RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4383
         (89 letters)



>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 99

 Score = 40.7 bits (95), Expect = 1e-06
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 21 LGEDGRTVLGQTLGIS-------MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73
          + ED R    +   I           G A + F +P +A       DGR   G+ +    
Sbjct: 32 IREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQI---T 88

Query: 74 LQYYNG 79
           Q ++G
Sbjct: 89 AQAWDG 94



 Score = 39.5 bits (92), Expect = 3e-06
 Identities = 10/40 (25%), Positives = 15/40 (37%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKG 40
             G A + F +P +A       DGR   G+ +      G
Sbjct: 55 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 94


>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 40.8 bits (95), Expect = 1e-06
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39
            +G A++ + +  DA++AC    G  V  + L +  + 
Sbjct: 44 ETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYN 82



 Score = 39.2 bits (91), Expect = 5e-06
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL-VSY 72
            +G A++ + +  DA++AC    G  V  + L V Y
Sbjct: 44 ETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 80


>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
          C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 36.8 bits (85), Expect = 3e-05
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 30 GQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
          G+ +G S+HKG+AF+Q+ N  +AR+A  GEDGR + GQ L
Sbjct: 41 GKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVL 80



 Score = 34.8 bits (80), Expect = 2e-04
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
          +HKG+AF+Q+ N  +AR+A  GEDGR + GQ L I++
Sbjct: 48 VHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINL 84


>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 32.3 bits (73), Expect = 0.002
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 10/55 (18%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSA 55
          + KGYAF ++ + +    A  G +G  +  + L          +Q ++   A++A
Sbjct: 41 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL---------LVQRASV-GAKNA 85



 Score = 31.9 bits (72), Expect = 0.002
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
          + KGYAF ++ + +    A  G +G  +  + L
Sbjct: 41 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 73


>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 104

 Score = 32.1 bits (72), Expect = 0.003
 Identities = 12/41 (29%), Positives = 14/41 (34%)

Query: 35 ISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYKLQ 75
                   I FSNP  A  A L       LG+ +  Y  Q
Sbjct: 42 YFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82



 Score = 31.3 bits (70), Expect = 0.004
 Identities = 10/39 (25%), Positives = 14/39 (35%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHK 39
                 I FSNP  A  A L       LG+ + +   +
Sbjct: 44 KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82


>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 31.1 bits (70), Expect = 0.004
 Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 3/31 (9%)

Query: 1  MHKGYAFIQFSNPHDARSACLGE---DGRTV 28
            KG+ F++F+               DGR  
Sbjct: 48 HSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 78



 Score = 31.1 bits (70), Expect = 0.004
 Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 3/31 (9%)

Query: 37 MHKGYAFIQFSNPHDARSACLGE---DGRTV 64
            KG+ F++F+               DGR  
Sbjct: 48 HSKGFGFVRFTEYETQVKVMSQRHMIDGRWC 78


>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 30.9 bits (69), Expect = 0.006
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 2  HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGY 41
           K +AF++F +  +   A +  DG    GQ+L I     Y
Sbjct: 47 DKNFAFLEFRSVDETTQA-MAFDGIIFQGQSLKIRRPHDY 85



 Score = 26.6 bits (58), Expect = 0.23
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
           K +AF++F +  +   A +  DG    GQ+L
Sbjct: 47 DKNFAFLEFRSVDETTQA-MAFDGIIFQGQSL 77


>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
          ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 103

 Score = 30.8 bits (69), Expect = 0.006
 Identities = 6/33 (18%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
            +G+ F+ FS+  +  +A +     ++ G+ +
Sbjct: 60 RSRGFGFVTFSSMAEVDAA-MAARPHSIDGRVV 91



 Score = 30.8 bits (69), Expect = 0.006
 Identities = 6/33 (18%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
            +G+ F+ FS+  +  +A +     ++ G+ +
Sbjct: 60 RSRGFGFVTFSSMAEVDAA-MAARPHSIDGRVV 91


>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 80

 Score = 30.7 bits (69), Expect = 0.006
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL-VSY 72
             GYA++ F  P DA  A    +   + G+ + + +
Sbjct: 40 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 76



 Score = 30.3 bits (68), Expect = 0.007
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGIS 36
             GYA++ F  P DA  A    +   + G+ + I 
Sbjct: 40 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 75


>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
          Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 94

 Score = 29.9 bits (67), Expect = 0.012
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 1  MHKGYAFIQFSNPHDARSACLG-EDGRTVLGQTLGISM 37
           H+G+ F+ F    DA+ A         + G+ L +  
Sbjct: 49 AHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 86



 Score = 29.9 bits (67), Expect = 0.013
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 37 MHKGYAFIQFSNPHDARSACLG-EDGRTVLGQTLV 70
           H+G+ F+ F    DA+ A         + G+ LV
Sbjct: 49 AHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 83


>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
          melanogaster [TaxId: 7227]}
          Length = 85

 Score = 29.5 bits (66), Expect = 0.014
 Identities = 6/32 (18%), Positives = 15/32 (46%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQT 32
            +G AF++++   +A+ A    +     G +
Sbjct: 46 RPRGVAFVRYNKREEAQEAISALNNVIPEGGS 77



 Score = 29.5 bits (66), Expect = 0.014
 Identities = 6/32 (18%), Positives = 15/32 (46%)

Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQT 68
            +G AF++++   +A+ A    +     G +
Sbjct: 46 RPRGVAFVRYNKREEAQEAISALNNVIPEGGS 77


>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 183

 Score = 30.4 bits (67), Expect = 0.020
 Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 1   MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
             +G+AF+ F +        + +   TV G   
Sbjct: 137 KKRGFAFVTFDDHDSVDKI-VIQKYHTVNGHNC 168



 Score = 30.4 bits (67), Expect = 0.020
 Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 37  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
             +G+AF+ F +        + +   TV G   
Sbjct: 137 KKRGFAFVTFDDHDSVDKI-VIQKYHTVNGHNC 168


>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 108

 Score = 29.6 bits (66), Expect = 0.021
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHD 51
           ++  A +Q+++P  A+ A L  DG+ +      +        I FS    
Sbjct: 43 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL-------RIDFSKLTS 86



 Score = 27.7 bits (61), Expect = 0.11
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 27 TVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTV 64
          TVL        ++  A +Q+++P  A+ A L  DG+ +
Sbjct: 33 TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 70


>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 75

 Score = 28.8 bits (64), Expect = 0.025
 Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 9/60 (15%)

Query: 10 FSNPHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
          FS   +     L  D  T           +G+ F+ F          + +    + G+ +
Sbjct: 20 FSKFGEVVDCTLKLDPITG--------RSRGFGFVLFKESESVD-KVMDQKEHKLNGKVI 70



 Score = 28.0 bits (62), Expect = 0.060
 Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 1/33 (3%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
            +G+ F+ F          + +    + G+ +
Sbjct: 39 RSRGFGFVLFKESESVD-KVMDQKEHKLNGKVI 70


>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 77

 Score = 28.0 bits (62), Expect = 0.051
 Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
            +G+ F+ F +        L +    +  +T+
Sbjct: 40 RSRGFGFVTFMDQAGVD-KVLAQSRHELDSKTI 71



 Score = 28.0 bits (62), Expect = 0.051
 Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
            +G+ F+ F +        L +    +  +T+
Sbjct: 40 RSRGFGFVTFMDQAGVD-KVLAQSRHELDSKTI 71


>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 86

 Score = 28.1 bits (62), Expect = 0.058
 Identities = 7/37 (18%), Positives = 18/37 (48%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGISM 37
          M  G A + F +  +A +A +  + R +  + + + +
Sbjct: 49 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 85



 Score = 26.2 bits (57), Expect = 0.30
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
          M  G A + F +  +A +A +  + R +  + +
Sbjct: 49 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 81


>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 85

 Score = 28.1 bits (62), Expect = 0.063
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLGI 35
          + +G  FI+F    +A  A  G +G+   G T  I
Sbjct: 46 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 80



 Score = 26.9 bits (59), Expect = 0.16
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQT 68
          + +G  FI+F    +A  A  G +G+   G T
Sbjct: 46 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 77


>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 96

 Score = 28.1 bits (62), Expect = 0.063
 Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 1  MHKGYAFIQFSNPHDARSAC--LGEDGRTVLGQTLGISMHK 39
           ++G+AF+++ +   A  A   L      + G  + +   +
Sbjct: 43 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 83



 Score = 27.7 bits (61), Expect = 0.078
 Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 37 MHKGYAFIQFSNPHDARSAC--LGEDGRTVLGQTL-VSY 72
           ++G+AF+++ +   A  A   L      + G  + V +
Sbjct: 43 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW 81


>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
          ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 28.1 bits (62), Expect = 0.065
 Identities = 7/43 (16%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVL-GQTLGISMHKGYA 42
           +K Y+F ++    +++ A +  +G+ V+      I+++  + 
Sbjct: 54 PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96



 Score = 25.8 bits (56), Expect = 0.45
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 37  MHKGYAFIQFSNPHDARSACLGEDGRTVL---GQTLVSY-----KLQY 76
            +K Y+F ++    +++ A +  +G+ V+   GQ +  Y     K+Q+
Sbjct: 54  PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 101


>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
          UP1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 84

 Score = 27.3 bits (60), Expect = 0.12
 Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 1  MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 33
            +G+ F+ ++   +   A +      V G+ +
Sbjct: 46 RSRGFGFVTYATVEEVD-AAMNARPHKVDGRVV 77



 Score = 27.3 bits (60), Expect = 0.12
 Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 37 MHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
            +G+ F+ ++   +   A +      V G+ +
Sbjct: 46 RSRGFGFVTYATVEEVD-AAMNARPHKVDGRVV 77


>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 75

 Score = 26.5 bits (58), Expect = 0.20
 Identities = 4/32 (12%), Positives = 8/32 (25%), Gaps = 4/32 (12%)

Query: 1  MHKGYAFIQFSNPHDARSACLGE----DGRTV 28
            +G+ FI F      +     +         
Sbjct: 39 KRRGFCFITFKEEEPVKKIMEKKYHNVGLSKC 70



 Score = 26.5 bits (58), Expect = 0.20
 Identities = 4/32 (12%), Positives = 8/32 (25%), Gaps = 4/32 (12%)

Query: 37 MHKGYAFIQFSNPHDARSACLGE----DGRTV 64
            +G+ FI F      +     +         
Sbjct: 39 KRRGFCFITFKEEEPVKKIMEKKYHNVGLSKC 70


>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate
           synthase {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 287

 Score = 24.9 bits (54), Expect = 1.7
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 12/59 (20%)

Query: 15  DARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTLVSYK 73
                  G DG+ ++   L   +     F+         +   G  G  V+ +    +K
Sbjct: 216 KKGVPHAGNDGKAIVAAPL---ILDIARFL-------LFAKKKGVKG--VVKEMAFFFK 262


>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 81

 Score = 23.7 bits (51), Expect = 2.2
 Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 38 HKGYAFIQFSNPHDARSACLGEDGRTVLGQTLV 70
             +  I++ +   AR A L +DGR      ++
Sbjct: 38 TGNWMHIRYQSKLQARKA-LSKDGRIFGESIMI 69


>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
          Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 75

 Score = 23.3 bits (49), Expect = 3.0
 Identities = 10/57 (17%), Positives = 20/57 (35%)

Query: 13 PHDARSACLGEDGRTVLGQTLGISMHKGYAFIQFSNPHDARSACLGEDGRTVLGQTL 69
          P D  +  + +       +   +  +KG AF+   N   A +A        +  + L
Sbjct: 7  PGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLREREL 63


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 23.6 bits (51), Expect = 5.0
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 5   YAFIQFSNPHDARSACLGEDGRTVLG 30
           Y F      H A +  +  +G  V G
Sbjct: 397 YRFFLVPGTHVAANPQVDREGHVVPG 422



 Score = 23.6 bits (51), Expect = 5.0
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 41  YAFIQFSNPHDARSACLGEDGRTVLG 66
           Y F      H A +  +  +G  V G
Sbjct: 397 YRFFLVPGTHVAANPQVDREGHVVPG 422


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 330,449
Number of extensions: 12219
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 49
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)