RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4384
(661 letters)
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription,
SPRY domain, prote binding, histone methylation, RBBP5,
DPY-30, nuclear; 2.07A {Homo sapiens}
Length = 213
Score = 232 bits (594), Expect = 9e-73
Identities = 117/249 (46%), Positives = 151/249 (60%), Gaps = 38/249 (15%)
Query: 253 GWLYRTLAPSHVLLALHDRAPQLRISEDRLAVTGDKGYCMVRATNYVGHGTWYWEATIEE 312
G LYR VLLALHDRAPQL+IS+DRL V G+KGY MVRA++ V G WY+E T++E
Sbjct: 2 GDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDE 61
Query: 313 MPEGSATRMGWGQEYANLQTPLGYDKFGYSWRSRKGTRFHECRGKHYSEGYSEGDTLGFL 372
MP +A R+GW Q NLQ PLGYDKF YSWRS+KGT+FH+ GKHYS GY +GD LGF
Sbjct: 62 MPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFY 121
Query: 373 IHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEKDKVTEALKRLQTLDQSQIVFYKNGKSQ 432
I+LP + S+I+FYKNG +Q
Sbjct: 122 INLPEDT-----------------------------------ISGRGSSEIIFYKNGVNQ 146
Query: 433 GVAFQDIYAGYYYPCVSLHKNCTVSVNFGPHFKHALPTEEFPNVRGMWERSEESICEQSM 492
GVA++DI+ G Y+P +SL+K+CTVS+NFGP FK+ + R M + ++ E ++
Sbjct: 147 GVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTY---RPMSDMGWGAVVEHTL 203
Query: 493 ADVLYLTEN 501
ADVLY E
Sbjct: 204 ADVLYHVET 212
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain,
winged helix domain, binding, transcription; 2.10A {Homo
sapiens} PDB: 3s32_A
Length = 177
Score = 180 bits (456), Expect = 3e-53
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 1 GKERNFNLIELFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKKNQAM 60
R +EL C C WF +PFM NY F C C ++G F + QA
Sbjct: 11 ENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQAN 70
Query: 61 FPQMCITAIGNLM-QTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTIL 119
+MC++A+ NL Q+ ++ +P+ FSK+K+IIPFI+ +W+ MTT R +W I+
Sbjct: 71 LKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIV 130
Query: 120 RALAKETNVLFTCNESQE----------QYGLIDKDLAHIKPNYE 154
+ ++KE +V ++GL+D+DL++I P Y+
Sbjct: 131 KTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYD 175
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 165 bits (419), Expect = 7e-45
Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 497 YLTENSGKLKLD---LSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCN 553
YL++ S +L L+ L KV++L P+FRAE S++R HL EF+ +E E A++D + D+
Sbjct: 184 YLSQ-SAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMD-LWDIMK 241
Query: 554 TIEQFIKSVLNRVLESHEEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHG 613
E+ + ++ R LE ++E+ +R + T + PF R+SY A+ IL G
Sbjct: 242 VEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNT------EPPFPRISYDEAIDILQSKG 295
Query: 614 FDVNPDSGLSKQHELFLVKYTNNVPIFIINWPKHVKPFYMKRSGEDPD 661
+V L E L + + P F+ +PKH+K FYMK DP
Sbjct: 296 VNVEWGDDLGADEERVLTEEF-DRPFFVYGYPKHIKAFYMKEDPNDPR 342
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 160 bits (408), Expect = 2e-43
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 19/174 (10%)
Query: 497 YLTENSGKLKLD---LSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCN 553
+LT+ S +L L+ +L V+ + ++RAE S++R HLAE+ +EAE F+ + DL
Sbjct: 181 FLTQ-SSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFIT-LDDLME 238
Query: 554 TIEQFIKSVLNRVLESHEEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHG 613
IE+ + ++R+L E + L + PF+RM Y A+ L H
Sbjct: 239 KIEELVCDTVDRLLADEEAKKLLEHINPKFQPP-------ERPFLRMEYKDAIKWLQEHN 291
Query: 614 FDVNPDSG------LSKQHELFLVKYTNNVPIFIINWPKHVKPFYMKRSGEDPD 661
+ + +++ E F+ N PI + +P +K FYM+R +D
Sbjct: 292 VENEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDAQDNT 344
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 158 bits (403), Expect = 2e-42
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 497 YLTENSGKLKLD---LSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCN 553
YLT+ S +L L+ SL K + + ++RAE S++ HLAE+ +EAEL F+ DL N
Sbjct: 205 YLTQ-SSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFIS-FEDLLN 262
Query: 554 TIEQFIKSVLNRVLESHEEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHG 613
+E + +V++ V+ H +++ + L PF RM+Y+ A+ HG
Sbjct: 263 HLEDLVCTVIDNVMAVHGDKIRKMNPHLKLPT---------RPFKRMTYADAIKYCNDHG 313
Query: 614 -----FDVNPDSGLSKQHELFLVKYTNNVPIFIINWPKHVKPFYMKRSGEDPD 661
+S++ E + PIF+I++P +K FYM + PD
Sbjct: 314 ILNKDKPFEYGEDISEKPERQMTDEI-GCPIFMIHFPSKMKAFYMSKVPGHPD 365
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 148 bits (375), Expect = 1e-38
Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 510 SLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLES 569
+VY + P FRAENS + H+ EF ++ E+AF ++ H++ +T+ + + + + +
Sbjct: 243 DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKR 302
Query: 570 HEEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELF 629
E+ RK + + + D +R++Y + +L G ++ LS ++E F
Sbjct: 303 FAHEIELVRKQYPVE---EFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKF 359
Query: 630 L---VKYTNNVPIFIIN-WPKHVKPFYMKRSGEDPD 661
L V+ + +I++ +P ++PFY +P
Sbjct: 360 LGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPK 395
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 148 bits (375), Expect = 3e-38
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Query: 510 SLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLES 569
KV+ + P FRAENS +R HL EF ++ E+ ++N H+ + +E+ + + + +
Sbjct: 309 DFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKR 368
Query: 570 HEEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELF 629
+EL RK ++ PF+R++Y A+ +L G + + E+
Sbjct: 369 FPDELKVIRKQYPFEDLI------YRPFLRLTYKEAIEMLRASGETIGDYDDFTTPQEVK 422
Query: 630 LVKY----TNNVPIFIINWPKHVKPFYMKRSGEDPD 661
L + N + +P ++PFY +DP+
Sbjct: 423 LGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPN 458
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 144 bits (365), Expect = 1e-37
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 511 LSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESH 570
L +VY + P FRAE + HL E + I++E+AF+++ ++ + +E+ + +N V E +
Sbjct: 203 LDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHN 262
Query: 571 EEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFL 630
+EL +L+ PF R+SY A+ IL G ++ + + E L
Sbjct: 263 AKELDILNF--------ELEEP-KLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLL 313
Query: 631 VKY----TNNVPIFIINWPKHVKPFYMKRSGEDPD 661
KY N F+ +P KPFY+ + P+
Sbjct: 314 GKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPE 348
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 144 bits (365), Expect = 2e-37
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 510 SLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLES 569
+ +V+ + P +RAE S + HLAEF ++ E+AF D +D+ +E+ + +++ + E
Sbjct: 198 VVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADY-NDVMQLLEKILHNIVKTIKEE 256
Query: 570 HEEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELF 629
+EEL P R+ Y+ A+ IL G+++ +
Sbjct: 257 GKEELKILNYEPPEVK---------IPIKRLKYTEAIEILRSKGYNIKFGDDIGTPELRI 307
Query: 630 LVKYTNNVPIFIINWPKHVKPFYMKRSGEDPD 661
L + FI++WP +PFY K E+P+
Sbjct: 308 LNEELKEDLYFIVDWPSDARPFYTKSKSENPE 339
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on
protein structural and functional analyses; 2.00A {Homo
sapiens}
Length = 171
Score = 132 bits (333), Expect = 5e-36
Identities = 28/202 (13%), Positives = 59/202 (29%), Gaps = 43/202 (21%)
Query: 270 DRAPQLRISEDRLAVT---GDKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQE 326
+ I D ++ A+ + + Y+E +I + +G +
Sbjct: 4 GSSGFKHILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQ 63
Query: 327 YANLQTPLGYDKFGYSWRSRKGTRFHEC-RGKHYSEGYSEGDTLGFLIHLPYRNQNSYVP 385
Y +L G+ ++ + G ++ +G+ + + GD +G I +
Sbjct: 64 YYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFD------ 117
Query: 386 RTFKDKPLVKFKCHLYYEEKDKVTEALKRLQTLDQSQIVFYKNGKSQGVAFQDIYAGYYY 445
+ +QI F KNGK G + +
Sbjct: 118 --------------------------------VQTAQIFFTKNGKRVGSTIMPMSPDGLF 145
Query: 446 PCVSLHK-NCTVSVNFGPHFKH 466
P V +H V ++
Sbjct: 146 PAVGMHSLGEEVRLHLNAELSG 167
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 136 bits (345), Expect = 6e-35
Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 16/156 (10%)
Query: 510 SLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLES 569
+VY + P +R E + HL E+ ++ E+ F+ + DL E + +L L +
Sbjct: 189 VFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNT 248
Query: 570 HEEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELF 629
+E+ R++++ A IL + LS++ E
Sbjct: 249 AGDEIRLLGATWPSFP---------QDIPRLTHAEAKRIL-KEELGYPVGQDLSEEAERL 298
Query: 630 LVKY----TNNVPIFIINWPKHVKPFYMKRSGEDPD 661
L +Y + +F+ +P+ V+PFY E+
Sbjct: 299 LGEYAKERWGSDWLFVTRYPRSVRPFYTYP--EEDG 332
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 120 bits (304), Expect = 1e-30
Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 47/171 (27%)
Query: 497 YLTENSGKL----KLDLSLSKVYTLNPTFRAENSKS--RLHLAEFYMIEAELAFLDNIHD 550
LT S L + + L K++ L+P R E+ + H EF ++ E+ + D
Sbjct: 71 RLTH-SMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK-MED 128
Query: 551 LCNTIEQFIKSVLNRVLESHEEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILT 610
+ IE+ + + + E E F YS +
Sbjct: 129 IMRLIERLVYGLFRKAEEWTGREF-----------------PKTKRFEVFEYSEVLEEF- 170
Query: 611 RHGFDVNPDSGLSKQHELFLVKYTNNVPIFIINWPKHVKPFYMKRSGEDPD 661
G D E+ P +IIN P + FY + E
Sbjct: 171 --GSD------EKASQEM-------EEPFWIINIP---REFYDR---EVDG 200
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription
regulation, transcription; 1.79A {Homo sapiens} PDB:
3f2o_A 2fnj_A 2v24_A 2ihs_A
Length = 212
Score = 101 bits (252), Expect = 1e-24
Identities = 35/253 (13%), Positives = 69/253 (27%), Gaps = 71/253 (28%)
Query: 227 LAEPDPHAPFRQEFDESTETAGKPIPGWLYRTLAPSHVLLALHDRAPQLRISEDRLAVT- 285
L D P R + + L + +DR+ + + ED +
Sbjct: 5 LQGLDYCKPTRLDLLLDMPPVSYDVQ--LLHSWNN-------NDRSLNVFVKEDDKLIFH 55
Query: 286 ---GDKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYANLQ-----TPLGYD 337
+ +R G W+ T G+ +G A L T +G +
Sbjct: 56 RHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNN 115
Query: 338 KFGYSWRSRKGTRFHECRGKH---------YSEGYSEGDTLGFLIHLPYRNQNSYVPRTF 388
+ W + +H+ + + E + D+ + +
Sbjct: 116 HESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDM------------- 162
Query: 389 KDKPLVKFKCHLYYEEKDKVTEALKRLQTLDQSQIVFYKNGKSQGVAFQDIYAGYYYPCV 448
D + F +G+ GVAF+ + YP V
Sbjct: 163 ------------------------------DDGTLSFIVDGQYMGVAFRGLKGKKLYPVV 192
Query: 449 SL-HKNCTVSVNF 460
S +C + + +
Sbjct: 193 SAVWGHCEIRMRY 205
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus,
apoptosis, UBL conjugation pathwayc, CL transcription
regulation, transcription, phosphoprotein; 1.80A {Homo
sapiens} PDB: 3ek9_A
Length = 217
Score = 99.8 bits (248), Expect = 6e-24
Identities = 39/256 (15%), Positives = 67/256 (26%), Gaps = 69/256 (26%)
Query: 233 HAPFRQEFDESTETAG-KPIPGWLYRTLAPSHVLLAL--------HDRAPQLRISEDRLA 283
H D TE + +P L L+ L D + + + E L
Sbjct: 4 HHHHSSGVDLGTENLYFQSMPEGLEELLSAPPPDLGAQRRHGWNPKDCSENIEVKEGGLY 63
Query: 284 VT---GDKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYANLQTP-----LG 335
+ R G WE + G+ +G A LQT LG
Sbjct: 64 FERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALLG 123
Query: 336 YDKFGYSWRSRKGTRFHECRGKH--------YSEGYSEGDTLGFLIHLPYRNQNSYVPRT 387
+ + W +G +H+ +G E + L ++ +
Sbjct: 124 SNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDM------------ 171
Query: 388 FKDKPLVKFKCHLYYEEKDKVTEALKRLQTLDQSQIVFYKNGKSQGVAFQDIYAGYYYPC 447
++ + + G G AF+ + YP
Sbjct: 172 -------------------------------EEGTLGYAIGGTYLGPAFRGLKGRTLYPA 200
Query: 448 VSL-HKNCTVSVNFGP 462
VS C V + +
Sbjct: 201 VSAVWGQCQVRIRYLG 216
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR
{Mus musculus} SCOP: b.29.1.22
Length = 226
Score = 95.2 bits (236), Expect = 2e-22
Identities = 38/247 (15%), Positives = 68/247 (27%), Gaps = 62/247 (25%)
Query: 243 STETAGKPIPGWLYRTLAPSHVLLAL------------------HDRAPQLRISEDRLAV 284
S+ P LY +P L L D + + + E L
Sbjct: 2 SSARQSTPTSQALYSDFSPPEGLEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGGLCF 61
Query: 285 TGD---KGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYANLQTP-----LGY 336
+ VR G WE + G+ +G A LQ LG
Sbjct: 62 ERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGS 121
Query: 337 DKFGYSWRSRKGTRFHECRGKHYSEGYSEGDTLGFLIHLPYRNQNSYVPRTFKDKPLVKF 396
+ + W +G +H+ +G Y ++
Sbjct: 122 NSESWGWDIGRGKLYHQSKGLEA---------------------PQYPAGPQGEQ----- 155
Query: 397 KCHLYYEEKDKVTEALKRLQTLDQSQIVFYKNGKSQGVAFQDIYAGYYYPCVS-LHKNCT 455
+++ L +++ + + G G AF+ + YP VS + C
Sbjct: 156 -----LVVPERLLVVLD----MEEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQ 206
Query: 456 VSVNFGP 462
V + +
Sbjct: 207 VRIRYMG 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 1e-08
Identities = 85/690 (12%), Positives = 181/690 (26%), Gaps = 207/690 (30%)
Query: 20 FHESCISYQIGKLVP-FMMNYV--FICKNCSNTGLESFKKNQAMFPQMCITAIGNLMQTS 76
F YQ ++ F +V F CK+ + K + I +++ +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE----------IDHIIMSK 58
Query: 77 IKEGNPRFTF----SKEKEII------------PFIEAHWDGMTTTPRRVTQSWHLTILR 120
F SK++E++ F+ + P +T+ +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------ 112
Query: 121 ALAKETNVLFTCNESQEQYGL-IDKDLAHIKPNYEQMIKGGHIKVTDMGIQSSGSNK--- 176
++ + L+ N+ +Y + + ++ ++ ++ + + GS K
Sbjct: 113 --IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL----GSGKTWV 166
Query: 177 ------GRGAKRKMPGETGV----VSKRGRGAGGDAAVPKLPAHGYPLDHPFNKDGYRYI 226
+ KM + + + + L Y +D +
Sbjct: 167 ALDVCLSYKVQCKMDF--KIFWLNLKNCNSP---ETVLEMLQKLLYQIDPNWT------- 214
Query: 227 LAEPDPHAPFRQEFDESTETAGKPIPGWLYRTLAPSHVLLALHD-------RA--PQLRI 277
+ D + + + + Y + LL L + A +I
Sbjct: 215 -SRSDHSSNIKLRIHSIQAELRRLLKSKPYE-----NCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 278 SEDRLAVTGDKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQ--EYANLQT--- 332
L T K T+++ +++ +Y + +
Sbjct: 269 ----LLTTRFKQ-----VTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 333 --------PLGYDKFGYSWRSRKGTRFHECRGKHYSEGYSEGDTLGFLIHLPYRNQNSYV 384
P S R ++ + D L +I
Sbjct: 319 PREVLTTNPRRLSIIAESIRD------GLATWDNWK--HVNCDKLTTIIESSLNVLEPAE 370
Query: 385 PRT-FKD------------KPLVKFKCHLYYEEKDKVTEALKRLQTLDQSQIVFYKNGKS 431
R F L + + V L + ++ K K
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-------KQPKE 423
Query: 432 QGVAFQDIYAGYYYPC---VSLHKNCTVSVN----------------------FGPHFKH 466
++ IY +LH++ N G H K+
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 467 ALPTEEFPNVRGMWERSEESICEQSMADVLYLTEN--SGKLKLD-LSLSKVYTLNPTFRA 523
E R +++L K++ D + + ++ T
Sbjct: 484 IEHPERMTLFR-----------------MVFLDFRFLEQKIRHDSTAWNASGSILNT--- 523
Query: 524 ENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHEEELLT--YRKLI 581
L +FY I D E+ + ++L+ L EE L+ Y L+
Sbjct: 524 ------LQQLKFY--------KPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLL 568
Query: 582 NLANITDLQCIHDNPFIRMSYSAAVTILTR 611
+A L ++ I + A + R
Sbjct: 569 RIA----LM--AEDEAI---FEEAHKQVQR 589
Score = 51.4 bits (122), Expect = 9e-07
Identities = 62/444 (13%), Positives = 119/444 (26%), Gaps = 152/444 (34%)
Query: 210 HGYPLDHPFNKDGYRY--ILAEPDPHAPFRQEFDESTETAGKPIPGWLYRTLAPSHV--L 265
H + +D + Y+Y IL F FD K + L+ + +
Sbjct: 3 HHHHMDFETGEHQYQYKDIL--SVFEDAFVDNFD------CKDVQDMPKSILSKEEIDHI 54
Query: 266 LALHDRAPQLRISEDRLAVTGDKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQ 325
+ D RL +W T+ E +
Sbjct: 55 IMSKDAVSGTL----RL----------------------FW--TLLSKQEEMVQKF---- 82
Query: 326 EYANLQTPLGYDKFGYSWRSRKGTRFH-ECRGKHYSEGYSEGDTLGFLIHLPYRNQNSYV 384
++ L + Y + + E R + R
Sbjct: 83 ----VEEVLRIN---YKFLM---SPIKTEQRQPS----------------MMTRMYIEQR 116
Query: 385 PRTFKDKPLVKFKCHLYYEEK-DKVTEALKRLQTLDQSQIVFY---KNGKSQGVAFQDIY 440
R + D + K ++ + K+ +AL L+ ++ +GK+
Sbjct: 117 DRLYNDNQVFA-KYNVSRLQPYLKLRQALLELR--PAKNVLIDGVLGSGKT--------- 164
Query: 441 AGYYYPCVSLHKNCTVSVNFGPHFKHALPTEEFPNVRGMW-----ERSEESICEQSMADV 495
+ + V + + + F W S E++ E + +
Sbjct: 165 --------WV----ALDVCLSYKVQCKMDFKIF------WLNLKNCNSPETVLEM-LQKL 205
Query: 496 LYLTENSGKLKLDLSLSKVYTLNPTFRAENSKSRL-HLAEFYMIEAELAFLDNIHDLCNT 554
LY + + + D ++ N R + ++ L L + E L L N+ +
Sbjct: 206 LYQIDPNWTSRSD------HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KA 258
Query: 555 IEQF-IKSVLNRVLESHEEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHG 613
F + ++ LLT R +TD T H
Sbjct: 259 WNAFNLSC---KI-------LLTTRF----KQVTD---------------FLSAATTTHI 289
Query: 614 FDVNPDSGLSKQH--ELFLVKYTN 635
+ L+ L L KY +
Sbjct: 290 SLDHHSMTLTPDEVKSLLL-KYLD 312
Score = 35.2 bits (80), Expect = 0.086
Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 35/140 (25%)
Query: 531 HLAEFYMIEAELAFLDNIHDL---------CNTIEQFIKSVLNR-----VLESHEEELLT 576
H +F E + + D + C ++ KS+L++ ++ S + T
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 577 YRKLINLANITDLQCIHDNPFIRMSYSAAVTIL-TRHGFDVNPDSGLSKQHELFLVKYT- 634
R + M +L + F ++P +Q + Y
Sbjct: 65 LRLFW---------TLLSKQ-EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 635 ------NNVPIFIINWPKHV 648
N+ +F +V
Sbjct: 115 QRDRLYNDNQVFA---KYNV 131
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 3e-08
Identities = 32/166 (19%), Positives = 49/166 (29%), Gaps = 52/166 (31%)
Query: 471 EEFPNVRGMWERSEESICEQSMADVLYLTENSGKLKLDLSLSKVYTLNPT-----FRAEN 525
+ + +W R AD + + G S+ + NP F E
Sbjct: 1637 KTSKAAQDVWNR----------AD-NHFKDTYG-----FSILDIVINNPVNLTIHFGGEK 1680
Query: 526 SKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSV---LNRVLESHEEELLTYRKLIN 582
K + E Y + F + I D E+ K + E+ LL +
Sbjct: 1681 GK---RIRENYS---AMIF-ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL------S 1727
Query: 583 LANITDLQCIHDNP--FIRMSYSAAVTILTRHGFDVNPDS---GLS 623
T Q P + M AA L G + D+ G S
Sbjct: 1728 ATQFT--Q-----PALTL-MEK-AAFEDLKSKGL-IPADATFAGHS 1763
Score = 35.0 bits (80), Expect = 0.095
Identities = 55/346 (15%), Positives = 87/346 (25%), Gaps = 121/346 (34%)
Query: 223 YRYILAEP-DPHAPFRQEFDESTETA------GKPIPGWL----------YRTLAP-SHV 264
Y ++ + A E +T A G I WL Y P S
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 265 LLAL------------HDRAP-QLRISEDRL-AVTGDKGYCMVRATNYVGHGTWYWEATI 310
L+ + P +LR L TG +V A I
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELR---SYLKGATG-HSQGLVTA------------VAI 283
Query: 311 EEMPEGSATRMGWGQEYANLQTPLGYDKFGYSWRSRKGTRFHECRGK--------HYSEG 362
A W + +++ + + G R +E S
Sbjct: 284 -------AETDSWESFFVSVRKAITV----LFF---IGVRCYEAYPNTSLPPSILEDSLE 329
Query: 363 YSEG-------------DTLGFLI-----HLPYRNQ------NSYVPRTF------KDKP 392
+EG + + + HLP Q N + +
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG--AKNLVVSGPPQS-- 385
Query: 393 LVKFKCHLYYEEKDKVTEALKRLQTLDQSQIVFYKNGKSQGVAFQDIYA----GYYYPCV 448
L L K LDQS+I F + F + + P
Sbjct: 386 LYGLNLTL---------RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 449 SLHKNCTVSVNFGPHFKH-ALP---TEEFPNVRGMWERSEESICEQ 490
L V N + K +P T + ++R + E I +
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Score = 31.6 bits (71), Expect = 1.0
Identities = 53/256 (20%), Positives = 68/256 (26%), Gaps = 103/256 (40%)
Query: 35 FMMNYVF----ICKN--CSNTGLESFKKNQAM---FPQMCITAI--GNLMQTSI-KEGNP 82
F Y F I N + T +K + + + M I G L I KE N
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 83 R---FTFSKEKEIIPFIEAHWDGMTTTPRRVTQ----SWHLTILRALAKETNVLFTCNES 135
+TF EK + ++ T + TQ L +
Sbjct: 1713 HSTSYTFRSEKGL----------LSAT--QFTQPALTLMEKAAFEDLKSK---------- 1750
Query: 136 QEQYGLIDKD--LAHIKPNYEQMIKGGHIKVTDMGIQS----------SGSNKGRGAKRK 183
GLI D A GH S +
Sbjct: 1751 ----GLIPADATFA------------GH---------SLGEYAALASLADV--------- 1776
Query: 184 MPGETGV--VSKRGRGAGGDAAVPKLPAHGYPLDHPFNKDGYRYILAEPDP-HAPFRQE- 239
M E+ V V RG AVP+ + Y I P A F QE
Sbjct: 1777 MSIESLVEVVFYRGMTM--QVAVPR---------DELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 240 FDESTETAGKPIPGWL 255
E GK GWL
Sbjct: 1826 LQYVVERVGKRT-GWL 1840
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 37.9 bits (88), Expect = 5e-04
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 13 CANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLES 53
C C W H CI +P F+C C S
Sbjct: 34 CDGCGVWHHTRCIGINNADALPS----KFLCFRCIELSGPS 70
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 37.0 bits (86), Expect = 8e-04
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 13 CANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNT 49
C C W H SC + + VF+C+ C ++
Sbjct: 21 CNECHTWIHLSCAKIRKSNVPE-----VFVCQKCRDS 52
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 36.5 bits (84), Expect = 0.002
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 13 CANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKKN 57
C C+ WFH SC+ + V ++ C +C S KN
Sbjct: 30 CGLCQDWFHGSCVGIEEENAVDID---IYHCPDCEAVFGPSIMKN 71
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion
protein, signal transduction, transcription, metal BI
WNT proteins; 1.90A {Homo sapiens}
Length = 105
Score = 35.7 bits (81), Expect = 0.008
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 13 CANCKCWFHESC--ISYQIGKLVPFMMNYVFICKNCSNTGLESFKKNQAMFPQMCITAIG 70
A+C+ WFH C ++ L+ + V+ C C T S + + F + T +
Sbjct: 23 EASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGSGSGSQFVYVFTTHLA 82
Query: 71 NLMQTSIKEG 80
N ++ +G
Sbjct: 83 NTAAEAVLQG 92
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium,
SGC, structural genom type zinc finger, protein
binding, zinc ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 34.4 bits (79), Expect = 0.010
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 13 CANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNT 49
C C W H SC + + VF+C+ C ++
Sbjct: 36 CNECHTWIHLSCAKIRKSNVPE-----VFVCQKCRDS 67
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 33.7 bits (77), Expect = 0.016
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 13 CANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKK 56
C CK WFH SC+ + + ++ C NC T +S K
Sbjct: 28 CDACKDWFHGSCVGVEEEEAPDID---IYHCPNCEKTHGKSTLK 68
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 32.6 bits (74), Expect = 0.046
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 13 CANCKCWFHESCISYQIGKLVPFMMNY-VFICKNCS 47
C C+ WFH C+ + N +IC NC+
Sbjct: 33 CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 31.5 bits (71), Expect = 0.11
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 13 CANCKCWFHESCISYQIGKLVPFMMNYVFICKNC 46
C+ W H +C+ + VF C+ C
Sbjct: 29 DQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELC 62
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 30.3 bits (68), Expect = 0.18
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 13 CANCKCWFHESC--ISYQIGKLVPFMMNYVFICKNCS 47
C WFH+ C +S ++ + +IC NC+
Sbjct: 22 DGGCDEWFHQVCVGVSPEMAENE------DYICINCA 52
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 33.4 bits (77), Expect = 0.19
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 12/43 (27%)
Query: 256 YRTLAPSH-----------VLLALHDRAPQLRISEDRLAVTGD 287
YR LAP H VL + A +L RLAV G
Sbjct: 124 YR-LAPEHPYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGS 165
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling
pathway, WNT signaling complex, chromosomal
rearrangement, signaling protein; 1.59A {Homo sapiens}
PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 30.5 bits (68), Expect = 0.20
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 11 LFC-ANCKCWFHESC--ISYQIGKLVPFMMNYVFICKNC 46
+ C A+C+ WFH C ++ L+ + V+ C C
Sbjct: 25 ILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTC 63
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 30.6 bits (69), Expect = 0.21
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 13 CANCKCWFHESCISYQIGKLVPFMMNYV--FICKNCSNT 49
C C+ WFH C+ K+ P ++ + C +CSN
Sbjct: 25 CDLCEMWFHGKCV-----KITPARAEHIKQYKCPSCSNK 58
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 32.9 bits (75), Expect = 0.30
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 513 KVYTLNPTFRAENSKSRLHLAEFYMIEAELA-FLDNIHDLCNTIEQFIKSV 562
K++ + P +R E+ HL EF M+ +L + I F+ +
Sbjct: 157 KIFEIGPCYRKESDGKE-HLEEFTMLVFWQMGSGCTRENLESIITDFLNHL 206
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 32.3 bits (74), Expect = 0.42
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 12/43 (27%)
Query: 256 YRTLAPSH-----------VLLALHDRAPQLRISEDRLAVTGD 287
YR LAP LL +H A +L I R+AV G
Sbjct: 118 YR-LAPETTFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQ 159
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.46
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 17/42 (40%)
Query: 237 RQEFDESTETAGKPIPGWLYRTLAPSHVLLALHDRAPQLRIS 278
+Q + + + K LY A D AP L I
Sbjct: 19 KQAL-KKLQASLK-----LY---AD--------DSAPALAIK 43
Score = 30.3 bits (67), Expect = 1.2
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 404 EKDKVTEALKRLQTLDQSQIVFYKNGKSQGVAFQ 437
EK +ALK+L Q+ + Y + + +A +
Sbjct: 18 EK----QALKKL----QASLKLYADDSAPALAIK 43
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 32.2 bits (74), Expect = 0.53
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 12/43 (27%)
Query: 256 YRTLAPSH-----------VLLALHDRAPQLRISEDRLAVTGD 287
Y L+P V A + ++ +++ GD
Sbjct: 126 YS-LSPQARYPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGD 167
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 31.9 bits (71), Expect = 0.64
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 3/103 (2%)
Query: 13 CANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKKNQAMFPQMCITAIGNL 72
C CK WFH SC+ + + ++ + C NC+ S K + + + T I +
Sbjct: 55 CDICKDWFHGSCVG--VEEHHAVDIDL-YHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDG 111
Query: 73 MQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWH 115
+ + + E + + H
Sbjct: 112 SKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKH 154
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 31.8 bits (73), Expect = 0.68
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 12/43 (27%)
Query: 256 YRTLAPSH-----------VLLALHDRAPQLRISEDRLAVTGD 287
YR LAP + L + DRA +L + DR+AV GD
Sbjct: 112 YR-LAPEYKFPTAVEDAYAALKWVADRADELGVDPDRIAVAGD 153
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 29.0 bits (65), Expect = 0.83
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 11 LFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKKN 57
+ C +C W+H C +G + + C C+N + KK+
Sbjct: 34 IGCDDCDDWYHWPC----VGIMAAPPEEMQWFCPKCANKIKKD-KKH 75
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 31.5 bits (72), Expect = 0.95
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 12/43 (27%)
Query: 256 YRTLAPSH-----------VLLALHDRAPQLRISEDRLAVTGD 287
YR LAP H + + A +LRI ++ V GD
Sbjct: 118 YR-LAPEHKFPAAVYDCYDATKWVAENAEELRIDPSKIFVGGD 159
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 31.1 bits (71), Expect = 1.0
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 12/43 (27%)
Query: 256 YRTLAPSH-----------VLLALHDRAPQLRISEDRLAVTGD 287
YR LAP H + D +L + ++AV GD
Sbjct: 115 YR-LAPEHKFPAAVEDAYDAAKWVADNYDKLGVDNGKIAVAGD 156
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 31.0 bits (71), Expect = 1.2
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 12/43 (27%)
Query: 256 YRTLAPSH-----------VLLALHDRAPQLRISEDRLAVTGD 287
YR LAP H L + +RA + R+AV GD
Sbjct: 113 YR-LAPEHKFPAAVEDAYDALQWIAERAADFHLDPARIAVGGD 154
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 28.5 bits (63), Expect = 1.6
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 11 LFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCS 47
+ C C +H+ C Q+ V+ C C+
Sbjct: 34 VECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 27.9 bits (62), Expect = 1.7
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 15/43 (34%)
Query: 11 LFCANCKC---WFHESCISYQ---IGKLVPFMMNYVFICKNCS 47
+ C N C WFH C+ GK + C C+
Sbjct: 20 VGCDNQDCPIEWFHYGCVGLTEAPKGK---------WYCPQCT 53
>3bjx_A Halocarboxylic acid dehalogenase DEHI; plasmid, hydrolase; 2.30A
{Pseudomonas putida}
Length = 311
Score = 29.8 bits (66), Expect = 3.1
Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 11/179 (6%)
Query: 93 IPFIEAHWDGMTTTPRRVTQSWHLTILRALAKETNVLFTCNESQEQYGLIDKDLAHIKPN 152
+P++ + T P + +W +E L ++ L +I P
Sbjct: 47 VPWVAFGCRVLATFPGYLPLAWRR--SAEALITRYAEQAADE------LRERSLLNIGPL 98
Query: 153 YEQMIKGGHIKVTDMG---IQSSGSNKGRGAKRKMPGETGVVSKRGRGAGGDAAVPKLPA 209
+ D ++ G + + T + G A V
Sbjct: 99 PNLKERLYAAGFDDGEIEKVRRVLYAFNYGNPKYLLLITALSESMQMRPVGGAEVSSELR 158
Query: 210 HGYPLDHPFNKDGYRYILAEPDPHAPFRQEFDESTETAGKPIPGWLYRTLAPSHVLLAL 268
P HP D ++ + + P ++ LA +L +
Sbjct: 159 ASIPKGHPKGMDPLLPLVDATKASTEVQGLLKRVADLHYHHGPASDFQALANWPKVLQI 217
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 29.5 bits (65), Expect = 3.8
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 7/109 (6%)
Query: 13 CANCKCWFHESCISYQIGKLVPFMMNYV--FICKNCSNTGLESFKKNQAMFPQMCITAIG 70
C C+ WFH SC+ + + + C NC S K + + T G
Sbjct: 23 CDMCQDWFHGSCV-----GVEEEKAADIDLYHCPNCEVLHGPSIMKKRRGSSKGHDTHKG 77
Query: 71 NLMQTSIKEGNPRFTFSKEKEIIPFIEAHWDGMTTTPRRVTQSWHLTIL 119
++T I T S+ + IL
Sbjct: 78 KPVKTGSPTFVRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPIL 126
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 28.8 bits (63), Expect = 4.0
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 13 CANCKCWFHESCI---SYQIGKLVPFMMNYVFICKNCSNTGLESFKKNQAMFPQMC 65
C C W H C L + + C NC+ ++ Q+
Sbjct: 24 CGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAEWRLALEKELQIS 79
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 29.6 bits (66), Expect = 4.0
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 520 TFRAENSKSRLHLAEFYMIEAELAFLD---NIHDLCNTIEQFIK 560
FR E + + HL ++ +A +I+D E +
Sbjct: 233 CFRREQKEDKSHLMTYHSASCAIA--GEGVDINDGKAIAEGLLS 274
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 28.1 bits (63), Expect = 4.9
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 99 HWDGMTTTPRRVTQSWH 115
HW + PRR WH
Sbjct: 132 HWKEICDFPRRQIAKWH 148
>1wew_A DNA-binding family protein; structural genomics, PHD domain,
riken structural genomics/proteomics initiative, RSGI,
DNA binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 27.0 bits (59), Expect = 5.5
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 1/35 (2%)
Query: 13 CANCKCWFHESCISYQIGKLVPFMMNY-VFICKNC 46
C W H C+ + F C+ C
Sbjct: 35 DPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEIC 69
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 28.2 bits (63), Expect = 5.8
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 99 HWDGMTTTPRRVTQSWH 115
HW M PRR WH
Sbjct: 127 HWSDMLANPRRPIAQWH 143
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 27.7 bits (62), Expect = 6.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 99 HWDGMTTTPRRVTQSWHLTILRA 121
HW M PR+ WH L+A
Sbjct: 118 HWKDMIARPRQPVAQWH--QLKA 138
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 29.2 bits (65), Expect = 6.1
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 520 TFRAENSKSRLHLAEFYMIEAELAFLDNIH--DLCNTIEQFIK 560
FR E + + HL ++ + + D E +
Sbjct: 233 CFRREQKEDKSHLMTYHSASC-AIAGEGVDINDGKAIAEGLLS 274
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 26.3 bits (58), Expect = 6.4
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 15/41 (36%)
Query: 13 CANCKC---WFHESCISYQ---IGKLVPFMMNYVFICKNCS 47
C N C WFH +C+ GK + C C
Sbjct: 25 CDNPDCPIEWFHFACVDLTTKPKGK---------WFCPRCV 56
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone
demethylase, catalytic core, oxidoreductase; HET: DNA
AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Length = 373
Score = 28.5 bits (62), Expect = 6.9
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 416 QTLDQSQIVFYKNGKSQGVAFQDIYAGYYYPCVSLHKNCTVSVNFGPH 463
+ L ++ I + +G F Y Y+ + N SVNF
Sbjct: 295 KLLQENGIRCNEIVHHEG-EFMITYPYGYHAGFNYGYNLAESVNFALE 341
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT
structure initiative; HET: MSE; 1.40A {Pseudomonas
aeruginosa} SCOP: d.32.1.7
Length = 136
Score = 27.6 bits (61), Expect = 7.5
Identities = 25/112 (22%), Positives = 33/112 (29%), Gaps = 15/112 (13%)
Query: 236 FRQEFDESTETAGKPIPGWLYRTLAPSHVLLALHDRAPQLRISEDRLAVTGDKGYCMVRA 295
F + G PG L L L D++ S R A +
Sbjct: 29 FDDAEILQIQRYGAEGPGPEGSVL---KALFRLGDQSVHCIDSHVRHAFDFTPAFSFFVD 85
Query: 296 TNYVGHGTWYWEATIE----EMPEGSATRMGWGQEYANLQTPLGYDKFGYSW 343
EA + MP G G+ Q +A L D+FG SW
Sbjct: 86 CESNAQIERLAEALSDGGKALMPLG---DYGFSQRFAWLA-----DRFGVSW 129
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 28.8 bits (64), Expect = 7.6
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 520 TFRAENSKSRLHLAEFYMIEAELAFLD---NIHDLCNTIEQFIK 560
FR E + + HL ++ +A +I+D E +
Sbjct: 233 CFRREQKEDKSHLMTYHSASCAIA--GEGVDINDGKAIAEGLLS 274
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 28.3 bits (63), Expect = 7.9
Identities = 24/162 (14%), Positives = 38/162 (23%), Gaps = 35/162 (21%)
Query: 205 PKLPAHGYPLDHPFNKDGYRYILAEPD----------------PHAPFRQEFDESTETA- 247
+ PL+ YR E P P + + +T
Sbjct: 11 HHMAFFDLPLEELKK---YRPERYEEKDFDEFWEETLAESEKFPLDPVFERMESHLKTVE 67
Query: 248 ----------GKPIPGWLYR---TLAPSHVLLALHDRAPQLRISEDRLAVTGDKGYCMVR 294
G+ I GWL ++ R GY
Sbjct: 68 AYDVTFSGYRGQRIKGWLLVPKLEEEKLPCVVQYIG-YNGGRGFPHDWLFWPSMGYICF- 125
Query: 295 ATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYANLQTPLGY 336
+ G G+ + + + PEG G + P Y
Sbjct: 126 VMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTY 167
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 27.7 bits (61), Expect = 9.4
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 155 QMIKGGHIKVTDMGIQSSGSNKGRGAKRKMPGETGVVSKRG 195
++IK G + I S + ++ TG ++G
Sbjct: 43 KLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKG 83
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 28.4 bits (63), Expect = 9.6
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 520 TFRAENSKSRLHLAEFYMIEAELAFLD---NIHDLCNTIEQFIK 560
FR E + + HL ++ +A +I+D E +
Sbjct: 233 CFRREQKEDKSHLMTYHSASCAIA--GEGVDINDGKAIAEGLLS 274
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P*
1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P*
1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P*
1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Length = 149
Score = 27.2 bits (60), Expect = 9.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 155 QMIKGGHIKVTDMGIQSSGSNKGRGAKRKMPGETGVVSKRGR 196
+++ G I+ D S G + R KR + G S++G+
Sbjct: 43 ELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGK 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.426
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,295,300
Number of extensions: 624380
Number of successful extensions: 1523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1480
Number of HSP's successfully gapped: 83
Length of query: 661
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 561
Effective length of database: 3,909,693
Effective search space: 2193337773
Effective search space used: 2193337773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)