +|||..+.|++|.+..
T Consensus 46 ~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~ 84 (172)
T 2g4b_A 46 QINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 84 (172)
T ss_dssp EEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred EecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecC
Confidence 34458999999999999999999 8999999999997644
No 295
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.57 E-value=4.9e-08 Score=56.83 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=34.4
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceec--CeEeEEEccc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVL--GQTLGISMHK 39 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~--g~~i~v~~~r 39 (89)
+|||||+|.+.++|+.|+..|||..+. |+.|.|++.+
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 789999999999999999999999999 9999998754
No 296
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.57 E-value=4.3e-08 Score=57.69 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=34.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecC---eEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLG---QTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g---~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.+ +.|.|.+.
T Consensus 55 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 55 SKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred cCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 48999999999999999999999999998 99999864
No 297
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.56 E-value=2e-07 Score=59.65 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=35.1
Q ss_pred EEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 34 GISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 34 ~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
.+..++|||||+|.++++|++|| .|||..+.|++|.+...
T Consensus 46 ~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~ 85 (198)
T 2yh0_A 46 QINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRP 85 (198)
T ss_dssp EEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECC
T ss_pred EecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCC
Confidence 34458999999999999999999 89999999999976544
No 298
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=5.5e-08 Score=58.17 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=33.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+ .|||..+.|+.|.|.+.
T Consensus 66 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 66 SKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp CCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred cCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 5799999999999999999 89999999999999863
No 299
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.56 E-value=2e-07 Score=58.13 Aligned_cols=59 Identities=22% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 15 DARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 15 ~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
+....++.-.|.+..-+.+... .++|||||+|.++++|++|+..|||..+.|++|.+..
T Consensus 18 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 18 RELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp HHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 3344444455544333322221 2679999999999999999999999999999996543
No 300
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.56 E-value=4.4e-08 Score=61.23 Aligned_cols=38 Identities=34% Similarity=0.664 Sum_probs=35.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|++|.|++.+
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 48999999999999999999999999999999998754
No 301
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.56 E-value=7e-08 Score=63.38 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=35.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.+
T Consensus 142 ~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 142 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 57999999999999999999999999999999987643
No 302
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=3e-08 Score=61.11 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=32.8
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.++++|++||.. |+..+.||.|.+...
T Consensus 67 ~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 67 PTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRS 102 (123)
T ss_dssp EEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEE
T ss_pred EeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEEC
Confidence 689999999999999999995 999999999977654
No 303
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.55 E-value=2.5e-07 Score=65.90 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=41.7
Q ss_pred ecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceec
Q psy4383 10 FSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVL 65 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~ 65 (89)
|...++....++.-.|.+.. +.+-.+||||||+|.+.++|++||++|||+.+.
T Consensus 30 ~~~te~~L~~~F~~~G~V~~---v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 30 NGVSRNQLLPVLEKCGLVDA---LLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp GTCCHHHHHHHHHTTSCEEE---EECCTTCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCHHHHHHHHHhcCCeEE---EEEeCCCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45566777777777776532 333348999999999999999999999999984
No 304
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.55 E-value=3e-08 Score=54.98 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=31.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.++++|++||. +++..+.|++|.+.
T Consensus 40 ~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 40 RRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIK 73 (75)
T ss_dssp SCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEE
T ss_pred cCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEE
Confidence 68999999999999999999 59999999998653
No 305
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=5.6e-08 Score=58.62 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=33.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcC--CceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGED--GRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~--g~~l~g~~i~v~~~r 39 (89)
.||||||+|.+.++|+.|+..|+ +..+.|++|.|++.+
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 37999999999999999999876 478999999998754
No 306
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=4.3e-08 Score=58.41 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=34.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+. ++|..+.|+.|.|.+.+
T Consensus 51 ~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 51 FKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp CCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 68999999999999999999 99999999999997643
No 307
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=6.6e-08 Score=57.21 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=34.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcC--CceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGED--GRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~--g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|+ +..+.|+.|.|.+.+
T Consensus 51 ~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~ 90 (109)
T 2dis_A 51 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 90 (109)
T ss_dssp TCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred cCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcC
Confidence 58999999999999999999996 589999999998743
No 308
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.54 E-value=4.6e-08 Score=58.54 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=34.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCc--eecCeEeEEEcccC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGR--TVLGQTLGISMHKG 40 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~--~l~g~~i~v~~~rG 40 (89)
.+|||||+|.+.++|+.|+..|++. .+.|++|.|++.+.
T Consensus 51 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 51 KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 4699999999999999999998864 59999999987553
No 309
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.54 E-value=6.5e-08 Score=56.97 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=34.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCcee---cCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTV---LGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l---~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+ .+++|.|.+.
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 93 (106)
T 2dgp_A 54 HKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 93 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEEC
Confidence 579999999999999999999999988 8899999864
No 310
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.54 E-value=7.3e-08 Score=62.36 Aligned_cols=39 Identities=31% Similarity=0.426 Sum_probs=35.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecC--eEeEEEcccC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLG--QTLGISMHKG 40 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g--~~i~v~~~rG 40 (89)
++|||||+|.+.++|+.|+..|||..++| +.|+|++++.
T Consensus 83 ~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 83 NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 46899999999999999999999999976 9999987653
No 311
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.54 E-value=4.9e-08 Score=59.23 Aligned_cols=36 Identities=25% Similarity=0.618 Sum_probs=34.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+
T Consensus 63 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 63 LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp BCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 589999999999999999999999999999999986
No 312
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=3.4e-08 Score=57.59 Aligned_cols=38 Identities=29% Similarity=0.514 Sum_probs=35.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 48999999999999999999999999999999998743
No 313
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.53 E-value=3.3e-08 Score=56.69 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=33.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.+ |+.|+..|||..+.|+.|.|++.
T Consensus 42 ~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 42 PKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp CCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 5899999999999 99999999999999999998764
No 314
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=3.6e-08 Score=60.00 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=33.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+. |||..+.|+.|.|.+.
T Consensus 66 ~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 66 ATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp EEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 58999999999999999999 9999999999988654
No 315
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=8.2e-09 Score=58.70 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=33.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.++++++
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 46 CKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred cCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 5899999999999999999999999999999887653
No 316
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.53 E-value=2.7e-07 Score=57.26 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 14 HDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
++....+..-.|.+..-+.+.-. .++|||||+|.++++|++|+..|||..+.|++|.+..
T Consensus 16 ~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 16 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp HHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 33344455555654433332211 2569999999999999999999999999999997543
No 317
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=3.2e-08 Score=58.13 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=34.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCce-ecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRT-VLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~-l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|+|.. +.|+.|.|.+.
T Consensus 50 ~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 50 SKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred ccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 58999999999999999999999999 99999998764
No 318
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=1.6e-07 Score=55.06 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=40.7
Q ss_pred HHHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
.++....++.-.|.+..-+.+.- ..++|||||+|.+.++|++||. ++..+.|++|.+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 28 TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 34445555555555444333222 2368999999999999999999 47899999996443
No 319
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=1.2e-07 Score=56.73 Aligned_cols=36 Identities=19% Similarity=0.528 Sum_probs=33.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..+++ .+.|+.|.|++.
T Consensus 58 ~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 58 SRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred cceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 579999999999999999999998 899999999863
No 320
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.52 E-value=3.5e-08 Score=61.13 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=31.9
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.++++|++||. +++..|+||.|.+...
T Consensus 83 srGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 83 ITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEE
T ss_pred CceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEEC
Confidence 68999999999999999999 5889999999976443
No 321
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=1.3e-07 Score=56.83 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=33.0
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+.. ||..+.|+.|.|.+.
T Consensus 56 ~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 56 GLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp CSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred cceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 689999999999999999986 999999999988653
No 322
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.51 E-value=4.9e-08 Score=60.59 Aligned_cols=38 Identities=32% Similarity=0.616 Sum_probs=35.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.+
T Consensus 88 ~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 88 SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp CCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 58999999999999999999999999999999998754
No 323
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.50 E-value=7.4e-08 Score=57.59 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=34.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 46 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 46 TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4799999999999999999999999999999999863
No 324
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=1.6e-07 Score=55.79 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=32.8
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecC-----eEeEEEc
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLG-----QTLGISM 37 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g-----~~i~v~~ 37 (89)
|||||+|.+.++|+.|+..|||..+.| +.|.|.+
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 899999999999999999999999999 9999986
No 325
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.50 E-value=1.2e-07 Score=59.83 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=35.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|..|+..|||..+.|+.|.|++.+
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 68999999999999999999999999999999998643
No 326
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.7e-07 Score=55.75 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=33.1
Q ss_pred ceeEEEEecCHHHHHHHHhhc--CCceecCeEeEEEccc
Q psy4383 3 KGYAFIQFSNPHDARSACLGE--DGRTVLGQTLGISMHK 39 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l--~g~~l~g~~i~v~~~r 39 (89)
||||||+|.+.++|+.|+..| ++..+.|++|.|++.+
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 799999999999999999976 5788999999998754
No 327
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.49 E-value=1.4e-07 Score=59.96 Aligned_cols=37 Identities=27% Similarity=0.519 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|++|.|.+.
T Consensus 113 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 113 SKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5799999999999999999999999999999999863
No 328
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.48 E-value=1.5e-07 Score=60.90 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=32.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++|||||+|.+.++|++||..|||..+.|++|.+.
T Consensus 69 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 69 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 68999999999999999999999999999999763
No 329
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.47 E-value=6.9e-08 Score=64.82 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=34.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
+||||||+|.+.++|+.||..|||..|.|+.|.|.+.
T Consensus 111 skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 111 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp EEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 6899999999999999999999999999999999763
No 330
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.46 E-value=3.3e-08 Score=60.73 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCc----eecCeEeEEEcccC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGR----TVLGQTLGISMHKG 40 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~----~l~g~~i~v~~~rG 40 (89)
+||||||+|.+. +|+.|+..|||. .+.|+.|.|.+.++
T Consensus 66 ~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 66 NRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp BCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred cceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 689999999999 999999999999 99999999987543
No 331
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.83 E-value=2.1e-08 Score=60.24 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=34.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|++.
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 56 LKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 5799999999999999999999999999999999874
No 332
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=7.3e-08 Score=57.15 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=32.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+. +|+..+.++.|.|..
T Consensus 54 ~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 54 VTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp EEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred EeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 68999999999999999995 899999999999875
No 333
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.45 E-value=2.1e-07 Score=61.72 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=33.1
Q ss_pred cCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 39 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 39 rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 799999999999999999999999999999976443
No 334
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.8e-07 Score=58.79 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=46.0
Q ss_pred EecCHHHHHHHHhhcCCceecCeEeEEE---cccCeEEEEeCC----HHH----HHHHHH--hcCCceecCeEEEEE
Q psy4383 9 QFSNPHDARSACLGEDGRTVLGQTLGIS---MHKGYAFIQFSN----PHD----ARSACL--GEDGRTVLGQTLVSY 72 (89)
Q Consensus 9 ~f~~~~~a~~Ai~~l~g~~l~g~~i~v~---~~rG~afV~F~~----~~~----a~~Ai~--~l~g~~l~gr~i~~~ 72 (89)
.+..+++....++.-.|.+..-+.+... .++|||||+|.+ +++ |.+|+. +|||..|+||+|++.
T Consensus 15 ~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ 91 (136)
T 2j8a_A 15 TTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVI 91 (136)
T ss_dssp CCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEE
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEE
Confidence 3455667777777777755444444333 379999999996 444 899999 899999999999754
No 335
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.44 E-value=2.5e-07 Score=52.58 Aligned_cols=35 Identities=14% Similarity=0.338 Sum_probs=31.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+. +++..+.|+.|.|++
T Consensus 52 ~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 52 SRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp EEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred cccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 58999999999999999996 688899999999864
No 336
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.43 E-value=7.8e-08 Score=57.18 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=39.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGE 59 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l 59 (89)
++|||||+|.+.++|+.|+. ++|..+.|+.|.|... +..+...++...
T Consensus 54 ~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a---------~~~~~~~~~~~~ 101 (107)
T 2lmi_A 54 RRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEI---------NNEDVDALMKSL 101 (107)
T ss_dssp TCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEEC---------CHHHHHHHHHTT
T ss_pred EeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEEC---------CHHHHHHHHHhh
Confidence 68999999999999999999 9999999998877543 456666666543
No 337
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.43 E-value=8e-08 Score=53.37 Aligned_cols=35 Identities=11% Similarity=0.312 Sum_probs=32.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+..++ ..+.|+.|.|++
T Consensus 41 ~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 41 SRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred cCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 57999999999999999999999 999999998864
No 338
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.43 E-value=2e-07 Score=54.55 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=39.8
Q ss_pred HHHHHHHhhcCCceecCeEeEE--EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI--SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v--~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++....++.-.|.+..-+.+.. ..++|||||+|.+.++|++||. +|..+.|++|.+...
T Consensus 23 ~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 23 ETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred HHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 3444444444554433222211 1267999999999999999999 999999999975444
No 339
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=7e-08 Score=58.76 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=33.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcC--CceecCeEeEEEcccC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGED--GRTVLGQTLGISMHKG 40 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~--g~~l~g~~i~v~~~rG 40 (89)
+||||||+|.+.++|+.|+..|+ +..+.|++|.|++.+.
T Consensus 61 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 61 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 58999999999999999999885 4569999999987543
No 340
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=3.4e-07 Score=54.77 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=33.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+.. +|..+.|+.|.|.+.
T Consensus 68 ~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 68 SRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp CCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred cCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 579999999999999999997 999999999999873
No 341
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=3e-07 Score=54.59 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=36.7
Q ss_pred cCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 29 LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
.|..+.+++-.+-+||+|.+.++|.+||+ |||..+.||.|++.
T Consensus 48 ~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 48 YGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKIS 90 (95)
T ss_dssp HSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEEE
T ss_pred CCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEe
Confidence 45566666666669999999999999998 99999999999754
No 342
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=1.9e-07 Score=55.15 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=33.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+.. ++..+.|+.|.|..+
T Consensus 56 ~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 56 STGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp BCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred cceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 589999999999999999997 999999999998653
No 343
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.39 E-value=1e-07 Score=57.04 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=33.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCc--eecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGR--TVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~--~l~g~~i~v~~~r 39 (89)
.||||||+|.+.++|+.|+..|++. .+.|++|.|++.+
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 4799999999999999999988664 5899999998754
No 344
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.39 E-value=8.5e-07 Score=59.84 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=41.7
Q ss_pred HHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q psy4383 14 HDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSY 72 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~ 72 (89)
++....++.-.|.+. .+.+..++|||||+|.+.++|++||..|||..+.|++|.+.
T Consensus 36 e~~l~~~F~~~G~i~---~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 36 EEDFKRLFERYGEPS---EVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp HHHHHHHTGGGCCCS---EEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred HHHHHHHHHhcCCEE---EEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 333444444444422 23444579999999999999999999999999999999654
No 345
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=2e-07 Score=55.58 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=31.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCcee--------cCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTV--------LGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l--------~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+..|||..+ .+++|.|.+
T Consensus 65 ~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~ 108 (114)
T 1x5o_A 65 SRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKF 108 (114)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEE
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEc
Confidence 579999999999999999999999999 466677654
No 346
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=1.7e-07 Score=55.18 Aligned_cols=36 Identities=17% Similarity=0.408 Sum_probs=33.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+.. +|..+.|+.|.|.+.
T Consensus 57 ~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 57 SRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp EEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred cceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 579999999999999999998 999999999998763
No 347
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.38 E-value=1.3e-06 Score=62.14 Aligned_cols=59 Identities=20% Similarity=0.435 Sum_probs=46.1
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceec---Ce--EeEEEc--------------ccCeEEE-EeCCHHHHHHHHHhcC
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVL---GQ--TLGISM--------------HKGYAFI-QFSNPHDARSACLGED 60 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~---g~--~i~v~~--------------~rG~afV-~F~~~~~a~~Ai~~l~ 60 (89)
+||||||+|.+.++|++|+..|||+.+. |+ ++.+.+ ..|.-++ .|-+.++++.-++.++
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~~~~~~~~~~lp~Gl~~~p~fis~~Ee~~Ll~~i~ 133 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVD 133 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSEEEEEEECCSCCTTEEEETTCSCHHHHHHHHTTCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeecccccccccccCCCceEEEcCcCCHHHHHHHHHhcc
Confidence 6899999999999999999999999883 44 454442 4564444 6778888888777776
No 348
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.38 E-value=4.4e-07 Score=56.04 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=33.7
Q ss_pred cee-EEEEecCHHHHHHHHhhcCCceecC--eEeEEEcccC
Q psy4383 3 KGY-AFIQFSNPHDARSACLGEDGRTVLG--QTLGISMHKG 40 (89)
Q Consensus 3 ~Gf-~fV~f~~~~~a~~Ai~~l~g~~l~g--~~i~v~~~rG 40 (89)
.|| |||+|.+.++|+.|+..|||..+.| +.|+|.+.+.
T Consensus 61 ~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 61 NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 386 9999999999999999999999988 5899987653
No 349
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.37 E-value=2.7e-07 Score=59.74 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=34.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 128 ~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 128 SLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred EeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5799999999999999999999999999999999864
No 350
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.37 E-value=2.1e-07 Score=58.20 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCCceecCeEeEEE-----cccCeEEEEeCCHHHHHHHHHhcCCceec
Q psy4383 13 PHDARSACLGEDGRTVLGQTLGIS-----MHKGYAFIQFSNPHDARSACLGEDGRTVL 65 (89)
Q Consensus 13 ~~~a~~Ai~~l~g~~l~g~~i~v~-----~~rG~afV~F~~~~~a~~Ai~~l~g~~l~ 65 (89)
.++....++.-.|.+..-+.+.-. .++|||||+|.+.++|++|+..|||..+.
T Consensus 16 te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 16 SEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 344455555566765554444432 47899999999999999999999999886
No 351
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=1.9e-07 Score=57.37 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=33.3
Q ss_pred ceeEEEEecCHHHHHHHHhhcCC--ceecCeEeEEEccc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDG--RTVLGQTLGISMHK 39 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g--~~l~g~~i~v~~~r 39 (89)
||||||+|.+.++|+.|+..|++ ..+.|++|.|.+.+
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 79999999999999999998874 68999999998754
No 352
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.36 E-value=2.4e-07 Score=59.61 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=41.7
Q ss_pred HHHHHHHhhcCCceecCeEeEEEc---ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGISM---HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v~~---~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++....++.-.|. ...|.+ .+|||||+|.+.++|++||..|||..+.|++|.+...
T Consensus 18 ~~~l~~~F~~~G~-----i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 18 PQSLFILFGVYGD-----VQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp HHHHHHHHHTTCC-----CSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred HHHHHHHHHhcCC-----EEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 3444445545554 333333 3799999999999999999999999999999976544
No 353
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.35 E-value=5.2e-07 Score=65.70 Aligned_cols=38 Identities=29% Similarity=0.612 Sum_probs=35.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.||..|||..|.|+.|.|.+.+
T Consensus 143 ~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 143 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred ccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 58999999999999999999999999999999998754
No 354
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.35 E-value=7.3e-07 Score=58.33 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=42.1
Q ss_pred CHHHHHHHHhhcCCceecCeEeEE--EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 12 NPHDARSACLGEDGRTVLGQTLGI--SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 12 ~~~~a~~Ai~~l~g~~l~g~~i~v--~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
..++....++.-.|.+..-+.+.. ..++|||||+|+++++|++||..+ +..+.|++|.+...
T Consensus 121 ~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 121 ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFK 184 (193)
T ss_dssp CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEET
T ss_pred CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEh
Confidence 344445555555555443332221 126899999999999999999865 45999999976543
No 355
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.34 E-value=5.8e-07 Score=53.60 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=32.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+..+ +..+.|+.|.|.+.
T Consensus 66 ~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 66 SRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp CTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred cCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 5899999999999999999976 59999999998764
No 356
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=4.2e-07 Score=55.90 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=39.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHh
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLG 58 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~ 58 (89)
++|||||+|.+.++|+.|+.. |+..+.++.|.|... +.++...++..
T Consensus 67 ~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a---------~~~e~~~~~~~ 113 (123)
T 2dha_A 67 PTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRS---------TAAEVQQVLNR 113 (123)
T ss_dssp EEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEE---------CHHHHHHHHHH
T ss_pred EeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEEC---------CHHHHHHHHHh
Confidence 589999999999999999985 999999998877543 56777777764
No 357
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=4.7e-07 Score=53.91 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=31.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
++|||||+|.+.++|+.|+..+++ +.+++|+|.+.+
T Consensus 53 ~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~ 88 (100)
T 2d9o_A 53 KPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLE 88 (100)
T ss_dssp SSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSS
T ss_pred CCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEcc
Confidence 689999999999999999998655 579999998743
No 358
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.33 E-value=7.8e-07 Score=56.71 Aligned_cols=60 Identities=10% Similarity=0.180 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCceecCeEeEE---EcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 14 HDARSACLGEDGRTVLGQTLGI---SMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 14 ~~a~~Ai~~l~g~~l~g~~i~v---~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++....++.-.|.+..-+.+.. ..++|||||+|.+.++|++||.. ++..+.|+.|.+...
T Consensus 27 e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 27 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred HHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4444455555565444333322 12689999999999999999985 999999999976554
No 359
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.32 E-value=1.9e-07 Score=51.60 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=31.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+. +++..+.|+.+.|++
T Consensus 40 ~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 40 RRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKV 74 (75)
T ss_dssp SCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEE
T ss_pred cCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEE
Confidence 58999999999999999998 589999999988763
No 360
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=1.4e-06 Score=50.91 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=31.5
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+. ++..+.|+.|.|.+.
T Consensus 56 ~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 56 SKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp EEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred ccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 57999999999999999998 477899999999874
No 361
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.28 E-value=4.5e-07 Score=54.55 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=28.3
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecCeE
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLGQT 32 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~ 32 (89)
|||||+|.+.++|+.|+..|||..+.|+.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 89999999999999999999999999988
No 362
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.25 E-value=1.4e-06 Score=50.24 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=37.0
Q ss_pred ecCHHHHHHHHhhcCCceecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCcee--cCeEEEEEee
Q psy4383 10 FSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTV--LGQTLVSYKL 74 (89)
Q Consensus 10 f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l--~gr~i~~~~~ 74 (89)
+...++....++.-.|.+..-+.+. -+||||||+|+++++|++ |+|..+ .|++|.+...
T Consensus 21 ~~~te~~L~~~F~~~G~i~~v~i~~--~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 21 EDMTAEELQQFFCQYGEVVDVFIPK--PFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEECCS--SCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCHHHHHHHHhccCCEEEEEEee--CCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 3344555555555555433322221 168999999999999983 566655 4888875543
No 363
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.24 E-value=7.1e-07 Score=58.87 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=33.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|++||+|.+.++|++|+..|||+.+.||+|.+.+
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 579999999999999999999999999999998864
No 364
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.24 E-value=1.7e-07 Score=58.90 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=32.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+ .+|+..+.++.|.|..
T Consensus 85 srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 85 VTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp SSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 6899999999999999999 7999999999998865
No 365
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.24 E-value=6.9e-07 Score=55.63 Aligned_cols=36 Identities=11% Similarity=0.357 Sum_probs=33.3
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
++|||||+|.+.++|+.|+. ++|..+.|+.|.|.+.
T Consensus 128 ~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 128 SRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp TSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 57999999999999999998 8999999999999764
No 366
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.21 E-value=4.1e-07 Score=56.29 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=31.6
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+. +++..+.|+.|.|..
T Consensus 83 srGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 83 ITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 68999999999999999998 578999999988764
No 367
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.3e-06 Score=54.84 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=32.4
Q ss_pred CcceeEEEEecC----HHH----HHHHHh--hcCCceecCeEeEEEccc
Q psy4383 1 MHKGYAFIQFSN----PHD----ARSACL--GEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 1 ~~~Gf~fV~f~~----~~~----a~~Ai~--~l~g~~l~g~~i~v~~~r 39 (89)
.++|||||+|.+ +++ |..|+. .++|..+.|+.|+|.+.+
T Consensus 46 ~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 46 LPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp CEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred ceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 479999999996 444 788988 899999999999999755
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.18 E-value=1.1e-06 Score=59.87 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=35.4
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCcee------------cCeEeEEEccc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTV------------LGQTLGISMHK 39 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l------------~g~~i~v~~~r 39 (89)
+||||||+|.+.++|+.|+..|+|..+ .|+.|.|.+.+
T Consensus 178 ~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 178 SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEcc
Confidence 589999999999999999999999999 89999998754
No 369
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.16 E-value=2.6e-06 Score=55.68 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=33.7
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcccCe
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGY 41 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~ 41 (89)
++|||||+|.+.++|+.|+..+ +..+.|+.|.|.+.+-|
T Consensus 149 ~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 149 FKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp EEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 5899999999999999999855 45899999999876643
No 370
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.5e-06 Score=49.21 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=32.9
Q ss_pred ceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEcc
Q psy4383 3 KGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMH 38 (89)
Q Consensus 3 ~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~ 38 (89)
.|.|||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 54 ~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 54 TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356999999999999999999999999999999764
No 371
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.13 E-value=1.3e-06 Score=51.00 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=30.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.|+. +|..+.|+.|.|..
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred ccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 57999999999999999998 88899999988764
No 372
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=2.2e-06 Score=49.47 Aligned_cols=32 Identities=9% Similarity=0.243 Sum_probs=30.7
Q ss_pred eEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 5 YAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 5 f~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
||||+|.+.++|+.|+. |||..+.|+.|.|++
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 99999999999999999 999999999999875
No 373
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=2.5e-06 Score=51.05 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=24.9
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEE
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v 35 (89)
++|||||+|.+.++|+.|+..|+ .+.|+.+.+
T Consensus 51 ~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 51 PKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp TTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred cccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 58999999999999999999882 244444433
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=5.8e-06 Score=48.68 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=31.9
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecCeEeEEEccc
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~r 39 (89)
+.+||+|.+.++|.+|+. |||..++||.|+|++.+
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 458999999999999998 99999999999998643
No 375
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=4.1e-06 Score=47.66 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=26.2
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
++|||||+|.+.++|++|+.. ...+.|++|.+...
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 689999999999999865332 34558898865443
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=1.2e-05 Score=47.73 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=29.8
Q ss_pred EEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 6 AFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
+||+|.+.++|.+|+. |||..+.||.|+|+.
T Consensus 61 ~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp EEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred EEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence 8999999999999998 999999999999975
No 377
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.86 E-value=2.3e-05 Score=45.00 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=25.8
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCcee--cCeEeEEEcc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTV--LGQTLGISMH 38 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l--~g~~i~v~~~ 38 (89)
+||||||+|.+.++|+. ++|..+ .|+.+.|...
T Consensus 47 srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 58999999999999883 556554 4888888653
No 378
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.63 E-value=3.3e-05 Score=43.80 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=26.2
Q ss_pred cceeEEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 2 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 2 ~~Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
++|||||+|.+.++|+.++.. ...+.++.|.|.+
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISN 74 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEEC
T ss_pred CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEe
Confidence 589999999999999865332 3445888888876
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00026 Score=43.09 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=37.8
Q ss_pred eEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEee
Q psy4383 31 QTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKL 74 (89)
Q Consensus 31 ~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~ 74 (89)
+.|......|=|+|+|.|...|.+|.-+|||.++.||+|+.-++
T Consensus 54 ~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 54 RKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp SEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred eEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 35555566777999999999999999999999999999987665
No 380
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.21 E-value=0.00071 Score=41.52 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=35.6
Q ss_pred cCeEeEEEcccC--eEEEEeCC-HHHHHHHHHhc--CCceecCeEEEEEee
Q psy4383 29 LGQTLGISMHKG--YAFIQFSN-PHDARSACLGE--DGRTVLGQTLVSYKL 74 (89)
Q Consensus 29 ~g~~i~v~~~rG--~afV~F~~-~~~a~~Ai~~l--~g~~l~gr~i~~~~~ 74 (89)
+|.+..|.+.+| .|||+|.+ +++|+.|+.+| +|..|.|..+++-.|
T Consensus 43 ~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 43 HGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 455666766544 79999999 89999999999 488888977765443
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.024 Score=34.43 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=30.4
Q ss_pred eeEEEEecCHHHHHHHHhhcCCceecCeEeEEE
Q psy4383 4 GYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36 (89)
Q Consensus 4 Gf~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~ 36 (89)
|-|+|+|.+...|-+|.-.|+|.++.|++|+|.
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 449999999999999998999999999999885
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.45 E-value=0.022 Score=34.00 Aligned_cols=34 Identities=35% Similarity=0.389 Sum_probs=31.7
Q ss_pred EEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
..|.|.+.++|.+|-..|++..+.|++++++..|
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 6789999999999999999999999999988776
No 383
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.25 E-value=0.012 Score=35.91 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=30.1
Q ss_pred eEEEEecC-HHHHHHHHhhcC--CceecCeEeEEEcccC
Q psy4383 5 YAFIQFSN-PHDARSACLGED--GRTVLGQTLGISMHKG 40 (89)
Q Consensus 5 f~fV~f~~-~~~a~~Ai~~l~--g~~l~g~~i~v~~~rG 40 (89)
.|||.|.+ .++|+.|+.++| |.++.+..+++.+..|
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 69999999 899999999994 7788888877766554
No 384
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.32 E-value=0.15 Score=31.10 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=32.9
Q ss_pred cCeEeEEEc--ccCeEEEEeCCHHHHHHHHHhcCCceecC-eEEEEEe
Q psy4383 29 LGQTLGISM--HKGYAFIQFSNPHDARSACLGEDGRTVLG-QTLVSYK 73 (89)
Q Consensus 29 ~g~~i~v~~--~rG~afV~F~~~~~a~~Ai~~l~g~~l~g-r~i~~~~ 73 (89)
.|.++.... ...+-.|+|+++.+|++||. .||..++| -.|-+++
T Consensus 47 ~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 47 YGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp TSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred hCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 344444444 45789999999999999999 79999986 4454443
No 385
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.69 E-value=0.14 Score=31.78 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=28.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~ 70 (89)
..++--|+|+++.+|.+||. -||..++|..|=
T Consensus 61 g~NWikItYds~~~A~rAL~-~NG~ii~G~mIG 92 (132)
T 3p3d_A 61 GNSWTKITYDNPASAVDALL-ENGAVFNGVLLG 92 (132)
T ss_dssp ETTEEEEEBSSHHHHHHHHT-TTTCEETTEECE
T ss_pred CCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEE
Confidence 35788999999999999999 999999997543
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.89 E-value=0.14 Score=30.48 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=29.3
Q ss_pred EEEEecCHHHHHHHHhhcCCceecCeEeEEEc
Q psy4383 6 AFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~ 37 (89)
.-|.|.++++|.+|-..|++..+.|+.++|-+
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 46899999999999999999999999998854
No 387
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.85 E-value=0.67 Score=28.66 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=25.4
Q ss_pred EEEEecCHHHHHHHHhhcCCceecCeEeEE
Q psy4383 6 AFIQFSNPHDARSACLGEDGRTVLGQTLGI 35 (89)
Q Consensus 6 ~fV~f~~~~~a~~Ai~~l~g~~l~g~~i~v 35 (89)
--|.|.+..+|++|+. .||+++.|..|-|
T Consensus 65 ikItYds~~~A~rAL~-~NG~ii~G~mIGV 93 (132)
T 3p3d_A 65 TKITYDNPASAVDALL-ENGAVFNGVLLGV 93 (132)
T ss_dssp EEEEBSSHHHHHHHHT-TTTCEETTEECEE
T ss_pred EEEEcCCHHHHHHHHH-hCCeEeCcEEEEE
Confidence 4799999999999998 9999999986644
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.94 E-value=1.9 Score=25.59 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=33.9
Q ss_pred ecCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 28 VLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 28 l~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
-.|....|+...+-|+|+|.+.+.|++-|+ ..-+.|.+..|.+..
T Consensus 36 GGG~V~~v~~~~~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 36 GGGPVLSWQRLGCGGVLTFREPADAERVLA-QADHELHGAQLSLRP 80 (104)
T ss_dssp CCCCEEEEEEETTEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEE
T ss_pred CCceeeEEEEcCCcEEEEEcChHHHHHHhc-CCcceecCeEEEEEc
Confidence 345555666555789999999999999988 456778888887644
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=79.91 E-value=2.2 Score=25.80 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=24.4
Q ss_pred eEEEEecCHHHHHHHHhhcCCceecC-eEeEE
Q psy4383 5 YAFIQFSNPHDARSACLGEDGRTVLG-QTLGI 35 (89)
Q Consensus 5 f~fV~f~~~~~a~~Ai~~l~g~~l~g-~~i~v 35 (89)
.-.|.|.+..+|++|+. .||..+.+ -.|-|
T Consensus 61 WihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 61 WMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp EEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred eEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 45799999999999998 79999986 44434
No 390
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=76.40 E-value=2.6 Score=23.97 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=23.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCc
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGR 62 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~ 62 (89)
-.||-||+++..++...+|+...|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 6899999999999999999988876
No 391
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=72.40 E-value=3.6 Score=22.08 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=34.4
Q ss_pred HHHHhhcCCceecCeEe-EEEcccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q psy4383 17 RSACLGEDGRTVLGQTL-GISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73 (89)
Q Consensus 17 ~~Ai~~l~g~~l~g~~i-~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~ 73 (89)
..++....| +.++.| .+++...|.||+-... .++.++..|++..+.|+++.+..
T Consensus 19 vg~i~~~~g--i~~~~IG~I~i~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 19 VGTIAKIDG--VSADDIGIITIMDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp HHHHHTSTT--CCGGGEEEEEECSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEE
T ss_pred HHHHHHccC--CChhhccEEEEeCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEE
Confidence 344443333 344333 4666888999998764 57788999999999999886543
No 392
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=70.68 E-value=4.8 Score=22.55 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCceecCeEeEEEcccCeEEEEeCCH
Q psy4383 24 DGRTVLGQTLGISMHKGYAFIQFSNP 49 (89)
Q Consensus 24 ~g~~l~g~~i~v~~~rG~afV~F~~~ 49 (89)
+|...-|.+++|...++..+|.|+|-
T Consensus 39 DGlfYLGTI~kV~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 39 DGLLYLGTIKKVDSAREVCLVQFEDD 64 (79)
T ss_dssp TSCCCEEEEEEEETTTTEEEEEETTS
T ss_pred CCCEEeEEEEEeccCCCEEEEEEcCC
Confidence 67778888999999999999999884
No 393
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=69.77 E-value=4.5 Score=25.25 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=20.1
Q ss_pred cCCceecCeEeEEEcccCeEEEEeCC
Q psy4383 23 EDGRTVLGQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 23 l~g~~l~g~~i~v~~~rG~afV~F~~ 48 (89)
..|.+..|....-+..||||||+-++
T Consensus 58 ~~g~m~~GtVKwFn~~KGfGFI~~dd 83 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHGFITPAD 83 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEEEEEESS
T ss_pred ccCCccceEEEEEeCCCCeEEeccCC
Confidence 34666777776677799999999876
No 394
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.30 E-value=8.3 Score=21.00 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCceecCeEeEEEcccCeEEEEeCCH
Q psy4383 24 DGRTVLGQTLGISMHKGYAFIQFSNP 49 (89)
Q Consensus 24 ~g~~l~g~~i~v~~~rG~afV~F~~~ 49 (89)
+|...-|.+.+|...++..+|.|+|-
T Consensus 22 DGlfYlGtV~kV~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 22 DGLLYLGTIKKVDSAREVCLVQFEDD 47 (68)
T ss_dssp TSSEEEEEEEEEETTTTEEEEEETTT
T ss_pred CCcEEEeEEEEEecCCcEEEEEEccC
Confidence 67777888889999999999999883
No 395
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=67.57 E-value=3.5 Score=22.80 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=15.5
Q ss_pred eecCeEeEEEcccCeEEEEeCC
Q psy4383 27 TVLGQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 27 ~l~g~~i~v~~~rG~afV~F~~ 48 (89)
...|....-+..||||||+-++
T Consensus 8 ~~~G~Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 8 KVLGTVKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEEEEEEETTTTEEEEEEGG
T ss_pred ccceEEEEEECCCCcEEEecCC
Confidence 3455555556689999999765
No 396
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=67.54 E-value=8.7 Score=20.85 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.4
Q ss_pred CCceecCeEeEEEcccCeEEEEeCC
Q psy4383 24 DGRTVLGQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 24 ~g~~l~g~~i~v~~~rG~afV~F~~ 48 (89)
+|....|.+++|+..+|-.+|.|.|
T Consensus 26 DGl~Y~gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 26 DGLFYLGTIKKINILKQSCFIIFED 50 (66)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETT
T ss_pred cCcEEEeEEEEEccCCcEEEEEEcc
Confidence 6788888899999999999999987
No 397
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=66.54 E-value=9.9 Score=20.10 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.2
Q ss_pred CCceecCeEeEEEcccCeEEEEeCCHH
Q psy4383 24 DGRTVLGQTLGISMHKGYAFIQFSNPH 50 (89)
Q Consensus 24 ~g~~l~g~~i~v~~~rG~afV~F~~~~ 50 (89)
+|...-|.++.|+..++-.+|.|+|-.
T Consensus 16 DG~fYlGtI~~V~~~~~~clV~F~D~s 42 (58)
T 4hcz_A 16 DGLLYLGTIKKVDSAREVCLVQFEDDS 42 (58)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETTSC
T ss_pred CCCEEeEEEEEEecCCCEEEEEEcCCC
Confidence 677888899999999999999998843
No 398
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=65.45 E-value=5.9 Score=22.65 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=24.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCceecCe
Q psy4383 41 YAFIQFSNPHDARSACLGEDGRTVLGQ 67 (89)
Q Consensus 41 ~afV~F~~~~~a~~Ai~~l~g~~l~gr 67 (89)
-|+|.|.+.++...-.+.++|..+.+.
T Consensus 47 RaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 47 RAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp EEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred EEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 399999999999999999999988653
No 399
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=64.78 E-value=6.9 Score=21.39 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=26.4
Q ss_pred cCeEeEEEcccCeEEEEeCCHH-H--HHHHHHhcCCceecCeEEEEEeeeeecc
Q psy4383 29 LGQTLGISMHKGYAFIQFSNPH-D--ARSACLGEDGRTVLGQTLVSYKLQYYNG 79 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~~-~--a~~Ai~~l~g~~l~gr~i~~~~~~~~~~ 79 (89)
.|....-+..||||||+-++-. + =..||.. +|..-.|..+.....+-.+|
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~dg~~dFvH~s~i~~-~g~l~~G~~V~F~~~~g~kG 56 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDENGDNRYFHVIKVAN-PDLIKKDAAVTFEPTTNNKG 56 (74)
T ss_dssp EEEEEEEETTTTEEEEEESSSCEEEEEGGGBSS-GGGCCTTCEEEEEEEECSSS
T ss_pred ceEEEEEECCCCeEEEecCCCCceEEEHhHccc-CCCCCCCCEEEEEEEeCCCC
Confidence 3444445568999999987521 1 0122321 22445677776554444333
No 400
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=64.36 E-value=7.6 Score=20.55 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=13.3
Q ss_pred CeEeEEEcccCeEEEEeCC
Q psy4383 30 GQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~ 48 (89)
|+....+..||||||+-++
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (66)
T 1c9o_A 4 GKVKWFNNEKGYGFIEVEG 22 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEECCCCeEEEecCC
Confidence 4444455589999998775
No 401
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=61.49 E-value=9.1 Score=20.36 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=13.4
Q ss_pred CeEeEEEcccCeEEEEeCC
Q psy4383 30 GQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~ 48 (89)
|....-+..||||||+-++
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 4 GIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCeEEEecCC
Confidence 4444455689999999765
No 402
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=60.88 E-value=8.8 Score=20.76 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=13.3
Q ss_pred CeEeEEEcccCeEEEEeCC
Q psy4383 30 GQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~ 48 (89)
|.....+..||||||+-++
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 4 GRVKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEEEETTTTEEEEECTT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 4444455589999998765
No 403
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=60.50 E-value=8.4 Score=21.07 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=13.2
Q ss_pred CeEeEEEcccCeEEEEeCC
Q psy4383 30 GQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~ 48 (89)
|....-+..||||||+-++
T Consensus 3 G~Vkwfn~~KGfGFI~~~d 21 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDD 21 (74)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 3333445589999999876
No 404
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=60.19 E-value=8.1 Score=23.63 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCCce
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDGRT 63 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g~~ 63 (89)
-.||-||+++..++...+++...|..
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 58999999999999999999988863
No 405
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=59.88 E-value=9.7 Score=22.11 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=23.9
Q ss_pred EEEEeCCHHHHHHHHHhcCCceecCe
Q psy4383 42 AFIQFSNPHDARSACLGEDGRTVLGQ 67 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l~g~~l~gr 67 (89)
|+|.|.+.++...-.+..+|..+.+.
T Consensus 56 AYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 56 AYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred EEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 99999999999999999999988654
No 406
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=58.89 E-value=5.6 Score=21.83 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=27.3
Q ss_pred cCeEeEEEcccCeEEEEeCCHHHHHHHHHhcCCceecC
Q psy4383 29 LGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 29 ~g~~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
+|+.+.+.--+ .|.+.+|.++|..++..|+....++
T Consensus 26 CG~~~~~~k~r--if~~~~d~~eA~e~~~~lqa~~~G~ 61 (71)
T 1gh9_A 26 CGRTVNVKDRR--IFGRADDFEEASELVRKLQEEKYGS 61 (71)
T ss_dssp TTEEEECCSSS--CBSCCSSHHHHHHHHHHHSSCCCSC
T ss_pred CCCeeeeceEE--EEEecCCHHHHHHHHHHHHhhhcCc
Confidence 56666665444 5677899999999999998776554
No 407
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=57.07 E-value=12 Score=20.10 Aligned_cols=51 Identities=24% Similarity=0.217 Sum_probs=27.4
Q ss_pred ecCeEeEEEcccCeEEEEeCCH-HHH---HHHHHhcCCc--eecCeEEEEEeeeeecc
Q psy4383 28 VLGQTLGISMHKGYAFIQFSNP-HDA---RSACLGEDGR--TVLGQTLVSYKLQYYNG 79 (89)
Q Consensus 28 l~g~~i~v~~~rG~afV~F~~~-~~a---~~Ai~~l~g~--~l~gr~i~~~~~~~~~~ 79 (89)
..|....-+..||||||.-++- ++. ..||. .+|. .-.|..+.....+-.+|
T Consensus 6 ~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~-~~g~~~l~~G~~V~f~~~~~~kG 62 (71)
T 3i2z_B 6 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQ-TNGFKTLAEGQRVEFEITNGAKG 62 (71)
T ss_dssp EEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBC-CSSCCCCCTTCEEEEEEEEETTE
T ss_pred ccEEEEEEECCCCcEEEecCCCCccEEEEhHHcc-cccCcCCCCCCEEEEEEEECCCC
Confidence 4555555566899999998763 221 22333 2232 23566665544443333
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=56.84 E-value=16 Score=21.39 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=24.1
Q ss_pred EeEEEcccCeEEEEeCCHHHHHHHHHhcCC
Q psy4383 32 TLGISMHKGYAFIQFSNPHDARSACLGEDG 61 (89)
Q Consensus 32 ~i~v~~~rG~afV~F~~~~~a~~Ai~~l~g 61 (89)
...++.-.|-|.|+|.+.++..-||+.|-.
T Consensus 39 efycdyidgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 39 EFYCDYIDGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CEEEEECSSCEEEEESSHHHHHHHHHHHEE
T ss_pred eEeeeeecCeeEEEecCChHHHHHHHHHHh
Confidence 334556789999999999999999987743
No 409
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.40 E-value=6.6 Score=21.09 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.6
Q ss_pred CCceecCeEeEEEcccCeEEEEeCCH
Q psy4383 24 DGRTVLGQTLGISMHKGYAFIQFSNP 49 (89)
Q Consensus 24 ~g~~l~g~~i~v~~~rG~afV~F~~~ 49 (89)
+|...-|.+.+|+..++..+|.|+|-
T Consensus 20 DGlfYlgtV~kV~~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 20 DGLYYLGKIKRVSSSKQSCLVTFEDN 45 (63)
T ss_dssp TSCEEEEEECCCCSTTSEEEEEETTS
T ss_pred CCCEEEEEEEEEecCCCEEEEEEccC
Confidence 56777788888888899999999874
No 410
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=55.21 E-value=12 Score=19.73 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=12.3
Q ss_pred EeEEEcccCeEEEEeCC
Q psy4383 32 TLGISMHKGYAFIQFSN 48 (89)
Q Consensus 32 ~i~v~~~rG~afV~F~~ 48 (89)
....+..||||||+-++
T Consensus 5 Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 5 VKWFDSKKGYGFITKDE 21 (66)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEECCCCEEEEecCC
Confidence 33445579999999775
No 411
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=54.60 E-value=13 Score=24.36 Aligned_cols=49 Identities=10% Similarity=0.037 Sum_probs=34.7
Q ss_pred CceecCeEeEEEc-ccCeEEEEeCCHHHHHHHHHhcCCceecCeEEEEEeee
Q psy4383 25 GRTVLGQTLGISM-HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75 (89)
Q Consensus 25 g~~l~g~~i~v~~-~rG~afV~F~~~~~a~~Ai~~l~g~~l~gr~i~~~~~~ 75 (89)
+..+....+.+.- -+||-||+=.+..+..+||+.+.+.-.. .+.+++++
T Consensus 134 ~~~l~I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~--~~~lVPi~ 183 (200)
T 2exu_A 134 KKKLKILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYIS--QKLLIPVQ 183 (200)
T ss_dssp SSCCCCCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTEEEE--EEEECCGG
T ss_pred CCCccEEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhhhcC--CceEecHH
Confidence 4455555555533 4899999999999999999999886433 33455543
No 412
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=54.15 E-value=12 Score=21.13 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=13.8
Q ss_pred ceecCeEeEEEcccCeEEEEeCC
Q psy4383 26 RTVLGQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 26 ~~l~g~~i~v~~~rG~afV~F~~ 48 (89)
....|+... +.+|||||+-++
T Consensus 17 ~~~~G~Vk~--f~kGfGFI~~dd 37 (88)
T 2yty_A 17 KRLLGYVAT--LKDNFGFIETAN 37 (88)
T ss_dssp CCEEEEEEE--ECSSEEEEECSS
T ss_pred CceeEEEEE--EECCccEEecCC
Confidence 344554433 359999999876
No 413
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=54.10 E-value=11 Score=22.03 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.0
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcC
Q psy4383 38 HKGYAFIQFSNPHDARSACLGED 60 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~ 60 (89)
..--|||.|.+++.|..|+..++
T Consensus 48 dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 48 DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp ETTEEEEECSCHHHHHHHHHHHH
T ss_pred cCCeEEEEecCHHHHHHHHHhcc
Confidence 56679999999999999999763
No 414
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=51.75 E-value=8.9 Score=21.18 Aligned_cols=14 Identities=14% Similarity=0.491 Sum_probs=11.1
Q ss_pred EcccCeEEEEeCCH
Q psy4383 36 SMHKGYAFIQFSNP 49 (89)
Q Consensus 36 ~~~rG~afV~F~~~ 49 (89)
.+.||||||+-++-
T Consensus 15 ~~~KGfGFI~~ddg 28 (79)
T 2ytv_A 15 CVKDQFGFINYEVG 28 (79)
T ss_dssp ECCSSEEEESCCCS
T ss_pred EecccceeEeCCCC
Confidence 35799999998753
No 415
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=49.89 E-value=15 Score=21.52 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=28.9
Q ss_pred ceecCeEeEEEc-ccCeEEEEeCCHHHHHHHHHhcCCcee
Q psy4383 26 RTVLGQTLGISM-HKGYAFIQFSNPHDARSACLGEDGRTV 64 (89)
Q Consensus 26 ~~l~g~~i~v~~-~rG~afV~F~~~~~a~~Ai~~l~g~~l 64 (89)
..+.-..+.+.- -+||-||+=.+..+..+||..+.+...
T Consensus 37 ~~l~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~~ 76 (106)
T 3h7h_B 37 TPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRL 76 (106)
T ss_dssp SCCCCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGGG
T ss_pred CCcceEEEEecCCCceEEEEEeCCHHHHHHHHhcccceec
Confidence 344444554433 599999999999999999988876654
No 416
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=48.17 E-value=18 Score=20.62 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=15.2
Q ss_pred eecCeEeEEEcccCeEEEEeCC
Q psy4383 27 TVLGQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 27 ~l~g~~i~v~~~rG~afV~F~~ 48 (89)
+..|+....+..+|||||.-++
T Consensus 16 ~~~G~Vk~fn~~kGfGFI~~~~ 37 (101)
T 2bh8_A 16 KMTGIVKWFNADKGFGFITPDD 37 (101)
T ss_dssp CEEEEEEEEEGGGTEEEEEESS
T ss_pred cceeEEEEEECCCCCEEEEeCC
Confidence 3455555556679999998764
No 417
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=40.25 E-value=20 Score=18.09 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.9
Q ss_pred eCCHHHHHHHHHhcCC
Q psy4383 46 FSNPHDARSACLGEDG 61 (89)
Q Consensus 46 F~~~~~a~~Ai~~l~g 61 (89)
|.+++.+..||...+|
T Consensus 23 F~~~~~~~~AL~~t~g 38 (53)
T 2knz_A 23 FINREANLQALIATGG 38 (53)
T ss_dssp CCCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhCC
Confidence 6788999999998887
No 418
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=40.16 E-value=19 Score=20.95 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=22.5
Q ss_pred cccCeEEEEeCCHH-----HHHHHHHhcCCce
Q psy4383 37 MHKGYAFIQFSNPH-----DARSACLGEDGRT 63 (89)
Q Consensus 37 ~~rG~afV~F~~~~-----~a~~Ai~~l~g~~ 63 (89)
+-.||-||+++..+ +....|....|..
T Consensus 60 lfPGYVFV~~~~~~~~~~~~~~~~vr~t~gV~ 91 (119)
T 1nz8_A 60 LFPGYLFIQMDLGDEEEPNEAWEVVRGTPGIT 91 (119)
T ss_dssp SSTTEEEEEECCCSSSSCCHHHHHHHHSTTCC
T ss_pred CCCCEEEEEeeccccccchhHHHHHHcCCCce
Confidence 35799999999887 8889999888853
No 419
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=40.01 E-value=25 Score=21.55 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=14.9
Q ss_pred ecCeEeEEEcccCeEEEEeC
Q psy4383 28 VLGQTLGISMHKGYAFIQFS 47 (89)
Q Consensus 28 l~g~~i~v~~~rG~afV~F~ 47 (89)
..|.+...+..+|||||..+
T Consensus 10 ~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 10 GAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp EEEEEEEEETTTTEEEEEEE
T ss_pred ceeEEEEEECCCCeeEEeeC
Confidence 45555556668999999986
No 420
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=38.12 E-value=14 Score=21.03 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.5
Q ss_pred EcccCeEEEEe
Q psy4383 36 SMHKGYAFIQF 46 (89)
Q Consensus 36 ~~~rG~afV~F 46 (89)
+..||||||+-
T Consensus 17 n~~KGfGFI~~ 27 (90)
T 3ulj_A 17 NVRMGFGFISM 27 (90)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCeEEeEe
Confidence 34799999963
No 421
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=37.84 E-value=13 Score=21.07 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=10.0
Q ss_pred cccCeEEEEeCC
Q psy4383 37 MHKGYAFIQFSN 48 (89)
Q Consensus 37 ~~rG~afV~F~~ 48 (89)
+.||||||+-++
T Consensus 16 f~KGfGFI~~~~ 27 (89)
T 1x65_A 16 MRDGFGFIKCVD 27 (89)
T ss_dssp CCTTBCEEEESS
T ss_pred EeCCcceeecCC
Confidence 469999999865
No 422
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=42.79 E-value=7.4 Score=20.91 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=12.6
Q ss_pred CeEeEEEcccCeEEEEeCC
Q psy4383 30 GQTLGISMHKGYAFIQFSN 48 (89)
Q Consensus 30 g~~i~v~~~rG~afV~F~~ 48 (89)
|....-+..||||||+-++
T Consensus 7 G~Vk~fn~~kGfGFI~~~~ 25 (70)
T 2lss_A 7 GKVKWYNSTKNFGFIEQDN 25 (70)
Confidence 3333334479999998776
No 423
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=36.53 E-value=18 Score=20.38 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=9.9
Q ss_pred cccCeEEEEeCC
Q psy4383 37 MHKGYAFIQFSN 48 (89)
Q Consensus 37 ~~rG~afV~F~~ 48 (89)
+.||||||+-++
T Consensus 26 f~KGfGFI~~dd 37 (89)
T 1wfq_A 26 LLTSYGFIQCSE 37 (89)
T ss_dssp ECSSEEEEEETT
T ss_pred EeCCeeEEecCC
Confidence 359999999876
No 424
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=35.33 E-value=18 Score=20.71 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=9.6
Q ss_pred ccCeEEEEeCC
Q psy4383 38 HKGYAFIQFSN 48 (89)
Q Consensus 38 ~rG~afV~F~~ 48 (89)
.||||||+-++
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 89999998765
No 425
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=35.29 E-value=10 Score=22.21 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=23.2
Q ss_pred EeEEEc-ccCeEEEEeCCHHHHHHHHHhcC
Q psy4383 32 TLGISM-HKGYAFIQFSNPHDARSACLGED 60 (89)
Q Consensus 32 ~i~v~~-~rG~afV~F~~~~~a~~Ai~~l~ 60 (89)
-+.|+| ..--|||.|.+++.|..|+..++
T Consensus 31 gv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 31 NIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred CEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 445544 56779999999999999999764
No 426
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=34.73 E-value=28 Score=17.45 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.7
Q ss_pred eCCHHHHHHHHHhcCC
Q psy4383 46 FSNPHDARSACLGEDG 61 (89)
Q Consensus 46 F~~~~~a~~Ai~~l~g 61 (89)
|.+++.+.+||...+|
T Consensus 24 F~~~~~~~~AL~~t~g 39 (52)
T 2jy5_A 24 FLNREANLQALIATGG 39 (52)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCC
Confidence 7788899999998877
No 427
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=32.98 E-value=32 Score=16.83 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=13.1
Q ss_pred eCCHHHHHHHHHhcCCc
Q psy4383 46 FSNPHDARSACLGEDGR 62 (89)
Q Consensus 46 F~~~~~a~~Ai~~l~g~ 62 (89)
|.+++.+..||...+|-
T Consensus 19 F~d~~~~~~AL~~~~gn 35 (46)
T 2bwb_A 19 FFDFDRNVAALRRSGGS 35 (46)
T ss_dssp CCCHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHhCCC
Confidence 57778888998877763
No 428
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.18 E-value=36 Score=17.26 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=13.3
Q ss_pred eCCHHHHHHHHHhcCCc
Q psy4383 46 FSNPHDARSACLGEDGR 62 (89)
Q Consensus 46 F~~~~~a~~Ai~~l~g~ 62 (89)
|.+++.+.+||...+|-
T Consensus 21 F~d~~~n~~AL~~~~Gd 37 (54)
T 2dah_A 21 FLNREANLQALIATGGD 37 (54)
T ss_dssp CCCHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHcCCC
Confidence 77777888888877764
No 429
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=30.15 E-value=29 Score=18.19 Aligned_cols=16 Identities=25% Similarity=0.098 Sum_probs=12.5
Q ss_pred EEEEeCCHHHHHHHHH
Q psy4383 42 AFIQFSNPHDARSACL 57 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~ 57 (89)
-+=+|+++|+|..|-.
T Consensus 29 ~LGtf~T~eeAA~AyD 44 (63)
T 1gcc_A 29 WLGTFETAEDAALAYD 44 (63)
T ss_dssp EEEEESSHHHHHHHHH
T ss_pred EeeeCCCHHHHHHHHH
Confidence 4458999999998753
No 430
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=30.05 E-value=36 Score=17.61 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=13.4
Q ss_pred eCCHHHHHHHHHhcCCc
Q psy4383 46 FSNPHDARSACLGEDGR 62 (89)
Q Consensus 46 F~~~~~a~~Ai~~l~g~ 62 (89)
|.+++.+.+||...+|-
T Consensus 29 F~d~~~~~~AL~~~~gn 45 (58)
T 1wr1_B 29 FFDFDRNVAALRRSGGS 45 (58)
T ss_dssp CCCHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHhCCC
Confidence 57788889999877763
No 431
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=29.91 E-value=59 Score=16.38 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=15.5
Q ss_pred CeEEEEeCCHHHHHHHHHh
Q psy4383 40 GYAFIQFSNPHDARSACLG 58 (89)
Q Consensus 40 G~afV~F~~~~~a~~Ai~~ 58 (89)
|--|=.|.+.++|++.|..
T Consensus 32 ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 32 AARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp TCEEEEESSHHHHHHHHHC
T ss_pred CCccCCCCCHHHHHHHHHh
Confidence 4467789999999999874
No 432
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=34.57 E-value=12 Score=21.86 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=17.3
Q ss_pred EeCCHHHHHHHHHhcCCceecC
Q psy4383 45 QFSNPHDARSACLGEDGRTVLG 66 (89)
Q Consensus 45 ~F~~~~~a~~Ai~~l~g~~l~g 66 (89)
.|.+.++|.+|+..|....-..
T Consensus 70 ~Y~s~~~A~~A~~~LP~~l~~~ 91 (106)
T 2lfv_A 70 VYASKEEAKKAVSTLPADVQAK 91 (106)
Confidence 7899999999999887654433
No 433
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=27.96 E-value=71 Score=16.68 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=33.1
Q ss_pred EecCHHHHHHHHhhcCCceecCeEeEEEcccCeEE---EEeCCHHHHHHHHHhcCCcee
Q psy4383 9 QFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAF---IQFSNPHDARSACLGEDGRTV 64 (89)
Q Consensus 9 ~f~~~~~a~~Ai~~l~g~~l~g~~i~v~~~rG~af---V~F~~~~~a~~Ai~~l~g~~l 64 (89)
.|.+.+.|+....+|... |.+..+....++=- =-|.+.++|++++..|...-+
T Consensus 16 af~~~~~A~~~~~~L~~~---g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 16 AFKVKANADSLASNAEAK---GFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp EESCHHHHHHHHHHHHHH---TCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred EcCCHHHHHHHHHHHHhC---CCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 488999999888777433 22222222222211 257899999999988875434
No 434
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=31.77 E-value=14 Score=21.74 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.8
Q ss_pred cccCeEEEEeCCHHHHHHHHHhcCCc
Q psy4383 37 MHKGYAFIQFSNPHDARSACLGEDGR 62 (89)
Q Consensus 37 ~~rG~afV~F~~~~~a~~Ai~~l~g~ 62 (89)
...|-|.|+|.+.++..-||+.|-..
T Consensus 75 lkegqamirfqnsdeqrlaiqkllnh 100 (137)
T 2lsl_A 75 LKEGQAMIRFQNSDEQRLAIQKLLNH 100 (137)
Confidence 36799999999999999999876443
No 435
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=25.25 E-value=43 Score=19.39 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=11.5
Q ss_pred CHHHHHHHHHhcCCc
Q psy4383 48 NPHDARSACLGEDGR 62 (89)
Q Consensus 48 ~~~~a~~Ai~~l~g~ 62 (89)
+++.|.+||...||-
T Consensus 79 s~~~A~~aL~~~~gD 93 (102)
T 1tr8_A 79 SREDATRALQETGGD 93 (102)
T ss_dssp CHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHcCCC
Confidence 577888888877774
No 436
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=24.16 E-value=56 Score=14.79 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=10.6
Q ss_pred CHHHHHHHHHhcCC
Q psy4383 48 NPHDARSACLGEDG 61 (89)
Q Consensus 48 ~~~~a~~Ai~~l~g 61 (89)
+++.|..||...+|
T Consensus 17 ~~~~a~~AL~~~~~ 30 (40)
T 1z96_A 17 DPLEAAQALDAANG 30 (40)
T ss_dssp CHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHcCC
Confidence 56788888887765
No 437
>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A
Probab=22.29 E-value=71 Score=18.70 Aligned_cols=18 Identities=0% Similarity=0.169 Sum_probs=15.7
Q ss_pred EEEEeCCHHHHHHHHHhc
Q psy4383 42 AFIQFSNPHDARSACLGE 59 (89)
Q Consensus 42 afV~F~~~~~a~~Ai~~l 59 (89)
.|..|++.++|.++|+.+
T Consensus 18 Ty~DyeSv~~~megiC~i 35 (104)
T 2nml_A 18 TYADYESVNECMEGVCKM 35 (104)
T ss_dssp EEEEESSHHHHHHHHHHH
T ss_pred eeeccccHHHHHHHHHHH
Confidence 899999999999988754
No 438
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=21.52 E-value=61 Score=20.46 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=18.9
Q ss_pred ccC-eEEEEeCCHHHHHHHHHhcC
Q psy4383 38 HKG-YAFIQFSNPHDARSACLGED 60 (89)
Q Consensus 38 ~rG-~afV~F~~~~~a~~Ai~~l~ 60 (89)
..| ..++-|.+.++|++-.++-.
T Consensus 108 pMG~~~l~pFa~k~dAe~Fa~~~G 131 (175)
T 2hpu_A 108 GMGAPEAVPFSSRDEAAAFVLAEG 131 (175)
T ss_dssp SSSCCCEEEESCHHHHHHHHHHTE
T ss_pred CCCCCcccCcCCHHHHHHHHHHcC
Confidence 346 78999999999999987643
No 439
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.07 E-value=69 Score=17.14 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.4
Q ss_pred eCCHHHHHHHHHhcCCc
Q psy4383 46 FSNPHDARSACLGEDGR 62 (89)
Q Consensus 46 F~~~~~a~~Ai~~l~g~ 62 (89)
|.+++...+||...+|-
T Consensus 31 F~d~~an~~AL~at~Gn 47 (67)
T 2dna_A 31 FVNYNANLQALIATDGD 47 (67)
T ss_dssp CCCHHHHHHHHHHTTSC
T ss_pred CCcHHHHHHHHHHcCCC
Confidence 57888888999887774
No 440
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=20.82 E-value=1e+02 Score=16.65 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=17.3
Q ss_pred CCceecCeEeEEEcccCeEEEEeCCHH
Q psy4383 24 DGRTVLGQTLGISMHKGYAFIQFSNPH 50 (89)
Q Consensus 24 ~g~~l~g~~i~v~~~rG~afV~F~~~~ 50 (89)
+|...-|.+ |...+.-.+|+|+|-.
T Consensus 28 DG~fYLGtI--Vd~~~~~ClV~FeD~S 52 (69)
T 2xk0_A 28 DGRFYLGTI--IDQTSDQYLIRFDDQS 52 (69)
T ss_dssp TSCEEEEEE--EEECSSCEEEEETTCC
T ss_pred CCCEEEEEE--EecCCceEEEEecCCc
Confidence 455555555 5567888999998843
No 441
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=20.74 E-value=65 Score=15.05 Aligned_cols=14 Identities=14% Similarity=-0.016 Sum_probs=10.8
Q ss_pred CHHHHHHHHHhcCC
Q psy4383 48 NPHDARSACLGEDG 61 (89)
Q Consensus 48 ~~~~a~~Ai~~l~g 61 (89)
+++.|.+||...++
T Consensus 17 ~~~~a~~AL~~~~~ 30 (43)
T 2g3q_A 17 TEEEAHNALEKCNW 30 (43)
T ss_dssp CHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhCc
Confidence 46788888887765
No 442
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=20.67 E-value=70 Score=16.37 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=11.5
Q ss_pred CHHHHHHHHHhcCCc
Q psy4383 48 NPHDARSACLGEDGR 62 (89)
Q Consensus 48 ~~~~a~~Ai~~l~g~ 62 (89)
++++|.+||..-+|-
T Consensus 24 sr~~ai~AL~~a~nn 38 (52)
T 2ooa_A 24 AFEEVKRALEIAQNN 38 (52)
T ss_dssp CHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHhCCC
Confidence 678888888877663
No 443
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=20.15 E-value=48 Score=23.82 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=21.5
Q ss_pred ccCeEEEEeCCHHHHHHHHHhcCC
Q psy4383 38 HKGYAFIQFSNPHDARSACLGEDG 61 (89)
Q Consensus 38 ~rG~afV~F~~~~~a~~Ai~~l~g 61 (89)
+.|.+||-..++++|+++++.|+.
T Consensus 338 NmGiGmVlvV~~e~a~~vl~~L~~ 361 (394)
T 3kiz_A 338 NMGHRLEIYTDAAHAEGMIAIAKK 361 (394)
T ss_dssp CTTEEEEEEECHHHHHHHHHHHHH
T ss_pred CCcccEEEEECHHHHHHHHHHHHH
Confidence 889999999999999999988753
Done!