Query psy4384
Match_columns 661
No_of_seqs 494 out of 2570
Neff 6.7
Searched_HMMs 29240
Date Sat Aug 17 00:09:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3toj_A SET1/ASH2 histone methy 100.0 4.6E-52 1.6E-56 417.0 18.8 212 253-502 2-213 (213)
2 3rsn_A SET1/ASH2 histone methy 100.0 5.2E-50 1.8E-54 382.5 10.5 155 1-156 11-177 (177)
3 2yyo_A SPRY domain-containing 100.0 3.7E-40 1.3E-44 319.6 16.5 166 267-470 3-171 (171)
4 3nem_A Aspartyl-tRNA synthetas 100.0 2.6E-31 9E-36 291.8 13.3 148 505-661 197-348 (438)
5 3m4p_A Ehasnrs, asparaginyl-tR 100.0 4.4E-30 1.5E-34 283.4 11.0 143 508-661 218-365 (456)
6 3i7f_A Aspartyl-tRNA synthetas 100.0 1E-28 3.5E-33 275.9 13.8 151 505-661 304-458 (548)
7 2xgt_A Asparaginyl-tRNA synthe 99.9 5.5E-28 1.9E-32 265.9 12.4 142 509-661 195-344 (435)
8 1wyd_A Hypothetical aspartyl-t 99.9 9.8E-28 3.4E-32 263.2 12.9 145 507-661 195-339 (429)
9 1x54_A Asparaginyl-tRNA synthe 99.9 8.5E-27 2.9E-31 256.3 11.1 147 507-661 196-342 (434)
10 1eov_A ASPRS, aspartyl-tRNA sy 99.9 2.8E-26 9.4E-31 255.4 13.8 155 504-661 237-395 (487)
11 4ex5_A Lysine--tRNA ligase; st 99.9 1.6E-26 5.4E-31 257.9 7.5 141 506-661 267-433 (529)
12 1n9w_A Aspartyl-tRNA synthetas 99.9 5.3E-26 1.8E-30 249.0 10.4 140 509-658 188-331 (422)
13 3emw_A SPRY domain-containing 99.9 7.9E-25 2.7E-29 219.8 15.7 155 263-460 43-214 (217)
14 3bju_A Lysyl-tRNA synthetase; 99.9 1.1E-25 3.6E-30 252.2 5.0 145 506-661 239-413 (521)
15 2jk9_A SPRY domain-containing 99.9 4E-24 1.4E-28 213.9 15.7 156 262-460 31-205 (212)
16 1e1o_A Lysyl-tRNA synthetase, 99.9 2.9E-25 9.8E-30 247.6 7.1 141 505-661 245-408 (504)
17 3a74_A Lysyl-tRNA synthetase; 99.9 5.1E-25 1.8E-29 245.2 7.3 141 505-661 236-398 (493)
18 3a5y_A GENX, putative lysyl-tR 99.9 1.7E-24 5.7E-29 231.1 8.5 143 504-661 102-251 (345)
19 2afj_A Gene rich cluster, C9 g 99.9 1.1E-22 3.6E-27 205.6 8.7 158 262-462 39-213 (226)
20 1l0w_A Aspartyl-tRNA synthetas 99.8 4.3E-22 1.5E-26 225.5 6.7 82 504-609 205-286 (580)
21 1c0a_A Aspartyl tRNA synthetas 99.8 7E-21 2.4E-25 216.1 7.4 64 504-569 199-262 (585)
22 1nnh_A Asparaginyl-tRNA synthe 99.7 1.2E-18 4.2E-23 182.5 8.3 113 506-655 83-197 (294)
23 4ah6_A Aspartate--tRNA ligase, 99.6 3.4E-16 1.1E-20 177.3 2.2 82 504-610 209-290 (617)
24 2fbe_A Predicted: similar to R 99.0 1E-08 3.6E-13 101.2 15.8 141 263-451 11-171 (201)
25 2wl1_A Pyrin, marenostrin; amy 98.9 1.5E-08 5.2E-13 99.3 14.4 140 263-451 14-174 (191)
26 3uv9_A TRIM5alpha, tripartite 98.9 1.2E-08 4.3E-13 99.5 13.0 143 263-453 13-175 (186)
27 2vok_A 52 kDa RO protein; poly 98.9 2.5E-08 8.7E-13 97.4 14.5 141 263-451 10-170 (188)
28 3kb5_A Tripartite motif-contai 98.6 7.1E-07 2.4E-11 87.5 14.9 141 263-450 13-178 (193)
29 2e63_A KIAA1787 protein; struc 98.2 3.5E-05 1.2E-09 73.9 16.4 135 270-452 12-162 (170)
30 1wep_A PHF8; structural genomi 98.2 2.4E-07 8.1E-12 77.8 0.5 51 3-56 20-70 (79)
31 4b3n_A Maltose-binding peripla 98.0 2.2E-05 7.7E-10 89.5 13.1 143 263-453 411-595 (602)
32 3kqi_A GRC5, PHD finger protei 97.9 4.9E-07 1.7E-11 75.1 -2.7 54 5-61 20-73 (75)
33 1b7y_A Phers, protein (phenyla 97.6 3E-05 1E-09 82.6 5.0 50 512-563 194-245 (350)
34 3o7a_A PHD finger protein 13 v 97.6 4.9E-06 1.7E-10 64.0 -1.0 36 7-47 15-50 (52)
35 3o70_A PHD finger protein 13; 97.5 9.9E-06 3.4E-10 65.9 -0.6 37 7-48 30-66 (68)
36 2rhq_A Phenylalanyl-tRNA synth 97.5 5.7E-05 1.9E-09 78.7 4.8 51 511-563 132-184 (294)
37 1wee_A PHD finger family prote 97.5 1E-05 3.4E-10 66.5 -1.1 40 5-48 26-65 (72)
38 3qtc_A Pyrrolysyl-tRNA synthet 97.5 8.2E-05 2.8E-09 77.3 5.4 53 509-562 153-206 (290)
39 12as_A Asparagine synthetase; 97.3 0.00073 2.5E-08 69.9 9.7 135 504-660 78-219 (330)
40 2yue_A Protein neuralized; str 97.2 0.0038 1.3E-07 59.5 13.5 132 270-459 14-160 (168)
41 1we9_A PHD finger family prote 97.2 3.1E-05 1.1E-09 62.0 -0.9 39 7-48 19-57 (64)
42 1wem_A Death associated transc 97.1 4.2E-05 1.4E-09 63.4 -1.8 41 7-47 27-68 (76)
43 2kgg_A Histone demethylase jar 97.0 6E-05 2E-09 57.9 -1.0 38 6-47 14-52 (52)
44 2rsd_A E3 SUMO-protein ligase 96.9 9.3E-05 3.2E-09 60.1 -1.4 41 7-47 21-63 (68)
45 2lv9_A Histone-lysine N-methyl 96.8 0.00035 1.2E-08 60.8 1.5 38 7-49 39-76 (98)
46 3dsq_A Pyrrolysyl-tRNA synthet 96.6 0.0015 5.1E-08 67.8 5.3 49 513-562 151-202 (288)
47 3kv5_D JMJC domain-containing 96.6 0.00025 8.4E-09 78.8 -0.8 41 5-48 47-87 (488)
48 2ri7_A Nucleosome-remodeling f 96.6 0.00014 4.9E-09 69.7 -2.6 42 4-48 17-58 (174)
49 2xb1_A Pygopus homolog 2, B-ce 96.5 0.00013 4.3E-09 64.5 -3.6 42 7-48 16-60 (105)
50 2vpb_A Hpygo1, pygopus homolog 96.5 0.00029 1E-08 56.6 -1.1 42 6-47 20-64 (65)
51 2k16_A Transcription initiatio 96.4 0.00079 2.7E-08 55.5 1.4 37 7-47 30-66 (75)
52 3pur_A Lysine-specific demethy 96.3 0.00072 2.5E-08 74.8 0.7 49 5-56 53-102 (528)
53 1wew_A DNA-binding family prot 96.3 0.00039 1.3E-08 57.9 -1.2 42 7-48 27-71 (78)
54 3kv4_A PHD finger protein 8; e 96.1 0.00047 1.6E-08 75.5 -2.4 39 7-48 17-55 (447)
55 3lqh_A Histone-lysine N-methyl 96.1 0.00058 2E-08 66.1 -1.6 46 6-51 17-65 (183)
56 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.0 0.0011 3.7E-08 60.2 -0.3 38 9-48 1-43 (140)
57 1wen_A Inhibitor of growth fam 95.9 0.0019 6.4E-08 52.8 1.0 35 8-48 27-64 (71)
58 3l4g_A Phenylalanyl-tRNA synth 95.9 0.0045 1.6E-07 68.7 4.2 49 512-562 348-398 (508)
59 2g6q_A Inhibitor of growth pro 95.7 0.0012 4.2E-08 52.4 -0.9 34 9-48 23-59 (62)
60 1weu_A Inhibitor of growth fam 95.7 0.0021 7E-08 55.1 0.4 35 8-48 47-84 (91)
61 3c6w_A P28ING5, inhibitor of g 95.5 0.0018 6E-08 51.0 -0.7 34 8-47 20-56 (59)
62 4bbq_A Lysine-specific demethy 95.2 0.0059 2E-07 54.4 1.5 48 4-51 69-116 (117)
63 2vnf_A ING 4, P29ING4, inhibit 95.2 0.003 1E-07 49.8 -0.4 34 8-47 21-57 (60)
64 3pco_A Phenylalanyl-tRNA synth 95.1 0.014 4.6E-07 61.5 4.4 48 513-563 186-235 (327)
65 1x4i_A Inhibitor of growth pro 95.0 0.0039 1.3E-07 50.8 -0.0 33 9-47 18-53 (70)
66 2jmi_A Protein YNG1, ING1 homo 94.6 0.0044 1.5E-07 52.9 -0.9 33 9-47 38-74 (90)
67 1f62_A Transcription factor WS 94.2 0.014 4.9E-07 44.1 1.4 37 7-47 12-48 (51)
68 2l5u_A Chromodomain-helicase-D 93.4 0.028 9.5E-07 44.3 1.7 38 8-49 21-58 (61)
69 2du3_A O-phosphoseryl-tRNA syn 92.2 0.08 2.7E-06 59.1 3.9 50 512-562 206-257 (534)
70 2lri_C Autoimmune regulator; Z 92.0 0.055 1.9E-06 43.4 1.6 35 9-48 23-58 (66)
71 2ysm_A Myeloid/lymphoid or mix 91.8 0.031 1.1E-06 49.3 0.0 43 8-52 67-109 (111)
72 1qe0_A Histidyl-tRNA synthetas 90.9 0.13 4.4E-06 55.6 3.7 35 512-547 102-136 (420)
73 2odr_B Phosphoseryl-tRNA synth 90.6 0.16 5.3E-06 57.4 4.1 50 512-562 225-276 (648)
74 2odr_A Phosphoseryl-tRNA synth 90.6 0.16 5.4E-06 57.5 4.1 50 512-562 225-276 (665)
75 1z7m_A ATP phosphoribosyltrans 90.6 0.2 7E-06 52.9 4.9 35 512-547 118-152 (344)
76 2odr_D Phosphoseryl-tRNA synth 90.5 0.16 5.6E-06 57.5 4.1 50 512-562 225-276 (685)
77 2du7_A O-phosphoseryl-tRNA syn 90.4 0.16 5.6E-06 56.6 4.0 50 512-562 218-269 (549)
78 2odr_C Phosphoseryl-tRNA synth 90.3 0.17 5.8E-06 57.5 4.1 50 512-562 225-276 (701)
79 1evl_A Threonyl-tRNA synthetas 89.3 0.19 6.6E-06 54.0 3.5 48 513-562 113-163 (401)
80 1nj1_A PROR, proline-tRNA synt 88.8 0.39 1.3E-05 53.3 5.6 49 513-562 159-210 (501)
81 1nj8_A Proline-tRNA synthetase 88.1 0.52 1.8E-05 51.8 5.9 49 513-562 127-178 (459)
82 2i4l_A Proline-tRNA ligase; al 87.6 0.51 1.8E-05 51.7 5.5 46 512-558 150-197 (458)
83 2cja_A Seryl-tRNA synthetase; 87.5 0.39 1.3E-05 53.6 4.4 52 513-567 346-401 (522)
84 1hc7_A Prolyl-tRNA synthetase; 87.0 0.58 2E-05 51.6 5.5 46 513-559 133-179 (477)
85 2e6r_A Jumonji/ARID domain-con 87.0 0.11 3.8E-06 44.3 -0.2 36 8-47 29-64 (92)
86 2dq0_A Seryl-tRNA synthetase; 85.7 0.48 1.6E-05 52.0 3.9 49 513-563 274-328 (455)
87 2ku3_A Bromodomain-containing 85.7 0.12 4.2E-06 41.9 -0.6 34 7-47 30-64 (71)
88 1nyr_A Threonyl-tRNA synthetas 85.6 0.49 1.7E-05 54.2 4.2 47 513-562 356-406 (645)
89 2puy_A PHD finger protein 21A; 85.5 0.27 9.2E-06 38.3 1.3 35 9-47 16-50 (60)
90 1ati_A Glycyl-tRNA synthetase; 85.5 0.45 1.5E-05 52.9 3.7 47 513-563 211-261 (505)
91 3asl_A E3 ubiquitin-protein li 85.4 0.48 1.6E-05 38.3 2.8 38 7-47 30-67 (70)
92 3ial_A Prolyl-tRNA synthetase; 85.2 0.76 2.6E-05 51.2 5.3 50 513-563 144-195 (518)
93 4hvc_A Bifunctional glutamate/ 85.1 0.77 2.6E-05 51.2 5.3 49 513-562 150-200 (519)
94 1htt_A Histidyl-tRNA synthetas 85.1 0.76 2.6E-05 49.5 5.1 35 512-547 102-136 (423)
95 2l43_A N-teminal domain from h 84.7 0.16 5.4E-06 43.0 -0.4 36 7-48 39-74 (88)
96 1mm2_A MI2-beta; PHD, zinc fin 84.3 0.26 8.8E-06 38.7 0.7 36 9-48 20-55 (61)
97 1xwh_A Autoimmune regulator; P 83.9 0.3 1E-05 38.9 0.9 36 9-48 19-54 (66)
98 3o36_A Transcription intermedi 83.8 0.64 2.2E-05 44.5 3.4 35 10-48 16-50 (184)
99 1vtn_C HNF-3/FORK head DNA-rec 83.8 2.6 8.8E-05 36.6 6.9 69 58-142 5-80 (102)
100 3od1_A ATP phosphoribosyltrans 83.8 0.73 2.5E-05 49.7 4.2 35 512-547 104-138 (400)
101 1h4v_B Histidyl-tRNA synthetas 83.4 0.77 2.6E-05 49.5 4.2 34 512-546 102-135 (421)
102 2yql_A PHD finger protein 21A; 83.3 0.28 9.6E-06 37.7 0.5 35 9-47 20-54 (56)
103 2j3l_A Prolyl-tRNA synthetase; 83.2 1.1 3.8E-05 50.3 5.7 45 513-560 131-179 (572)
104 3rac_A Histidine-tRNA ligase; 83.2 0.84 2.9E-05 48.7 4.4 34 512-546 118-157 (373)
105 1qf6_A THRRS, threonyl-tRNA sy 82.6 0.77 2.6E-05 52.6 4.0 48 513-562 354-404 (642)
106 3u5n_A E3 ubiquitin-protein li 82.6 0.52 1.8E-05 46.1 2.3 38 9-51 18-56 (207)
107 4e51_A Histidine--tRNA ligase; 82.3 0.83 2.8E-05 50.2 4.0 34 512-546 131-164 (467)
108 1wu7_A Histidyl-tRNA synthetas 81.8 0.94 3.2E-05 49.1 4.2 35 512-547 100-134 (434)
109 3mf2_A BLL0957 protein; aminoa 81.3 1.6 5.4E-05 45.9 5.5 50 512-563 169-218 (346)
110 3uh0_A Threonyl-tRNA synthetas 80.5 0.85 2.9E-05 50.1 3.3 49 513-563 151-202 (460)
111 3net_A Histidyl-tRNA synthetas 80.5 0.65 2.2E-05 51.0 2.3 34 512-546 121-154 (465)
112 3lc0_A Histidyl-tRNA synthetas 80.4 0.79 2.7E-05 50.3 3.0 35 512-547 124-158 (456)
113 2e6s_A E3 ubiquitin-protein li 80.3 0.58 2E-05 38.5 1.4 38 7-47 38-75 (77)
114 1usy_A ATP phosphoribosyltrans 79.6 0.9 3.1E-05 46.3 2.9 32 512-547 71-102 (275)
115 2dq3_A Seryl-tRNA synthetase; 78.9 1.5 5.2E-05 47.6 4.6 50 512-563 252-307 (425)
116 3v43_A Histone acetyltransfera 77.5 0.86 2.9E-05 40.1 1.7 37 8-48 75-111 (112)
117 3qne_A Seryl-tRNA synthetase, 77.3 1.7 5.6E-05 48.0 4.3 48 513-562 270-323 (485)
118 3a32_A Probable threonyl-tRNA 76.6 1.4 4.7E-05 48.4 3.5 48 513-562 135-185 (471)
119 1ses_A Seryl-tRNA synthetase; 76.5 2.8 9.6E-05 45.4 5.8 50 513-562 247-302 (421)
120 2ysm_A Myeloid/lymphoid or mix 76.1 0.69 2.4E-05 40.5 0.7 24 8-31 20-43 (111)
121 2a07_F Forkhead box protein P2 75.9 2.6 8.8E-05 36.0 4.2 71 56-142 3-75 (93)
122 3shb_A E3 ubiquitin-protein li 74.9 1.1 3.8E-05 36.9 1.6 37 8-47 39-75 (77)
123 2hfh_A Genesis, HFH-2; HNF-3 h 74.1 3.8 0.00013 35.9 4.9 59 57-131 4-62 (109)
124 2yt5_A Metal-response element- 73.2 0.73 2.5E-05 36.4 0.1 37 8-47 21-59 (66)
125 3cmq_A Phenylalanyl-tRNA synth 72.9 1.9 6.4E-05 46.7 3.2 33 510-543 131-163 (415)
126 3err_A Fusion protein of micro 71.8 3.6 0.00012 46.0 5.3 51 513-563 356-412 (536)
127 3bpy_A FORK head domain, forkh 70.2 10 0.00034 31.7 6.4 62 58-131 7-69 (85)
128 3l2c_A Forkhead box protein O4 67.8 11 0.00037 33.1 6.4 74 57-142 25-104 (110)
129 1wle_A Seryl-tRNA synthetase; 65.9 5.2 0.00018 44.3 4.9 51 513-563 304-359 (501)
130 2zt5_A Glycyl-tRNA synthetase; 65.8 2.4 8.1E-05 49.0 2.3 29 513-543 268-300 (693)
131 2hdc_A Protein (transcription 65.6 6.2 0.00021 33.8 4.3 79 58-160 4-89 (97)
132 2kwj_A Zinc finger protein DPF 64.9 2 6.7E-05 37.9 1.1 36 8-47 71-106 (114)
133 2c6y_A Forkhead box protein K2 63.6 13 0.00044 32.7 6.1 72 55-142 15-93 (111)
134 3g73_A Forkhead box protein M1 63.2 7.3 0.00025 35.7 4.6 74 55-143 17-94 (142)
135 4gne_A Histone-lysine N-methyl 63.2 2.1 7.3E-05 37.4 0.9 21 9-29 26-48 (107)
136 1g5h_A Mitochondrial DNA polym 62.7 5.4 0.00018 43.6 4.3 47 513-563 165-218 (454)
137 2ro1_A Transcription intermedi 62.7 2.5 8.6E-05 40.6 1.5 35 9-48 13-48 (189)
138 3ikl_A DNA polymerase subunit 61.6 3.8 0.00013 44.8 2.8 48 513-562 175-227 (459)
139 3lss_A Seryl-tRNA synthetase; 61.2 5.5 0.00019 43.9 4.0 48 513-562 291-346 (484)
140 2rhq_B Phenylalanyl-tRNA synth 60.4 7.2 0.00025 45.7 5.0 47 513-562 573-632 (795)
141 4g85_A Histidine-tRNA ligase, 59.8 6.7 0.00023 43.4 4.5 33 513-545 159-192 (517)
142 3vbb_A Seryl-tRNA synthetase, 59.1 5.4 0.00019 44.3 3.5 48 513-562 293-348 (522)
143 4g84_A Histidine--tRNA ligase, 58.8 7.6 0.00026 42.0 4.6 33 513-545 106-139 (464)
144 1kq8_A HFH-1, hepatocyte nucle 57.4 9.9 0.00034 32.7 4.1 58 58-131 4-61 (100)
145 3ig2_A Phenylalanyl-tRNA synth 56.4 5.1 0.00017 39.0 2.5 49 513-562 85-151 (213)
146 3coa_C Forkhead box protein O1 56.1 17 0.00059 32.1 5.6 75 57-143 12-92 (117)
147 3v43_A Histone acetyltransfera 54.1 1.2 4.1E-05 39.2 -2.3 21 7-27 23-43 (112)
148 1wil_A KIAA1045 protein; ring 52.1 2.6 8.9E-05 35.1 -0.4 21 7-27 26-46 (89)
149 1wev_A Riken cDNA 1110020M19; 49.8 3.5 0.00012 34.6 0.1 36 8-47 31-70 (88)
150 1e17_A AFX; DNA binding domain 48.0 16 0.00054 33.8 4.1 75 57-143 41-121 (150)
151 3l4g_B Phenylalanyl-tRNA synth 47.9 13 0.00043 42.0 4.3 49 512-561 472-521 (589)
152 3ica_A Phenylalanyl-tRNA synth 47.5 12 0.00042 36.3 3.6 49 513-562 85-151 (213)
153 1fp0_A KAP-1 corepressor; PHD 46.3 4.3 0.00015 34.2 0.1 34 9-47 36-70 (88)
154 1b7y_B Phers, protein (phenyla 31.9 32 0.0011 40.1 4.4 41 513-562 569-620 (785)
155 2l7p_A Histone-lysine N-methyl 25.6 18 0.00061 31.1 0.5 14 7-20 25-38 (100)
156 2kwj_A Zinc finger protein DPF 24.0 20 0.0007 31.2 0.6 22 7-28 20-41 (114)
157 2l9z_A PR domain zinc finger p 22.5 20 0.0007 25.3 0.3 22 8-29 9-30 (39)
No 1
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=100.00 E-value=4.6e-52 Score=417.05 Aligned_cols=212 Identities=55% Similarity=0.995 Sum_probs=188.2
Q ss_pred cccccccCCCceEeCcCCCCCCeEEeCCCcEEEeCCCeeEEEEeEEEeCCeEEEEEEEEeeCCCCcEEEEEeCCCCCCCC
Q psy4384 253 GWLYRTLAPSHVLLALHDRAPQLRISEDRLAVTGDKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYANLQT 332 (661)
Q Consensus 253 ~~~yr~~~~~~v~~s~~dr~~~l~ls~d~l~v~~~~g~~~vRa~~~v~~G~~YfEv~i~~~~~~~~vriG~a~~~~~l~~ 332 (661)
+++||++.+..|+||++|+++.|.||+|+++|++.++|++|||++++++|+|||||+|.+.+.+++++||||++.+++++
T Consensus 2 ~~~~~~~~~~~v~ld~~d~~~~l~ls~d~l~v~~~~~~~~vra~~~v~~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~~ 81 (213)
T 3toj_A 2 GDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQA 81 (213)
T ss_dssp CGGGCCEEECCCCEEEEEECTTSEECTTSSEEECCSSCEEEEESCCBSSEEEEEEEEEEECCTTCEEEEEEECTTSCTTS
T ss_pred ccchhhhcCCeEEechhhCCCCEEEcCCCcEEEeCCceeEEEeCCCccCCeEEEEEEEeecCCCceEEEEeccCCccccc
Confidence 68999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CCCCcCccEEEEcCCCcEEeCCCCcccCCCCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccchhccchhhHHH
Q psy4384 333 PLGYDKFGYSWRSRKGTRFHECRGKHYSEGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEKDKVTEAL 412 (661)
Q Consensus 333 pvG~d~~syg~~~~~G~~~h~s~~~~yg~~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~e~~d~~~~~~ 412 (661)
++|+|.+||||++.+|+++|++++++||++|++||||||+||++..
T Consensus 82 ~~G~d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~---------------------------------- 127 (213)
T 3toj_A 82 PLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPED---------------------------------- 127 (213)
T ss_dssp CTTSSTTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC----------------------------------
T ss_pred CCCCCCCcEEEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCC----------------------------------
Confidence 9999999999999999999999999999999999999999999871
Q ss_pred hhcccCCCcEEEEEECCeeccccceeccCCceEEEEEecCCcEEEEeCCCCCCCCCCCCCCCCccccccccchhhhccch
Q psy4384 413 KRLQTLDQSQIVFYKNGKSQGVAFQDIYAGYYYPCVSLHKNCTVSVNFGPHFKHALPTEEFPNVRGMWERSEESICEQSM 492 (661)
Q Consensus 413 ~~~~~~~~s~I~f~kNG~~~G~AF~~i~~g~yyPavSl~~g~~v~~NFG~~F~~~p~~~~~~~~~p~~~~~~e~~~e~~l 492 (661)
....+++++|+||+||+.+|+||++|..|.||||||++.|++|++|||++|+|||++..| +||++|++++++||++
T Consensus 128 -~~~~~~~g~i~Ft~NG~~lg~aF~~~~~~~lyPavsl~~~~~v~~NFG~~F~~~p~~~~~---~~~~~~~~~~~~~~~~ 203 (213)
T 3toj_A 128 -TISGRGSSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTY---RPMSDMGWGAVVEHTL 203 (213)
T ss_dssp ------CCCEEEEEETTEEEEEEEESCCSSCBEEEEEEESSCEEEEECSSSCSSCCSSCCC---EEGGGGGEEEECCC--
T ss_pred -ccccCCccEEEEEeCCeeeeeeEEcCCCCcEEEEEEcCCCCEEEEECCCCCccCCCCCce---EcHHHhccccccHHHH
Confidence 113445689999999999999999999999999999999999999999999999997668 9999999999999999
Q ss_pred hhhhhhhhcc
Q psy4384 493 ADVLYLTENS 502 (661)
Q Consensus 493 aD~l~lve~~ 502 (661)
||+||+||++
T Consensus 204 ~d~~~~~~~~ 213 (213)
T 3toj_A 204 ADVLYHVETE 213 (213)
T ss_dssp ----------
T ss_pred HHHHHHhhcC
Confidence 9999999863
No 2
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=100.00 E-value=5.2e-50 Score=382.48 Aligned_cols=155 Identities=35% Similarity=0.747 Sum_probs=146.1
Q ss_pred CCCCccccceEecccccchhhHhhhccccCCccccceeEEEEcccCCCCCccceeeccCChHHHHHHHhhhcc-cccccc
Q psy4384 1 GKERNFNLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKKNQAMFPQMCITAIGNLM-QTSIKE 79 (661)
Q Consensus 1 g~~~~~~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~~g~e~~~r~~~~w~~~~~laLynL~-~~~~~~ 79 (661)
|++|+|+++||||++|+||||++|++++.++++|||+||+|+|++||++|.|+|+|++++|+||||||||||+ +.+.++
T Consensus 11 G~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g~E~f~R~~~~w~~v~~laLyNL~~~~~~~~ 90 (177)
T 3rsn_A 11 ENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQD 90 (177)
T ss_dssp CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTSSCEEEECCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCCcceeEeccCCHHHHHHHHHHhhhhhhhhcc
Confidence 8999999999999999999999999999999999999999999999988889999999999999999999999 677777
Q ss_pred CCCccccccccccHHHHHhchhhccCCCccccchHHHHHHHHHhcCCCceEeecCCcc-----------eeeecCCCCCC
Q psy4384 80 GNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTILRALAKETNVLFTCNESQE-----------QYGLIDKDLAH 148 (661)
Q Consensus 80 ~~~k~yF~~~~dI~~fi~~~W~~L~~~~r~~~~~w~~~i~~~L~~~~~~~F~~g~~~~-----------~w~L~~~~~~~ 148 (661)
+++++||++++||||||++||+.|++++|+++++|+++|++||+++ +++|++.++.. .|||.+++|.+
T Consensus 91 ~~~k~yF~~~~dIipfI~~nWe~L~~~~r~~k~~W~~ti~~aLs~~-~~~F~~~~~~~~g~~~~~~~~~~~~l~~~dl~~ 169 (177)
T 3rsn_A 91 EHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKE-RDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSN 169 (177)
T ss_dssp SSCCSCEETTTTHHHHHHHTGGGTCCCCCCSCCSGGGTHHHHHHTC-TTTEEEESSCCTTCCCCGGGCSEEEESCCCGGG
T ss_pred cCccccccccchHHHHHHHHHHHhcCCCccccccHHHHHHHHHhcC-CceEEeccCCCcCcccccccccceeeehhhhhh
Confidence 7789999999999999999999999889999999999999999999 99999888774 39999999999
Q ss_pred CCchhHHh
Q psy4384 149 IKPNYEQM 156 (661)
Q Consensus 149 ~~p~~~~~ 156 (661)
|+|+||+|
T Consensus 170 i~p~ye~~ 177 (177)
T 3rsn_A 170 IGPAYDNQ 177 (177)
T ss_dssp CCCCCC--
T ss_pred cCCCcccC
Confidence 99999985
No 3
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-40 Score=319.60 Aligned_cols=166 Identities=17% Similarity=0.294 Sum_probs=146.4
Q ss_pred CcCCCCCCeEEeCCCcEEEeCC-CeeEEEEeEEEeCCeEEEEEEEEeeCCCCcEEEEEeCCCCCCCCCCCCcCccEEEEc
Q psy4384 267 ALHDRAPQLRISEDRLAVTGDK-GYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYANLQTPLGYDKFGYSWRS 345 (661)
Q Consensus 267 s~~dr~~~l~ls~d~l~v~~~~-g~~~vRa~~~v~~G~~YfEv~i~~~~~~~~vriG~a~~~~~l~~pvG~d~~syg~~~ 345 (661)
|.+||++.|.|++|.|++++.. +|++|||++|+.+|+|||||+|.+.+.+++++|||+++.+++++++|+|.+||||++
T Consensus 3 s~~dr~~~l~~~~d~l~~~~~~~~~~~vra~~p~~~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~~~~G~d~~S~gy~~ 82 (171)
T 2yyo_A 3 SGSSGFKHILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHA 82 (171)
T ss_dssp ---CEEESEEEETTEEEECCCSSCCEEEECSSCCCSSSCEEEEEEEEETTTCCCEEEEECTTCCTTSCTTSSTTCEEEET
T ss_pred CcccCcceEEEcCCEEEEeCCCCceeEEEECCCCCCCCEEEEEEEEECCCCcEEEEEecCCCCCCccCCCccCCEEEEEc
Confidence 6789999999999999999964 899999999999999999999999888899999999999999999999999999999
Q ss_pred CCCcEEeCC-CCcccCCCCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccchhccchhhHHHhhcccCCCcEEE
Q psy4384 346 RKGTRFHEC-RGKHYSEGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEKDKVTEALKRLQTLDQSQIV 424 (661)
Q Consensus 346 ~~G~~~h~s-~~~~yg~~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~e~~d~~~~~~~~~~~~~~s~I~ 424 (661)
.+|.++|++ .+++||++|++||||||+||+++. ....++|+
T Consensus 83 ~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~--------------------------------------~~~~~~i~ 124 (171)
T 2yyo_A 83 DDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSF--------------------------------------DVQTAQIF 124 (171)
T ss_dssp TTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGG--------------------------------------SSSCEEEE
T ss_pred CCCeEEeCCCCCCcCCCCCCCCCEEEEEEEeccC--------------------------------------CCCcEEEE
Confidence 999999975 689999999999999999999740 01227999
Q ss_pred EEECCeeccccceeccCCceEEEEEecC-CcEEEEeCCCCCCCCCCC
Q psy4384 425 FYKNGKSQGVAFQDIYAGYYYPCVSLHK-NCTVSVNFGPHFKHALPT 470 (661)
Q Consensus 425 f~kNG~~~G~AF~~i~~g~yyPavSl~~-g~~v~~NFG~~F~~~p~~ 470 (661)
|||||+.||+||+++..+.||||||+.. |++|++|||++|++||++
T Consensus 125 Ft~NG~~lg~af~~~~~~~lyPaV~l~~~g~~v~vNFG~~~~~pp~~ 171 (171)
T 2yyo_A 125 FTKNGKRVGSTIMPMSPDGLFPAVGMHSLGEEVRLHLNAELSGPSSG 171 (171)
T ss_dssp EEETTEEEEEEEESSCSSSCEEEEEECSTTEEEEEETTCCC------
T ss_pred EEECCEEcCceecCCcCCCEEEEEEEecCCCEEEEECCCCCcCCCCC
Confidence 9999999999999998899999999998 999999999999999874
No 4
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=99.97 E-value=2.6e-31 Score=291.78 Aligned_cols=148 Identities=28% Similarity=0.499 Sum_probs=132.4
Q ss_pred eeeecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhccc
Q psy4384 505 LKLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINLA 584 (661)
Q Consensus 505 L~la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~~ 584 (661)
+.+++|++||||||||||||+++++||||||||||+|++|+|+++|+|+++|+||+++++.+.+.+..+++.++..+
T Consensus 197 ~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l--- 273 (438)
T 3nem_A 197 IMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFEL--- 273 (438)
T ss_dssp HGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCC---
T ss_pred HHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhccccc---
Confidence 35679999999999999999999999999999999999999889999999999999999999988776666554322
Q ss_pred cccccccccCCcccccCHHHHHHHHHHcCCCCCCCCCCchHHHHHHhhhcc----CceEEEEcCcccccccccccCCCCC
Q psy4384 585 NITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKYTN----NVPIFIINWPKHVKPFYMKRSGEDP 660 (661)
Q Consensus 585 ~~~~l~~~~~~pf~rit~~EAi~lL~~~~i~~~~g~dl~~~~E~~L~e~~~----~~PvFv~~yP~~~~PFY~k~~~~dp 660 (661)
..+..||+||||.||+++|++.|+++++|.|+++++|++|++++. .+|+||+|||++++|||||++++||
T Consensus 274 ------~~~~~pf~rity~eai~~l~~~g~~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p 347 (438)
T 3nem_A 274 ------EEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKP 347 (438)
T ss_dssp ------CCCCSSCCEEEHHHHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTST
T ss_pred ------ccCCCCceEEEHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCC
Confidence 124579999999999999999999999999999999999988763 7899999999999999999999988
Q ss_pred C
Q psy4384 661 D 661 (661)
Q Consensus 661 ~ 661 (661)
+
T Consensus 348 ~ 348 (438)
T 3nem_A 348 E 348 (438)
T ss_dssp T
T ss_pred C
Confidence 4
No 5
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=99.96 E-value=4.4e-30 Score=283.40 Aligned_cols=143 Identities=31% Similarity=0.580 Sum_probs=123.7
Q ss_pred ecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcccccc
Q psy4384 508 DLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINLANIT 587 (661)
Q Consensus 508 a~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~~~~~ 587 (661)
++|++||||||||||||+++|+||||||||||||++|+| ++|+|+++|+||+++++.+.+++...++.....
T Consensus 218 ~~g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d-~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~------- 289 (456)
T 3m4p_A 218 IASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFIS-FEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPH------- 289 (456)
T ss_dssp HHHHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------
T ss_pred HhccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCC-HHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcc-------
Confidence 357999999999999999999999999999999999998 999999999999999999988765544322111
Q ss_pred ccccccCCcccccCHHHHHHHHHHcCCCC-----CCCCCCchHHHHHHhhhccCceEEEEcCcccccccccccCCCCCC
Q psy4384 588 DLQCIHDNPFIRMSYSAAVTILTRHGFDV-----NPDSGLSKQHELFLVKYTNNVPIFIINWPKHVKPFYMKRSGEDPD 661 (661)
Q Consensus 588 ~l~~~~~~pf~rit~~EAi~lL~~~~i~~-----~~g~dl~~~~E~~L~e~~~~~PvFv~~yP~~~~PFY~k~~~~dp~ 661 (661)
+. .+..||+||||.||+++|++++++. .+|.+++.++|++|++++ .+||||+|||++++|||||++++||+
T Consensus 290 -~~-~~~~pf~rity~eAi~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~-~~P~fv~~yP~~~~pfy~k~~~~dp~ 365 (456)
T 3m4p_A 290 -LK-LPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI-GCPIFMIHFPSKMKAFYMSKVPGHPD 365 (456)
T ss_dssp -CC-CCCSSCEEEEHHHHHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHH-TSCEEEECCBGGGSCTTBCEETTEEE
T ss_pred -cc-cCCCCCeEeeHHHHHHHHHHcCCCccccCcchHHHHHHHHHHHHHHHh-CceEEEECCCchhCccccccCCCCCC
Confidence 11 2457999999999999999988753 478899999999999885 68999999999999999999998873
No 6
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=99.95 E-value=1e-28 Score=275.87 Aligned_cols=151 Identities=26% Similarity=0.521 Sum_probs=129.2
Q ss_pred eeeecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhccc
Q psy4384 505 LKLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINLA 584 (661)
Q Consensus 505 L~la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~~ 584 (661)
+.|++|++|||+||||||||+++|+||||||||||||++|.++++++|+++|+||+++++.+.+++..+++.+...++.
T Consensus 304 ~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~- 382 (548)
T 3i7f_A 304 MAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPF- 382 (548)
T ss_dssp HHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCC-
T ss_pred HHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCc-
Confidence 3578999999999999999999999999999999999999855999999999999999999988877777666554432
Q ss_pred cccccccccCCcccccCHHHHHHHHHHcCCCCCCCCCCchHHHHHHhhhc---cCce-EEEEcCcccccccccccCCCCC
Q psy4384 585 NITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKYT---NNVP-IFIINWPKHVKPFYMKRSGEDP 660 (661)
Q Consensus 585 ~~~~l~~~~~~pf~rit~~EAi~lL~~~~i~~~~g~dl~~~~E~~L~e~~---~~~P-vFv~~yP~~~~PFY~k~~~~dp 660 (661)
..+. . .||+||||.||+++|++.|++++++.|+++++|++|++.+ .+.| +||+|||++++||||+++++||
T Consensus 383 --~~~~--~-~pf~rit~~eai~~l~~~g~~~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp 457 (548)
T 3i7f_A 383 --EDLI--Y-RPFLRLTYKEAIEMLRASGETIGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDP 457 (548)
T ss_dssp --CCCC--C-CSCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCT
T ss_pred --cccc--c-CCcceeEHHHHHHHHHHcCCCCCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCC
Confidence 1121 1 6899999999999999999999899999999999988642 3344 5678999999999999999988
Q ss_pred C
Q psy4384 661 D 661 (661)
Q Consensus 661 ~ 661 (661)
+
T Consensus 458 ~ 458 (548)
T 3i7f_A 458 N 458 (548)
T ss_dssp T
T ss_pred C
Confidence 4
No 7
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=99.95 E-value=5.5e-28 Score=265.93 Aligned_cols=142 Identities=31% Similarity=0.602 Sum_probs=120.1
Q ss_pred cccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHhhhhccccc
Q psy4384 509 LSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEE--LLTYRKLINLANI 586 (661)
Q Consensus 509 ~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~--l~~~~~~~~~~~~ 586 (661)
+|++||||||||||||+++++||||||||||+|++|+| ++|+|+++|+||+++++.+.+.+... ++... .+
T Consensus 195 ~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d-~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~--~~---- 267 (435)
T 2xgt_A 195 PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFIT-LDDLMEKIEELVCDTVDRLLADEEAKKLLEHIN--PK---- 267 (435)
T ss_dssp HHHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHS--TT----
T ss_pred hccCceEEEecceecCCCCccccccceeEEEEEEecCC-HHHHHHHHHHHHHHHHHHHhccccchhhhhhcc--cc----
Confidence 57999999999999999999999999999999999998 99999999999999999998765321 22111 11
Q ss_pred cccccccCCcccccCHHHHHHHHHHcCCC------CCCCCCCchHHHHHHhhhccCceEEEEcCcccccccccccCCCCC
Q psy4384 587 TDLQCIHDNPFIRMSYSAAVTILTRHGFD------VNPDSGLSKQHELFLVKYTNNVPIFIINWPKHVKPFYMKRSGEDP 660 (661)
Q Consensus 587 ~~l~~~~~~pf~rit~~EAi~lL~~~~i~------~~~g~dl~~~~E~~L~e~~~~~PvFv~~yP~~~~PFY~k~~~~dp 660 (661)
+. ....||+||||.||++++++.++. ..+|.++..++|++|.+.+ .+|+||+|||++++||||+.+++||
T Consensus 268 --~~-~~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~-~~p~fv~d~P~~~~~f~a~~~~~~p 343 (435)
T 2xgt_A 268 --FQ-PPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDAQDN 343 (435)
T ss_dssp --CC-CCCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHHHHHHHHHH-TSCEEEECCBGGGSCTTBCBCSSCT
T ss_pred --cc-ccCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHHHHHHHHhc-CCcEEEECCChhhCcccCCCCCCCc
Confidence 11 124689999999999999988765 3467789999999998875 6799999999999999999999887
Q ss_pred C
Q psy4384 661 D 661 (661)
Q Consensus 661 ~ 661 (661)
+
T Consensus 344 ~ 344 (435)
T 2xgt_A 344 T 344 (435)
T ss_dssp T
T ss_pred C
Confidence 4
No 8
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=99.95 E-value=9.8e-28 Score=263.18 Aligned_cols=145 Identities=27% Similarity=0.545 Sum_probs=129.0
Q ss_pred eecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhccccc
Q psy4384 507 LDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINLANI 586 (661)
Q Consensus 507 la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~~~~ 586 (661)
+++|++|||+||||||||+++++||+|||||||+|++|.+ ++|+|+++|+||+++++.+.+++..+++.++..++
T Consensus 195 ~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~---- 269 (429)
T 1wyd_A 195 MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFAD-YNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPP---- 269 (429)
T ss_dssp HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCC----
T ss_pred HHhCcCceEEEcccccccCCccccccceeeEeeeeecCCC-HHHHHHHHHHHHHHHHHHHhccchhhhhhcccccc----
Confidence 6678999999999999999999899999999999999998 99999999999999999999887777766543221
Q ss_pred cccccccCCcccccCHHHHHHHHHHcCCCCCCCCCCchHHHHHHhhhccCceEEEEcCcccccccccccCCCCCC
Q psy4384 587 TDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKYTNNVPIFIINWPKHVKPFYMKRSGEDPD 661 (661)
Q Consensus 587 ~~l~~~~~~pf~rit~~EAi~lL~~~~i~~~~g~dl~~~~E~~L~e~~~~~PvFv~~yP~~~~PFY~k~~~~dp~ 661 (661)
.++.||+||||.||++++++.++++.++.++..++|++|++.+...|+||+|||++++||||+++++||+
T Consensus 270 -----~l~~pf~rity~eA~~~~~~~g~~~~~~~~l~~~~e~~l~~~~~~~p~fv~d~P~~~~pfy~~~~~~~p~ 339 (429)
T 1wyd_A 270 -----EVKIPIKRLKYTEAIEILRSKGYNIKFGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTKSKSENPE 339 (429)
T ss_dssp -----CCCSSCEEEEHHHHHHHHHHSSCCCCTTSCCCHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCCC-CC
T ss_pred -----cCCCCccEEEHHHHHHHHHhcCCCcccCcccCcHHHHHHHHHhccCCEEEecCChhhChhhCCcCCCCCC
Confidence 1256999999999999999999888899999999999999887657999999999999999999999884
No 9
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=99.93 E-value=8.5e-27 Score=256.26 Aligned_cols=147 Identities=35% Similarity=0.659 Sum_probs=129.7
Q ss_pred eecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhccccc
Q psy4384 507 LDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINLANI 586 (661)
Q Consensus 507 la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~~~~ 586 (661)
+++|++|||+||||||||+++++||+|||||||+|++|.+ ++|+|+++|+||+++++.+.+++..+++.++..++
T Consensus 196 ~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~---- 270 (434)
T 1x54_A 196 AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMD-LWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLT---- 270 (434)
T ss_dssp HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCH----
T ss_pred HhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCC-HHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccc----
Confidence 5678999999999999999999899999999999999998 99999999999999999998887777766544322
Q ss_pred cccccccCCcccccCHHHHHHHHHHcCCCCCCCCCCchHHHHHHhhhccCceEEEEcCcccccccccccCCCCCC
Q psy4384 587 TDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKYTNNVPIFIINWPKHVKPFYMKRSGEDPD 661 (661)
Q Consensus 587 ~~l~~~~~~pf~rit~~EAi~lL~~~~i~~~~g~dl~~~~E~~L~e~~~~~PvFv~~yP~~~~PFY~k~~~~dp~ 661 (661)
.+.. ++.||+|+||.||++++++.+++++++.+++.++|++|++.+ .+|+||+|||++++||||+++++||+
T Consensus 271 -~~~~-~~~pf~rity~ea~~~~~~~g~~~~~~~dl~~~~e~~l~~~~-~~p~fv~d~P~~~~pfy~~~~~~~p~ 342 (434)
T 1x54_A 271 -TLKN-TEPPFPRISYDEAIDILQSKGVNVEWGDDLGADEERVLTEEF-DRPFFVYGYPKHIKAFYMKEDPNDPR 342 (434)
T ss_dssp -HHHT-CCSSCCEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHTTC-SSCEEEEEEEGGGSCTTBCBCSSCTT
T ss_pred -cccc-cCCCCcEEEHHHHHHHHHhcCCCcccCCccChHHHHHHHHHh-CCcEEEEcCChhhCcccCCcCCCCCC
Confidence 1111 356999999999999999999988899999999999999875 56999999999999999999999884
No 10
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=99.93 E-value=2.8e-26 Score=255.41 Aligned_cols=155 Identities=23% Similarity=0.464 Sum_probs=130.1
Q ss_pred eeeeecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcc
Q psy4384 504 KLKLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINL 583 (661)
Q Consensus 504 qL~la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~ 583 (661)
|+.+++|++|||+||||||||++++.||+|||||||+|++|.++++|+|+++|+||+++++.+.+++..+++.+...+..
T Consensus 237 k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~ 316 (487)
T 1eov_A 237 QQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPV 316 (487)
T ss_dssp HHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCC
T ss_pred HHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCC
Confidence 34578999999999999999999999999999999999999865999999999999999999988887777665544332
Q ss_pred ccccccccccCCcccccCHHHHHHHHHHcCCCCCCCCCCchHHHHHHhhh----ccCceEEEEcCcccccccccccCCCC
Q psy4384 584 ANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKY----TNNVPIFIINWPKHVKPFYMKRSGED 659 (661)
Q Consensus 584 ~~~~~l~~~~~~pf~rit~~EAi~lL~~~~i~~~~g~dl~~~~E~~L~e~----~~~~PvFv~~yP~~~~PFY~k~~~~d 659 (661)
.. +......||++++|.||+++|++.|+++.++.++..++|+.|++. +...|+||+|||++++|||++++++|
T Consensus 317 ~~---~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~pfy~~~~~~d 393 (487)
T 1eov_A 317 EE---FKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPAN 393 (487)
T ss_dssp CC---CCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCTTBCBCSSC
T ss_pred cc---eecccCCCeeEEEHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHHhCCCCEEEECCccccChhhcCcCCCC
Confidence 11 111113489999999999999999998888889999999998854 33457899999999999999999998
Q ss_pred CC
Q psy4384 660 PD 661 (661)
Q Consensus 660 p~ 661 (661)
|+
T Consensus 394 p~ 395 (487)
T 1eov_A 394 PK 395 (487)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 11
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=99.93 E-value=1.6e-26 Score=257.87 Aligned_cols=141 Identities=24% Similarity=0.327 Sum_probs=110.4
Q ss_pred eeecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcccc
Q psy4384 506 KLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINLAN 585 (661)
Q Consensus 506 ~la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~~~ 585 (661)
.+++|++||||||||||||+++ +||||||||||+|+||+| ++|+|+++|+||+++++.+.+++. +++.+..+
T Consensus 267 L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~v~~~v~~~~~--~~~~~~~i---- 338 (529)
T 4ex5_A 267 LIVGGFERVFEINRNFRNEGVS-PRHNPEFTMMEFYAAYTD-YRWLMDFTERLIRQAAVDALGTAT--IQYQGREL---- 338 (529)
T ss_dssp HHHTTCSEEEEEEEEECCSCCB-TTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHSCSE--EEETTEEE----
T ss_pred HHhcCCCcEEEeehheecCCCC-CCcccHhHhhhhhhhcCC-HHHHHHHHHHHHHHHHHHHhCcCc--eecCceee----
Confidence 4789999999999999999998 579999999999999998 999999999999999999987642 22211111
Q ss_pred ccccccccCCcccccCHHHHHHHHH-------------------HcCCCCCC----CCC---CchHHHHHHhhhccCceE
Q psy4384 586 ITDLQCIHDNPFIRMSYSAAVTILT-------------------RHGFDVNP----DSG---LSKQHELFLVKYTNNVPI 639 (661)
Q Consensus 586 ~~~l~~~~~~pf~rit~~EAi~lL~-------------------~~~i~~~~----g~d---l~~~~E~~L~e~~~~~Pv 639 (661)
.+..||+||||.||++.+. ++|++.+. .++ +..+.+..+++....+||
T Consensus 339 ------d~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~~l~~P~ 412 (529)
T 4ex5_A 339 ------DLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPT 412 (529)
T ss_dssp ------ETTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTGGGCCSCE
T ss_pred ------ccCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhccccCCCE
Confidence 2467999999999998643 34665544 333 334444555666567899
Q ss_pred EEEcCcccccccccccCCCCCC
Q psy4384 640 FIINWPKHVKPFYMKRSGEDPD 661 (661)
Q Consensus 640 Fv~~yP~~~~PFY~k~~~~dp~ 661 (661)
||+|||++++||| |++++||+
T Consensus 413 FI~dyP~~~spla-k~~~~~p~ 433 (529)
T 4ex5_A 413 FIIDYPIEVSPLA-RESDTVAG 433 (529)
T ss_dssp EEEEEEGGGCTTB-CBCSSSTT
T ss_pred EEECCchhhCCCc-ccCCCCCC
Confidence 9999999999996 77888874
No 12
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=99.92 E-value=5.3e-26 Score=248.96 Aligned_cols=140 Identities=22% Similarity=0.404 Sum_probs=108.3
Q ss_pred cccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhccccccc
Q psy4384 509 LSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINLANITD 588 (661)
Q Consensus 509 ~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~~~~~~ 588 (661)
+|++|||+||||||||+++++||+|||||||+|++|+++++|+|+++|+||+++++.+.+++..+++.++..++
T Consensus 188 ~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~------ 261 (422)
T 1n9w_A 188 GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP------ 261 (422)
T ss_dssp HHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCC------
T ss_pred hCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccc------
Confidence 67999999999999999999899999999999999993399999999999999999998887777766543221
Q ss_pred cccccCCcccccCHHHHHHHHHHcCCCCCCCCCCchHHHHHHhhhcc----CceEEEEcCcccccccccccCCC
Q psy4384 589 LQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKYTN----NVPIFIINWPKHVKPFYMKRSGE 658 (661)
Q Consensus 589 l~~~~~~pf~rit~~EAi~lL~~~~i~~~~g~dl~~~~E~~L~e~~~----~~PvFv~~yP~~~~PFY~k~~~~ 658 (661)
....||+||||.||++++++.+ ++.++.++..++|++|++.+. ..|+||+|||++++||||+.+++
T Consensus 262 ---~~~~pf~rity~eA~~~~~~~~-~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d 331 (422)
T 1n9w_A 262 ---SFPQDIPRLTHAEAKRILKEEL-GYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED 331 (422)
T ss_dssp ---CCSSSCCEEEHHHHHHHHHHTS-CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT
T ss_pred ---ccCCCcceeEHHHHHHHHHhcC-CcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC
Confidence 1126899999999999998887 677888999999999987653 36999999999999999998754
No 13
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=99.92 E-value=7.9e-25 Score=219.79 Aligned_cols=155 Identities=19% Similarity=0.329 Sum_probs=137.9
Q ss_pred ceEeCcCCCCCCeEEeCCCcEEEe---CCCeeEEEEeEEEeCCeEEEEEEEEeeCCCCcEEEEEeCCCCC-----CCCCC
Q psy4384 263 HVLLALHDRAPQLRISEDRLAVTG---DKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYAN-----LQTPL 334 (661)
Q Consensus 263 ~v~~s~~dr~~~l~ls~d~l~v~~---~~g~~~vRa~~~v~~G~~YfEv~i~~~~~~~~vriG~a~~~~~-----l~~pv 334 (661)
.++|++.++++.|.||+|+++|+. .++|..|||+.++.+|+|||||+|.....++.++|||+++.++ .+..+
T Consensus 43 ~~tlDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vl~~~~~~sGrhYWEV~v~~~~~g~~~~vGv~~~~~~r~~~g~~~~l 122 (217)
T 3emw_A 43 RHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALL 122 (217)
T ss_dssp HTSEEEEEECTTEEEEGGGTEEEECCBSSCEEEEEESCCBSSSEEEEEEECCGGGCTTCCEEEEECTTSCCEESSSCCCT
T ss_pred ceEeCcccCCCCEEECCCCeEEEECccCCCCCEEEeCCCccCccEEEEEEEcccCCCCceeEEEEcCccccccCCccccc
Confidence 567999999999999999999986 3679999999999999999999998754457899999999987 46789
Q ss_pred CCcCccEEEEcCCCcEEeCCCC---cccC-----CCCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccchhccc
Q psy4384 335 GYDKFGYSWRSRKGTRFHECRG---KHYS-----EGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEKD 406 (661)
Q Consensus 335 G~d~~syg~~~~~G~~~h~s~~---~~yg-----~~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~e~~d 406 (661)
|+|..||+|+..+|..+|++.. ..|+ +.+..+|+|||+||++.
T Consensus 123 G~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~----------------------------- 173 (217)
T 3emw_A 123 GSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEE----------------------------- 173 (217)
T ss_dssp TSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTT-----------------------------
T ss_pred cCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCC-----------------------------
Confidence 9999999999888999998753 3575 56899999999999998
Q ss_pred hhhHHHhhcccCCCcEEEEEECCeeccccceeccCCceEEEEEec-CCcEEEEeC
Q psy4384 407 KVTEALKRLQTLDQSQIVFYKNGKSQGVAFQDIYAGYYYPCVSLH-KNCTVSVNF 460 (661)
Q Consensus 407 ~~~~~~~~~~~~~~s~I~f~kNG~~~G~AF~~i~~g~yyPavSl~-~g~~v~~NF 460 (661)
++|+||+||+.+|.||+++....+||+||+. .+++|++++
T Consensus 174 --------------G~LsFy~ng~~lg~aF~~~~~~~LyP~~sl~~g~~~v~l~~ 214 (217)
T 3emw_A 174 --------------GTLGYAIGGTYLGPAFRGLKGRTLYPAVSAVWGQCQVRIRY 214 (217)
T ss_dssp --------------TEEEEEETTEEEEEEECCCTTCCBEEEEEECSTTCEEEEEE
T ss_pred --------------CEEEEEECCeEeEEEEECCCCCEEEEEEEeccCCcEEEEEe
Confidence 9999999999999999999988999999985 578999875
No 14
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=99.91 E-value=1.1e-25 Score=252.20 Aligned_cols=145 Identities=19% Similarity=0.246 Sum_probs=107.7
Q ss_pred eeecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcccc
Q psy4384 506 KLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINLAN 585 (661)
Q Consensus 506 ~la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~~~ 585 (661)
.+++|++||||||||||||++++ ||||||||||+|+||+| |+|+|+++|+||+++++.+.+++. +++.....+.
T Consensus 239 liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~v~~~v~~~~~--~~~~~~~~d~-- 312 (521)
T 3bju_A 239 LVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YHDLMEITEKMVSGMVKHITGSYK--VTYHPDGPEG-- 312 (521)
T ss_dssp HHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHSSSE--EEECTTCTTS--
T ss_pred HHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCC-HHHHHHHHHHHHHHHHHHHhCCce--EEeccccccc--
Confidence 46799999999999999999997 79999999999999998 999999999999999999987642 2111110000
Q ss_pred ccccccccCCcccccCHHHHHHHHHHcCCCCCCCCCC------------------------------chHHHHHHhhhcc
Q psy4384 586 ITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGL------------------------------SKQHELFLVKYTN 635 (661)
Q Consensus 586 ~~~l~~~~~~pf~rit~~EAi~lL~~~~i~~~~g~dl------------------------------~~~~E~~L~e~~~ 635 (661)
..+...+..||+|+||.||++.+.. +++.++.++ +..+|+++.+.+
T Consensus 313 -~~~~~d~~~pf~rit~~eai~~~~g--~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l- 388 (521)
T 3bju_A 313 -QAYDVDFTPPFRRINMVEELEKALG--MKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC- 388 (521)
T ss_dssp -CCEEEECCSSCEEEEHHHHHHHHHT--SCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGC-
T ss_pred -ccceeccCCCcccccHHHHHHHHhC--CCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhc-
Confidence 0011124579999999999988753 333322222 233456665554
Q ss_pred CceEEEEcCcccccccccccCCCCCC
Q psy4384 636 NVPIFIINWPKHVKPFYMKRSGEDPD 661 (661)
Q Consensus 636 ~~PvFv~~yP~~~~PFY~k~~~~dp~ 661 (661)
.+|+||+|||++++|| ++++++||+
T Consensus 389 ~~P~fI~dyP~~~spl-a~~~~~dp~ 413 (521)
T 3bju_A 389 INPTFICDHPQIMSPL-AKWHRSKEG 413 (521)
T ss_dssp CSCEEEECCBGGGCTT-BCBCSSSTT
T ss_pred CCcEEEECCccccCcc-cccCCCCCC
Confidence 5799999999999999 566777774
No 15
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=99.91 E-value=4e-24 Score=213.92 Aligned_cols=156 Identities=19% Similarity=0.327 Sum_probs=136.4
Q ss_pred CceEeCcCCCCCCeEEeCCC-cEEEe---CCCeeEEEEeEEEeCCeEEEEEEEEeeCCCCcEEEEEeCCCCCC-----CC
Q psy4384 262 SHVLLALHDRAPQLRISEDR-LAVTG---DKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYANL-----QT 332 (661)
Q Consensus 262 ~~v~~s~~dr~~~l~ls~d~-l~v~~---~~g~~~vRa~~~v~~G~~YfEv~i~~~~~~~~vriG~a~~~~~l-----~~ 332 (661)
..++|++.++++.|.||+|+ +++.. ..+|.+|||+.++.+|+|||||+|.....+++++|||+++.+++ +.
T Consensus 31 ~~~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~~~~~w~vGV~~~~~~r~~~g~~~ 110 (212)
T 2jk9_A 31 LLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTT 110 (212)
T ss_dssp HHTSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGGCTTCCEEEEECTTSCCEEESSCC
T ss_pred cccccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCccCCeEEEEEEEecccCCCcEEEEEEcCCccccccCccc
Confidence 45789999999999999997 57763 35899999999999999999999975445789999999999886 46
Q ss_pred CCCCcCccEEEEcCCCcEEeCCCCc---c------cCCCCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccchh
Q psy4384 333 PLGYDKFGYSWRSRKGTRFHECRGK---H------YSEGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYE 403 (661)
Q Consensus 333 pvG~d~~syg~~~~~G~~~h~s~~~---~------yg~~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~e 403 (661)
.+|.|..||+|+..+|.++|++... . |++.|..||+|||+||+..
T Consensus 111 ~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~-------------------------- 164 (212)
T 2jk9_A 111 LVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDD-------------------------- 164 (212)
T ss_dssp CTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTT--------------------------
T ss_pred ccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCC--------------------------
Confidence 7899999999998889999977542 2 4677899999999999988
Q ss_pred ccchhhHHHhhcccCCCcEEEEEECCeeccccceeccCCceEEEEEec-CCcEEEEeC
Q psy4384 404 EKDKVTEALKRLQTLDQSQIVFYKNGKSQGVAFQDIYAGYYYPCVSLH-KNCTVSVNF 460 (661)
Q Consensus 404 ~~d~~~~~~~~~~~~~~s~I~f~kNG~~~G~AF~~i~~g~yyPavSl~-~g~~v~~NF 460 (661)
++|.||+||+.+|.||+++..+.+||++|+. .++.|++||
T Consensus 165 -----------------G~lsFy~ng~~l~~aF~~~~~~~l~P~f~l~~g~~~v~l~~ 205 (212)
T 2jk9_A 165 -----------------GTLSFIVDGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRY 205 (212)
T ss_dssp -----------------TEEEEEETTEEEEEEECCCTTCCBEEEEEECCTTCEEEEEE
T ss_pred -----------------CEEEEEECCEEeEEEeccCCCCEEeeEEEEEcCCcEEEEEE
Confidence 9999999999999999999877999999995 578999997
No 16
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=99.91 E-value=2.9e-25 Score=247.61 Aligned_cols=141 Identities=23% Similarity=0.422 Sum_probs=106.0
Q ss_pred eeeecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhccc
Q psy4384 505 LKLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINLA 584 (661)
Q Consensus 505 L~la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~~ 584 (661)
+.+++|++||||||||||||++++ ||||||||||+|++|+| ++|+|+++|+||+++++.+.+++. +++.+..
T Consensus 245 ~L~v~G~~rVyeIg~~FR~E~~~~-rH~pEFt~lE~e~af~d-~~dlm~l~E~li~~~~~~v~~~~~--i~~~~~~---- 316 (504)
T 1e1o_A 245 RLVVGGFERVFEINRNFRNEGISV-RHNPEFTMMELYMAYAD-YHDLIELTESLFRTLAQEVLGTTK--VTYGEHV---- 316 (504)
T ss_dssp HHHHHTCCEEEEEEEEECCCCCCC--CCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSSSE--EEETTEE----
T ss_pred HHhhcCCCcEEEEcccccCCCCCc-cccCceeeeeeeecCCC-HHHHHHHHHHHHHHHHHHHhCCce--eeeCCEe----
Confidence 357799999999999999999986 79999999999999998 999999999999999999987653 2221111
Q ss_pred cccccccccCCcccccCHHHHHHHHHH-c------------------CCCCCCCCCC----chHHHHHHhhhccCceEEE
Q psy4384 585 NITDLQCIHDNPFIRMSYSAAVTILTR-H------------------GFDVNPDSGL----SKQHELFLVKYTNNVPIFI 641 (661)
Q Consensus 585 ~~~~l~~~~~~pf~rit~~EAi~lL~~-~------------------~i~~~~g~dl----~~~~E~~L~e~~~~~PvFv 641 (661)
+ .+..||+||||.||++.+.. . |+++..++.+ ....|. +++....+|+||
T Consensus 317 ----i--~~~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~-~ve~~~~~p~fV 389 (504)
T 1e1o_A 317 ----F--DFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDE-VAEAHLIQPTFI 389 (504)
T ss_dssp ----E--ETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHH-HTGGGCCSCEEE
T ss_pred ----e--ccCCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHH-HhhccCCCeEEE
Confidence 1 13569999999999987754 1 3333222222 122333 344445679999
Q ss_pred EcCcccccccccccCCCCCC
Q psy4384 642 INWPKHVKPFYMKRSGEDPD 661 (661)
Q Consensus 642 ~~yP~~~~PFY~k~~~~dp~ 661 (661)
+|||++++|| ++++++||+
T Consensus 390 ~dyP~~~~pf-~~~~~~dp~ 408 (504)
T 1e1o_A 390 TEYPAEVSPL-ARRNDVNPE 408 (504)
T ss_dssp ECCBGGGCTT-BCBCSSCTT
T ss_pred ECCCcccCcC-cCCCCCCCC
Confidence 9999999999 677778874
No 17
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=99.90 E-value=5.1e-25 Score=245.17 Aligned_cols=141 Identities=25% Similarity=0.375 Sum_probs=106.6
Q ss_pred eeeecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhccc
Q psy4384 505 LKLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINLA 584 (661)
Q Consensus 505 L~la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~~ 584 (661)
+.+++|++||||||||||||++++ ||||||||||+|++|+| ++|+|+++|+||+++++.+.+++. +.+.+..+
T Consensus 236 ~l~v~G~~rVyeig~~FR~E~~~~-rH~pEFT~lE~e~af~d-~~dlm~l~E~ll~~l~~~v~~~~~--i~~~~~~i--- 308 (493)
T 3a74_A 236 RLIVGGLEKVYEIGRVFRNEGIST-RHNPEFTMLELYEAYAD-FRDIMKLTENLIAHIATEVLGTTK--IQYGEHLV--- 308 (493)
T ss_dssp HHHHTTCCEEEEEEEEECCCCCBT-TBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHSCSE--EEETTEEE---
T ss_pred HHhhcccCceEEECccccCCCCCc-ccCCceeEEEEEecCCC-HHHHHHHHHHHHHHHHHHHhCCce--EeeCCEee---
Confidence 357899999999999999999986 79999999999999998 999999999999999999987652 22211111
Q ss_pred cccccccccCCcccccCHHHHHHHHHH------------------cCCCCCCCCC----CchHHHHHHhhhccCceEEEE
Q psy4384 585 NITDLQCIHDNPFIRMSYSAAVTILTR------------------HGFDVNPDSG----LSKQHELFLVKYTNNVPIFII 642 (661)
Q Consensus 585 ~~~~l~~~~~~pf~rit~~EAi~lL~~------------------~~i~~~~g~d----l~~~~E~~L~e~~~~~PvFv~ 642 (661)
.+..||+||||.||++.+.. .|++++.++. +....|.++ +....+|+||+
T Consensus 309 -------~~~~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v-e~~~~~p~fv~ 380 (493)
T 3a74_A 309 -------DLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKV-EDKLIQPTFIY 380 (493)
T ss_dssp -------ECCSSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHT-GGGCCSCEEEE
T ss_pred -------ccCCCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHh-hcccCCcEEEE
Confidence 13568999999999977643 3343322222 222234433 44356799999
Q ss_pred cCcccccccccccCCCCCC
Q psy4384 643 NWPKHVKPFYMKRSGEDPD 661 (661)
Q Consensus 643 ~yP~~~~PFY~k~~~~dp~ 661 (661)
|||++++|| ++++++||+
T Consensus 381 dyP~~~~pf-~~~~~~dp~ 398 (493)
T 3a74_A 381 GHPVEISPL-AKKNPDDPR 398 (493)
T ss_dssp CCBGGGCTT-BCBCSSCTT
T ss_pred CCCcccCCc-cCcCCCCCC
Confidence 999999999 677778874
No 18
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=99.90 E-value=1.7e-24 Score=231.14 Aligned_cols=143 Identities=18% Similarity=0.239 Sum_probs=89.5
Q ss_pred eeeeecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcc
Q psy4384 504 KLKLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINL 583 (661)
Q Consensus 504 qL~la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~ 583 (661)
|+.+++|++||||||||||||++ ++||||||||||+|++|+| ++|+|+++|+||+++++...-...+..+.+.++.+
T Consensus 102 k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d-~~d~m~~~E~li~~v~~~~~~~rity~ea~~~~~g- 178 (345)
T 3a5y_A 102 KRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYD-MYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLE- 178 (345)
T ss_dssp HHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHTC-
T ss_pred HHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCC-HHHHHHHHHHHHHHHHcCCCCcEeeHHHHHHHHhC-
Confidence 34578999999999999999999 7889999999999999998 99999999999999985100000001111111111
Q ss_pred ccccccccccCCcccccCHHHHHHHHHHcCCC-CCCC-CCCchHHHHHHhhhc---c--CceEEEEcCcccccccccccC
Q psy4384 584 ANITDLQCIHDNPFIRMSYSAAVTILTRHGFD-VNPD-SGLSKQHELFLVKYT---N--NVPIFIINWPKHVKPFYMKRS 656 (661)
Q Consensus 584 ~~~~~l~~~~~~pf~rit~~EAi~lL~~~~i~-~~~g-~dl~~~~E~~L~e~~---~--~~PvFv~~yP~~~~PFY~k~~ 656 (661)
...+.++++++.+++++.|+. +.++ +++.+..|++|++.+ . .+|+||+|||++++|| ++.+
T Consensus 179 -----------~d~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP~~~~~~-~~~~ 246 (345)
T 3a5y_A 179 -----------IDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASL-AQIS 246 (345)
T ss_dssp -----------CCTTCCC------------------------HHHHHHHHHHTGGGSSSSSCEEEECCBGGGCTT-BCBC
T ss_pred -----------CCCCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEECCChhhChh-hCCC
Confidence 111224555556667777776 6665 678888899887643 2 5799999999999999 6778
Q ss_pred CCCCC
Q psy4384 657 GEDPD 661 (661)
Q Consensus 657 ~~dp~ 661 (661)
++||.
T Consensus 247 ~~~~~ 251 (345)
T 3a5y_A 247 TEDHR 251 (345)
T ss_dssp SSCTT
T ss_pred CCCCC
Confidence 77773
No 19
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=99.87 E-value=1.1e-22 Score=205.60 Aligned_cols=158 Identities=20% Similarity=0.331 Sum_probs=134.8
Q ss_pred CceEeCcCCCCCCeEEeCCCcEEEe---CCCeeEEEEeEEEeCCeEEEEEEEEeeCCCCcEEEEEeCCCCC-----CCCC
Q psy4384 262 SHVLLALHDRAPQLRISEDRLAVTG---DKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYAN-----LQTP 333 (661)
Q Consensus 262 ~~v~~s~~dr~~~l~ls~d~l~v~~---~~g~~~vRa~~~v~~G~~YfEv~i~~~~~~~~vriG~a~~~~~-----l~~p 333 (661)
..++|++.+.++.|.||+|+++|+. .+++..|||+.++.+|+|||||+|...+.++.++|||+++.++ ....
T Consensus 39 ~~~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vlg~~~f~sGrhYWEV~V~~~~~~~~w~vGV~~~s~~~~r~~~~~~ 118 (226)
T 2afj_A 39 RHHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAAL 118 (226)
T ss_dssp HHHSSCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCCCSEEEEEEECCCCSSSCCCEEEEEESSCCCSSCSSSCC
T ss_pred cccEEccccCCCCEEEeCCCEEEEECCCCCCcCeEEECCCccCCEEEEEEEEeccCCCCCEEEEecCCcccccccccccc
Confidence 3567999999999999999999983 2467799999999999999999997644467899999998884 4567
Q ss_pred CCCcCccEEEEcCCCcEEeCCCC---ccc-----CCCCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccchhcc
Q psy4384 334 LGYDKFGYSWRSRKGTRFHECRG---KHY-----SEGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEK 405 (661)
Q Consensus 334 vG~d~~syg~~~~~G~~~h~s~~---~~y-----g~~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~e~~ 405 (661)
+|.+..||+|+..+|..+|++.. ..| ++.+..+|+|||+||+..
T Consensus 119 ~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~---------------------------- 170 (226)
T 2afj_A 119 LGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEE---------------------------- 170 (226)
T ss_dssp CCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTT----------------------------
T ss_pred ccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCC----------------------------
Confidence 89999999999878888887753 235 345789999999999988
Q ss_pred chhhHHHhhcccCCCcEEEEEECCeeccccceeccCCceEEEEEec-CCcEEEEeCCC
Q psy4384 406 DKVTEALKRLQTLDQSQIVFYKNGKSQGVAFQDIYAGYYYPCVSLH-KNCTVSVNFGP 462 (661)
Q Consensus 406 d~~~~~~~~~~~~~~s~I~f~kNG~~~G~AF~~i~~g~yyPavSl~-~g~~v~~NFG~ 462 (661)
++|.||+||+.+|.||+++..+.+||++++. .++.|++||-.
T Consensus 171 ---------------G~lSFy~ng~~l~~aF~~~~~~~L~P~f~l~~g~~~v~l~~~~ 213 (226)
T 2afj_A 171 ---------------GTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMG 213 (226)
T ss_dssp ---------------TEEEEESTTCSCSTTHHHHHHHCCEEEEEECCTTSCCEEEEES
T ss_pred ---------------CEEEEEECCeEeEEEEEcCCCCEEEEEEEcccCCCEEEEEEcC
Confidence 9999999999999999998877999999985 46788888743
No 20
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=99.85 E-value=4.3e-22 Score=225.48 Aligned_cols=82 Identities=21% Similarity=0.437 Sum_probs=69.0
Q ss_pred eeeeecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcc
Q psy4384 504 KLKLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINL 583 (661)
Q Consensus 504 qL~la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~ 583 (661)
|+.+++|++||||||||||||+++++|| |||||||+|++|+| ++|+|+++|+||+++++.+.+.
T Consensus 205 q~Lmv~G~~rvfqI~~~FR~E~~~~~r~-pEFT~lE~e~af~d-~~dvm~~~E~li~~i~~~v~~~-------------- 268 (580)
T 1l0w_A 205 QMLMVAGLDRYFQIARCFRDEDLRADRQ-PDFTQLDLEMSFVE-VEDVLELNERLMAHVFREALGV-------------- 268 (580)
T ss_dssp HHHHHTTCSEEEEEEEEECCCCCCSSCC-SEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHTCC--------------
T ss_pred HHHHHhccCCeEEEeceeeCCCCCCCcC-CCccceeeeecCCC-HHHHHHHHHHHHHHHHHHHhCC--------------
Confidence 4467899999999999999999998755 69999999999998 9999999999999999987542
Q ss_pred ccccccccccCCcccccCHHHHHHHH
Q psy4384 584 ANITDLQCIHDNPFIRMSYSAAVTIL 609 (661)
Q Consensus 584 ~~~~~l~~~~~~pf~rit~~EAi~lL 609 (661)
.+..||+||||.||++.+
T Consensus 269 --------~~~~pf~rity~eA~~~~ 286 (580)
T 1l0w_A 269 --------ELPLPFPRLSYEEAMERY 286 (580)
T ss_dssp --------CCCSSCCEEEHHHHHHHH
T ss_pred --------ccCCCccEEEHHHHHHHh
Confidence 023467777777777664
No 21
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=99.82 E-value=7e-21 Score=216.15 Aligned_cols=64 Identities=19% Similarity=0.363 Sum_probs=58.6
Q ss_pred eeeeecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhh
Q psy4384 504 KLKLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLES 569 (661)
Q Consensus 504 qL~la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~ 569 (661)
|+.+++|++||||||||||||+++++|| |||||||+|++|+| ++|+|+++|+||+++++.+.+.
T Consensus 199 q~Lmv~G~~rvfqI~~~FR~E~~~t~r~-pEFT~lE~e~af~d-~~dvm~~~E~li~~i~~~v~~~ 262 (585)
T 1c0a_A 199 QLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMT-APQVREVMEALVRHLWLEVKGV 262 (585)
T ss_dssp HHHHHTTCCEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcCCCceEEEeceeecCCCCCCcC-cccceeeeeecCCC-HHHHHHHHHHHHHHHHHHHhCC
Confidence 4467899999999999999999998755 59999999999998 9999999999999999998764
No 22
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.74 E-value=1.2e-18 Score=182.46 Aligned_cols=113 Identities=22% Similarity=0.410 Sum_probs=90.5
Q ss_pred eeecccceeEEEecccccCC--CCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcc
Q psy4384 506 KLDLSLSKVYTLNPTFRAEN--SKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINL 583 (661)
Q Consensus 506 ~la~g~~rVyeIg~~FRaE~--s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~ 583 (661)
.+++|++|||+||||||||+ +++.||+|||||||+|++|.+ ++|+|+++|+|+++++..+.+. ++..+
T Consensus 83 l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~-~~~l~~~~e~l~~~l~~~~~~~-------~~~~i-- 152 (294)
T 1nnh_A 83 AIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK-MEDIMRLIERLVYGLFRKAEEW-------TGREF-- 152 (294)
T ss_dssp HHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHH-------HSSCC--
T ss_pred HhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC-HHHHHHHHHHHHHHHHHHHHhh-------hcccc--
Confidence 45678999999999999999 888899999999999999998 9999999999999999876541 11111
Q ss_pred ccccccccccCCcccccCHHHHHHHHHHcCCCCCCCCCCchHHHHHHhhhccCceEEEEcCccccccccccc
Q psy4384 584 ANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKYTNNVPIFIINWPKHVKPFYMKR 655 (661)
Q Consensus 584 ~~~~~l~~~~~~pf~rit~~EAi~lL~~~~i~~~~g~dl~~~~E~~L~e~~~~~PvFv~~yP~~~~PFY~k~ 655 (661)
. .++. |+|++|.||++ +. |. ++|+ ++. ..+|+||+||| +|||++.
T Consensus 153 ------~-~~~~-~~r~~y~ea~~---~~------g~----~~er--~~~-~~~P~~v~~~P---~pf~~~~ 197 (294)
T 1nnh_A 153 ------P-KTKR-FEVFEYSEVLE---EF------GS----DEKA--SQE-MEEPFWIINIP---REFYDRE 197 (294)
T ss_dssp ------C-CCSS-CEEEEHHHHHH---HT------SS----HHHH--HHH-CSSCEEEECCC---CCTTBCE
T ss_pred ------c-cCCC-ceEeEHHHHHH---Hh------CC----hHhh--hhh-cCCCEEEEcCC---hHHhCCC
Confidence 1 1233 99999999996 22 21 5566 444 47899999999 9999986
No 23
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=99.57 E-value=3.4e-16 Score=177.26 Aligned_cols=82 Identities=20% Similarity=0.336 Sum_probs=69.8
Q ss_pred eeeeecccceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcc
Q psy4384 504 KLKLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYRKLINL 583 (661)
Q Consensus 504 qL~la~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~~~~~~ 583 (661)
|+.+++|++||||||||||||+++++ |+|||||||+|++|+| ++|+|+++|+||+++++.+..
T Consensus 209 q~l~v~g~~rvfqi~~~FR~E~~~t~-r~pEFt~lE~e~af~d-~~d~m~~~E~l~~~~~~~~~~--------------- 271 (617)
T 4ah6_A 209 QLLMVGGLDRYFQVARCYRDEGSRPD-RQPEFTQIDIEMSFVD-QTGIQSLIEGLLQYSWPNDKD--------------- 271 (617)
T ss_dssp HHHHHTSCSEEEEEEEEECCCSSCSS-SCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHSCSSSC---------------
T ss_pred HHHHhcccCcEEEEEhheecccCCCC-cCcceecceeeecCCC-HHHHHHHHHHHHHHHHHHhcC---------------
Confidence 34578999999999999999999876 7999999999999998 999999999999988643210
Q ss_pred ccccccccccCCcccccCHHHHHHHHH
Q psy4384 584 ANITDLQCIHDNPFIRMSYSAAVTILT 610 (661)
Q Consensus 584 ~~~~~l~~~~~~pf~rit~~EAi~lL~ 610 (661)
.+..||+||||.||++..-
T Consensus 272 --------~~~~pf~r~ty~eA~~~yg 290 (617)
T 4ah6_A 272 --------PVVVPFPTMTFAEVLATYG 290 (617)
T ss_dssp --------CCCSSCCEEEHHHHHHHTS
T ss_pred --------ccCCCceEeEHHHHHHHHc
Confidence 1356899999999998643
No 24
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=98.96 E-value=1e-08 Score=101.23 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=103.6
Q ss_pred ceEeCcCCCCCCeEEeCCCcEEEeC-------------CCeeEEEEeEEEeCCeEEEEEEEEeeCCCCcEEEEEeCCCCC
Q psy4384 263 HVLLALHDRAPQLRISEDRLAVTGD-------------KGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYAN 329 (661)
Q Consensus 263 ~v~~s~~dr~~~l~ls~d~l~v~~~-------------~g~~~vRa~~~v~~G~~YfEv~i~~~~~~~~vriG~a~~~~~ 329 (661)
.++|++.-.++.|.||+|+.+|+.. ..+..|.++.++.+|++||||+|.. ...+.||++.+..+
T Consensus 11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~---~~~w~vGV~~~si~ 87 (201)
T 2fbe_A 11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGT---SQVWDVGVCKESVN 87 (201)
T ss_dssp CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTT---CSEEEEEEEETTSC
T ss_pred eEEECcccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCccccCCceEEEEEeCC---CCEEEEEEeeCccC
Confidence 4678888899999999999999742 2467899999999999999999954 56899999987765
Q ss_pred CCCC--CCCcCccEEEEcCCCcEEe--CCCCcccCCCCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccchhcc
Q psy4384 330 LQTP--LGYDKFGYSWRSRKGTRFH--ECRGKHYSEGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEK 405 (661)
Q Consensus 330 l~~p--vG~d~~syg~~~~~G~~~h--~s~~~~yg~~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~e~~ 405 (661)
.... +|.+..+|++.-.+|..+. .+..... ..-.....||+.||...
T Consensus 88 Rkg~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l-~~~~~~~rVGVfLDye~---------------------------- 138 (201)
T 2fbe_A 88 RQGKIELSSEHGFLTVGCREGKVFAASTVPMTPL-WVSPQLHRVGIFLDVGM---------------------------- 138 (201)
T ss_dssp CSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEE-CCCTTCCEEEEEEETTT----------------------------
T ss_pred CCCcccccCCCCEEEEEEeCCCEEEEEcCCcccC-ccCCCCCEEEEEEEcCC----------------------------
Confidence 5433 5667778987765554332 2211111 12245789999999988
Q ss_pred chhhHHHhhcccCCCcEEEEEECC--eecccccee-ccCCceEEEEEec
Q psy4384 406 DKVTEALKRLQTLDQSQIVFYKNG--KSQGVAFQD-IYAGYYYPCVSLH 451 (661)
Q Consensus 406 d~~~~~~~~~~~~~~s~I~f~kNG--~~~G~AF~~-i~~g~yyPavSl~ 451 (661)
+.|.||-.- ..+ -.|.. -+.+.+||++++.
T Consensus 139 ---------------G~lSFY~v~~~~~i-~tF~~~~Fs~pL~P~F~~~ 171 (201)
T 2fbe_A 139 ---------------RSIAFYNVSDGCHI-YTFIEIPVCEPWRPFFAHK 171 (201)
T ss_dssp ---------------TEEEEEETTTTEEE-EEECSCCCSSCEEEEEEEE
T ss_pred ---------------CEEEEEeCCCCcee-EEEcCCCCCCCEEeEEEec
Confidence 899999642 222 24666 4678999999986
No 25
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=98.90 E-value=1.5e-08 Score=99.31 Aligned_cols=140 Identities=17% Similarity=0.197 Sum_probs=102.8
Q ss_pred ceEeCcCCCCCCeEEeCCCcEEEeC-------------CCeeEEEEeEEEeCCeEEEEEEEEeeCCCCcEEEEEeCCCCC
Q psy4384 263 HVLLALHDRAPQLRISEDRLAVTGD-------------KGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYAN 329 (661)
Q Consensus 263 ~v~~s~~dr~~~l~ls~d~l~v~~~-------------~g~~~vRa~~~v~~G~~YfEv~i~~~~~~~~vriG~a~~~~~ 329 (661)
.++|++.-.++.|.||+|+.+|+.. ..+..|.++.++.+|++||||+|.. .+.+.||++.+...
T Consensus 14 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~~---~~~w~vGV~~~s~~ 90 (191)
T 2wl1_A 14 NVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGD---KTAWILGACKTSIS 90 (191)
T ss_dssp CCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECTT---CSCEEEEEEETTCC
T ss_pred eeEECCccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccCCCEEEEEEeCC---CCEEEEEEeeCCcC
Confidence 5789999999999999999999742 2466899999999999999999854 56899999987665
Q ss_pred CCC--CCCCcCccEEEEcCCCcEE---eCCCCcccCCCCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccchhc
Q psy4384 330 LQT--PLGYDKFGYSWRSRKGTRF---HECRGKHYSEGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEE 404 (661)
Q Consensus 330 l~~--pvG~d~~syg~~~~~G~~~---h~s~~~~yg~~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~e~ 404 (661)
... .+|.+..+|++.-.+|..+ |.... .. ..-.....||+.||...
T Consensus 91 Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~-~l-~~~~~~~rVGVfLDye~--------------------------- 141 (191)
T 2wl1_A 91 RKGNMTLSPENGYWVVIMMKENEYQASSVPPT-RL-LIKEPPKRVGIFVDYRV--------------------------- 141 (191)
T ss_dssp SSSCCCCCGGGTEEEEEEEETTEEEECCSSCE-EC-CCSSCCSEEEEEEETTT---------------------------
T ss_pred CCCccccCCCCCEEEEEEeCCCEEEEEcCCCc-cC-ccccCCcEEEEEEEcCC---------------------------
Confidence 543 4677777888765434333 32211 11 11235789999999988
Q ss_pred cchhhHHHhhcccCCCcEEEEEEC--Ceecccccee-ccCCceEEEEEec
Q psy4384 405 KDKVTEALKRLQTLDQSQIVFYKN--GKSQGVAFQD-IYAGYYYPCVSLH 451 (661)
Q Consensus 405 ~d~~~~~~~~~~~~~~s~I~f~kN--G~~~G~AF~~-i~~g~yyPavSl~ 451 (661)
+.|.||-- +..+ -.|.. -+.+.+||++++.
T Consensus 142 ----------------G~lSFY~v~~~~~i-~tF~~~~Fs~pl~P~F~~~ 174 (191)
T 2wl1_A 142 ----------------GSISFYNVTARSHI-YTFASCSFSGPLQPIFSPG 174 (191)
T ss_dssp ----------------TEEEEEETTTTEEE-EEECCCCCCSCEEEEEECC
T ss_pred ----------------CEEEEEECCCCcce-EEeCCCCCCCCEEeEEEcc
Confidence 89999953 2222 24665 5678999999985
No 26
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=98.88 E-value=1.2e-08 Score=99.50 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=101.0
Q ss_pred ceEeCcCCCCCCeEEeCCCcEEEeCCCeeEEEEeEEEeCCeEEEEEEEEeeCCCCcEEEEEeCCCCCCC-------CCCC
Q psy4384 263 HVLLALHDRAPQLRISEDRLAVTGDKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYANLQ-------TPLG 335 (661)
Q Consensus 263 ~v~~s~~dr~~~l~ls~d~l~v~~~~g~~~vRa~~~v~~G~~YfEv~i~~~~~~~~vriG~a~~~~~l~-------~pvG 335 (661)
.|+|++.-.+ .|.||+|+.+|+... ...|.+..++.+|++||||+|.. .+.+.||++....... ..+|
T Consensus 13 ~vTLDp~TA~-~l~lSed~r~Vr~~~-~~~VLG~~~ftsGrHYWEVeV~~---~~~W~vGV~~~~~~r~~~~~~~~~~~~ 87 (186)
T 3uv9_A 13 DVTLATNNIS-HAVIAEDKRQVSSRA-GTGVLGSQSITSGKHYWEVDVSK---KSAWILGVCAGFQSDAMYNIEQNENYQ 87 (186)
T ss_dssp CCCCCCCSSC-CCEECTTSSCEECCC-SSCEECSSCBCSSEEEEEEECTT---CSCEEEEEESCSTTTTTTTHHHHTCCC
T ss_pred EeEeCCCCcC-CceECCCCCEEeecC-CCcCcCCCCCCCCCEEEEEEEcC---CCcEEEEEEEEEecccccccCCCcccC
Confidence 4567776655 499999999998644 45699999999999999999854 6789999997655432 3577
Q ss_pred CcCccEEEEcCCCcE---EeCCCCc-ccC------CCCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccchhcc
Q psy4384 336 YDKFGYSWRSRKGTR---FHECRGK-HYS------EGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEK 405 (661)
Q Consensus 336 ~d~~syg~~~~~G~~---~h~s~~~-~yg------~~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~e~~ 405 (661)
.+..+|++.-.+|.. +|++... ..+ ..-.....||+.||+..
T Consensus 88 ~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~---------------------------- 139 (186)
T 3uv9_A 88 PKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEA---------------------------- 139 (186)
T ss_dssp GGGTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTT----------------------------
T ss_pred CCCCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCC----------------------------
Confidence 788899887556653 3444321 111 12345789999999988
Q ss_pred chhhHHHhhcccCCCcEEEEEE--CCeeccccceec-cCCceEEEEEecCC
Q psy4384 406 DKVTEALKRLQTLDQSQIVFYK--NGKSQGVAFQDI-YAGYYYPCVSLHKN 453 (661)
Q Consensus 406 d~~~~~~~~~~~~~~s~I~f~k--NG~~~G~AF~~i-~~g~yyPavSl~~g 453 (661)
+.|.||- |...+--.|.+. +.+.+||+.++..+
T Consensus 140 ---------------G~lSFYnv~d~~~lI~tF~~~~Fs~pL~P~F~~~~~ 175 (186)
T 3uv9_A 140 ---------------CTVSFFNITNHGFLIYKFSQCSFSKPVFPYLNPRKC 175 (186)
T ss_dssp ---------------TEEEEEETTTTTEEEEEECSCCCSSCBEEEEECTTC
T ss_pred ---------------CEEEEEeCCCCceEEEEeCCcCCCCCEEeEEECCCC
Confidence 8999993 212222245442 46899999999654
No 27
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=98.86 E-value=2.5e-08 Score=97.43 Aligned_cols=141 Identities=18% Similarity=0.243 Sum_probs=103.4
Q ss_pred ceEeCcCCCCCCeEEeCCCcEEEeC-------------CCeeEEEEeEEEeCCeEEEEEEEEeeCCCCcEEEEEeCCCCC
Q psy4384 263 HVLLALHDRAPQLRISEDRLAVTGD-------------KGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYAN 329 (661)
Q Consensus 263 ~v~~s~~dr~~~l~ls~d~l~v~~~-------------~g~~~vRa~~~v~~G~~YfEv~i~~~~~~~~vriG~a~~~~~ 329 (661)
.++|++.-..+.|.||+|+.+|+.. ..+..|.++.++.+|++||||+|.. .+.+.||++.+..+
T Consensus 10 ~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~---~~~w~vGV~~~si~ 86 (188)
T 2vok_A 10 HITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQ---KEAWDLGVCRDSVQ 86 (188)
T ss_dssp CCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECTT---CSCEEEEEEETTCC
T ss_pred ceEECCccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccCCCeEEEEEecC---CceEEEEEeeCCcC
Confidence 3567888888999999999999742 2467899999999999999999954 56899999987665
Q ss_pred CC--CCCCCcCccEEEEcCCCc--EEeCCCCcccCCCCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccchhcc
Q psy4384 330 LQ--TPLGYDKFGYSWRSRKGT--RFHECRGKHYSEGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEK 405 (661)
Q Consensus 330 l~--~pvG~d~~syg~~~~~G~--~~h~s~~~~yg~~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~e~~ 405 (661)
.. ..+|.+..+|++.-.+|. .+|+.. ... ..-.....||+.||+..
T Consensus 87 Rkg~~~~~~~~~~W~l~~~~~~y~~~~~~~-~~l-~~~~~~~rVGVfLDye~---------------------------- 136 (188)
T 2vok_A 87 RKGQFSLSPENGFWTIWLWQDSYEAGTSPQ-TTL-HIQVPPCQIGIFVDYEA---------------------------- 136 (188)
T ss_dssp CSSCCCCSTTTTEEEEEEETTEEEECSSSC-EEE-CCSSCCSEEEEEEETTT----------------------------
T ss_pred CCCccccCCCCCEEEEEEECCEEEEEeCCc-cCE-ecCCCCCEEEEEEEcCC----------------------------
Confidence 44 246888899988765554 223321 111 11235789999999988
Q ss_pred chhhHHHhhcccCCCcEEEEEECCe--ecccccee-ccCCceEEEEEec
Q psy4384 406 DKVTEALKRLQTLDQSQIVFYKNGK--SQGVAFQD-IYAGYYYPCVSLH 451 (661)
Q Consensus 406 d~~~~~~~~~~~~~~s~I~f~kNG~--~~G~AF~~-i~~g~yyPavSl~ 451 (661)
+.|.||-... .+=-.|.. -+.+.+||++++.
T Consensus 137 ---------------G~lSFY~v~~~~~~I~tF~~~~Fs~pL~P~F~~~ 170 (188)
T 2vok_A 137 ---------------GVVSFYNITDHGSLIYTFSECVFAGPLRPFFNVG 170 (188)
T ss_dssp ---------------TEEEEEETTTTTEEEEEECSCCCCSCEEEEEECC
T ss_pred ---------------CEEEEEECCCCCeeeEEecCCCCCCCEEeEEEec
Confidence 8999995432 11124666 5678999999985
No 28
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=98.58 E-value=7.1e-07 Score=87.53 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=99.6
Q ss_pred ceEeCcCCCCCCeEEeCCCcEEEeCC--------------CeeEEEEeEEEeCCeEEEEEEEEeeCCCCcEEEEEeCCCC
Q psy4384 263 HVLLALHDRAPQLRISEDRLAVTGDK--------------GYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYA 328 (661)
Q Consensus 263 ~v~~s~~dr~~~l~ls~d~l~v~~~~--------------g~~~vRa~~~v~~G~~YfEv~i~~~~~~~~vriG~a~~~~ 328 (661)
.++|++.-..+.|.||+|+.+|+... .+..|.+.-++.+|++||||.|.. .+.+.||++.+..
T Consensus 13 ~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrhYWEVev~~---~~~W~lGV~~~s~ 89 (193)
T 3kb5_A 13 ELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEHYWEVDVGD---KPRWALGVIAAEA 89 (193)
T ss_dssp CCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEEEEEEECTT---CSSEEEEEEETTS
T ss_pred cEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccCCCEEEEEEeCc---CceEEEEEeeCCc
Confidence 46788888999999999999997521 356899999999999999999854 5689999998776
Q ss_pred CCCCC--CCCcCccEEEEcCCCcEE---eCCCCcc-cCCCCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccch
Q psy4384 329 NLQTP--LGYDKFGYSWRSRKGTRF---HECRGKH-YSEGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYY 402 (661)
Q Consensus 329 ~l~~p--vG~d~~syg~~~~~G~~~---h~s~~~~-yg~~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~ 402 (661)
+.... .+.+..+|++.-.+|..+ |...... ..-+-..-..||+.||...
T Consensus 90 ~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~~~~~~~~rVGVfLDye~------------------------- 144 (193)
T 3kb5_A 90 PRRGRLHAVPSQGLWLLGLREGKILEAHVEAKEPRALRSPERRPTRIGLYLSFGD------------------------- 144 (193)
T ss_dssp CCSSSCCCSGGGTEEEEEEETTTEEEECCSSSSCEECCCCSSCCSEEEEEEETTT-------------------------
T ss_pred CcCCCcCCCCCCCEEEEEEeCCCEEEEEeCCCccEEEeecCCCCCEEEEEEEcCC-------------------------
Confidence 55433 344567888765555432 3322110 1110134569999999988
Q ss_pred hccchhhHHHhhcccCCCcEEEEEECC-----eeccccceeccCCceEEEEEe
Q psy4384 403 EEKDKVTEALKRLQTLDQSQIVFYKNG-----KSQGVAFQDIYAGYYYPCVSL 450 (661)
Q Consensus 403 e~~d~~~~~~~~~~~~~~s~I~f~kNG-----~~~G~AF~~i~~g~yyPavSl 450 (661)
+.|.||-=. ..+= .|..-+.+.+||+.++
T Consensus 145 ------------------G~lSFY~v~~~~~~s~I~-tF~~~Ft~pl~P~F~~ 178 (193)
T 3kb5_A 145 ------------------GVLSFYDASDADALVPLF-AFHERLPRPVYPFFDV 178 (193)
T ss_dssp ------------------TEEEEEECCSTTCCEEEE-EECSCCCSCEEEEEEC
T ss_pred ------------------CEEEEEeCCCCCCceEEE-EeCCCCCCCeECEEEc
Confidence 899998421 2222 3666667899999987
No 29
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=3.5e-05 Score=73.85 Aligned_cols=135 Identities=15% Similarity=0.200 Sum_probs=98.4
Q ss_pred CCCCCeEEeCCCcEEEeC---CCe--eEEEEeEEEeCCeEEEEEEEEeeC--CCCcEEEEEeCC-CCCCCCC---CCCcC
Q psy4384 270 DRAPQLRISEDRLAVTGD---KGY--CMVRATNYVGHGTWYWEATIEEMP--EGSATRMGWGQE-YANLQTP---LGYDK 338 (661)
Q Consensus 270 dr~~~l~ls~d~l~v~~~---~g~--~~vRa~~~v~~G~~YfEv~i~~~~--~~~~vriG~a~~-~~~l~~p---vG~d~ 338 (661)
-+..+|.|++|+.+++.. ..| .-|.++.|++.|. -|+|+|++.. -.|++|+|+.+- -+.++.| ..-..
T Consensus 12 ~hG~nI~L~~~~~~A~R~~~~~~f~~givFS~rPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~lP~~~~~L~~ 90 (170)
T 2e63_A 12 RTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGR-VFTVRIDRKVNSWSGSIEIGVTALDPSVLDFPSSATGLKG 90 (170)
T ss_dssp CCCSSEEECSSSCEEEESCTTTCSCSCCEEEEEEECTTC-EEEEEEEEECCSSCCCCEEEEESSCTTSCCCCSSGGGCCS
T ss_pred ccCCCeEECCCCeEEEeCCCCcccCceEEEECCCCCCCC-EEEEEEEeecCCcceeEEEEEEccChhhccCCCChhhCCC
Confidence 468899999999999875 344 4578899999886 3778877643 358999999985 3444422 12233
Q ss_pred ccEEEEcCCCcEEeCC--CCcccCC---CCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccchhccchhhHHHh
Q psy4384 339 FGYSWRSRKGTRFHEC--RGKHYSE---GYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEKDKVTEALK 413 (661)
Q Consensus 339 ~syg~~~~~G~~~h~s--~~~~yg~---~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~e~~d~~~~~~~ 413 (661)
.+|.+.. ..+.+++ ..+.||. ...+||+||+.++- +
T Consensus 91 ~~Wv~~~--~~v~~ng~~~~e~~~~~l~~l~~Gd~ig~~~~~-~------------------------------------ 131 (170)
T 2e63_A 91 GSWVVSG--CSVLRDGRSVLEEYGQDLDQLGEGDRVGVERTV-A------------------------------------ 131 (170)
T ss_dssp SEEEESS--SEEEESSCEEEESCSSCGGGCCSSCCEEEEECT-T------------------------------------
T ss_pred CeEEEec--cccccCCcccchhccccccccCCCCEEEEEEcC-C------------------------------------
Confidence 5676643 2234433 2456773 56799999999852 2
Q ss_pred hcccCCCcEEEEEECCeeccccceeccCCceEEEEEecC
Q psy4384 414 RLQTLDQSQIVFYKNGKSQGVAFQDIYAGYYYPCVSLHK 452 (661)
Q Consensus 414 ~~~~~~~s~I~f~kNG~~~G~AF~~i~~g~yyPavSl~~ 452 (661)
+.+.|++||+.+|++++|+. ..+|+.|-+|.
T Consensus 132 -------G~l~~~iNg~~~g~~~~~ip-~~LwavvDvyG 162 (170)
T 2e63_A 132 -------GELRLWVNGRDCGVAATGLP-PRVWAVVDLYG 162 (170)
T ss_dssp -------SCEEEEESSCEEEEEECCCC-SCEEEEEECCT
T ss_pred -------cEEEEEECCccceeeEcCCC-CcEEEEEEccC
Confidence 78999999999999999987 58999999984
No 30
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.19 E-value=2.4e-07 Score=77.77 Aligned_cols=51 Identities=25% Similarity=0.501 Sum_probs=37.4
Q ss_pred CCccccceEecccccchhhHhhhccccCCccccceeEEEEcccCCCCCccceee
Q psy4384 3 ERNFNLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKK 56 (661)
Q Consensus 3 ~~~~~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~~g~e~~~r 56 (661)
+.+.+..||||+.|.+|||..|+.+... +......|+|..|.......+.+
T Consensus 20 ~~d~~~~MIqCd~C~~WfH~~Cvgl~~~---~~~~~~~~~C~~C~~~~~~~~~K 70 (79)
T 1wep_A 20 PYNVNHFMIECGLCQDWFHGSCVGIEEE---NAVDIDIYHCPDCEAVFGPSIMK 70 (79)
T ss_dssp SCCSSSCEEEBTTTCCEEEHHHHTCCHH---HHTTCSBBCCTTTTTTSCSCBCC
T ss_pred ccCCCCceEEcCCCCCcEEeeecCcccc---cccCCCeEECCCcccccCCCcee
Confidence 4455789999999999999999998652 22334589999998654344433
No 31
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=98.04 E-value=2.2e-05 Score=89.54 Aligned_cols=143 Identities=17% Similarity=0.259 Sum_probs=94.4
Q ss_pred ceEeCcCCCCCCeEEeCCCcEEEeCC---------------------CeeEEEEeEEEeCCeEEEEEEEEeeCCCCcEEE
Q psy4384 263 HVLLALHDRAPQLRISEDRLAVTGDK---------------------GYCMVRATNYVGHGTWYWEATIEEMPEGSATRM 321 (661)
Q Consensus 263 ~v~~s~~dr~~~l~ls~d~l~v~~~~---------------------g~~~vRa~~~v~~G~~YfEv~i~~~~~~~~vri 321 (661)
.|+|++.--+ .+.||+|+.+|+... -+..|.+.-++.+|++||||.|.+ ...+.|
T Consensus 411 ~vtldp~ta~-~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~sGrhyWEV~v~~---~~~w~~ 486 (602)
T 4b3n_A 411 DVTLATNNIS-HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITSGKHYWEVDVSK---KSAWIL 486 (602)
T ss_dssp CCCEECCSCC-SCEECTTSSEEECCCC--------------------CCCCEEESSCBSSSEEEEEEECTT---CSCEEE
T ss_pred EEEeCCCCCC-ceeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCCEEEEEEEEECC---CeeEEE
Confidence 5678887655 588999999997421 223488888999999999999854 678999
Q ss_pred EEeCCCCCC-------CCCCCCcCccEEEEcCCCcEE---eCCCCc-ccCC------CCCCCCEEEEEeeCCCCCCCCCC
Q psy4384 322 GWGQEYANL-------QTPLGYDKFGYSWRSRKGTRF---HECRGK-HYSE------GYSEGDTLGFLIHLPYRNQNSYV 384 (661)
Q Consensus 322 G~a~~~~~l-------~~pvG~d~~syg~~~~~G~~~---h~s~~~-~yg~------~~~~GDVIG~~i~l~~~~~~~~~ 384 (661)
|++...... ...++-+..+|+.+-.+|..+ |.+... ...+ .-..-..||+.||...
T Consensus 487 Gv~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~ld~~~------- 559 (602)
T 4b3n_A 487 GVCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEA------- 559 (602)
T ss_dssp EEECCCCTTTSSTHHHHCCCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEEETTT-------
T ss_pred EEeeccccccccccCCCcccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEEEecCC-------
Confidence 998643221 123455566788765566543 433221 1111 0122368999999988
Q ss_pred CCccCCccccccccccchhccchhhHHHhhcccCCCcEEEEEE--C-Ceecccccee-ccCCceEEEEEecCC
Q psy4384 385 PRTFKDKPLVKFKCHLYYEEKDKVTEALKRLQTLDQSQIVFYK--N-GKSQGVAFQD-IYAGYYYPCVSLHKN 453 (661)
Q Consensus 385 ~~~~~d~~~i~~k~~~~~e~~d~~~~~~~~~~~~~~s~I~f~k--N-G~~~G~AF~~-i~~g~yyPavSl~~g 453 (661)
+.|.||- + |..+= .|.+ -+.+.+||..++..+
T Consensus 560 ------------------------------------g~~sFy~~~~~~~~i~-tf~~~~f~~~l~P~f~~~~~ 595 (602)
T 4b3n_A 560 ------------------------------------CTVSFFNITNHGFLIY-KFSQCSFSKPVFPYLNPRKC 595 (602)
T ss_dssp ------------------------------------TEEEEEETTTTTEEEE-EECSCCCCSCBEEEEECTTC
T ss_pred ------------------------------------CEEEEEeCCCCceeeE-eCCCcCCCCCEeCeEECCCC
Confidence 8999994 2 33332 2544 346899999998654
No 32
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.92 E-value=4.9e-07 Score=75.08 Aligned_cols=54 Identities=26% Similarity=0.581 Sum_probs=36.4
Q ss_pred ccccceEecccccchhhHhhhccccCCccccceeEEEEcccCCCCCccceeeccCCh
Q psy4384 5 NFNLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKKNQAMF 61 (661)
Q Consensus 5 ~~~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~~g~e~~~r~~~~w 61 (661)
+....||||+.|.+|||.+|+++........+ .|+|..|.....+++.+.+.+|
T Consensus 20 ~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~---~~~C~~C~~~~~~~~~k~k~~~ 73 (75)
T 3kqi_A 20 DVTRFMIECDACKDWFHGSCVGVEEEEAPDID---IYHCPNCEKTHGKSTLKKKRTW 73 (75)
T ss_dssp CTTSCEEECTTTCCEEEHHHHTCCTTTGGGBS---SCCCHHHHHHHCCCCBCSCCCC
T ss_pred CCCCCEEEcCCCCCCEecccccccccccCCCC---EEECCCCcccCCCCeEeecccc
Confidence 44678999999999999999998764311122 5789999754333344444444
No 33
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.64 E-value=3e-05 Score=82.60 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=44.1
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccC--ChHHHHHHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFL--DNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~--d~~~dlm~~~E~Li~~i~ 563 (661)
-+||+||+|||+|+.+. +|+|||+|||+++++. + +.+++..+|.+++.++
T Consensus 194 iriFEiGrVFR~d~~d~-tH~pEF~qlegl~~g~~v~-f~dLKg~le~ll~~lf 245 (350)
T 1b7y_A 194 FRIVVPGRVFRFEQTDA-THEAVFHQLEGLVVGEGIA-MAHLKGAIYELAQALF 245 (350)
T ss_dssp EEEEEEEEEECCCCCCS-SCCSEEEEEEEEEEETTCC-HHHHHHHHHHHHHHHS
T ss_pred eeEEEeeeEEECCCCCC-CCCChhHEEEEEEECCCCC-HHHHHHHHHHHHHhhc
Confidence 48999999999998764 4999999999999986 5 9999999999988774
No 34
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.63 E-value=4.9e-06 Score=64.01 Aligned_cols=36 Identities=33% Similarity=0.874 Sum_probs=29.5
Q ss_pred ccceEecccccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
+..|+||+.|+.|||.+|+++.... +| -.|.|..|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~-~~----~~~~C~~C~ 50 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSN-VP----EVFVCQKCR 50 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGG-CC----SSCCCHHHH
T ss_pred CCCEEEcCCCCccccccccCCCccc-CC----CcEECcCCC
Confidence 6799999999999999999986643 33 267898886
No 35
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.53 E-value=9.9e-06 Score=65.86 Aligned_cols=37 Identities=32% Similarity=0.870 Sum_probs=30.2
Q ss_pred ccceEecccccchhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
+..||||+.|..|||.+|+++.... +| -.|+|..|..
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~-~~----~~~~C~~C~~ 66 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSN-VP----EVFVCQKCRD 66 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTS-CC----SSCCCHHHHT
T ss_pred CCCEEECCCCCccccccccCcCccc-CC----CcEECCCCCC
Confidence 5679999999999999999986643 34 2688999974
No 36
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.52 E-value=5.7e-05 Score=78.74 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=44.8
Q ss_pred cceeEEEecccccCCCCCCCChhhhhcceeeecc--CChHHHHHHHHHHHHHHHH
Q psy4384 511 LSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAF--LDNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 511 ~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~--~d~~~dlm~~~E~Li~~i~ 563 (661)
-.++||||+|||+++.+. +|+|||+|||+++++ .| +.+++..+|.|++.++
T Consensus 132 ~~riFEiG~Vfr~d~~d~-~h~~Ef~~Le~~~~g~~~d-f~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 132 PVKIICPGKVYRRDSDDA-THSHQFTQIEGLVVDKNIK-MSDLKGTLELVAKKLF 184 (294)
T ss_dssp CEEEEEEEEEECCCCCBT-TBCSEEEEEEEEEEESSCC-HHHHHHHHHHHHHHHH
T ss_pred CccEEEEcCEEecCCCCC-CCCChhhEEEEEEECCCCC-HHHHHHHHHHHHHHHh
Confidence 569999999999987654 599999999999999 56 9999999999988764
No 37
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.48 E-value=1e-05 Score=66.54 Aligned_cols=40 Identities=28% Similarity=0.683 Sum_probs=31.1
Q ss_pred ccccceEecccccchhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 5 NFNLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 5 ~~~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
+-+..||||+.|..|||..|+.+.....+| ..|+|..|..
T Consensus 26 ~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~----~~~~C~~C~~ 65 (72)
T 1wee_A 26 DDGERMLACDGCGVWHHTRCIGINNADALP----SKFLCFRCIE 65 (72)
T ss_dssp CCSSCEEECSSSCEEEETTTTTCCTTSCCC----SCCCCHHHHH
T ss_pred CCCCcEEECCCCCCccCCeeeccCccccCC----CcEECCCccC
Confidence 345689999999999999999986532233 4688999973
No 38
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=97.48 E-value=8.2e-05 Score=77.30 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=42.5
Q ss_pred cccceeEEEecccccCCCCCCCChhhhhcceeeeccCC-hHHHHHHHHHHHHHHH
Q psy4384 509 LSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLD-NIHDLCNTIEQFIKSV 562 (661)
Q Consensus 509 ~g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d-~~~dlm~~~E~Li~~i 562 (661)
.+..|+||||+|||+|..+ .+|++||+|+|+++++.+ ++.++..+++++++.+
T Consensus 153 ~~p~rlfeiG~vFR~E~~~-~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 153 PDPIKIFEIGPCYRKESDG-KEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL 206 (290)
T ss_dssp CSSEEEEEEEEEECCCSCS-SSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCEEecCCCC-CcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHc
Confidence 4668999999999999754 569999999999999854 3677777777766543
No 39
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=97.29 E-value=0.00073 Score=69.92 Aligned_cols=135 Identities=13% Similarity=0.087 Sum_probs=96.7
Q ss_pred eeeeec-cc---ceeEEEecccccCCC-CCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q psy4384 504 KLKLDL-SL---SKVYTLNPTFRAENS-KSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLTYR 578 (661)
Q Consensus 504 qL~la~-g~---~rVyeIg~~FRaE~s-~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~~~~~~~l~~~~ 578 (661)
|++|.. ++ +.+|+-.++-|.++. .+.+|.-+|++.|||..... .+..|+.+++.++.|...+..... ...
T Consensus 78 R~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~-~~R~~~~Lk~tV~~Iy~~ik~tE~----~~~ 152 (330)
T 12as_A 78 RQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGD-GERQFSTLKSTVEAIWAGIKATEA----AVS 152 (330)
T ss_dssp HHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCT-TCCSHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccc-cchHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 344443 46 899999999998775 56789999999999999987 789999999999988877755422 111
Q ss_pred hhhccccccccccccCCcccccCHHHHHHHHHHcCCCCCCCCCCchHHHHHHhhhccCceEEEEcCcccccc--cccccC
Q psy4384 579 KLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLVKYTNNVPIFIINWPKHVKP--FYMKRS 656 (661)
Q Consensus 579 ~~~~~~~~~~l~~~~~~pf~rit~~EAi~lL~~~~i~~~~g~dl~~~~E~~L~e~~~~~PvFv~~yP~~~~P--FY~k~~ 656 (661)
..+.+.+ .+..++..||.+|+.+.. +..-..+.|..+++.. .+|||++.|..++- +|..+.
T Consensus 153 ~~y~l~p------~Lp~~i~fitsqeL~~~Y---------P~lt~keRE~~i~ke~--gaVFii~IG~~L~~g~~HD~Ra 215 (330)
T 12as_A 153 EEFGLAP------FLPDQIHFVHSQELLSRY---------PDLDAKGRERAIAKDL--GAVFLVGIGGKLSDGHRHDVRA 215 (330)
T ss_dssp HHSCCCC------CSCSSCEEEEHHHHHHHS---------SSSCHHHHHHHHHHHH--SEEEEECCSSCCSSSCCSSCCC
T ss_pred HHhccCc------CCCCceEEEeHHHHHHHc---------CCCChHHHHHHHHHhh--CCEEEEecCCccCCCCcCcCcC
Confidence 2222211 245678888998887753 3334456788888764 69999998876554 777777
Q ss_pred CCCC
Q psy4384 657 GEDP 660 (661)
Q Consensus 657 ~~dp 660 (661)
||.+
T Consensus 216 PDYD 219 (330)
T 12as_A 216 PDYD 219 (330)
T ss_dssp TTTB
T ss_pred CCCC
Confidence 6643
No 40
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=97.25 E-value=0.0038 Score=59.55 Aligned_cols=132 Identities=13% Similarity=0.201 Sum_probs=92.5
Q ss_pred CCCCCeEEeCCCcEEEeCCCe--eEEEEeEEEeCCeEEEEEEEEeeC--CCCcEEEEEeCCC-CCCCCCC-CCc------
Q psy4384 270 DRAPQLRISEDRLAVTGDKGY--CMVRATNYVGHGTWYWEATIEEMP--EGSATRMGWGQEY-ANLQTPL-GYD------ 337 (661)
Q Consensus 270 dr~~~l~ls~d~l~v~~~~g~--~~vRa~~~v~~G~~YfEv~i~~~~--~~~~vriG~a~~~-~~l~~pv-G~d------ 337 (661)
-+..+|.|++|+.+++....| .-|.++.|++.|.- |+|+|++.. -.|++|||+.+-. +.++..+ -++
T Consensus 14 ~~G~nI~L~~~~~~A~R~~sf~~givFS~RPl~~~E~-~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~lP~~a~~dL~~ 92 (168)
T 2yue_A 14 VHGDNIRISRDGTLARRFESFCRAITFSARPVRINER-ICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYACPDLTN 92 (168)
T ss_dssp EECTTEEECCSSCCEEECSCSSCCEEEESSCCCSSCC-EEEEEEECCSSSSSCCEEEEESSCGGGTTTCCCSSSSSHHHH
T ss_pred ccCCCeEECCCCcEEEecccCCceEEEECCCCcCCCE-EEEEEEeecCCcceeEEEeeeecCHHHcCCCCCCcCchHHhc
Confidence 458899999999999876555 36788999998743 677777643 3589999999863 4454211 111
Q ss_pred -CccEEEEcCCCcEEeCCCCcccCCCCCCCCEEEEEeeCCCCCCCCCCCCccCCccccccccccchhccchhhHHHhhcc
Q psy4384 338 -KFGYSWRSRKGTRFHECRGKHYSEGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEKDKVTEALKRLQ 416 (661)
Q Consensus 338 -~~syg~~~~~G~~~h~s~~~~yg~~~~~GDVIG~~i~l~~~~~~~~~~~~~~d~~~i~~k~~~~~e~~d~~~~~~~~~~ 416 (661)
...|.. .....|+ ..||+||+.++ ..
T Consensus 93 ~~~~W~~----------~l~~~~~---~~g~~l~f~v~-~~--------------------------------------- 119 (168)
T 2yue_A 93 RPGFWAK----------ALHEQYC---EKDNILYYYVN-GA--------------------------------------- 119 (168)
T ss_dssp STTBCCE----------ECCSTTC---CSSCEEEEEEC-TT---------------------------------------
T ss_pred CCCEEEE----------Eeccccc---cCCCEEEEEEc-CC---------------------------------------
Confidence 123322 1222332 57999999985 23
Q ss_pred cCCCcEEEEEECCeeccccceeccC-CceEEEEEecC-CcEEEEe
Q psy4384 417 TLDQSQIVFYKNGKSQGVAFQDIYA-GYYYPCVSLHK-NCTVSVN 459 (661)
Q Consensus 417 ~~~~s~I~f~kNG~~~G~AF~~i~~-g~yyPavSl~~-g~~v~~N 459 (661)
+.+.|++||+.+|.+++++.. ..+|..|-+|. -.+|++-
T Consensus 120 ----G~l~~~iNg~~~g~~~~~V~~~~pLwavvDvyG~t~~V~il 160 (168)
T 2yue_A 120 ----GDVIYGINNEEKGVILTGIDTRSLLWTVIDIYGNCTGIEFL 160 (168)
T ss_dssp ----SEEEEEESSCEEEEEEECCCCSSCCEEEEECCSSCSEEEEE
T ss_pred ----CEEEEEECCCccEEEEcCCCCCCceEEEEEccCCeEEEEEe
Confidence 799999999999999988875 48999999985 3556553
No 41
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.24 E-value=3.1e-05 Score=61.96 Aligned_cols=39 Identities=26% Similarity=0.680 Sum_probs=30.2
Q ss_pred ccceEecccccchhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
+..|+||+.|.+|||..|+++.... ....-.|+|..|..
T Consensus 19 ~~~mI~Cd~C~~WfH~~Cvgl~~~~---~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 19 DEFWICCDLCEMWFHGKCVKITPAR---AEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCEEECSSSCCEEETTTTTCCTTG---GGGCSSCCCHHHHT
T ss_pred CCCEEEccCCCCCCCccccCcChhH---hcCCCcEECCCCcC
Confidence 4679999999999999999986532 22234688999973
No 42
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.07 E-value=4.2e-05 Score=63.42 Aligned_cols=41 Identities=27% Similarity=0.657 Sum_probs=30.2
Q ss_pred ccceEecccccchhhHhhhccccCCcc-ccceeEEEEcccCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLV-PFMMNYVFICKNCS 47 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l-~~~~~y~F~C~~C~ 47 (661)
+..|+||+.|.+|||..|+++...... ..+....|+|..|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~ 68 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCc
Confidence 357999999999999999997652100 01135678999997
No 43
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.04 E-value=6e-05 Score=57.86 Aligned_cols=38 Identities=29% Similarity=0.665 Sum_probs=28.2
Q ss_pred cccceEecc-cccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 6 FNLIELFCA-NCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 6 ~~~~~lqC~-~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
=+..|+||+ .|.+|||..|+++.... .. ...|+|..|.
T Consensus 14 ~~~~mI~Cd~~C~~WfH~~Cvgl~~~~---~~-~~~~~C~~C~ 52 (52)
T 2kgg_A 14 DKVDWVQCDGGCDEWFHQVCVGVSPEM---AE-NEDYICINCA 52 (52)
T ss_dssp TTCCEEECTTTTCCEEETTTTTCCHHH---HH-HSCCCCSCC-
T ss_pred CCCcEEEeCCCCCccCcccccCCCccc---cC-CCCEECCCCC
Confidence 356799999 99999999999976522 11 2567888884
No 44
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.87 E-value=9.3e-05 Score=60.05 Aligned_cols=41 Identities=24% Similarity=0.496 Sum_probs=29.7
Q ss_pred ccceEecc--cccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 7 NLIELFCA--NCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 7 ~~~~lqC~--~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
+-.|+||+ .|..|||..|+++...+.........|.|..|.
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 34699998 599999999999765332223333468899985
No 45
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=96.79 E-value=0.00035 Score=60.82 Aligned_cols=38 Identities=21% Similarity=0.751 Sum_probs=30.6
Q ss_pred ccceEecccccchhhHhhhccccCCccccceeEEEEcccCCCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNT 49 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~~ 49 (661)
.-.||+|+.|..|||..|++..... +|. .|.|..|.+.
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~-~p~----~w~C~~C~~~ 76 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQH-IPD----TYLCERCQPR 76 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTS-CCS----SBCCTTTSSS
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccC-CCC----CEECCCCcCC
Confidence 3579999999999999999976544 453 3889999853
No 46
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=96.64 E-value=0.0015 Score=67.77 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=38.7
Q ss_pred eeEEEecccccCCCCCCCChhhhhcceeeeccCC---hHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLD---NIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d---~~~dlm~~~E~Li~~i 562 (661)
|+|+||+|||+|..+. .|++||+|+|++....+ ++.++...++++++.+
T Consensus 151 rlfeiG~vFR~E~~~~-~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L 202 (288)
T 3dsq_A 151 RIFEIGTCYRKESQGA-QHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA 202 (288)
T ss_dssp EEEEEEEEECSCCSSS-CCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCCCC-CcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc
Confidence 8999999999999865 49999999999987752 2566666666666554
No 47
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.62 E-value=0.00025 Score=78.76 Aligned_cols=41 Identities=29% Similarity=0.660 Sum_probs=32.4
Q ss_pred ccccceEecccccchhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 5 NFNLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 5 ~~~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
+.+..|+||+.|..|||..|+++... +....-.|.|..|..
T Consensus 47 d~~~~MIqCd~C~~WfH~~Cvgl~~~---~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 47 DVNRFMIECDICKDWFHGSCVGVEEH---HAVDIDLYHCPNCAV 87 (488)
T ss_dssp CTTSCEEEBTTTCCEEEHHHHTCCGG---GGGGEEEBCCHHHHH
T ss_pred CCCCCeEEccCCCCceeeeecCcCcc---cccCCCEEECCCCcC
Confidence 34578999999999999999997652 334456789999974
No 48
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=96.60 E-value=0.00014 Score=69.68 Aligned_cols=42 Identities=17% Similarity=0.592 Sum_probs=31.3
Q ss_pred CccccceEecccccchhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 4 RNFNLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 4 ~~~~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
.+.+..|+||+.|.+|||..|++.... +.+..-.|.|..|..
T Consensus 17 ~~~~~~mi~Cd~C~~WfH~~Cv~~~~~---~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 17 EDESKFYIGCDRCQNWYHGRCVGILQS---EAELIDEYVCPQCQS 58 (174)
T ss_dssp CCTTSCEEECTTTCCEEEHHHHTCCHH---HHTTCSSCCCHHHHH
T ss_pred CCCCCCEeECCCCCchhChhhcCCchh---hccCccCeecCCCcc
Confidence 345667999999999999999986542 222234688999984
No 49
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.46 E-value=0.00013 Score=64.45 Aligned_cols=42 Identities=24% Similarity=0.679 Sum_probs=30.2
Q ss_pred ccceEecc-cccchhhHhhhccccCC--ccccceeEEEEcccCCC
Q psy4384 7 NLIELFCA-NCKCWFHESCISYQIGK--LVPFMMNYVFICKNCSN 48 (661)
Q Consensus 7 ~~~~lqC~-~C~~wfH~~C~~~~~~~--~l~~~~~y~F~C~~C~~ 48 (661)
+..|++|+ .|.+|||..|+++.... .+.-...-.|.|..|..
T Consensus 16 ~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 16 DQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp TSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 34699998 99999999999976421 11012236899999974
No 50
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.46 E-value=0.00029 Score=56.59 Aligned_cols=42 Identities=24% Similarity=0.612 Sum_probs=30.4
Q ss_pred cccceEecc-cccchhhHhhhccccCC--ccccceeEEEEcccCC
Q psy4384 6 FNLIELFCA-NCKCWFHESCISYQIGK--LVPFMMNYVFICKNCS 47 (661)
Q Consensus 6 ~~~~~lqC~-~C~~wfH~~C~~~~~~~--~l~~~~~y~F~C~~C~ 47 (661)
=...|+||+ .|.+|||..|+++.... .|.....-.|.|..|.
T Consensus 20 ~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 20 DDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp TTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 356899999 99999999999976521 1211234578898885
No 51
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=96.45 E-value=0.00079 Score=55.46 Aligned_cols=37 Identities=19% Similarity=0.616 Sum_probs=28.7
Q ss_pred ccceEecccccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
+..||+|+.|.+|||..|++..... .+- -.|.|..|.
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~-~~~---~~w~C~~C~ 66 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAP-PEE---MQWFCPKCA 66 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCC-CSS---SCCCCTTTH
T ss_pred CCCEEEcCCCCcccccccCCCCccC-CCC---CCEEChhcc
Confidence 4579999999999999999976543 221 246799997
No 52
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.35 E-value=0.00072 Score=74.75 Aligned_cols=49 Identities=22% Similarity=0.554 Sum_probs=36.3
Q ss_pred ccccceEecccccchhhHhhhccccCCccccceeEEEEcccCCC-CCccceee
Q psy4384 5 NFNLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN-TGLESFKK 56 (661)
Q Consensus 5 ~~~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~-~g~e~~~r 56 (661)
|=+..|++|+.|..|||..|+++.. -....--.|+|..|.. .|+..++|
T Consensus 53 n~~~~mI~CD~C~~WfH~~CVgi~~---~~a~~~~~y~Cp~C~~~~gps~~k~ 102 (528)
T 3pur_A 53 KNDFQWIGCDSCQTWYHFLCSGLEQ---FEYYLYEKFFCPKCVPHTGHSIRYK 102 (528)
T ss_dssp TSTTSEEECTTTCCEEEGGGTTCCG---GGTTTEEECCCTTTHHHHCSCEECC
T ss_pred CcCCCEEECCCCCcCCCCcCCCCCh---hHhcCCCeEECcCCcCCCCCcceee
Confidence 4567899999999999999999765 2334456789999984 34554433
No 53
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.32 E-value=0.00039 Score=57.87 Aligned_cols=42 Identities=19% Similarity=0.441 Sum_probs=29.8
Q ss_pred ccceEecc--cccchhhHhhhccccCCcc-ccceeEEEEcccCCC
Q psy4384 7 NLIELFCA--NCKCWFHESCISYQIGKLV-PFMMNYVFICKNCSN 48 (661)
Q Consensus 7 ~~~~lqC~--~C~~wfH~~C~~~~~~~~l-~~~~~y~F~C~~C~~ 48 (661)
+-.|+||+ .|..|||..|+.+...+.- .....-.|.|..|..
T Consensus 27 ~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 27 TDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 35899999 9999999999998653200 002234688999973
No 54
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=96.10 E-value=0.00047 Score=75.52 Aligned_cols=39 Identities=26% Similarity=0.619 Sum_probs=30.5
Q ss_pred ccceEecccccchhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
+..|+||+.|..|||..|+++... +....-.|.|..|..
T Consensus 17 ~~~MIqCD~C~~WfH~~CVgi~~~---~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 17 TRFMIECDMCQDWFHGSCVGVEEE---KAADIDLYHCPNCEV 55 (447)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCHH---HHTTEEECCCHHHHH
T ss_pred CCCeEEcCCCCcccccccCCcCcc---cccCCCEEECCCCcc
Confidence 468999999999999999997652 222235789999974
No 55
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.08 E-value=0.00058 Score=66.06 Aligned_cols=46 Identities=17% Similarity=0.582 Sum_probs=31.6
Q ss_pred cccceEecccccchhhHhhhccccC--Cccc-cceeEEEEcccCCCCCc
Q psy4384 6 FNLIELFCANCKCWFHESCISYQIG--KLVP-FMMNYVFICKNCSNTGL 51 (661)
Q Consensus 6 ~~~~~lqC~~C~~wfH~~C~~~~~~--~~l~-~~~~y~F~C~~C~~~g~ 51 (661)
....|+||+.|.+|||..|+++... ..+. ......|+|..|....+
T Consensus 17 ~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 17 YESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp TTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3557999999999999999987531 0010 01235789999985433
No 56
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.96 E-value=0.0011 Score=60.18 Aligned_cols=38 Identities=24% Similarity=0.700 Sum_probs=27.2
Q ss_pred ceEecccccchhhHhhhccccC-----CccccceeEEEEcccCCC
Q psy4384 9 IELFCANCKCWFHESCISYQIG-----KLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 9 ~~lqC~~C~~wfH~~C~~~~~~-----~~l~~~~~y~F~C~~C~~ 48 (661)
.|+||+.|..|||.+|++...- .-+|-.. .|.|..|+.
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~--~~~c~~C~~ 43 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESV--AYTCVNCTE 43 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTT--TCCSSCCTT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccc--eeeCccccc
Confidence 3999999999999999986431 1123111 578999973
No 57
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=95.92 E-value=0.0019 Score=52.77 Aligned_cols=35 Identities=31% Similarity=0.748 Sum_probs=27.4
Q ss_pred cceEeccc--cc-chhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 8 LIELFCAN--CK-CWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 8 ~~~lqC~~--C~-~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
-.||+|+. |. +|||..|+.+.. .|-. .|.|..|..
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~~---~p~g---~w~Cp~C~~ 64 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLTT---KPRG---KWFCPRCSQ 64 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCSS---CCSS---CCCCTTTSS
T ss_pred CCEeEeeCCCCCCccEecccCCcCc---CCCC---CEECCCCCc
Confidence 46999999 87 899999999765 3322 377999984
No 58
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.87 E-value=0.0045 Score=68.66 Aligned_cols=49 Identities=31% Similarity=0.514 Sum_probs=41.2
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeecc--CChHHHHHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAF--LDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~--~d~~~dlm~~~E~Li~~i 562 (661)
-|+|+||+|||+|..+. +|+|||+|+|...+. ++ +.+++..++.+++.+
T Consensus 348 iriFeiGrVFR~d~~Da-tHlpeFhQlegl~~~~~v~-f~dLKg~Le~~l~~l 398 (508)
T 3l4g_A 348 VKYFSIDRVFRNETLDA-THLAEFHQIEGVVADHGLT-LGHLMGVLREFFTKL 398 (508)
T ss_dssp EEEEEEEEEECCSCCCS-SSCSEEEEEEEEEEEESCC-HHHHHHHHHHHHHTT
T ss_pred ceEEEEccEEecCCCCC-CcCCeEEEEEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 37999999999999775 599999999998764 44 889999888887665
No 59
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=95.72 E-value=0.0012 Score=52.42 Aligned_cols=34 Identities=35% Similarity=0.801 Sum_probs=25.9
Q ss_pred ceEeccc--cc-chhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 9 IELFCAN--CK-CWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 9 ~~lqC~~--C~-~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
.||+|+. |. +|||.+|+++... |-. .|.|..|..
T Consensus 23 ~MI~CD~c~C~~~WfH~~Cvgl~~~---p~~---~w~Cp~C~~ 59 (62)
T 2g6q_A 23 EMIGCDNEQCPIEWFHFSCVSLTYK---PKG---KWYCPKCRG 59 (62)
T ss_dssp EEEECSCTTCSSCEEETGGGTCSSC---CSS---CCCCHHHHT
T ss_pred CeeeeeCCCCCcccEecccCCcCcC---CCC---CEECcCccc
Confidence 6999999 65 9999999997652 322 456888863
No 60
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.69 E-value=0.0021 Score=55.07 Aligned_cols=35 Identities=31% Similarity=0.754 Sum_probs=27.2
Q ss_pred cceEeccc--cc-chhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 8 LIELFCAN--CK-CWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 8 ~~~lqC~~--C~-~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
-.||+|+. |. +|||..|+.+... |-. .|.|..|..
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~~~---p~g---~W~Cp~C~~ 84 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLTTK---PRG---KWFCPRCSQ 84 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCSSC---CCS---SCCCTTTCC
T ss_pred CCEeEecCCCCCCCCEecccCCcCcC---CCC---CEECcCccC
Confidence 46999999 77 8999999997652 322 367999984
No 61
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=95.48 E-value=0.0018 Score=50.98 Aligned_cols=34 Identities=29% Similarity=0.731 Sum_probs=25.9
Q ss_pred cceEeccc--cc-chhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 8 LIELFCAN--CK-CWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 8 ~~~lqC~~--C~-~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
-.|++|+. |. +|||..|+++... |-. .+.|..|.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~~~---p~~---~w~Cp~C~ 56 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLTTK---PKG---KWFCPRCV 56 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSC---CSS---CCCCHHHH
T ss_pred CCeeEeeCCCCCCCCEecccCCcccC---CCC---CEECcCcc
Confidence 36999999 87 8999999997652 322 36688886
No 62
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.16 E-value=0.0059 Score=54.44 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=34.1
Q ss_pred CccccceEecccccchhhHhhhccccCCccccceeEEEEcccCCCCCc
Q psy4384 4 RNFNLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGL 51 (661)
Q Consensus 4 ~~~~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~~g~ 51 (661)
.++...|++|..|..|||..|++.....++..+..-.|.|..|.+.++
T Consensus 69 ~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~~ 116 (117)
T 4bbq_A 69 QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDS 116 (117)
T ss_dssp CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC----
T ss_pred cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCCC
Confidence 356778999999999999999997543334444455688999986443
No 63
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=95.15 E-value=0.003 Score=49.79 Aligned_cols=34 Identities=32% Similarity=0.764 Sum_probs=25.6
Q ss_pred cceEeccc--cc-chhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 8 LIELFCAN--CK-CWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 8 ~~~lqC~~--C~-~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
-.||+|+. |. +|||..|+++.. .|-. .+.|..|.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvgl~~---~p~g---~w~C~~C~ 57 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVGLTT---KPRG---KWFCPRCS 57 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSS---CCSS---CCCCHHHH
T ss_pred CCEEEeCCCCCCCceEehhcCCCCc---CCCC---CEECcCcc
Confidence 46999999 66 899999999765 2322 36688875
No 64
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=95.13 E-value=0.014 Score=61.52 Aligned_cols=48 Identities=15% Similarity=0.368 Sum_probs=40.8
Q ss_pred eeEEEecccccCCCCCCCChhhhhcceeeecc--CChHHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRLHLAEFYMIEAELAF--LDNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~--~d~~~dlm~~~E~Li~~i~ 563 (661)
++|++|+|||++ .+ .+|+|+|+++|..... ++ +.++...+|.+++.++
T Consensus 186 rifeiGrVyR~d-~d-~th~p~fhqlegl~v~~~v~-f~dLKg~Le~~l~~lf 235 (327)
T 3pco_A 186 RIIAPGRVYRND-YD-QTHTPMFHQMEGLIVDTNIS-FTNLKGTLHDFLRNFF 235 (327)
T ss_dssp CBCCEECCBCSC-CB-TTBCSBCCEEEEEEEETTCC-HHHHHHHHHHHHHHHH
T ss_pred eEEeeccEEecC-CC-cccCCcccEEEEEEECCCCC-HHHHHHHHHHHHHHHh
Confidence 899999999998 44 5699999999987763 44 9999999999988875
No 65
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.05 E-value=0.0039 Score=50.76 Aligned_cols=33 Identities=27% Similarity=0.640 Sum_probs=25.9
Q ss_pred ceEecccc---cchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 9 IELFCANC---KCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 9 ~~lqC~~C---~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
.||+|+.| .+|||..|+.+.. .|-. .|.|..|.
T Consensus 18 ~MI~CD~cdC~~~WfH~~Cvgl~~---~p~~---~w~Cp~C~ 53 (70)
T 1x4i_A 18 EMVGCDNQDCPIEWFHYGCVGLTE---APKG---KWYCPQCT 53 (70)
T ss_dssp SEECCSCTTCSCCCEEHHHHTCSS---CCSS---CCCCHHHH
T ss_pred CEeEeCCCCCCccCCcccccccCc---CCCC---CEECCCCC
Confidence 79999998 4999999999765 2322 35599997
No 66
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=94.57 E-value=0.0044 Score=52.91 Aligned_cols=33 Identities=27% Similarity=0.697 Sum_probs=26.3
Q ss_pred ceEeccccc---chhhHhhhccccCCccccceeEEEEccc-CC
Q psy4384 9 IELFCANCK---CWFHESCISYQIGKLVPFMMNYVFICKN-CS 47 (661)
Q Consensus 9 ~~lqC~~C~---~wfH~~C~~~~~~~~l~~~~~y~F~C~~-C~ 47 (661)
.||+|+.|. +|||..|+.+.. .|.. .+.|.. |.
T Consensus 38 ~MI~CD~c~C~~eWfH~~CVgl~~---~p~~---~W~Cp~cC~ 74 (90)
T 2jmi_A 38 PMVACDNPACPFEWFHYGCVGLKQ---APKG---KWYCSKDCK 74 (90)
T ss_dssp SEECCCSSSCSCSCEETTTSSCSS---CTTS---CCCSSHHHH
T ss_pred CEEEecCCCCccccCcCccCCCCc---CCCC---CccCChhhc
Confidence 599999977 999999999765 3332 466999 86
No 67
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.24 E-value=0.014 Score=44.07 Aligned_cols=37 Identities=24% Similarity=0.536 Sum_probs=27.4
Q ss_pred ccceEecccccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
...||.|+.|.+|||..|++.+... +|.. ...|..|.
T Consensus 12 ~~~ll~Cd~C~~~~H~~Cl~p~l~~-~P~g---~W~C~~C~ 48 (51)
T 1f62_A 12 DDKLILCDECNKAFHLFCLRPALYE-VPDG---EWQCPACQ 48 (51)
T ss_dssp CSCCEECTTTCCEECHHHHCTTCCS-CCSS---CCSCTTTS
T ss_pred CCCEEECCCCChhhCcccCCCCcCC-CCCC---cEECcCcc
Confidence 3479999999999999999754333 4532 34588887
No 68
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.38 E-value=0.028 Score=44.32 Aligned_cols=38 Identities=21% Similarity=0.547 Sum_probs=28.3
Q ss_pred cceEecccccchhhHhhhccccCCccccceeEEEEcccCCCC
Q psy4384 8 LIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNT 49 (661)
Q Consensus 8 ~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~~ 49 (661)
-.||.|+.|.+|||..|+..+... +|.. ...|..|...
T Consensus 21 g~ll~CD~C~~~fH~~Cl~p~l~~-~p~g---~W~C~~C~~~ 58 (61)
T 2l5u_A 21 GEIILCDTCPRAYHMVCLDPDMEK-APEG---KWSCPHCEKE 58 (61)
T ss_dssp SSEEECSSSSCEEEHHHHCTTCCS-CCCS---SCCCTTGGGG
T ss_pred CcEEECCCCChhhhhhccCCCCCC-CCCC---ceECcccccc
Confidence 379999999999999999975433 3422 2459999753
No 69
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=92.22 E-value=0.08 Score=59.06 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=41.3
Q ss_pred ceeEEEecccccCCC-CCCCChhhhhcceeeeccCC-hHHHHHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENS-KSRLHLAEFYMIEAELAFLD-NIHDLCNTIEQFIKSV 562 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s-~t~RHl~EFtmLE~e~a~~d-~~~dlm~~~E~Li~~i 562 (661)
-++|+||+|||.+.. + ..|.+||++++....+.+ ++.+++..+|.|++.+
T Consensus 206 vrLFEIG~VFr~d~~~d-~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 206 IKLFSIDRCFRREQGED-ATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEEEEEEEECCCTTCS-SSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred eeEEEEeeEEecCcccc-ccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 389999999998765 4 349999999999998842 3899999999888765
No 70
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.95 E-value=0.055 Score=43.37 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=27.2
Q ss_pred ceEecccccchhhHhhhccccCCccc-cceeEEEEcccCCC
Q psy4384 9 IELFCANCKCWFHESCISYQIGKLVP-FMMNYVFICKNCSN 48 (661)
Q Consensus 9 ~~lqC~~C~~wfH~~C~~~~~~~~l~-~~~~y~F~C~~C~~ 48 (661)
.||.|+.|.++||..|+...... +| ++ ..|..|+.
T Consensus 23 ~ll~Cd~C~~~~H~~Cl~P~l~~-~P~g~----W~C~~C~~ 58 (66)
T 2lri_C 23 DVLRCTHCAAAFHWRCHFPAGTS-RPGTG----LRCRSCSG 58 (66)
T ss_dssp TCEECSSSCCEECHHHHCTTTCC-CCSSS----CCCTTTTT
T ss_pred eEEECCCCCCceecccCCCccCc-CCCCC----EECccccC
Confidence 48999999999999999855433 44 44 45999984
No 71
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=91.80 E-value=0.031 Score=49.29 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=31.1
Q ss_pred cceEecccccchhhHhhhccccCCccccceeEEEEcccCCCCCcc
Q psy4384 8 LIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLE 52 (661)
Q Consensus 8 ~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~~g~e 52 (661)
..||+|+.|.++||..|++.+... +|....|=..|..|.. |++
T Consensus 67 ~~ll~Cd~C~~~yH~~Cl~ppl~~-~P~g~W~C~~C~~c~~-g~s 109 (111)
T 2ysm_A 67 SKMLVCDTCDKGYHTFCLQPVMKS-VPTNGWKCKNCRICIS-GPS 109 (111)
T ss_dssp TTEEECSSSCCEEEGGGSSSCCSS-CCSSCCCCHHHHCCSC-SCC
T ss_pred CCeeECCCCCcHHhHHhcCCcccc-CCCCCcCCcCCcCcCC-CCC
Confidence 479999999999999999865444 5655555556777763 443
No 72
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=90.86 E-value=0.13 Score=55.55 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=24.9
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccCCh
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDN 547 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~ 547 (661)
-|+|+|+++||+|..... +.-||+|.|+|.-..++
T Consensus 102 ~r~~~~g~vfR~E~~~~g-R~reF~q~~~e~~~~~~ 136 (420)
T 1qe0_A 102 IKLYYNGPMFRYERKQKG-RYRQFNQFGVEAIGAEN 136 (420)
T ss_dssp EEEEEEEEEECC--------CCEEEEEEEEEESCCC
T ss_pred eEEEEecCEeecCCCcCC-CcccEEEeeEEEECCCC
Confidence 488999999999976543 67899999999988763
No 73
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.63 E-value=0.16 Score=57.45 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=41.4
Q ss_pred ceeEEEecccccCCC-CCCCChhhhhcceeeeccCC-hHHHHHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENS-KSRLHLAEFYMIEAELAFLD-NIHDLCNTIEQFIKSV 562 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s-~t~RHl~EFtmLE~e~a~~d-~~~dlm~~~E~Li~~i 562 (661)
-++|+||+|||++.. +. .|.+||.+|+.-+...+ ++.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lDa-th~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 378999999998765 43 49999999999888731 3999999999998765
No 74
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.57 E-value=0.16 Score=57.46 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=41.4
Q ss_pred ceeEEEecccccCCC-CCCCChhhhhcceeeeccCC-hHHHHHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENS-KSRLHLAEFYMIEAELAFLD-NIHDLCNTIEQFIKSV 562 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s-~t~RHl~EFtmLE~e~a~~d-~~~dlm~~~E~Li~~i 562 (661)
-++|+||+|||++.. +. .|.+||.+|+.-+...+ ++.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lDa-th~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 378999999998765 43 49999999999888741 3999999999998765
No 75
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=90.57 E-value=0.2 Score=52.88 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=25.3
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccCCh
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDN 547 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~ 547 (661)
-|.|+||++||+|..+.. +.-||+|+++|.-..++
T Consensus 118 ~rl~y~g~vfR~e~p~~g-R~REF~Q~g~ei~g~~~ 152 (344)
T 1z7m_A 118 ARYSYFGKIFRKEKRHKG-RSTENYQIGIELFGESA 152 (344)
T ss_dssp EEEEEEEECCCCCC--------CCEEEEEEEESSCH
T ss_pred eEEEEECcEEccCCCCCC-CcceeEEEEEEEEcCCC
Confidence 488999999999987644 78999999999988763
No 76
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.49 E-value=0.16 Score=57.48 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=41.4
Q ss_pred ceeEEEecccccCCC-CCCCChhhhhcceeeeccCC-hHHHHHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENS-KSRLHLAEFYMIEAELAFLD-NIHDLCNTIEQFIKSV 562 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s-~t~RHl~EFtmLE~e~a~~d-~~~dlm~~~E~Li~~i 562 (661)
-++|+||+|||++.. +. .|.+||.+|+.-+...+ ++.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lDa-th~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEeccEEecCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 378999999998765 43 49999999999888741 3999999999998765
No 77
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=90.42 E-value=0.16 Score=56.64 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=41.4
Q ss_pred ceeEEEecccccCCC-CCCCChhhhhcceeeeccCC-hHHHHHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENS-KSRLHLAEFYMIEAELAFLD-NIHDLCNTIEQFIKSV 562 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s-~t~RHl~EFtmLE~e~a~~d-~~~dlm~~~E~Li~~i 562 (661)
-++|+||+|||.+.. +. .|.+||.+|+.-....+ ++.|+...+|.+++.+
T Consensus 218 vrlFEiGrVFr~D~~~d~-th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 218 LKLFSIDRCFRREQREDR-SHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEEECCCCSSCSS-SCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred eEEEEEeeEEecCCcccC-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 379999999998764 53 49999999999888742 3999999999988765
No 78
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.34 E-value=0.17 Score=57.46 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=41.4
Q ss_pred ceeEEEecccccCCC-CCCCChhhhhcceeeeccCC-hHHHHHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENS-KSRLHLAEFYMIEAELAFLD-NIHDLCNTIEQFIKSV 562 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s-~t~RHl~EFtmLE~e~a~~d-~~~dlm~~~E~Li~~i 562 (661)
-++||||+|||++.. +. .|.+||.+|+.-+...+ ++.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lDa-th~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEccCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 378999999998765 43 49999999999888741 3999999999998765
No 79
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=89.28 E-value=0.19 Score=53.99 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=33.5
Q ss_pred eeEEEecccccCCCCCCC---ChhhhhcceeeeccCChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRL---HLAEFYMIEAELAFLDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~R---Hl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i 562 (661)
|+|+||++||+|.....+ -..||+|.|+|. |.+ -+++....++++..+
T Consensus 113 r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~-f~~-~~~~~~e~~e~i~~~ 163 (401)
T 1evl_A 113 RMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCT-EEQIRDEVNGCIRLV 163 (401)
T ss_dssp EEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHHHHH
T ss_pred hhccccceecCCCCcccccccccCcEEecceEE-eCC-HHHHHHHHHHHHHHH
Confidence 889999999999962111 247999999995 665 456555555555433
No 80
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=88.82 E-value=0.39 Score=53.34 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=37.9
Q ss_pred eeEEEecccccCCCCCCC--Chhhhh-cceeeeccCChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRL--HLAEFY-MIEAELAFLDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~R--Hl~EFt-mLE~e~a~~d~~~dlm~~~E~Li~~i 562 (661)
++|+|+++||+|..+++- =.-||+ |.|.+..+++ -+++...+++++..+
T Consensus 159 r~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~-~e~a~~e~~~~l~~~ 210 (501)
T 1nj1_A 159 RFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHAT-ASEAEEQVERAVEIY 210 (501)
T ss_dssp EEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred EEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECC-HHHHHHHHHHHHHHH
Confidence 789999999999963321 234999 9999999988 778777777766544
No 81
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=88.11 E-value=0.52 Score=51.77 Aligned_cols=49 Identities=29% Similarity=0.363 Sum_probs=36.5
Q ss_pred eeEEEecccccCCCCCCC--Chhhhh-cceeeeccCChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRL--HLAEFY-MIEAELAFLDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~R--Hl~EFt-mLE~e~a~~d~~~dlm~~~E~Li~~i 562 (661)
++|+||++||+|..+++- -.-||+ |.|.+..+++ -+++...+++++..+
T Consensus 127 rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~-~~~a~~e~~~~i~~~ 178 (459)
T 1nj8_A 127 KIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHST-KEEAENQVKEAISIY 178 (459)
T ss_dssp CEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred EEEEEccEecCccCCCCCceEeeeeeccCcEEEEECC-HHHHHHHHHHHHHHH
Confidence 889999999999862211 235999 9999999987 677766655555433
No 82
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=87.61 E-value=0.51 Score=51.71 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=32.0
Q ss_pred ceeEEEecccccCCCCCCC--ChhhhhcceeeeccCChHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENSKSRL--HLAEFYMIEAELAFLDNIHDLCNTIEQF 558 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~R--Hl~EFtmLE~e~a~~d~~~dlm~~~E~L 558 (661)
-++|+|+++||+|-....- -..||+|.|+|.-..+ -.++-..+..+
T Consensus 150 ~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~-~~~ad~e~~~~ 197 (458)
T 2i4l_A 150 LNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVD-EAGARKSYNKM 197 (458)
T ss_dssp EEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESS-HHHHHHHHHHH
T ss_pred eeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECC-HHHHHHHHHHH
Confidence 3889999999999432110 3479999999998766 45554444444
No 83
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=87.46 E-value=0.39 Score=53.59 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=38.9
Q ss_pred eeEE-EecccccCCCCCC---CChhhhhcceeeeccCChHHHHHHHHHHHHHHHHHHHh
Q psy4384 513 KVYT-LNPTFRAENSKSR---LHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVL 567 (661)
Q Consensus 513 rVye-Ig~~FRaE~s~t~---RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~~~v~ 567 (661)
++|+ |++|||+| ..++ .-.-||+|.|.+. |++ -++..+..++++...+..++
T Consensus 346 rl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~-pe~s~ee~ee~i~~~~~~~l 401 (522)
T 2cja_A 346 KVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGT-KEEVLKCAEELHDRYMHIFN 401 (522)
T ss_dssp EEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEE-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeC-hHHHHHHHHHHHHHHHHHHH
Confidence 7899 99999999 4411 2346999999998 776 78888888888844444443
No 84
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=87.01 E-value=0.58 Score=51.64 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=34.8
Q ss_pred eeEEEecccccCCCC-CCCChhhhhcceeeeccCChHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSK-SRLHLAEFYMIEAELAFLDNIHDLCNTIEQFI 559 (661)
Q Consensus 513 rVyeIg~~FRaE~s~-t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li 559 (661)
++|+||++||+|..- .-.-.-||+|.|.|..+++ -+++...++.++
T Consensus 133 rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~-~~~ad~E~~~~l 179 (477)
T 1hc7_A 133 LLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHAT-REEAEEEVRRML 179 (477)
T ss_dssp EEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHH
T ss_pred eeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCC-HHHHHHHHHHHH
Confidence 889999999999541 1003469999999999998 677766666654
No 85
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.98 E-value=0.11 Score=44.33 Aligned_cols=36 Identities=25% Similarity=0.607 Sum_probs=26.9
Q ss_pred cceEecccccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 8 LIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 8 ~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
..||.|+.|.+|||..|+..+... +|-. ...|..|.
T Consensus 29 ~~ll~CD~C~~~~H~~Cl~Ppl~~-~P~g---~W~C~~C~ 64 (92)
T 2e6r_A 29 DKLLFCDGCDDNYHIFCLLPPLPE-IPRG---IWRCPKCI 64 (92)
T ss_dssp GGCEECTTTCCEECSSSSSSCCSS-CCSS---CCCCHHHH
T ss_pred CCEEEcCCCCchhccccCCCCccc-CCCC---CcCCccCc
Confidence 579999999999999999854433 4432 24588886
No 86
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=85.74 E-value=0.48 Score=52.01 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=35.1
Q ss_pred eeEEEecccccCCCCCC---C---ChhhhhcceeeeccCChHHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSR---L---HLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~---R---Hl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~ 563 (661)
++|++++|||+|..... + -.-||+|.|.+ .|+. -++..+..++++..+.
T Consensus 274 r~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~-pe~s~~~~~e~l~~~~ 328 (455)
T 2dq0_A 274 LYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSR-PEESWEWHEKIIRNAE 328 (455)
T ss_dssp EEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEEC-TTTHHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecC-HHHHHHHHHHHHHHHH
Confidence 78999999999985210 0 23499999998 5665 4677777777765443
No 87
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=85.73 E-value=0.12 Score=41.94 Aligned_cols=34 Identities=26% Similarity=0.723 Sum_probs=26.6
Q ss_pred ccceEecccccchhhHhhhccccCCccc-cceeEEEEcccCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLVP-FMMNYVFICKNCS 47 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l~-~~~~y~F~C~~C~ 47 (661)
...||.|+.|..|||..|+.... +| |++ .|..|.
T Consensus 30 ~~~ll~CD~C~~~~H~~Cl~~~~---vP~g~W----~C~~C~ 64 (71)
T 2ku3_A 30 SNVILFCDMCNLAVHQECYGVPY---IPEGQW----LCRHCL 64 (71)
T ss_dssp SSCEEECSSSCCEEEHHHHTCSS---CCSSCC----CCHHHH
T ss_pred CCCEEECCCCCCccccccCCCCc---CCCCCc----CCccCc
Confidence 45899999999999999998764 45 433 488775
No 88
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=85.64 E-value=0.49 Score=54.18 Aligned_cols=47 Identities=11% Similarity=0.295 Sum_probs=34.7
Q ss_pred eeEEEecccccCCCCCCCC----hhhhhcceeeeccCChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRLH----LAEFYMIEAELAFLDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~RH----l~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i 562 (661)
|+|+||++||+|.+.. +| .-||||.|+|. |.+ -+.+.+...+++..+
T Consensus 356 rl~~~g~~fR~E~~~~-~~GL~R~ReF~Q~d~~~-f~~-~~~~~d~~~e~i~~~ 406 (645)
T 1nyr_A 356 RIAELGTMHRYEASGA-VSGLQRVRGMTLNDSHI-FVR-PDQIKEEFKRVVNMI 406 (645)
T ss_dssp EEEEEEEEECCCCTTT-CBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHHHHH
T ss_pred EEEEeccEEecCCCcc-ccCcceeeeEEEccEEE-EcC-HHHHHHHHHHHHHHH
Confidence 8899999999999852 23 37999999998 655 466666555555443
No 89
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=85.52 E-value=0.27 Score=38.33 Aligned_cols=35 Identities=26% Similarity=0.738 Sum_probs=26.0
Q ss_pred ceEecccccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 9 IELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 9 ~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
.||.|+.|.+|||..|+..+... +|.. ...|..|.
T Consensus 16 ~ll~Cd~C~~~fH~~Cl~ppl~~-~p~g---~W~C~~C~ 50 (60)
T 2puy_A 16 QLLMCDTCSRVYHLDCLDPPLKT-IPKG---MWICPRCQ 50 (60)
T ss_dssp SCEECSSSSCEECGGGSSSCCSS-CCCS---CCCCHHHH
T ss_pred cEEEcCCCCcCEECCcCCCCcCC-CCCC---ceEChhcc
Confidence 69999999999999999854333 4422 34588886
No 90
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=85.51 E-value=0.45 Score=52.90 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=34.6
Q ss_pred eeEEEecccccCCCCCCCC----hhhhhcceeeeccCChHHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRLH----LAEFYMIEAELAFLDNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~RH----l~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~ 563 (661)
++|+||++||+|-. +|| .-||+|.|+| .|++ -++..+..++++....
T Consensus 211 rl~qig~~FR~E~~--pr~GL~R~REF~q~d~~-~f~~-~e~~~~~~~~~i~~~~ 261 (505)
T 1ati_A 211 GIAQIGKAFRNEIT--PRNFIFRVREFEQMEIE-YFVR-PGEDEYWHRYWVEERL 261 (505)
T ss_dssp EEEEEEEEEBCCSS--CCTGGGSCSEEEEEEEE-EEEC-GGGHHHHHHHHHHHHH
T ss_pred EEEEeeceeeCCCC--CCCCCCcccceEEeeEE-EEEC-HHHHHHHHHHHHHHHH
Confidence 78999999999953 233 3699999999 7877 5676666666665443
No 91
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=85.40 E-value=0.48 Score=38.26 Aligned_cols=38 Identities=26% Similarity=0.620 Sum_probs=28.0
Q ss_pred ccceEecccccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
...||.|+.|.++||..|++-+... +|-. ....|..|.
T Consensus 30 ~~~ll~CD~C~~~yH~~Cl~Ppl~~-~P~g--~~W~C~~C~ 67 (70)
T 3asl_A 30 PDKQLMCDECDMAFHIYCLDPPLSS-VPSE--DEWYCPECR 67 (70)
T ss_dssp GGGEEECTTTCCEEEGGGSSSCCSS-CCSS--SCCCCTTTS
T ss_pred CCCEEEcCCCCCceecccCCCCcCC-CCCC--CCcCCcCcc
Confidence 4589999999999999999854433 4421 245688887
No 92
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=85.18 E-value=0.76 Score=51.21 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=38.7
Q ss_pred eeEEEecccccCCCCCCC--ChhhhhcceeeeccCChHHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRL--HLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~R--Hl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~ 563 (661)
++|+|+++||+|...++= -.-||+|.|.+...++ -+++.+.+++++....
T Consensus 144 rl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~-~e~a~~e~~~~l~~~~ 195 (518)
T 3ial_A 144 KIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHAT-AEDAVSQLSDYWKVID 195 (518)
T ss_dssp EEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred EEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECC-HHHHHHHHHHHHHHHH
Confidence 789999999999533211 3459999999998787 7888888888775443
No 93
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=85.12 E-value=0.77 Score=51.22 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=38.2
Q ss_pred eeEEEecccccCCCCCCC--ChhhhhcceeeeccCChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRL--HLAEFYMIEAELAFLDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~R--Hl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i 562 (661)
|+|+++++||+|-..++= =.-||+|.|.+..|++ -++..+.++.++...
T Consensus 150 rl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~-~e~a~~E~~~~l~~~ 200 (519)
T 4hvc_A 150 KLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT-MEEAAEEVLQILDLY 200 (519)
T ss_dssp EEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred EEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecC-HHHHHHHHHHHHHHH
Confidence 789999999999543311 2259999999999998 788888888776544
No 94
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=85.11 E-value=0.76 Score=49.54 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=29.5
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccCCh
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDN 547 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~ 547 (661)
-|.|+|+++||.|..... +.-||+|.++|.-..++
T Consensus 102 ~rl~~~g~vfR~e~p~~g-R~Ref~Q~d~e~~g~~~ 136 (423)
T 1htt_A 102 QRLWYIGPMFRHERPQKG-RYRQFHQLGCEVFGLQG 136 (423)
T ss_dssp EEEEEEEEEECCCCCCSS-CCSEEEEEEEEEESCCS
T ss_pred eEEEEEcCEecCCCCCCC-ccceeEEeeEEEECCCC
Confidence 488999999999976544 67899999999987764
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=84.69 E-value=0.16 Score=43.04 Aligned_cols=36 Identities=25% Similarity=0.707 Sum_probs=27.6
Q ss_pred ccceEecccccchhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
...||.|+.|..|||..|+.... +|.. ...|..|..
T Consensus 39 ~~~ll~CD~C~~~fH~~Cl~p~~---vP~g---~W~C~~C~~ 74 (88)
T 2l43_A 39 SNVILFCDMCNLAVHQECYGVPY---IPEG---QWLCRHCLQ 74 (88)
T ss_dssp EEEEEECSSSCCCCCHHHHTCSS---CCSS---CCCCHHHHH
T ss_pred CCCEEECCCCCchhhcccCCCCc---cCCC---ceECccccC
Confidence 34899999999999999998764 4532 234888863
No 96
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.32 E-value=0.26 Score=38.66 Aligned_cols=36 Identities=22% Similarity=0.654 Sum_probs=27.1
Q ss_pred ceEecccccchhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 9 IELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 9 ~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
.||.|+.|.++||..|+...... +|.. ...|..|..
T Consensus 20 ~ll~Cd~C~~~fH~~Cl~ppl~~-~p~g---~W~C~~C~~ 55 (61)
T 1mm2_A 20 ELLCCDTCPSSYHIHCLNPPLPE-IPNG---EWLCPRCTC 55 (61)
T ss_dssp SCBCCSSSCCCBCSSSSSSCCSS-CCSS---CCCCTTTTT
T ss_pred CEEEcCCCCHHHcccccCCCcCc-CCCC---ccCChhhcC
Confidence 68999999999999999854433 4422 345999974
No 97
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=83.90 E-value=0.3 Score=38.87 Aligned_cols=36 Identities=25% Similarity=0.638 Sum_probs=26.7
Q ss_pred ceEecccccchhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 9 IELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 9 ~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
.||.|+.|.+|||..|+..+... +|-. ...|..|..
T Consensus 19 ~ll~CD~C~~~fH~~Cl~ppl~~-~P~g---~W~C~~C~~ 54 (66)
T 1xwh_A 19 ELICCDGCPRAFHLACLSPPLRE-IPSG---TWRCSSCLQ 54 (66)
T ss_dssp SCEECSSCCCEECTTTSSSCCSS-CCSS---CCCCHHHHH
T ss_pred CEEEcCCCChhhcccccCCCcCc-CCCC---CeECccccC
Confidence 69999999999999999854333 3422 345999973
No 98
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=83.79 E-value=0.64 Score=44.45 Aligned_cols=35 Identities=31% Similarity=0.642 Sum_probs=25.8
Q ss_pred eEecccccchhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 10 ELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 10 ~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
+|.|+.|.++||..|+..+... +|.. ...|..|..
T Consensus 16 ll~Cd~C~~~~H~~C~~p~l~~-~p~~---~W~C~~C~~ 50 (184)
T 3o36_A 16 LLCCEKCPKVFHLSCHVPTLTN-FPSG---EWICTFCRD 50 (184)
T ss_dssp CEECSSSSCEECTTTSSSCCSS-CCSS---CCCCTTTSC
T ss_pred eeecCCCCcccCccccCCCCCC-CCCC---CEECccccC
Confidence 8999999999999999754433 3422 245999974
No 99
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=83.78 E-value=2.6 Score=36.55 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=49.2
Q ss_pred cCChHHHHHHHhhhccccccccCCCccccccccccHHHHHhchhhccCCCccccchHHHHHHHHHhcCCCceEeec-CC-
Q psy4384 58 QAMFPQMCITAIGNLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTILRALAKETNVLFTCN-ES- 135 (661)
Q Consensus 58 ~~~w~~~~~laLynL~~~~~~~~~~k~yF~~~~dI~~fi~~~W~~L~~~~r~~~~~w~~~i~~~L~~~~~~~F~~g-~~- 135 (661)
+.+.+.++.+||-+-.. +--.+. +|+.||.+|+...-. ..+.|+..|--.||-+ ..|+-. +.
T Consensus 5 p~SY~~LI~~AI~~sp~---------~~LtL~-eIY~~I~~~fpyyr~----~~~gWqNSIRHNLSln--~~F~kv~r~~ 68 (102)
T 1vtn_C 5 PYSYISLITMAIQQAPG---------KMLTLS-EIYQWIMDLFPYYRE----NQQRWQNSIRHSLSFN--DCFVKVARSP 68 (102)
T ss_dssp SSCHHHHHHHHHHTSTT---------SCBCHH-HHHHHHHHHCGGGGS----CHHHHHHHHHHHHHHC--TTEEEECCCS
T ss_pred CCCHHHHHHHHHHhCCC---------CCCcHH-HHHHHHHHcCCcccc----CCCchhhhhhhhhhhc--cceEecCCCC
Confidence 45778888888876322 222244 999999999998763 3579999999999997 678532 21
Q ss_pred ---cc--eeeec
Q psy4384 136 ---QE--QYGLI 142 (661)
Q Consensus 136 ---~~--~w~L~ 142 (661)
.+ +|.|.
T Consensus 69 ~~~GKG~~W~l~ 80 (102)
T 1vtn_C 69 DKPGKGSYWALH 80 (102)
T ss_dssp CSSCSSCEEEEC
T ss_pred CCCCCcceEEEC
Confidence 22 88774
No 100
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=83.78 E-value=0.73 Score=49.66 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=27.7
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccCCh
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDN 547 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~ 547 (661)
-|.|+||++||.|..... +.-||+|+++|.-..++
T Consensus 104 ~r~~y~g~vfR~e~~~~g-R~Ref~Q~g~ei~G~~~ 138 (400)
T 3od1_A 104 LRLAYQSNVYRAQQNEGG-KPAEFEQLGVELIGDGT 138 (400)
T ss_dssp EEEEEEEEEECCCC---C-CCSEEEEEEEEEESCCS
T ss_pred eEEEEEcCEEeCCCCCCC-CCCccEEeEEEEECCCC
Confidence 489999999999987544 67899999999977664
No 101
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=83.35 E-value=0.77 Score=49.45 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=28.8
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccCC
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLD 546 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d 546 (661)
-|.|+|+++||+|..... +.-||+|.++|.-..+
T Consensus 102 ~rl~~~g~vfR~e~p~~g-R~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 102 VRLWMAGPMFRAERPQKG-RYRQFHQVNYEALGSE 135 (421)
T ss_pred eEEEEecCeecCCCCCCC-CcccEEEccEEEECCC
Confidence 488999999999976544 5689999999997766
No 102
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.35 E-value=0.28 Score=37.68 Aligned_cols=35 Identities=26% Similarity=0.738 Sum_probs=24.8
Q ss_pred ceEecccccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 9 IELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 9 ~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
.||.|+.|.+|||..|+..+... +|.. ...|..|.
T Consensus 20 ~ll~Cd~C~~~~H~~Cl~ppl~~-~p~g---~W~C~~C~ 54 (56)
T 2yql_A 20 QLLMCDTCSRVYHLDCLDPPLKT-IPKG---MWICPRCQ 54 (56)
T ss_dssp CCEECSSSSCEECSSSSSSCCCS-CCCS---SCCCHHHH
T ss_pred eEEEcCCCCcceECccCCCCcCC-CCCC---ceEChhhh
Confidence 68999999999999999854333 4422 23466664
No 103
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=83.22 E-value=1.1 Score=50.32 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=34.3
Q ss_pred eeEEEecccccCCCCCCCC----hhhhhcceeeeccCChHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRLH----LAEFYMIEAELAFLDNIHDLCNTIEQFIK 560 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~RH----l~EFtmLE~e~a~~d~~~dlm~~~E~Li~ 560 (661)
|+|+||++||+|... +| .-||+|.|+|.-..+ -.++...+++++.
T Consensus 131 r~~~~g~~fR~E~~~--~~Gl~R~ReF~q~d~~~f~~~-~~~~~~e~~~~~~ 179 (572)
T 2j3l_A 131 NLYQIQTKYRDEKRS--RSGLLRGREFIMKDGYSFHAD-EASLDQSYRDYEK 179 (572)
T ss_dssp EEEEEEEEECCCSSC--CTGGGSCSEEEEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred hhheecCeeccCcCc--ccCccccceeEEeeeEEEcCC-HHHHHHHHHHHHH
Confidence 889999999999973 33 379999999998776 5666666555443
No 104
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=83.19 E-value=0.84 Score=48.72 Aligned_cols=34 Identities=15% Similarity=0.037 Sum_probs=25.2
Q ss_pred ceeEEEecccccCCC------CCCCChhhhhcceeeeccCC
Q psy4384 512 SKVYTLNPTFRAENS------KSRLHLAEFYMIEAELAFLD 546 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s------~t~RHl~EFtmLE~e~a~~d 546 (661)
-|.|+||++||.|.. ... +.-||+|+++|.-..+
T Consensus 118 ~r~~y~g~vfR~e~~g~~~~~~~g-R~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 118 IRWCYCERVYRRTDDPASLSWASG-KAAESTQVGIERIGEE 157 (373)
T ss_dssp CEEEEEEEEEECC-------------CEEEEEEEEEECSSC
T ss_pred eEEEEEcceEccCCCcccccccCC-ccceeEEeeeEEECCC
Confidence 488999999999986 333 6789999999997755
No 105
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=82.64 E-value=0.77 Score=52.60 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=33.7
Q ss_pred eeEEEecccccCCCCCCC---ChhhhhcceeeeccCChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRL---HLAEFYMIEAELAFLDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~R---Hl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i 562 (661)
|+|+||++||+|.+...+ -.-||||.|++. |++ -+++...+++++..+
T Consensus 354 r~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~-~~~~~~e~~~~i~~~ 404 (642)
T 1qf6_A 354 RMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCT-EEQIRDEVNGCIRLV 404 (642)
T ss_dssp EEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHHHHH
T ss_pred EEEEeccEEecCCCccccCCceeeeEEEccEEE-EcC-HHHHHHHHHHHHHHH
Confidence 889999999999973111 246999999998 665 455555555555433
No 106
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=82.58 E-value=0.52 Score=46.06 Aligned_cols=38 Identities=29% Similarity=0.551 Sum_probs=27.9
Q ss_pred ceEecccccchhhHhhhccccCCccc-cceeEEEEcccCCCCCc
Q psy4384 9 IELFCANCKCWFHESCISYQIGKLVP-FMMNYVFICKNCSNTGL 51 (661)
Q Consensus 9 ~~lqC~~C~~wfH~~C~~~~~~~~l~-~~~~y~F~C~~C~~~g~ 51 (661)
.+|.|+.|.++||..|+..+... +| |+ ..|..|...+.
T Consensus 18 ~ll~Cd~C~~~~H~~Cl~p~l~~-~p~~~----W~C~~C~~~~~ 56 (207)
T 3u5n_A 18 DLLCCEKCPKVFHLTCHVPTLLS-FPSGD----WICTFCRDIGK 56 (207)
T ss_dssp EEEECSSSSCEECTTTSSSCCSS-CCSSC----CCCTTTSCSSS
T ss_pred ceEEcCCCCCccCCccCCCCCCC-CCCCC----EEeCceeCccc
Confidence 38999999999999999754433 34 33 55999985443
No 107
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=82.28 E-value=0.83 Score=50.21 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=26.9
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccCC
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLD 546 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d 546 (661)
-|.|+||++||+|..... +.-||+|+++|.-..+
T Consensus 131 ~r~~~~g~vfR~E~~~~g-R~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 131 KRLWYIGPMFRHERPQRG-RYRQFHQVGVEALGFA 164 (467)
T ss_dssp EEEEEEEEEECCCCC----CCSEEEEEEEEEETCC
T ss_pred EEEEEEccEEccCCCCCC-CcCceEEEEEEEEeCC
Confidence 488999999999987654 5689999999997655
No 108
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=81.77 E-value=0.94 Score=49.09 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=29.5
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccCCh
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDN 547 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~ 547 (661)
-|.|+|+++||+|..... +.-||+|.++|.-..++
T Consensus 100 ~rl~~~g~vfR~erp~~g-R~REF~Q~d~ei~g~~~ 134 (434)
T 1wu7_A 100 LRWYSFPKVWRYEEPQAG-RYREHYQFNADIFGSDS 134 (434)
T ss_dssp EEEEECCEEECCCCSCSS-CCSEEEEEEEEEESCCS
T ss_pred eEEEEEcCeecCCCCCCC-CccceEEeeEEEEcCCC
Confidence 488999999999976544 57899999999987764
No 109
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=81.32 E-value=1.6 Score=45.95 Aligned_cols=50 Identities=22% Similarity=0.163 Sum_probs=39.3
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccCChHHHHHHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~ 563 (661)
-+.-.+++|||.|.+..-..+-+|+|.|+-. |+. -+++.+..|+++..+.
T Consensus 169 lr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~t-pEqs~~e~e~l~~~ae 218 (346)
T 3mf2_A 169 LRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGT-PDDVSDFRERWMVRAQ 218 (346)
T ss_dssp EEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EES-HHHHHHHHHHHHHHHH
T ss_pred eEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeC-HHHHHHHHHHHHHHHH
Confidence 3556799999999975556777999999866 455 7888888888886654
No 110
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=80.52 E-value=0.85 Score=50.06 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=34.7
Q ss_pred eeEEEecccccCCCCC-C--CChhhhhcceeeeccCChHHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKS-R--LHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t-~--RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~ 563 (661)
|+|++|+|||+|.... + .=.-||+|.|.+. |+. -++..+.+++++..+.
T Consensus 151 rl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~-~e~~~~e~~~~i~~~~ 202 (460)
T 3uh0_A 151 RFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCT-PSQVKSEIFNSLKLID 202 (460)
T ss_dssp EEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHHHHHH
T ss_pred EEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcC-HHHHHHHHHHHHHHHH
Confidence 7799999999998741 1 1235999999996 665 4566666666654443
No 111
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=80.49 E-value=0.65 Score=51.03 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=25.0
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccCC
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLD 546 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d 546 (661)
-|.|+||++||.|..... +.-||+|+++|.-..+
T Consensus 121 ~r~~y~g~vfR~e~~~~g-r~Ref~Q~g~ei~G~~ 154 (465)
T 3net_A 121 FARYQMDVVFRGERAKDG-RFRQFRQCDIDVVGRE 154 (465)
T ss_dssp EEEEECCEEECBC-------CCEEEEEEEEEECSS
T ss_pred eEEEEeccEEecCCCCCC-CcceeEEeeEEEECCC
Confidence 388999999999987644 6789999999997755
No 112
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=80.41 E-value=0.79 Score=50.27 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=26.5
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccCCh
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDN 547 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~ 547 (661)
-|.|+||++||.|..... +.-||+|+++|.-..++
T Consensus 124 ~r~~y~g~vfR~e~~~~g-R~ReF~Q~g~ei~G~~~ 158 (456)
T 3lc0_A 124 AKWYSIPQCWRYEAITRG-RRREHYQWNMDIVGVKS 158 (456)
T ss_dssp EEEEECCEEECCCC------CCEEEEEEEEEESCCS
T ss_pred EEEEEeccEEecCCCCCC-CccceEEEEEEEEcCCC
Confidence 488999999999987644 67899999999977653
No 113
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.30 E-value=0.58 Score=38.53 Aligned_cols=38 Identities=26% Similarity=0.695 Sum_probs=27.2
Q ss_pred ccceEecccccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 7 NLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
...||.|+.|.++||..|+.-+... +|-. +...|..|.
T Consensus 38 ~~~ll~CD~C~~~yH~~Cl~Ppl~~-~P~g--~~W~C~~C~ 75 (77)
T 2e6s_A 38 PNMQLLCDECNVAYHIYCLNPPLDK-VPEE--EYWYCPSCK 75 (77)
T ss_dssp STTEEECSSSCCEEETTSSSSCCSS-CCCS--SCCCCTTTC
T ss_pred CCCEEEcCCCCccccccccCCCccC-CCCC--CCcCCcCcc
Confidence 4579999999999999999854433 4421 134588886
No 114
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=79.64 E-value=0.9 Score=46.30 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=27.6
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccCCh
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDN 547 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d~ 547 (661)
-|.|++|+|||.|.+.. -||+++++|.-..++
T Consensus 71 ~R~~y~g~vfR~e~~~~----Ref~Q~g~ei~g~~~ 102 (275)
T 1usy_A 71 IKVWYADFVYRYSGSDL----VAEYQLGLEKVPRNS 102 (275)
T ss_dssp EEEECCEEEEEEETTEE----EEEEEEEEEEESCCS
T ss_pred eEEEEeceEEecCCCCC----CeeeEeCEEEecCCC
Confidence 48899999999999764 799999999987663
No 115
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=78.94 E-value=1.5 Score=47.55 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=33.4
Q ss_pred ceeEEEecccccCCCCCC------CChhhhhcceeeeccCChHHHHHHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENSKSR------LHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~------RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~ 563 (661)
-|+|++++|||+|.+... .-..||+|.|.+. |+. -++..+..++++..+.
T Consensus 252 lrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~-pe~s~~~~~e~i~~~~ 307 (425)
T 2dq3_A 252 IYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVH-PDTSYDELEKLVKDAE 307 (425)
T ss_dssp EEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EEC-GGGHHHHHHHHHHHHH
T ss_pred eEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECC-HHHHHHHHHHHHHHHH
Confidence 378999999999985311 1235999999977 444 2456655666654443
No 116
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=77.47 E-value=0.86 Score=40.07 Aligned_cols=37 Identities=30% Similarity=0.680 Sum_probs=27.4
Q ss_pred cceEecccccchhhHhhhccccCCccccceeEEEEcccCCC
Q psy4384 8 LIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48 (661)
Q Consensus 8 ~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~~ 48 (661)
..+|.|+.|.++||..|+.-+... +|-. ...|..|.+
T Consensus 75 ~~ll~Cd~C~~~yH~~Cl~p~l~~-~P~~---~W~C~~C~~ 111 (112)
T 3v43_A 75 DNMLFCDSCDRGFHMECCDPPLTR-MPKG---MWICQICRP 111 (112)
T ss_dssp CCCEECTTTCCEECGGGCSSCCSS-CCSS---CCCCTTTSC
T ss_pred cceEEcCCCCCeeecccCCCCCCC-CCCC---CeECCCCCC
Confidence 479999999999999999754433 4433 355888863
No 117
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=77.34 E-value=1.7 Score=48.01 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=34.2
Q ss_pred eeEEEecccccCCCC----C--CCChhhhhcceeeeccCChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSK----S--RLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~----t--~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i 562 (661)
++|++++|||+|... + -.-.-||+|.|.+. |+. -++..+..++++...
T Consensus 270 r~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~-pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 270 RYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTE-PEKSWEEFDRMIGCS 323 (485)
T ss_dssp EEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EEC-GGGHHHHHHHHHHHH
T ss_pred eEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeC-HHHHHHHHHHHHHHH
Confidence 679999999999742 1 01234999999997 555 467777777776544
No 118
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=76.63 E-value=1.4 Score=48.44 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=32.8
Q ss_pred eeEEEecccccCCCCC-CC--ChhhhhcceeeeccCChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKS-RL--HLAEFYMIEAELAFLDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t-~R--Hl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i 562 (661)
|+|+||++||+|.... .- -.-||+|.|+|.-.. -++..+.+.+++..+
T Consensus 135 rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~--~~~~~de~~e~i~~~ 185 (471)
T 3a32_A 135 KVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVP--GGRVIDVVYDVFEEM 185 (471)
T ss_dssp EEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEE--GGGHHHHHHHHHHHH
T ss_pred EEeeccceeccCCCcccccceeEEEEEECCeEEEcC--hHHHHHHHHHHHHHH
Confidence 7899999999998641 10 246999999998653 345555555555433
No 119
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=76.48 E-value=2.8 Score=45.40 Aligned_cols=50 Identities=12% Similarity=0.251 Sum_probs=33.1
Q ss_pred eeEEEecccccCCCCCC--C----ChhhhhcceeeeccCChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSR--L----HLAEFYMIEAELAFLDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~--R----Hl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i 562 (661)
++|++++|||+|.+... + -.-||+|.|.+..-..+.++..+..++++..+
T Consensus 247 r~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~ 302 (421)
T 1ses_A 247 RYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 302 (421)
T ss_dssp EEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 78999999999963210 1 23599999998754431356666666665443
No 120
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=76.13 E-value=0.69 Score=40.48 Aligned_cols=24 Identities=25% Similarity=0.762 Sum_probs=20.2
Q ss_pred cceEecccccchhhHhhhccccCC
Q psy4384 8 LIELFCANCKCWFHESCISYQIGK 31 (661)
Q Consensus 8 ~~~lqC~~C~~wfH~~C~~~~~~~ 31 (661)
..||.|+.|.+.||..|+.....+
T Consensus 20 ~~ll~C~~C~~~~H~~Cl~~~~~~ 43 (111)
T 2ysm_A 20 LDQFFCTTCGQHYHGMCLDIAVTP 43 (111)
T ss_dssp TTSEECSSSCCEECTTTTTCCCCT
T ss_pred cCCeECCCCCCCcChHHhCCcccc
Confidence 467999999999999999976533
No 121
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=75.93 E-value=2.6 Score=35.95 Aligned_cols=71 Identities=11% Similarity=0.160 Sum_probs=51.3
Q ss_pred eccCChHHHHHHHhhhccccccccCCCccccccccccHHHHHhchhhccCCCccccchHHHHHHHHHhcCCCceEeecCC
Q psy4384 56 KNQAMFPQMCITAIGNLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTILRALAKETNVLFTCNES 135 (661)
Q Consensus 56 r~~~~w~~~~~laLynL~~~~~~~~~~k~yF~~~~dI~~fi~~~W~~L~~~~r~~~~~w~~~i~~~L~~~~~~~F~~g~~ 135 (661)
|=+.+.++++..||-+-. .+--.+. +|+.||.+|+..... ..+.|+..|--.||-+ ..|+-.+.
T Consensus 3 KPp~SY~~LI~~AI~~sp---------~~~ltL~-eIY~~i~~~fpyyr~----~~~gWkNSIRHNLSln--~~F~kv~~ 66 (93)
T 2a07_F 3 RPPFTYATLIRQAIMESS---------DRQLTLN-EIYSWFTRTFAYFRR----NAATWKNAVRHNLSLH--KCFVRVEN 66 (93)
T ss_dssp CCSCCHHHHHHHHHHHST---------TSCBCHH-HHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHC--TTBCCEEC
T ss_pred CCCCCHHHHHHHHHHhCC---------CCCccHH-HHHHHHHHhCCcccc----CCCccccccceeeehh--hceeecCC
Confidence 445678899999987632 2222344 999999999998753 3569999999999997 68854333
Q ss_pred cc--eeeec
Q psy4384 136 QE--QYGLI 142 (661)
Q Consensus 136 ~~--~w~L~ 142 (661)
.+ +|.|.
T Consensus 67 gkG~~W~l~ 75 (93)
T 2a07_F 67 VKGAVWTVD 75 (93)
T ss_dssp SSSEECCBC
T ss_pred CCCCeeEEC
Confidence 33 88764
No 122
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=74.86 E-value=1.1 Score=36.85 Aligned_cols=37 Identities=27% Similarity=0.643 Sum_probs=26.3
Q ss_pred cceEecccccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 8 LIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 8 ~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
..||.|+.|.++||..|+.-+... +|-.. ...|..|.
T Consensus 39 ~~ll~CD~C~~~yH~~Cl~PpL~~-~P~g~--~W~C~~C~ 75 (77)
T 3shb_A 39 DKQLMCDECDMAFHIYCLDPPLSS-VPSED--EWYCPECR 75 (77)
T ss_dssp GGEEECTTTCCEEETTTSSSCCSS-CCSSS--CCCCTTTC
T ss_pred cceeEeCCCCCccCcccCCCcccC-CCCCC--ceECcCcc
Confidence 579999999999999999854433 34221 13477775
No 123
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=74.06 E-value=3.8 Score=35.92 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=44.4
Q ss_pred ccCChHHHHHHHhhhccccccccCCCccccccccccHHHHHhchhhccCCCccccchHHHHHHHHHhcCCCceEe
Q psy4384 57 NQAMFPQMCITAIGNLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTILRALAKETNVLFT 131 (661)
Q Consensus 57 ~~~~w~~~~~laLynL~~~~~~~~~~k~yF~~~~dI~~fi~~~W~~L~~~~r~~~~~w~~~i~~~L~~~~~~~F~ 131 (661)
=+.+.+.++..||-+-. .+--.+. +|+.||.+|+..... ..+.|+..|--.||-+ ..|+
T Consensus 4 Pp~SYa~LI~~AI~~sp---------~~~LtL~-eIY~~I~~~fPyyr~----~~~gWqNSIRHNLSln--~~F~ 62 (109)
T 2hfh_A 4 PPYSYIALITMAILQSP---------QKKLTLS-GICEFISNRFPYYRE----KFPAWQNSIRHNLSLN--DCFV 62 (109)
T ss_dssp CCCCHHHHHHHHHHTCS---------SSCBCHH-HHHHHHHTTCHHHHT----TCGGGHHHHHHHHHHH--TCCB
T ss_pred CCCCHHHHHHHHHHhCC---------CCCCcHH-HHHHHHHHhcchhcc----CCcccchhhhhhhhhh--hhhh
Confidence 35678888888886522 2222344 999999999998863 3469999999999997 6885
No 124
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=73.16 E-value=0.73 Score=36.38 Aligned_cols=37 Identities=19% Similarity=0.524 Sum_probs=26.4
Q ss_pred cceEecccccchhhHhhhccccCC--ccccceeEEEEcccCC
Q psy4384 8 LIELFCANCKCWFHESCISYQIGK--LVPFMMNYVFICKNCS 47 (661)
Q Consensus 8 ~~~lqC~~C~~wfH~~C~~~~~~~--~l~~~~~y~F~C~~C~ 47 (661)
..||.|+.|.++||..|+..+... +.|. -...|..|.
T Consensus 21 ~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~---~~W~C~~C~ 59 (66)
T 2yt5_A 21 NEMVICDKCGQGYHQLCHTPHIDSSVIDSD---EKWLCRQCV 59 (66)
T ss_dssp BCEEECSSSCCEEETTTSSSCCCHHHHHSS---CCCCCHHHH
T ss_pred CCEEECCCCChHHHhhhCCCcccccccCCC---CCEECCCCc
Confidence 689999999999999999864322 1122 234488886
No 125
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=72.89 E-value=1.9 Score=46.74 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=27.4
Q ss_pred ccceeEEEecccccCCCCCCCChhhhhcceeeec
Q psy4384 510 SLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELA 543 (661)
Q Consensus 510 g~~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a 543 (661)
+..++|++|.|||.+..+++ |.|+|.++|--..
T Consensus 131 ~~~k~~~~G~VyR~D~~da~-h~n~fhQ~egv~l 163 (415)
T 3cmq_A 131 GLDAFLVVGDVYRRDQIDSQ-HYPIFHQLEAVRL 163 (415)
T ss_dssp TCSEEEEEEEEECCCCCBTT-BCSEEEEEEEEEE
T ss_pred CCCCEEEeeeEEeccchhhh-hhHHhcCCCcEEE
Confidence 34599999999999988865 9999999995443
No 126
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=71.84 E-value=3.6 Score=45.97 Aligned_cols=51 Identities=12% Similarity=0.238 Sum_probs=35.1
Q ss_pred eeEEEecccccCCCC----C--CCChhhhhcceeeeccCChHHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSK----S--RLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 513 rVyeIg~~FRaE~s~----t--~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~ 563 (661)
|+|++++|||+|... + -.-.-||+|.|.+.--.++.++..+..++++....
T Consensus 356 r~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~ 412 (536)
T 3err_A 356 RYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAE 412 (536)
T ss_dssp EEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred eEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHH
Confidence 679999999999731 1 12445999999996333322477887777775543
No 127
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=70.24 E-value=10 Score=31.69 Aligned_cols=62 Identities=11% Similarity=0.175 Sum_probs=45.5
Q ss_pred cCChHHHHHHHhhhccccccccCCCccccccccccHHHHHhchhhccCCCc-cccchHHHHHHHHHhcCCCceEe
Q psy4384 58 QAMFPQMCITAIGNLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPR-RVTQSWHLTILRALAKETNVLFT 131 (661)
Q Consensus 58 ~~~w~~~~~laLynL~~~~~~~~~~k~yF~~~~dI~~fi~~~W~~L~~~~r-~~~~~w~~~i~~~L~~~~~~~F~ 131 (661)
+.+.++|+..||-+-.. +--.+. +|+.||.+|+.....-+. .....|+..|--.||-+ ..|+
T Consensus 7 ~~SY~~LI~~Ai~~sp~---------~~ltL~-eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln--~~F~ 69 (85)
T 3bpy_A 7 NQSYAELISQAIESAPE---------KRLTLA-QIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLH--SKFI 69 (85)
T ss_dssp SCCHHHHHHHHHHHSTT---------SCBCHH-HHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHC--TTEE
T ss_pred CCCHHHHHHHHHHhCCc---------CCccHH-HHHHHHHHhCcchhcCccCccCCCcchhhhhhccHh--hhhe
Confidence 35788899888887332 223354 999999999999864221 23569999999999997 7884
No 128
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=67.83 E-value=11 Score=33.05 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=51.7
Q ss_pred ccCChHHHHHHHhhhccccccccCCCccccccccccHHHHHhchhhccCCCc-cccchHHHHHHHHHhcCCCceEeec-C
Q psy4384 57 NQAMFPQMCITAIGNLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPR-RVTQSWHLTILRALAKETNVLFTCN-E 134 (661)
Q Consensus 57 ~~~~w~~~~~laLynL~~~~~~~~~~k~yF~~~~dI~~fi~~~W~~L~~~~r-~~~~~w~~~i~~~L~~~~~~~F~~g-~ 134 (661)
-+.+++.|+..||-+-.. +--.+. +|+.||.+|+.....-.. .....|+..|--.||-+ ..|+-- +
T Consensus 25 PpySY~~LI~~AI~~sp~---------~~LtL~-eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln--~~F~Kv~r 92 (110)
T 3l2c_A 25 GNQSYAELISQAIESAPE---------KRLTLA-QIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLH--SKFIKVHN 92 (110)
T ss_dssp BSCCHHHHHHHHHHHSTT---------SCBCHH-HHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHC--TTEEEECC
T ss_pred CCCCHHHHHHHHHHhCCc---------cCcCHH-HHHHHHHHhCchhhcCccccCCCCcccchhhhccHh--hhheeCCC
Confidence 346789999999887332 223355 999999999998864211 12469999999999997 678422 2
Q ss_pred C--cc--eeeec
Q psy4384 135 S--QE--QYGLI 142 (661)
Q Consensus 135 ~--~~--~w~L~ 142 (661)
+ .+ +|.|.
T Consensus 93 ~~~GKG~~W~l~ 104 (110)
T 3l2c_A 93 EATGKSSWWMLN 104 (110)
T ss_dssp CSTTCCCEEEEC
T ss_pred CCCCCCceEEEC
Confidence 2 22 88875
No 129
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=65.86 E-value=5.2 Score=44.30 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=35.8
Q ss_pred eeEEEecccccCCC---CC--CCChhhhhcceeeeccCChHHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENS---KS--RLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 513 rVyeIg~~FRaE~s---~t--~RHl~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~ 563 (661)
++|++++|||+|.. ++ -.=.-||+|.|.+..-....++..+..++++....
T Consensus 304 rl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~ 359 (501)
T 1wle_A 304 RMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQM 359 (501)
T ss_dssp EEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 77999999999975 11 11235999999998655422678888888775543
No 130
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=65.77 E-value=2.4 Score=48.97 Aligned_cols=29 Identities=31% Similarity=0.252 Sum_probs=24.2
Q ss_pred eeEEEecccccCCCCCCCCh----hhhhcceeeec
Q psy4384 513 KVYTLNPTFRAENSKSRLHL----AEFYMIEAELA 543 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~RHl----~EFtmLE~e~a 543 (661)
++|+||++||||-+ +||- -||+|.|+|.-
T Consensus 268 ~~aqiG~~fRnEis--Pr~GLlR~REF~q~d~e~F 300 (693)
T 2zt5_A 268 AAAQIGNSFRNEIS--PRSGLIRVREFTMAEIEHF 300 (693)
T ss_dssp EEEEEEEEECCCSS--CCSGGGSCSEEEEEEEEEE
T ss_pred EEEeecceecCCCC--CCCCCccceeeEEccceEE
Confidence 67999999999964 3554 89999999873
No 131
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=65.64 E-value=6.2 Score=33.82 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=53.9
Q ss_pred cCChHHHHHHHhhhccccccccCCCccccccccccHHHHHhchhhccCCCccccchHHHHHHHHHhcCCCceEee-cCC-
Q psy4384 58 QAMFPQMCITAIGNLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTILRALAKETNVLFTC-NES- 135 (661)
Q Consensus 58 ~~~w~~~~~laLynL~~~~~~~~~~k~yF~~~~dI~~fi~~~W~~L~~~~r~~~~~w~~~i~~~L~~~~~~~F~~-g~~- 135 (661)
+.+.++++.+||-+-. .+--.+. +|+.||.+|+..... ..+.|+..|--.||-+ ..|+- .++
T Consensus 4 p~SY~~LI~~AI~~sp---------~~~ltL~-eIY~~i~~~fpyyr~----~~~gWqNSIRHNLSln--~~F~Kv~r~~ 67 (97)
T 2hdc_A 4 PYSYIALITMAILQSP---------QKKLTLS-GICEFISNRFPYYRE----KFPAWQNSIRHNLSLN--DCFVKIPREP 67 (97)
T ss_dssp CCCHHHHHHHHHHTCT---------TTCBCHH-HHHHHHHHHCHHHHH----HCSSHHHHHHHHHHHH--HCCEEECSCT
T ss_pred CCCHHHHHHHHHHhCC---------CCCCCHH-HHHHHHHHhchhhcc----CCcceehhhhhhhhhh--hheeecCCCC
Confidence 4567888888886522 2222344 999999999998763 2458999999999997 68853 222
Q ss_pred ---cc--eeeecCCCCCCCCchhHHhhhcc
Q psy4384 136 ---QE--QYGLIDKDLAHIKPNYEQMIKGG 160 (661)
Q Consensus 136 ---~~--~w~L~~~~~~~~~p~~~~~~~~g 160 (661)
.+ +|.| .|+++.|...|
T Consensus 68 ~~~gKg~~W~l--------~p~~~~~f~~g 89 (97)
T 2hdc_A 68 GNPGKGNYWTL--------DPQSEDMFDNG 89 (97)
T ss_dssp TCSSSCCEEEC--------CTTHHHHHHHS
T ss_pred CCCCCcceEEE--------CcCHHHHHhCC
Confidence 22 8877 45666655444
No 132
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=64.88 E-value=2 Score=37.87 Aligned_cols=36 Identities=25% Similarity=0.574 Sum_probs=26.1
Q ss_pred cceEecccccchhhHhhhccccCCccccceeEEEEcccCC
Q psy4384 8 LIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47 (661)
Q Consensus 8 ~~~lqC~~C~~wfH~~C~~~~~~~~l~~~~~y~F~C~~C~ 47 (661)
..||.|+.|.++||..|+..+... +|-. ...|..|.
T Consensus 71 ~~ll~Cd~C~~~yH~~Cl~ppl~~-~P~g---~W~C~~C~ 106 (114)
T 2kwj_A 71 DQLLFCDDCDRGYHMYCLNPPVAE-PPEG---SWSCHLCW 106 (114)
T ss_dssp TTEEECSSSCCEEETTTSSSCCSS-CCSS---CCCCHHHH
T ss_pred CceEEcCCCCccccccccCCCccC-CCCC---CeECcccc
Confidence 579999999999999999854433 4422 24477775
No 133
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=63.63 E-value=13 Score=32.66 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=51.6
Q ss_pred eeccCChHHHHHHHhhhccccccccCCCccccccccccHHHHHhchhhccCCCccccchHHHHHHHHHhcCCCceEee-c
Q psy4384 55 KKNQAMFPQMCITAIGNLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTILRALAKETNVLFTC-N 133 (661)
Q Consensus 55 ~r~~~~w~~~~~laLynL~~~~~~~~~~k~yF~~~~dI~~fi~~~W~~L~~~~r~~~~~w~~~i~~~L~~~~~~~F~~-g 133 (661)
.+=+.+.++++..||-+-.. +--.+. +|+.||.+|+..... ....|+..|--.||-+ ..|+- .
T Consensus 15 ~KPp~SYa~LI~~AI~~sp~---------~~LtL~-eIY~~I~~~fPyyr~----~~~gWqNSIRHNLSln--~~F~Kv~ 78 (111)
T 2c6y_A 15 SKPPYSYAQLIVQAITMAPD---------KQLTLN-GIYTHITKNYPYYRT----ADKGWQNSIRHNLSLN--RYFIKVP 78 (111)
T ss_dssp CCCSSCHHHHHHHHHHTSTT---------SCEEHH-HHHHHHHHHCTTSCT----TCHHHHHHHHHHHHHS--TTEEEEC
T ss_pred CCCCCCHHHHHHHHHHhCCC---------CCCcHH-HHHHHHHHcCCcccc----CCCeeecchhHHhhhh--hhhcccc
Confidence 44567899999999887322 222344 999999999988753 4569999999999998 67752 2
Q ss_pred C----Ccc--eeeec
Q psy4384 134 E----SQE--QYGLI 142 (661)
Q Consensus 134 ~----~~~--~w~L~ 142 (661)
+ ..+ +|.|.
T Consensus 79 r~~~~~GKG~~W~l~ 93 (111)
T 2c6y_A 79 RSQEEPGKGSFWRID 93 (111)
T ss_dssp CCTTSCCSSCEEEEC
T ss_pred CCCCCCCCcceEEeC
Confidence 2 223 88763
No 134
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=63.21 E-value=7.3 Score=35.72 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=53.3
Q ss_pred eeccCChHHHHHHHhhhccccccccCCCccccccccccHHHHHhchhhccCCCccccchHHHHHHHHHhcCCCceEeecC
Q psy4384 55 KKNQAMFPQMCITAIGNLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTILRALAKETNVLFTCNE 134 (661)
Q Consensus 55 ~r~~~~w~~~~~laLynL~~~~~~~~~~k~yF~~~~dI~~fi~~~W~~L~~~~r~~~~~w~~~i~~~L~~~~~~~F~~g~ 134 (661)
.|=+.+++.++..||-+-.- +--.+. +|+.||.+|+...... ....|+..|--.||-+ ..|+-..
T Consensus 17 ~KPpySYa~LI~~AI~~sp~---------~~LTL~-eIY~~I~~~fPyyr~~---~~~gWqNSIRHNLSln--~~F~r~~ 81 (142)
T 3g73_A 17 ERPPYSYMAMIQFAINSTER---------KRMTLK-DIYTWIEDHFPYFKHI---AKPGWKNSIRHNLSLH--DMFVRET 81 (142)
T ss_dssp SCCSSCHHHHHHHHHHTSTT---------SEECHH-HHHHHHHHHCTHHHHT---SCTTHHHHHHHHHHHC--TTEEEEE
T ss_pred CCCCCCHHHHHHHHHHhCCC---------CCcCHH-HHHHHHHHhCCCcccc---CCCCccchhhhhhhhh--hhheecC
Confidence 55667899999999977332 223355 9999999999988631 3459999999999997 7785222
Q ss_pred --Ccc--eeeecC
Q psy4384 135 --SQE--QYGLID 143 (661)
Q Consensus 135 --~~~--~w~L~~ 143 (661)
..+ +|.|..
T Consensus 82 ~~~GKg~~W~i~p 94 (142)
T 3g73_A 82 SANGKVSFWTIHP 94 (142)
T ss_dssp CTTSCCEEEEECT
T ss_pred CCCCCCceEEECc
Confidence 222 888864
No 135
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=63.18 E-value=2.1 Score=37.42 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=18.4
Q ss_pred ceEecc--cccchhhHhhhcccc
Q psy4384 9 IELFCA--NCKCWFHESCISYQI 29 (661)
Q Consensus 9 ~~lqC~--~C~~wfH~~C~~~~~ 29 (661)
.||.|+ .|.+|||..|+.+..
T Consensus 26 ~ll~CD~~~Cp~~fH~~Cl~L~~ 48 (107)
T 4gne_A 26 ELVMCDKKDCPKAYHLLCLNLTQ 48 (107)
T ss_dssp EEEECCSTTCCCEECTGGGTCSS
T ss_pred cEeEECCCCCCcccccccCcCCc
Confidence 599999 899999999998544
No 136
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=62.73 E-value=5.4 Score=43.62 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=31.2
Q ss_pred eeEEEecccc---cCCCCCCCC----hhhhhcceeeeccCChHHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFR---AENSKSRLH----LAEFYMIEAELAFLDNIHDLCNTIEQFIKSVL 563 (661)
Q Consensus 513 rVyeIg~~FR---aE~s~t~RH----l~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i~ 563 (661)
++++||++|| ||-+. || .-||+|.|.+. |++ .++..+..+.++....
T Consensus 165 ~~aqig~~fR~~~nE~s~--~~Gl~R~REF~q~E~~~-F~~-pe~~~e~~~~~~~~~~ 218 (454)
T 1g5h_A 165 GLAQIGVCFHPVSNSNQT--PSSVTRVGEKTEASLVW-FTP-TRTSSQWLDFWLRHRL 218 (454)
T ss_dssp EEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EEC-HHHHHHHHHHHHHHHH
T ss_pred EEEEeeeeccCCcccccC--CCCccccCceehhheEE-EeC-HhhHHHHHHHHHHHHH
Confidence 6899999999 68642 33 56999999995 676 7777776666655443
No 137
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=62.65 E-value=2.5 Score=40.62 Aligned_cols=35 Identities=26% Similarity=0.564 Sum_probs=26.3
Q ss_pred ceEecccccchhhHhhhccccCCccc-cceeEEEEcccCCC
Q psy4384 9 IELFCANCKCWFHESCISYQIGKLVP-FMMNYVFICKNCSN 48 (661)
Q Consensus 9 ~~lqC~~C~~wfH~~C~~~~~~~~l~-~~~~y~F~C~~C~~ 48 (661)
.+|.|+.|.+.||..|+.-+... +| |+++ |..|..
T Consensus 13 ~ll~Cd~C~~~~H~~Cl~p~l~~-~p~g~W~----C~~C~~ 48 (189)
T 2ro1_A 13 DLVMCNQCEFCFHLDCHLPALQD-VPGEEWS----CSLCHV 48 (189)
T ss_dssp SCCCCTTTCCBCCSTTSTTCCSS-CCCTTCC----TTTTSC
T ss_pred ceeECCCCCchhccccCCCCccc-CCCCCCC----CcCccC
Confidence 37889999999999999754333 33 5543 999984
No 138
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=61.56 E-value=3.8 Score=44.80 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=30.0
Q ss_pred eeEEEecccccCCC-CCCCC----hhhhhcceeeeccCChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENS-KSRLH----LAEFYMIEAELAFLDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s-~t~RH----l~EFtmLE~e~a~~d~~~dlm~~~E~Li~~i 562 (661)
++.+||+|||+|.- .+.+| .-|||+.|.+. |++ -++..+..+.++..+
T Consensus 175 ~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~-Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 175 GLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTP-PRTSNQWLDFWLRHR 227 (459)
T ss_dssp EEEEEEEEECCC----------CCCCEEEEEEEEE-EEC-GGGHHHHHHHHHHHH
T ss_pred EEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeC-hhHHHHHHHHHHHHH
Confidence 56899999999941 12223 26999999984 565 456666655555444
No 139
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=61.19 E-value=5.5 Score=43.89 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=32.3
Q ss_pred eeEEEecccccCC-CCC--C---CChhhhhcceeeeccCChHHH--HHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAEN-SKS--R---LHLAEFYMIEAELAFLDNIHD--LCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~-s~t--~---RHl~EFtmLE~e~a~~d~~~d--lm~~~E~Li~~i 562 (661)
++|++++|||+|. +.. + .-.-||+|.|.+. |+. -++ ..+..++++...
T Consensus 291 r~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~-pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 291 KYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCS-PRQEESWRHLEDMITTS 346 (484)
T ss_dssp EEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EEC-SSTTHHHHHHHHHHHHH
T ss_pred eEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeC-cchHHHHHHHHHHHHHH
Confidence 6799999999997 211 0 1223999999985 444 244 777777766544
No 140
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=60.41 E-value=7.2 Score=45.70 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=37.1
Q ss_pred eeEEEecccccCCCCCCCChhhhhcceeeecc-------------CChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRLHLAEFYMIEAELAF-------------LDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~-------------~d~~~dlm~~~E~Li~~i 562 (661)
++||||++||.++... .| .||.+|+.-... .| +.|+...+|.+++.+
T Consensus 573 rlFEiG~Vf~~d~~~~-~~-~e~~~la~l~~G~~~~~~w~~~~~~~d-F~dlKg~le~ll~~l 632 (795)
T 2rhq_B 573 RLYEIGRVFFGNGEGE-LP-DEVEYLSGILTGEYVVNAWQGKKEEID-FFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEECCCTTS-CC-EEEEEEEEEEESEEEEEGGGTEEEECC-HHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCccc-Cc-chhhEEEEEEEeccccccccCCCCCCC-HHHHHHHHHHHHHHc
Confidence 7899999999754321 36 899999876654 45 999999999998765
No 141
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=59.76 E-value=6.7 Score=43.38 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=24.2
Q ss_pred eeEEEecccccCCCCC-CCChhhhhcceeeeccC
Q psy4384 513 KVYTLNPTFRAENSKS-RLHLAEFYMIEAELAFL 545 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t-~RHl~EFtmLE~e~a~~ 545 (661)
|.|+||++||.|.... .-+.-||+++++|.-..
T Consensus 159 k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 159 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp EEEEEEEEECCCC-------CCEEEEEEEEEESC
T ss_pred eeEEEeceEeccCcccccCccceeeeeceeccCC
Confidence 7899999999997521 12567999999999764
No 142
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=59.05 E-value=5.4 Score=44.30 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=31.7
Q ss_pred eeEEEecccccCCCCC---C---CChhhhhcceeeeccCChHH--HHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKS---R---LHLAEFYMIEAELAFLDNIH--DLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t---~---RHl~EFtmLE~e~a~~d~~~--dlm~~~E~Li~~i 562 (661)
++|++++|||+|.... + .-.-||+|.|.+. |+. -+ +..+..++++..+
T Consensus 293 r~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~-pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 293 KYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSS-PHDNKSWEMFEEMITTA 348 (522)
T ss_dssp EEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EEC-SSTTHHHHHHHHHHHHH
T ss_pred eEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeC-CChHHHHHHHHHHHHHH
Confidence 6799999999998521 0 1234999999985 433 23 3666666666444
No 143
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=58.78 E-value=7.6 Score=42.03 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=24.5
Q ss_pred eeEEEecccccCCCCC-CCChhhhhcceeeeccC
Q psy4384 513 KVYTLNPTFRAENSKS-RLHLAEFYMIEAELAFL 545 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t-~RHl~EFtmLE~e~a~~ 545 (661)
|.|+||++||.|.... .-+.-||+|+++|.-..
T Consensus 106 k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 106 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp EEEEEEEEECCCC------CCSEEEEEEEEEESC
T ss_pred eeEEEecceeccCCccccCccceeeecceeccCC
Confidence 7899999999997432 12567999999998763
No 144
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=57.42 E-value=9.9 Score=32.74 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=41.5
Q ss_pred cCChHHHHHHHhhhccccccccCCCccccccccccHHHHHhchhhccCCCccccchHHHHHHHHHhcCCCceEe
Q psy4384 58 QAMFPQMCITAIGNLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTILRALAKETNVLFT 131 (661)
Q Consensus 58 ~~~w~~~~~laLynL~~~~~~~~~~k~yF~~~~dI~~fi~~~W~~L~~~~r~~~~~w~~~i~~~L~~~~~~~F~ 131 (661)
+.+.++++..||-+-. .+--.+. +|+.||.+|+..... ..+.|+..|--.||-+ ..|+
T Consensus 4 p~SY~~LI~~AI~~sp---------~~~ltL~-eIY~~i~~~fpyyr~----~~~gWqNSIRHNLSln--~~F~ 61 (100)
T 1kq8_A 4 PYSYIALITMAIRDSA---------GGRLTLA-EINEYLMGKFPFFRG----SYTGWRNSVRHNLSLN--DCFV 61 (100)
T ss_dssp ---CHHHHHHHHTTSS---------SSCBCHH-HHHHHHHHHCTTGGG----TCSCCHHHHHHHHHHH--TCCE
T ss_pred CCCHHHHHHHHHHhCC---------CCCCcHH-HHHHHHHHhCccccC----CCCceecccchheehh--heee
Confidence 3567788888887622 2222344 999999999988753 3568999999999998 6785
No 145
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=56.40 E-value=5.1 Score=38.99 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=31.3
Q ss_pred eeEEEecccccCCCCCC-----CChhhhhcceeeecc-------------CChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSR-----LHLAEFYMIEAELAF-------------LDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~-----RHl~EFtmLE~e~a~-------------~d~~~dlm~~~E~Li~~i 562 (661)
++||||+||+.++.+.. .+..|..+|-.-++. .| +.|+...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~d-f~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTS-VYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHH-HHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcC-HHHHHHHHHHHHHHh
Confidence 79999999998763211 134577777765544 23 777777777766543
No 146
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=56.11 E-value=17 Score=32.12 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=50.9
Q ss_pred ccCChHHHHHHHhhhccccccccCCCccccccccccHHHHHhchhhccCCCc-cccchHHHHHHHHHhcCCCceEeecC-
Q psy4384 57 NQAMFPQMCITAIGNLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPR-RVTQSWHLTILRALAKETNVLFTCNE- 134 (661)
Q Consensus 57 ~~~~w~~~~~laLynL~~~~~~~~~~k~yF~~~~dI~~fi~~~W~~L~~~~r-~~~~~w~~~i~~~L~~~~~~~F~~g~- 134 (661)
-+.+.++|+..||-+-. .+--.+. +|+.||.+|+.....-.. .....|+..|--.||-+ ..|+-..
T Consensus 12 Pp~SYa~LI~~AI~~sp---------~~~LTL~-eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln--~~F~Kv~~ 79 (117)
T 3coa_C 12 GNLSYADLITKAIESSA---------EKRLTLS-QIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLH--SKFIRVQN 79 (117)
T ss_dssp BSCCHHHHHHHHHHTST---------TSCBCHH-HHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHC--TTEEEECC
T ss_pred CCCCHHHHHHHHHHhCC---------CCCccHH-HHHHHHHHhCcccccCCCCcccccchhccchheecc--hhhccccc
Confidence 45688999999987632 2222344 999999999988763211 12469999999999997 7885322
Q ss_pred C--cc--eeeecC
Q psy4384 135 S--QE--QYGLID 143 (661)
Q Consensus 135 ~--~~--~w~L~~ 143 (661)
+ .+ +|.|..
T Consensus 80 ~~~GKg~~W~l~p 92 (117)
T 3coa_C 80 EGTGKSSWWMLNP 92 (117)
T ss_dssp SSTTCCCEEEECC
T ss_pred CCCCCcceEEECc
Confidence 2 12 777653
No 147
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=54.05 E-value=1.2 Score=39.16 Aligned_cols=21 Identities=29% Similarity=0.543 Sum_probs=19.0
Q ss_pred ccceEecccccchhhHhhhcc
Q psy4384 7 NLIELFCANCKCWFHESCISY 27 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~ 27 (661)
...+|.|+.|.+.||..|++.
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTC
T ss_pred chhceEhhhcCCCCCCchhcC
Confidence 458999999999999999975
No 148
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=52.06 E-value=2.6 Score=35.08 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.2
Q ss_pred ccceEecccccchhhHhhhcc
Q psy4384 7 NLIELFCANCKCWFHESCISY 27 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~ 27 (661)
...++.|..|.+-||..|++.
T Consensus 26 ~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 26 AESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp SSCCSSCSSSSSCCCHHHHHH
T ss_pred ccceeccccccccccHhhccc
Confidence 346789999999999999984
No 149
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.78 E-value=3.5 Score=34.56 Aligned_cols=36 Identities=22% Similarity=0.600 Sum_probs=26.0
Q ss_pred cceEecccccchhhHhhhccccCC---ccc-cceeEEEEcccCC
Q psy4384 8 LIELFCANCKCWFHESCISYQIGK---LVP-FMMNYVFICKNCS 47 (661)
Q Consensus 8 ~~~lqC~~C~~wfH~~C~~~~~~~---~l~-~~~~y~F~C~~C~ 47 (661)
..+|.|+.|.+.||..|+.-.... -+| |++ .|..|.
T Consensus 31 ~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W----~C~~C~ 70 (88)
T 1wev_A 31 NQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVW----YCARCT 70 (88)
T ss_dssp CCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCC----CCHHHH
T ss_pred CceEECCCCCCeEcCccCCCcccccccCCCCCCe----eCcccc
Confidence 579999999999999999854321 022 333 488886
No 150
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=47.99 E-value=16 Score=33.80 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=51.4
Q ss_pred ccCChHHHHHHHhhhccccccccCCCccccccccccHHHHHhchhhccCCC-ccccchHHHHHHHHHhcCCCceEeecCC
Q psy4384 57 NQAMFPQMCITAIGNLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTP-RRVTQSWHLTILRALAKETNVLFTCNES 135 (661)
Q Consensus 57 ~~~~w~~~~~laLynL~~~~~~~~~~k~yF~~~~dI~~fi~~~W~~L~~~~-r~~~~~w~~~i~~~L~~~~~~~F~~g~~ 135 (661)
-+.++.+|+..||-+-.. +--.+. +|+.||.+|+-....-. ....+.|+..|--.||-+ ..|+-...
T Consensus 41 Pp~SYa~LI~~AI~sSp~---------k~LTL~-eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLn--k~F~Kv~r 108 (150)
T 1e17_A 41 GNQSYAELISQAIESAPE---------KRLTLA-QIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLH--SKFIKVHN 108 (150)
T ss_dssp CSCCHHHHHHHHHHHSSS---------CCEEHH-HHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSS--TTEEEECC
T ss_pred CCCCHHHHHHHHHHhCCC---------CCccHH-HHHHHHHHhCchhccCCCCccccchhhccceeeeee--eeeEecCC
Confidence 467899999999887322 222244 99999999998875311 113569999999999987 67853322
Q ss_pred ---cc--eeeecC
Q psy4384 136 ---QE--QYGLID 143 (661)
Q Consensus 136 ---~~--~w~L~~ 143 (661)
.+ +|.|..
T Consensus 109 ~~~GKG~~W~ldp 121 (150)
T 1e17_A 109 EATGKSSWWMLNP 121 (150)
T ss_dssp TTTSSSCEEEECT
T ss_pred CCCCCcceEEECc
Confidence 12 887753
No 151
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=47.94 E-value=13 Score=42.03 Aligned_cols=49 Identities=4% Similarity=0.099 Sum_probs=35.8
Q ss_pred ceeEEEecccccCCCCCCCChhhhhcceeeeccC-ChHHHHHHHHHHHHHH
Q psy4384 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFL-DNIHDLCNTIEQFIKS 561 (661)
Q Consensus 512 ~rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~-d~~~dlm~~~E~Li~~ 561 (661)
-++||+|++||.++.. ..|.+|+.++..-.... .++.++.-.+|.++..
T Consensus 472 vrlFEiG~Vf~~d~~~-~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 472 LKLFEISDIVIKDSNT-DVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp EEEEEEEEEEEECTTS-TTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred eEEEEeeeEEecCCcc-ccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4899999999987644 35889999998866542 1377777777766544
No 152
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=47.54 E-value=12 Score=36.26 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=33.9
Q ss_pred eeEEEecccccCCCCC-----CCChhhhhcceeeecc-------------CChHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKS-----RLHLAEFYMIEAELAF-------------LDNIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t-----~RHl~EFtmLE~e~a~-------------~d~~~dlm~~~E~Li~~i 562 (661)
++||||+||+.++... ..+..|..+|-.-++. .| +.|+...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~d-f~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTS-VFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCC-HHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcC-HHHHHHHHHHHHHHh
Confidence 7899999999765221 1244677777765544 34 889988888877554
No 153
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=46.31 E-value=4.3 Score=34.18 Aligned_cols=34 Identities=26% Similarity=0.576 Sum_probs=25.7
Q ss_pred ceEecccccchhhHhhhccccCCccc-cceeEEEEcccCC
Q psy4384 9 IELFCANCKCWFHESCISYQIGKLVP-FMMNYVFICKNCS 47 (661)
Q Consensus 9 ~~lqC~~C~~wfH~~C~~~~~~~~l~-~~~~y~F~C~~C~ 47 (661)
.+|.|+.|.+.||..|+.-+... +| |++ .|..|.
T Consensus 36 ~LL~CD~C~~~fH~~Cl~PpL~~-~P~g~W----~C~~C~ 70 (88)
T 1fp0_A 36 DLVMCNQCEFCFHLDCHLPALQD-VPGEEW----SCSLCH 70 (88)
T ss_dssp CCEECTTSSCEECTTSSSTTCCC-CCSSSC----CCCSCC
T ss_pred CEEECCCCCCceecccCCCCCCC-CcCCCc----CCcccc
Confidence 58999999999999999754433 34 443 488887
No 154
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=31.91 E-value=32 Score=40.14 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=33.1
Q ss_pred eeEEEecccccCCCCCCCChhhhhcceeeeccCC-----------hHHHHHHHHHHHHHHH
Q psy4384 513 KVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLD-----------NIHDLCNTIEQFIKSV 562 (661)
Q Consensus 513 rVyeIg~~FRaE~s~t~RHl~EFtmLE~e~a~~d-----------~~~dlm~~~E~Li~~i 562 (661)
++||||++|| + .||.+|..-..... ++.|+...+|.++..+
T Consensus 569 rlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 569 LLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 8999999999 2 68888887665531 3999999999998765
No 155
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=25.64 E-value=18 Score=31.15 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=11.0
Q ss_pred ccceEecccccchh
Q psy4384 7 NLIELFCANCKCWF 20 (661)
Q Consensus 7 ~~~~lqC~~C~~wf 20 (661)
...=+||+.|.||=
T Consensus 25 ~~~WVQCD~C~KWR 38 (100)
T 2l7p_A 25 ESAWVRCDDCFKWR 38 (100)
T ss_dssp SSEEEECTTTCCEE
T ss_pred CCeEEeeCCCCccc
Confidence 34468999999994
No 156
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.99 E-value=20 Score=31.20 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.4
Q ss_pred ccceEecccccchhhHhhhccc
Q psy4384 7 NLIELFCANCKCWFHESCISYQ 28 (661)
Q Consensus 7 ~~~~lqC~~C~~wfH~~C~~~~ 28 (661)
...+|.|..|.+.||.+|++..
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCC
T ss_pred CCCCeEeCCCCCccchhhCCCh
Confidence 3589999999999999999864
No 157
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=22.54 E-value=20 Score=25.30 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=19.2
Q ss_pred cceEecccccchhhHhhhcccc
Q psy4384 8 LIELFCANCKCWFHESCISYQI 29 (661)
Q Consensus 8 ~~~lqC~~C~~wfH~~C~~~~~ 29 (661)
...|.|+.|++.|-.+|-..++
T Consensus 9 ~~yl~CE~C~~~~~~~Cp~HGP 30 (39)
T 2l9z_A 9 LFTIWCTLCDRAYPSDCPEHGP 30 (39)
T ss_dssp SCSEEEGGGTEEESSSBTTTBS
T ss_pred hhhhHHHHHhhhchhhchhcCC
Confidence 4678999999999999998766
Done!