BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4384
(661 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TOJ|A Chain A, Structure Of The Spry Domain Of Human Ash2l
pdb|3TOJ|B Chain B, Structure Of The Spry Domain Of Human Ash2l
Length = 213
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/249 (47%), Positives = 156/249 (62%), Gaps = 38/249 (15%)
Query: 253 GWLYRTLAPSHVLLALHDRAPQLRISEDRLAVTGDKGYCMVRATNYVGHGTWYWEATIEE 312
G LYR VLLALHDRAPQL+IS+DRL V G+KGY MVRA++ V G WY+E T++E
Sbjct: 2 GDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDE 61
Query: 313 MPEGSATRMGWGQEYANLQTPLGYDKFGYSWRSRKGTRFHECRGKHYSEGYSEGDTLGFL 372
MP +A R+GW Q NLQ PLGYDKF YSWRS+KGT+FH+ GKHYS GY +GD LGF
Sbjct: 62 MPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFY 121
Query: 373 IHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEKDKVTEALKRLQTLDQSQIVFYKNGKSQ 432
I+LP +D ++ S+I+FYKNG +Q
Sbjct: 122 INLP----------------------------EDTISGR-------GSSEIIFYKNGVNQ 146
Query: 433 GVAFQDIYAGYYYPCVSLHKNCTVSVNFGPHFKHALPTEEFPNVRGMWERSEESICEQSM 492
GVA++DI+ G Y+P +SL+K+CTVS+NFGP FK+ P ++ R M + ++ E ++
Sbjct: 147 GVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKY--PPKDL-TYRPMSDMGWGAVVEHTL 203
Query: 493 ADVLYLTEN 501
ADVLY E
Sbjct: 204 ADVLYHVET 212
>pdb|3S32|A Chain A, Crystal Structure Of Ash2l N-Terminal Domain
Length = 191
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 11/173 (6%)
Query: 4 RNFNLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKKNQAMFPQ 63
R +EL C C WF +PF NY F C C ++G F + QA +
Sbjct: 19 RQLGEVELQCGICTKWFTADTFGIDTSSCLPFXTNYSFHCNVCHHSGNTYFLRKQANLKE 78
Query: 64 MCITAIGNLM-QTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTILRAL 122
C++A+ NL Q+ ++ +P+ FSK+K+IIPFI+ +W+ TT R +W I++
Sbjct: 79 XCLSALANLTWQSRTQDEHPKTXFSKDKDIIPFIDKYWECXTTRQRPGKXTWPNNIVKTX 138
Query: 123 AKETNVLFT----------CNESQEQYGLIDKDLAHIKPNYEQMIKGGHIKVT 165
+KE +V E ++GL+D+DL++I P Y+ + + +
Sbjct: 139 SKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSTS 191
>pdb|3RSN|A Chain A, Crystal Structure Of The N-Terminal Region Of Human Ash2l
Length = 177
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 4 RNFNLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKKNQAMFPQ 63
R +EL C C WF +PF NY F C C ++G F + QA +
Sbjct: 14 RQLGEVELQCGICTKWFTADTFGIDTSSCLPFXTNYSFHCNVCHHSGNTYFLRKQANLKE 73
Query: 64 MCITAIGNLM-QTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTILRAL 122
C++A+ NL Q+ ++ +P+ FSK+K+IIPFI+ +W+ TT R +W I++
Sbjct: 74 XCLSALANLTWQSRTQDEHPKTXFSKDKDIIPFIDKYWECXTTRQRPGKXTWPNNIVKTX 133
Query: 123 AKETNVLFT----------CNESQEQYGLIDKDLAHIKPNYE 154
+KE +V E ++GL+D+DL++I P Y+
Sbjct: 134 SKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYD 175
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 8/147 (5%)
Query: 514 VYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEE 573
V++L P+FRAE S++R HL EF+ +E E A++D + D+ E+ + ++ R LE ++E
Sbjct: 203 VWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMD-LWDIMKVEEELVSYMVQRTLELRKKE 261
Query: 574 LLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKY 633
+ +R ++T L+ + PF R+SY A+ IL G +V L E L +
Sbjct: 262 IEMFRD-----DLTTLKNT-EPPFPRISYDEAIDILQSKGVNVEWGDDLGADEERVLTEE 315
Query: 634 TNNVPIFIINWPKHVKPFYMKRSGEDP 660
+ P F+ +PKH+K FYMK DP
Sbjct: 316 FDR-PFFVYGYPKHIKAFYMKEDPNDP 341
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 15/152 (9%)
Query: 514 VYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEE 573
V+ + ++RAE S++R HLAE+ +EAE F+ + DL IE+ + ++R+L E +
Sbjct: 200 VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFI-TLDDLMEKIEELVCDTVDRLLADEEAK 258
Query: 574 LLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRH------GFDVNPDSGLSKQHE 627
L L +I + PF+RM Y A+ L H G +++ E
Sbjct: 259 KL-------LEHINPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAE 311
Query: 628 LFLVKYTNNVPIFIINWPKHVKPFYMKRSGED 659
F+ T N PI + +P +K FYM+R +D
Sbjct: 312 RFMTD-TINKPILLNRFPSEIKAFYMQRDAQD 342
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 76/148 (51%), Gaps = 10/148 (6%)
Query: 514 VYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEE 573
V+ + P +RAE S + HLAEF ++ E+AF D +D+ +E+ + +++ + E +EE
Sbjct: 202 VFEVAPAWRAEESDTPFHLAEFISMDVEMAFADY-NDVMQLLEKILHNIVKTIKEEGKEE 260
Query: 574 LLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKY 633
L K++N +++ P R+ Y+ A+ IL G+++ + L +
Sbjct: 261 L----KILNYEP-PEVKI----PIKRLKYTEAIEILRSKGYNIKFGDDIGTPELRILNEE 311
Query: 634 TNNVPIFIINWPKHVKPFYMKRSGEDPD 661
FI++WP +PFY K E+P+
Sbjct: 312 LKEDLYFIVDWPSDARPFYTKSKSENPE 339
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 15/152 (9%)
Query: 514 VYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEE 573
V+ + ++RAE S++R HLAE+ +EAE F+ + DL IE+ + ++R+L E +
Sbjct: 202 VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFI-TLDDLMEKIEELVCDTVDRLLADEEAK 260
Query: 574 LLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRH------GFDVNPDSGLSKQHE 627
L L +I + PF+RM Y A+ L H G +++ E
Sbjct: 261 KL-------LEHINPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAE 313
Query: 628 LFLVKYTNNVPIFIINWPKHVKPFYMKRSGED 659
F+ T N PI + +P +K FYM+R +D
Sbjct: 314 RFMTD-TINKPILLNRFPSEIKAFYMQRDAKD 344
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Query: 514 VYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEE 573
V+ + P FRAENS +R HL EF ++ E+ ++N H+ + +E+ + + + + +E
Sbjct: 313 VFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDE 372
Query: 574 LLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELF---L 630
L RK ++ PF+R++Y A+ +L G + + E+ L
Sbjct: 373 LKVIRKQYPFEDLI------YRPFLRLTYKEAIEMLRASGETIGDYDDFTTPQEVKLGEL 426
Query: 631 VKYTNNVPIFIIN-WPKHVKPFYMKRSGEDPD 661
+K N +I++ +P ++PFY +DP+
Sbjct: 427 IKAKYNTDFYILDKFPAAIRPFYTMPDIDDPN 458
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 18/153 (11%)
Query: 515 YTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEEL 574
+ + ++RAE S++ HLAE+ +EAEL F+ + DL N +E + +V++ V+ H +++
Sbjct: 225 FCMLSSYRAEQSRTVRHLAEYLHLEAELPFI-SFEDLLNHLEDLVCTVIDNVMAVHGDKI 283
Query: 575 LTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPD------SGLSKQHEL 628
+ L PF RM+Y+ A+ HG +N D +S++ E
Sbjct: 284 RKMNPHLKLPT---------RPFKRMTYADAIKYCNDHGI-LNKDKPFEYGEDISEKPER 333
Query: 629 FLVKYTNNVPIFIINWPKHVKPFYMKRSGEDPD 661
+ PIF+I++P +K FYM + PD
Sbjct: 334 QMTDEI-GCPIFMIHFPSKMKAFYMSKVPGHPD 365
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 514 VYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEE 573
VY + P FRAE + HL E + I++E+AF+++ ++ + +E+ + +N V E + +E
Sbjct: 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKE 265
Query: 574 LLTYRKLINLANITDLQCIHDN-PFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVK 632
L +I + + PF R+SY A+ IL G ++ + + E L K
Sbjct: 266 L----------DILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGK 315
Query: 633 Y---TNNVPI-FIINWPKHVKPFYMKRSGEDPD 661
Y N P+ F+ +P KPFY+ + P+
Sbjct: 316 YMMENENAPLYFLYQYPSEAKPFYIMKYDNKPE 348
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 514 VYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEE 573
VY + P FRAE + HL E + I++E+AF+++ ++ + +E+ + +N V E + +E
Sbjct: 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKE 265
Query: 574 LLTYRKLINLANITDLQCIHDN-PFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVK 632
L +I + + PF R+SY A+ IL G ++ + + E L K
Sbjct: 266 L----------DILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGK 315
Query: 633 Y---TNNVPI-FIINWPKHVKPFYMKRSGEDPD 661
Y N P+ F+ +P KPFY+ + P+
Sbjct: 316 YMMENENAPLYFLYQYPSEAKPFYIMKYDNKPE 348
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 514 VYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEE 573
VY + P FRAENS + H+ EF ++ E+AF ++ H++ +T+ + + + + + E
Sbjct: 247 VYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHE 306
Query: 574 LLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKY 633
+ RK + + + D +R++Y + +L G ++ LS ++E FL K
Sbjct: 307 IELVRKQY---PVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKL 363
Query: 634 TN---NVPIFIIN-WPKHVKPFY 652
+ +I++ +P ++PFY
Sbjct: 364 VRDKYDTDFYILDKFPLEIRPFY 386
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 514 VYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEE 573
VY + P FRAENS + H+ EF ++ E+AF ++ H++ +T+ + + + + + E
Sbjct: 250 VYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHE 309
Query: 574 LLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKY 633
+ RK + + + D +R++Y + +L G ++ LS ++E FL K
Sbjct: 310 IELVRKQY---PVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKL 366
Query: 634 TN---NVPIFIIN-WPKHVKPFY 652
+ +I++ +P ++PFY
Sbjct: 367 VRDKYDTDFYILDKFPLEIRPFY 389
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 514 VYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEE 573
VY + P +R E + HL E+ ++ E+ F+ + DL E + +L L + +E
Sbjct: 193 VYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDE 252
Query: 574 LLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRH-GFDVNPDSGLSKQHELFLVK 632
I L T D P R++++ A IL G+ V D LS++ E L +
Sbjct: 253 -------IRLLGATWPSFPQDIP--RLTHAEAKRILKEELGYPVGQD--LSEEAERLLGE 301
Query: 633 YTN----NVPIFIINWPKHVKPFY 652
Y + +F+ +P+ V+PFY
Sbjct: 302 YAKERWGSDWLFVTRYPRSVRPFY 325
>pdb|2V24|A Chain A, Structure Of The Human Spry Domain-Containing Socs Box
Protein Ssb-4
Length = 208
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 389 KDKPLVKFKCHLYYEEKDKVTEALKRLQTLDQSQIVFYKNGKSQGVAFQDIYAGYYYPCV 448
K++P V + L +E + ++L + +D+ + F +G+ GVAF+ + YP V
Sbjct: 129 KNQPGVAYPAFLGPDEAFALPDSLLVVLDMDEGTLSFIVDGQYLGVAFRGLKGKKLYPVV 188
Query: 449 S-LHKNCTVSVNF 460
S + +C V++ +
Sbjct: 189 SAVWGHCEVTMRY 201
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 547 NIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAV 606
I D N + ++ KS L ++ E E ++ T+R++ + L CI N S AV
Sbjct: 86 TITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNA----SLFDAV 141
Query: 607 TILTRHGFD----VNPDSGLSKQHELFLV---KYTNNVPIFIINWPKHVKPFYMKRSGED 659
+ L R+ ++P+SG + L+++ + + +FI +P KP +M +S E+
Sbjct: 142 SSLIRNKIHRLPVIDPESG----NTLYILTHKRILKFLKLFITEFP---KPEFMSKSLEE 194
>pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli
Length = 306
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 212 YPLDHPFNKDGYRYILAEPDPHAPFRQEFDESTETAGKPIPGWLYRTLAPSHVLLALHDR 271
YPL+HP GYR + E D ++ + AG P PG L++ L + R
Sbjct: 138 YPLEHPLECYGYR--IEEHDAPGALNA---QALKAAGVP-PGPLFQELKAGKTITLEDGR 191
Query: 272 ---------APQLRISEDRLAVTGDKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMG 322
AP + LA+ GD G C G EAT++ E A G
Sbjct: 192 QINGADYLAAP---VPGKALAIFGDTGPCDAALDLAKGVDVMVHEATLDITMEAKANSRG 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,039,882
Number of Sequences: 62578
Number of extensions: 930195
Number of successful extensions: 2109
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2075
Number of HSP's gapped (non-prelim): 21
length of query: 661
length of database: 14,973,337
effective HSP length: 105
effective length of query: 556
effective length of database: 8,402,647
effective search space: 4671871732
effective search space used: 4671871732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)