RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4384
(661 letters)
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 87.5 bits (216), Expect = 4e-20
Identities = 28/215 (13%), Positives = 59/215 (27%), Gaps = 62/215 (28%)
Query: 270 DRAPQLRISEDRLAVT----GDKGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQ 325
DR+ + + ED + +R + G WE G+ +G
Sbjct: 30 DRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCT 89
Query: 326 EYANL-----QTPLGYDKFGYSWRSRKGTRFHECRGKH---------YSEGYSEGDTLGF 371
A L Q+ +G + + W + +H+ + E + D
Sbjct: 90 ADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLV 149
Query: 372 LIHLPYRNQNSYVPRTFKDKPLVKFKCHLYYEEKDKVTEALKRLQTLDQSQIVFYKNGKS 431
+ + D+ + F + +
Sbjct: 150 ALDM-------------------------------------------DEGTLSFIVDQQY 166
Query: 432 QGVAFQDIYAGYYYPCVSLH-KNCTVSVNFGPHFK 465
G+AF+ + YP VS +C +++ +
Sbjct: 167 LGIAFRGLRGKKLYPIVSAVWGHCEITMRYIGGLD 201
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 86.8 bits (214), Expect = 6e-20
Identities = 32/203 (15%), Positives = 56/203 (27%), Gaps = 44/203 (21%)
Query: 269 HDRAPQLRISEDRLAVTGDK---GYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQ 325
D + + + E L VR G WE + G+ +G
Sbjct: 40 KDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVAT 99
Query: 326 EYANLQTP-----LGYDKFGYSWRSRKGTRFHECRGKHYSEGYSEGDTLGFLIHLPYRNQ 380
A LQ LG + + W +G +H+ +G Q
Sbjct: 100 ALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEA-------------------PQ 140
Query: 381 NSYVPRTFKDKPLVKFKCHLYYEEKDKVTEALKRLQTLDQSQIVFYKNGKSQGVAFQDIY 440
P+ + + L +++ + + G G AF+ +
Sbjct: 141 YPAGPQGEQLVVPERLLVVLD----------------MEEGTLGYSIGGTYLGPAFRGLK 184
Query: 441 AGYYYPCVSL-HKNCTVSVNFGP 462
YP VS C V + +
Sbjct: 185 GRTLYPSVSAVWGQCQVRIRYMG 207
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 49.4 bits (117), Expect = 5e-07
Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 10/148 (6%)
Query: 508 DLSLSKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVL 567
+VY + P +R E + HL E+ ++ E+ F+ + DL E + +L L
Sbjct: 77 VGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEAL 136
Query: 568 ESHEEELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHE 627
+ +E+ + A + G+ V D +
Sbjct: 137 NTAGDEIRLLGA--------TWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERL 188
Query: 628 LF--LVKYTNNVPIFIINWPKHVKPFYM 653
L + + +F+ +P+ V+PFY
Sbjct: 189 LGEYAKERWGSDWLFVTRYPRSVRPFYT 216
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 47.9 bits (113), Expect = 2e-06
Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Query: 512 SKVYTLNPTFRAENSKSRLHLAEFYMIEAELAFLDNIHDLCNTIEQFIKSVLNRVLESHE 571
+VY + P FRAENS + H+ EF ++ E+AF ++ H++ +T+ + + + + +
Sbjct: 111 ERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFA 170
Query: 572 EELLTYRKLINLANITDLQCIHDNPFIRMSYSAAVTILTRHGFDVNPDSGLSKQHELFLV 631
E+ RK + + + D +R++Y + +L G ++ LS ++E FL
Sbjct: 171 HEIELVRKQY---PVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLG 227
Query: 632 KYTNNV----PIFIINWPKHVKPFYM 653
K + + +P ++PFY
Sbjct: 228 KLVRDKYDTDFYILDKFPLEIRPFYT 253
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 38.7 bits (89), Expect = 2e-04
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 11 LFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKKNQAMFP 62
+ C C +H+ C Q+ V+ C C+ +KNQ P
Sbjct: 34 VECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKNQKSGP 85
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 35.9 bits (82), Expect = 0.001
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 7 NLIELFCANCKCWFHESCISY-QIGKLVPFMMNYVFICKNCSNT 49
++I+ C W H C+ + F C+ C T
Sbjct: 29 SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 35.8 bits (82), Expect = 0.001
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 11 LFCANCKCWFHESCISYQIGKLVPFM-MNYVFICKNCS 47
+ C C+ WFH C+ + +IC NC+
Sbjct: 31 ICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 34.6 bits (79), Expect = 0.003
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 11 LFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNC 46
L C C W H CI +P F+C C
Sbjct: 32 LACDGCGVWHHTRCIGINNADALP----SKFLCFRC 63
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 33.9 bits (77), Expect = 0.006
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 11 LFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSN 48
+ C C+ WFH C+ + + C +CSN
Sbjct: 23 ICCDLCEMWFHGKCVKITPARAEH---IKQYKCPSCSN 57
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 33.5 bits (76), Expect = 0.009
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 11 LFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKKNQAMFPQ 63
+ C C+ WFH SC+ + V + + C +C S KN P
Sbjct: 28 IECGLCQDWFHGSCVGIEEENAVDIDI---YHCPDCEAVFGPSIMKNWHSGPS 77
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 61
Score = 31.8 bits (72), Expect = 0.022
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 11 LFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGL 51
L C C +H C + +P + N ++C C+ L
Sbjct: 22 LCCDTCPSSYHIHC----LNPPLPEIPNGEWLCPRCTCPAL 58
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 29.6 bits (66), Expect = 0.16
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 11 LFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTG 50
+ C C+ FH C + + + C C
Sbjct: 20 VMCNQCEFCFHLDC----HLPALQDVPGEEWSCSLCHVLP 55
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 26.9 bits (59), Expect = 1.1
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 11 LFCANCKCWFHESCISYQIGKLVPFMMNYVFICKNC 46
+ C C FH C+ + + VP + + C C
Sbjct: 16 ILCDECNKAFHLFCLRPALYE-VP---DGEWQCPAC 47
>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 311
Score = 29.3 bits (64), Expect = 1.6
Identities = 20/136 (14%), Positives = 33/136 (24%), Gaps = 9/136 (6%)
Query: 228 AEPDPHAPFRQEFDESTETAGKPIPGWLYRTLAPSHVLLALHDRAPQLRISEDRLAVTGD 287
+ H + D + + I +Y+ S VL+ H + E A+
Sbjct: 45 RQLSQHERVERVEDRTIKGRNGDIRVRVYQQKPDSPVLVYYHGGGFVICSIESHDALC-- 102
Query: 288 KGYCMVRATNYVGHGTWYWEATIEEMPEGSATRMGWGQEYANLQTPLGYDK-----FGYS 342
+ R +N Y A + P + A L D G S
Sbjct: 103 --RRIARLSNSTVVSVDYRLAPEHKFPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDS 160
Query: 343 WRSRKGTRFHECRGKH 358
Sbjct: 161 AGGNLAAAVSIMARDS 176
>d1u6ka1 c.127.1.1 (A:2-283) F420-dependent
methylenetetrahydromethanopterin dehydrogenase (MTD)
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 282
Score = 27.5 bits (61), Expect = 4.9
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 11/69 (15%)
Query: 190 VVSKRGRGAGGDAAVPKLPAHGYPL----DHPFNKD-------GYRYILAEPDPHAPFRQ 238
G A L YP D P K G YIL +PD R+
Sbjct: 69 YGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQGLGYILVKPDAMLGARR 128
Query: 239 EFDESTETA 247
EF + E A
Sbjct: 129 EFLDPVEMA 137
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 26.5 bits (58), Expect = 6.6
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 171 SSGSNKGRGAKRKMPGETGVVSKRGRGAGGDAAVPKLPAHGYPLDHPFNKDGYRYI 226
+S + RG++ G ++RG G G H + P K G++
Sbjct: 1 TSKKKRQRGSRT--HGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEPLGKSGFKRP 54
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermotoga maritima [TaxId:
2336]}
Length = 218
Score = 27.0 bits (59), Expect = 7.0
Identities = 8/61 (13%), Positives = 23/61 (37%)
Query: 15 NCKCWFHESCISYQIGKLVPFMMNYVFICKNCSNTGLESFKKNQAMFPQMCITAIGNLMQ 74
+ + + + + + + YV I + G+++ K A + +T + + Q
Sbjct: 57 SAEVVSLDYEGMVREARELAQISEYVVIKIPMTPDGIKAVKTLSAEGIKTNVTLVFSPAQ 116
Query: 75 T 75
Sbjct: 117 A 117
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 26.2 bits (57), Expect = 8.8
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 97 EAHWDGMTTTPRRVTQSWH 115
HW + PRR WH
Sbjct: 115 GGHWKEICDFPRRQIAKWH 133
>d1tsja_ d.32.1.7 (A:) Hypothetical protein MW1090 {Staphylococcus
aureus [TaxId: 1280]}
Length = 129
Score = 25.8 bits (56), Expect = 9.2
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 319 TRMGWGQEYANLQTPLGYDKFGYSW 343
T M +E+A +Q DKFG S+
Sbjct: 104 TNMPPYREFAWVQ-----DKFGVSF 123
>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex
(Ubiquinol-cytochrome c reductase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 25.8 bits (57), Expect = 9.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 400 LYYEEKDKVTEALKRL 415
L EE + AL+RL
Sbjct: 46 LIAEENPIMQTALRRL 61
>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 282
Score = 26.8 bits (59), Expect = 9.2
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 485 ESICEQSMADVLYLTENSGKLKLDLSLSKVYTLNPTFRAENSKSRLHLAEFYMI------ 538
E I E S V+YLT+N+G++ D L K + K + +I
Sbjct: 139 ERIKELSSGKVVYLTDNAGEIFFDTLLMKE------IKRRCEKLTAVVRGRPIISDATIE 192
Query: 539 EAELAFLDNI 548
+A LA +D I
Sbjct: 193 DARLARVDKI 202
>d1u7ia_ d.32.1.7 (A:) Hypothetical protein PA1358 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 134
Score = 25.8 bits (56), Expect = 9.5
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 319 TRMGWGQEYANLQTPLGYDKFGYSW 343
G+ Q +A L D+FG SW
Sbjct: 109 GDYGFSQRFAWLA-----DRFGVSW 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.426
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,579,791
Number of extensions: 125162
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 28
Length of query: 661
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 570
Effective length of database: 1,158,166
Effective search space: 660154620
Effective search space used: 660154620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)