BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4385
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/443 (42%), Positives = 272/443 (61%), Gaps = 9/443 (2%)
Query: 19 VESKAIDLTD--DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPF 76
V + D+T D GVLK +K G G+ TP G KV VHY G L +G FDSS R EPF
Sbjct: 18 VAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPF 77
Query: 77 EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
F LGKGQVIKAWD G+ATMK+ E+ CKPEYAYG GS P IP ++TL FE+E++ +
Sbjct: 78 VFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 137
Query: 137 EAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSE 196
+ ED+ DGGI R +G +S P +GA VEI L+G C G++F +F +GEG +
Sbjct: 138 KGEDL--FEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGED 195
Query: 197 YDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKD 256
+DIP ++KALEK + +E+ L++ P++ + G K G+ N Y +T+ +FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255
Query: 257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKT 316
+W++++ EKLEQ ++KE+GT YFK K+ A Y K + +L+ + G ++ +
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315
Query: 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376
L A LN AMC LKL++ A + CDKA+ L+ NEK +RRG A L +NE E A+ DF+
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375
Query: 377 KVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTXXXXXXXXXXPDVM 436
KVL+++P NKAA +++ ++K +E +++++YANMF KFA+ D +
Sbjct: 376 KVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKA-----MG 430
Query: 437 KTLGEWGAEERGRESTNFEKENP 459
K E E+G +S E+E P
Sbjct: 431 KKTSEGVTNEKGTDSQAMEEEKP 453
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 16 IRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEP 75
I +++ K DL +DGG+++ K G G + P+ G V++H G G +FD
Sbjct: 132 IELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGR-CGGRMFDCRDVA--- 187
Query: 76 FEFDLGKGQ---VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFEV 131
F +G+G+ + D+ + M+++E + P Y +G+ G P I P++ L++EV
Sbjct: 188 --FTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEV 245
Query: 132 EMISWE 137
+ S+E
Sbjct: 246 TLKSFE 251
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 350 bits (899), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 176/394 (44%), Positives = 251/394 (63%), Gaps = 2/394 (0%)
Query: 29 DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
D GVLK +K G G+ TP G +V VHY G L +G FDSS R EPF F +GKGQVIKA
Sbjct: 30 DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89
Query: 89 WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGG 148
WD G+ATMKK E+ CKPEYAYG GS P IP ++TL FEVE++ ++ ED+ DGG
Sbjct: 90 WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFKGEDL--LEDGG 147
Query: 149 IRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALE 208
I R G +S P +GA V+I L+G C G+VF +F +GEG ++DIP ++KALE
Sbjct: 148 IIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIPIGIDKALE 207
Query: 209 KFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQ 268
K + +E+ L + P++ + G K G+ N Y +T+ +FEK K++W++++ EKLEQ
Sbjct: 208 KMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ 267
Query: 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL 328
++KE+GT YFK K+ A Y K + +L+ + G ++ + L A LN AMC
Sbjct: 268 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327
Query: 329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
LKL++ A + CDKA+ L+ NEK +RRG A L +NE E A+ DF+KVL+++P NKAA
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
Query: 389 VQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDT 422
++ ++K +E ++++ YANMF KFA+ D
Sbjct: 388 RLQIFMCQKKAKEHNERDRRTYANMFKKFAEQDA 421
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 16 IRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEP 75
+ +++ K DL +DGG+++ K G G + P+ G +V++H G G VFD
Sbjct: 132 VELLDFKGEDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGR-CGGRVFDCRDV---- 186
Query: 76 FEFDLGKGQ---VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFEV 131
F +G+G+ + D+ + M+++E + P Y +G+ G P I P++ L++EV
Sbjct: 187 -AFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEV 245
Query: 132 EMISWE 137
+ S+E
Sbjct: 246 TLKSFE 251
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 22/155 (14%)
Query: 134 ISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGE-CEGKVFQEGT-----F 187
++ + ED++ D G+ + + G TP G V + G+ GK F F
Sbjct: 18 VAEQGEDVTSKKDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPF 77
Query: 188 SFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTIT 247
F +G+G + + + + K E L +P++ + G+ +PSN + +
Sbjct: 78 VFSIGKGQ---VIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLP-KIPSNATLFFEVE 133
Query: 248 MNNFEKIKDTWQLNSDEKLEQGKLL---KERGTTY 279
+ +F+ ++ LE G ++ K RG Y
Sbjct: 134 LLDFK---------GEDLLEDGGIIRRTKRRGEGY 159
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 244 bits (623), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 116/277 (41%), Positives = 180/277 (64%)
Query: 146 DGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEK 205
DGGI R I G ++ P +GA VE+ L+G + K+F + F +GEG D+P LE+
Sbjct: 24 DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLER 83
Query: 206 ALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEK 265
A+++ + E S ++++P + + G +K +P N Y + + +FEK K++W++NS+EK
Sbjct: 84 AIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEK 143
Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAA 325
LEQ ++KERGT YFK+ K++ A YKK + +L+++ F E+ + + A HLN A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203
Query: 326 MCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
MC LKL+ A + C+KA+EL+ NNEK FRRG A+L +N+ ELA DFQKVLQ+ PNN
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNN 263
Query: 386 KAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDT 422
KAA +L +Q++R Q +EK++YANMF++ A+ +
Sbjct: 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEEN 300
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 26 LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQV 85
+ +DGG+++ I+T G G P+ G V+V G D +FD + R F++G+G+
Sbjct: 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKD-KLFDQRELR-----FEIGEGEN 74
Query: 86 IK---AWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFEVEMISWE 137
+ +R I M+K E ++ KP YA+G G IPP++ L +E+ + S+E
Sbjct: 75 LDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFE 130
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 238 bits (607), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 115/277 (41%), Positives = 178/277 (64%)
Query: 146 DGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEK 205
DGGI R I G ++ P +GA VE+ L+G + K+F + F +GEG D+P LE+
Sbjct: 24 DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLER 83
Query: 206 ALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEK 265
A+++ + E S ++++P + + G +K +P N Y + + +FEK K++W+ NS+EK
Sbjct: 84 AIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEXNSEEK 143
Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAA 325
LEQ ++KERGT YFK+ K++ A YKK + +L+++ F E+ + + A HLN A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203
Query: 326 MCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
MC LKL+ A + C+KA+EL+ NNEK RRG A+L +N+ ELA DFQKVLQ+ PNN
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263
Query: 386 KAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDT 422
KAA +L +Q++R Q +EK++YANMF++ A+ +
Sbjct: 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEEN 300
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 10/116 (8%)
Query: 26 LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQV 85
+ +DGG+++ I+T G G P+ G V+V G D +FD + R F++G+G+
Sbjct: 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKD-KLFDQRELR-----FEIGEGEN 74
Query: 86 IK---AWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFEVEMISWE 137
+ +R I +K E ++ KP YA+G G IPP++ L +E+ + S+E
Sbjct: 75 LDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFE 130
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 152/241 (63%)
Query: 19 VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
+E I D GVLK IK G G P G +V VHYTG LLDGT FDSS R + F F
Sbjct: 40 MEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSF 99
Query: 79 DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
DLGKG+VIKAWD IATMK EV TCKPEYAYG GSPP IPP++TLVFEVE+ ++
Sbjct: 100 DLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 159
Query: 139 EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYD 198
ED++ DGGI R I G ++ P +GA VE+ L+G + K+F + F +GEG D
Sbjct: 160 EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLD 219
Query: 199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTW 258
+P LE+A+++ + E S ++++P + + G +K +P N Y + + +FEK K++W
Sbjct: 220 LPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESW 279
Query: 259 Q 259
+
Sbjct: 280 E 280
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 221 bits (564), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 157/245 (64%), Gaps = 4/245 (1%)
Query: 19 VESKAIDLTD--DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPF 76
V + D+T D GVLK +K G G+ TP G KV VHY G L +G FDSS R EPF
Sbjct: 22 VAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPF 81
Query: 77 EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
F LGKGQVIKAWD G+ATMKK E+ CKPEYAYG GS P IP ++TL FE+E++ +
Sbjct: 82 VFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
Query: 137 EAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSE 196
+ ED+ DGGI R +G +S P +GA VEI L+G C G++F +F +GEG +
Sbjct: 142 KGEDL--FEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGED 199
Query: 197 YDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKD 256
+DIP ++KALEK + +E+ L++ P++ + G K G+ N Y +T+ +FEK K+
Sbjct: 200 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 259
Query: 257 TWQLN 261
+W+++
Sbjct: 260 SWEMD 264
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 16 IRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEP 75
I +++ K DL +DGG+++ K G G + P+ G V++H G G +FD
Sbjct: 136 IELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGR-CGGRMFDCRDV---- 190
Query: 76 FEFDLGKGQ---VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFEV 131
F +G+G+ + D+ + M+++E + P Y +G+ G P I P++ L++EV
Sbjct: 191 -AFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEV 249
Query: 132 EMISWE 137
+ S+E
Sbjct: 250 TLKSFE 255
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 142/241 (58%), Gaps = 24/241 (9%)
Query: 45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVF 104
TP G +V+VHYTGTLLDG FDSS+ R + F+F LG+GQVIK WD+GI TMKK E A+F
Sbjct: 26 TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 85
Query: 105 TCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW-EAEDISPTHDGGIRREILEEGASFSTP 163
T PE AYG+ GSPPTIP ++TL F+VE++SW DI+ DGGI ++IL+EG + P
Sbjct: 86 TIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIA--KDGGIFKKILKEGDKWENP 143
Query: 164 KDGANVEITLKGECE-GKVFQEGTFSFVLGEGSEYDIPEN-----LEKALEKFKYKEKSR 217
KD V + + E G V + EG E+ + + L KA++ K EK
Sbjct: 144 KDPDEVFVKYEARLEDGTVVSK-------SEGVEFTVKDGHLCPALAKAVKTMKKGEKVL 196
Query: 218 LFVQPQHLWSGKGNDKLG----VPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLK 273
L V+PQ+ + G G VP N + + +++ + ++ D+K+ + K+LK
Sbjct: 197 LAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT---EIGDDKKILK-KVLK 252
Query: 274 E 274
E
Sbjct: 253 E 253
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 23/243 (9%)
Query: 25 DLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQ 84
D+ DGG+ K+I G P +V V Y L DGTV S E EF + G
Sbjct: 122 DIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGH 177
Query: 85 VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP-----TIPPDSTLVFEVEMISWE-A 138
+ A + + TMKK E + KP+Y +G+ G P +PP+++LV ++E++SW+
Sbjct: 178 LCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTV 237
Query: 139 EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVF------QEGTFSFVL 191
+I D I +++L+E + P +GA V + + G+ + G VF ++ F F
Sbjct: 238 TEIG--DDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEF-- 293
Query: 192 GEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLW-SGKGNDKLGVPSNKPATYTITMNN 250
+ E + E L++A+ K E + + + P++ + S + VP N Y + + +
Sbjct: 294 -KTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVS 352
Query: 251 FEK 253
F K
Sbjct: 353 FVK 355
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 7/133 (5%)
Query: 8 SAVIDSKRIRMVESKAI-DLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVF 66
S VID + +V K + ++ DD +LK++ G P+ G V V TG L DGTVF
Sbjct: 224 SLVID---LELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVF 280
Query: 67 -DSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSP--PTIPP 123
EPFEF + VI+ DR + MKK EVA+ T PEYAYG S +PP
Sbjct: 281 LKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPP 340
Query: 124 DSTLVFEVEMISW 136
+ST+++EVE++S+
Sbjct: 341 NSTVIYEVELVSF 353
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 143/241 (59%), Gaps = 24/241 (9%)
Query: 45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVF 104
TP G +V+VHYTGTLLDG FDSS+ R + F+F LG+GQVIK WD+GI TMKK E A+F
Sbjct: 42 TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 101
Query: 105 TCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA-EDISPTHDGGIRREILEEGASFSTP 163
T PE AYG+ GSPPTIP ++TL F+VE++SW + DI+ DGGI ++IL+EG + P
Sbjct: 102 TIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIA--KDGGIFKKILKEGDKWENP 159
Query: 164 KDGANVEITLKGECE-GKVFQEGTFSFVLGEGSEYDIPEN-----LEKALEKFKYKEKSR 217
KD V + + E G V + EG E+ + + L KA++ K EK
Sbjct: 160 KDPDEVFVKYEARLEDGTVVSK-------SEGVEFTVKDGHLCPALAKAVKTMKKGEKVL 212
Query: 218 LFVQPQHLWSGKGNDKLG----VPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLK 273
L V+PQ+ + G G VP N + + +++ + ++ D+K+ + K+LK
Sbjct: 213 LAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT---EIGDDKKILK-KVLK 268
Query: 274 E 274
E
Sbjct: 269 E 269
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 122/248 (49%), Gaps = 23/248 (9%)
Query: 25 DLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQ 84
D+ DGG+ K+I G P +V V Y L DGTV S E EF + G
Sbjct: 138 DIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGH 193
Query: 85 VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP-----TIPPDSTLVFEVEMISWE-A 138
+ A + + TMKK E + KP+Y +G+ G P +PP+++LV ++E++SW+
Sbjct: 194 LCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTV 253
Query: 139 EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVF------QEGTFSFVL 191
+I D I +++L+E + P +GA V + + G+ + G VF ++ F F
Sbjct: 254 TEIG--DDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEF-- 309
Query: 192 GEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLW-SGKGNDKLGVPSNKPATYTITMNN 250
+ E + E L++A+ K E + + + P++ + S + VP N Y + + +
Sbjct: 310 -KTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVS 368
Query: 251 FEKIKDTW 258
F K K++W
Sbjct: 369 FVKDKESW 376
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 7/133 (5%)
Query: 8 SAVIDSKRIRMVESKAI-DLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVF 66
S VID + +V K + ++ DD +LK++ G P+ G V V TG L DGTVF
Sbjct: 240 SLVID---LELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVF 296
Query: 67 -DSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSP--PTIPP 123
EPFEF + VI+ DR + MKK EVA+ T PEYAYG S +PP
Sbjct: 297 LKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPP 356
Query: 124 DSTLVFEVEMISW 136
+ST+++EVE++S+
Sbjct: 357 NSTVIYEVELVSF 369
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Query: 24 IDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLG 81
ID+T DGGVLK IK G G P+ G VKVHY GTL +GT FDSS+ RG+ F F+LG
Sbjct: 6 IDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLG 65
Query: 82 KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDI 141
+G VIK WD G+ATM K EVA FT + +Y YG GSPP IP +TL+FEVE+ W AEDI
Sbjct: 66 RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSAEDI 125
Query: 142 SPTHDGGIRR 151
SP DG I R
Sbjct: 126 SPDRDGTILR 135
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 134 ISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVFQEG-----TF 187
+S E DI+P DGG+ + I +EG P G V++ G E G F F
Sbjct: 1 MSGEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQF 60
Query: 188 SFVLGEGS 195
SF LG G+
Sbjct: 61 SFNLGRGN 68
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 85/119 (71%)
Query: 29 DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
D GVLK IK G G TP G +V VHYTG LLDGT FDSS R + F FDLGKG+VIKA
Sbjct: 29 DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 88
Query: 89 WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDG 147
WD +ATMK E+ TCKPEYAYG GSPP IPP++TLVFEVE+ ++ ED++ DG
Sbjct: 89 WDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTDDEDG 147
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 134 ISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKG------ECEGKVFQEGTF 187
+ E DISP D G+ + I EG TP G V + G + + + ++ F
Sbjct: 17 LPLEGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKF 76
Query: 188 SFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTIT 247
SF LG+G ++ + + A+ K E R+ +P++ + G+ +P N + +
Sbjct: 77 SFDLGKG---EVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPP-KIPPNATLVFEVE 132
Query: 248 MNNF 251
+ F
Sbjct: 133 LFEF 136
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 82/121 (67%)
Query: 19 VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
+E I D GVLK IK G G P G +V VHYTG LLDGT FDSS R + F F
Sbjct: 24 MEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSF 83
Query: 79 DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
DLGKG+VIKAWD IATMK EV TCKPEYAYG GSPP IPP++TLVFEVE+ ++
Sbjct: 84 DLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 143
Query: 139 E 139
E
Sbjct: 144 E 144
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 137 EAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGE-CEGKVFQEGT-----FSFV 190
E DISP D G+ + I EG P G V + G +G F FSF
Sbjct: 25 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 84
Query: 191 LGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNN 250
LG+G ++ + + A+ K E + +P++ + G+ +P N + + +
Sbjct: 85 LGKG---EVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPP-KIPPNATLVFEVELFE 140
Query: 251 F 251
F
Sbjct: 141 F 141
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 82/121 (67%)
Query: 19 VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
+E I D GVLK IK G G P G +V VHYTG LLDGT FDSS R + F F
Sbjct: 20 MEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSF 79
Query: 79 DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
DLGKG+VIKAWD IATMK EV TCKPEYAYG GSPP IPP++TLVFEVE+ ++
Sbjct: 80 DLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 139
Query: 139 E 139
E
Sbjct: 140 E 140
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 137 EAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKG------ECEGKVFQEGTFSFV 190
E DISP D G+ + I EG P G V + G + + + ++ FSF
Sbjct: 21 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 80
Query: 191 LGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNN 250
LG+G ++ + + A+ K E + +P++ + G+ +P N + + +
Sbjct: 81 LGKG---EVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPP-KIPPNATLVFEVELFE 136
Query: 251 F 251
F
Sbjct: 137 F 137
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 77/111 (69%)
Query: 29 DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
D GVLK +K G G+ TP G KV VHY G L +G FDSS R EPF F LGKGQVIKA
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 89 WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
WD G+ATMKK E+ CKPEYAYG GS P IP ++TL FE+E++ ++ E
Sbjct: 94 WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 144
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 134 ISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVFQEGT-----F 187
++ + EDI+ D G+ + + G TP G V + KG+ GK F F
Sbjct: 22 VAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPF 81
Query: 188 SFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTIT 247
F LG+G + + + + K E L +P++ + G+ +PSN + I
Sbjct: 82 VFSLGKGQ---VIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP-KIPSNATLFFEIE 137
Query: 248 MNNFE 252
+ +F+
Sbjct: 138 LLDFK 142
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 77/111 (69%)
Query: 29 DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
D GVLK +K G G+ TP G KV VHY G L +G FDSS R EPF F LGKGQVIKA
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 89 WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
WD G+ATMKK E+ CKPEYAYG GS P IP ++TL FE+E++ ++ E
Sbjct: 94 WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 144
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 134 ISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVFQEGT-----F 187
++ + EDI+ D G+ + + G TP G V + KG+ GK F F
Sbjct: 22 VAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPF 81
Query: 188 SFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTIT 247
F LG+G + + + + K E L +P++ + G+ +PSN + I
Sbjct: 82 VFSLGKGQ---VIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATLFFEIE 137
Query: 248 MNNFE 252
+ +F+
Sbjct: 138 LLDFK 142
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 77/111 (69%)
Query: 29 DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
D GVLK +K G G+ TP G KV VHY G L +G FDSS R EPF F LGKGQVIKA
Sbjct: 18 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 89 WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
WD G+ATMKK E+ CKPEYAYG GS P IP ++TL FE+E++ ++ E
Sbjct: 78 WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 128
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 134 ISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVFQEGT-----F 187
++ + EDI+ D G+ + + G TP G V + KG+ GK F F
Sbjct: 6 VAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPF 65
Query: 188 SFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTIT 247
F LG+G + + + + K E L +P++ + G+ +PSN + I
Sbjct: 66 VFSLGKGQ---VIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP-KIPSNATLFFEIE 121
Query: 248 MNNFE 252
+ +F+
Sbjct: 122 LLDFK 126
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 77/111 (69%)
Query: 29 DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
D GVLK +K G G+ TP G KV VHY G L +G FDSS R EPF F LGKGQVIKA
Sbjct: 18 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 89 WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
WD G+ATMKK E+ CKPEYAYG GS P IP ++TL FE+E++ ++ E
Sbjct: 78 WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 128
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 134 ISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVFQEGT-----F 187
++ + EDI+ D G+ + + G TP G V + KG+ GK F F
Sbjct: 6 VTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPF 65
Query: 188 SFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTIT 247
F LG+G + + + + K E L +P++ + G+ +PSN + I
Sbjct: 66 VFSLGKGQ---VIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP-KIPSNATLFFEIE 121
Query: 248 MNNFE 252
+ +F+
Sbjct: 122 LLDFK 126
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 75/102 (73%)
Query: 34 KEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGI 93
K++ TPG G T P AG KV VHY G DG FDSS++RG+PF+F LG G+VIK WD+G+
Sbjct: 28 KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGV 87
Query: 94 ATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
ATM E A+FT + AYG++G PP IPP +TLVFEVE+++
Sbjct: 88 ATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/105 (51%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 35 EIKTPGVGD--TTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRG 92
++ T GD T P AG VHYTGTL DG VFDSS+TRG+PF F +G+G+VI+ WD G
Sbjct: 4 QVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEG 63
Query: 93 IATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
+A M + A C P+YAYG +G P IPP++TL F+VE++ E
Sbjct: 64 VAQMSVGQRAKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 68/107 (63%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P AG VHYTG L DG FDSS+ R +PF+F LGK +VI+ W+
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 68/107 (63%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L DG FDSS+ R +PF+F LGK +VI+ W+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP++TL+F+VE++ E
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPNATLIFDVELLKLE 107
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 67/107 (62%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L DG FDSS+ R +PF+F LGK +VI+ W+
Sbjct: 3 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 62
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 63 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 109
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 67/107 (62%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L DG FDSS+ R +PF+F LGK +VI+ W+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 66/107 (61%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L DG FDSS+ R +PF+F LGK +VI+ W
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 66/107 (61%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L DG FDSS+ R +PF+F LGK +VI+ W
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWA 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Query: 24 IDLTDDGGVLKEIKTPGVG--DTTPSAGCKVKVHYTGTL-LDGTVFDSSKTRGEPFEFDL 80
+ LT+DGGV+K I G G + P G +V VHY G L G VFDSS+ R PF+F L
Sbjct: 9 VHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHL 68
Query: 81 GKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
G+G+VIK WD +A+M K+E +Y YG++G +IP +S L+FE+E+IS+
Sbjct: 69 GQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 139 EDISPTHDGGIRREILE--EGASFSTPKDGANVEITLKGECE--GKVFQEGT-----FSF 189
E + T DGG+ + IL EG + PK G V + G+ E GKVF F F
Sbjct: 7 EQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKF 66
Query: 190 VLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLG--VPSNKPATYTIT 247
LG+G ++ + + + EK + + ++ G G + G +P N + I
Sbjct: 67 HLGQG---EVIKGWDICVASMTKNEKCSVRLDSKY---GYGEEGCGESIPGNSVLIFEIE 120
Query: 248 MNNF 251
+ +F
Sbjct: 121 LISF 124
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 65/103 (63%)
Query: 35 EIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIA 94
E +PG G T P G VHYTG L DG FDSS+ R +PF+F LGK +VI+ W+ G+A
Sbjct: 5 ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 95 TMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 65 QMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 66/107 (61%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L DG DSS+ R +PF+F LGK +VI+ W+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 67/107 (62%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L DG FDSS+ + +PF+F LGK +VI+ W+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGVPGIIPPHATLVFDVELLKLE 107
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 66/107 (61%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L DG DSS+ R +PF+F LGK +VI+ W+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 103 bits (257), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/106 (50%), Positives = 67/106 (63%)
Query: 29 DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
+G V + +PG G T P G V +HYTGTL +G FDSS RG PF+ ++G GQVIK
Sbjct: 5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64
Query: 89 WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
WD GI + E A T YAYG +G P IPP+STLVF+VE++
Sbjct: 65 WDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 67/107 (62%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L DG FDSS+ R +PF+F LGK +VI+ ++
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 66/107 (61%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L DG FDSS+ R +PF+F LGK +VI+ +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L +G FDSS+ R +PF+F +GK +VIK ++
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G A M + A TC P+ AYG G P IPP++TL+F+VE+++ E
Sbjct: 61 EGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 107
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 10 VIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS 69
+I++ R ++ S + T + G+ E T G G AG V VHYTG L DG FDSS
Sbjct: 86 IIEAHREQIGGSTVV--TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSS 142
Query: 70 KTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVF 129
K R +PFEF LG G VIK WD G+ MK V T P+ YG +G+ IPP++TLVF
Sbjct: 143 KDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVF 202
Query: 130 EVEMI 134
EVE++
Sbjct: 203 EVELL 207
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 10 VIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS 69
+I++ R ++ S + T + G+ E T G G AG V VHYTG L DG FDSS
Sbjct: 86 IIEAHREQIGGSTVV--TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSS 142
Query: 70 KTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVF 129
K R +PF F LG G VIK WD G+ MK V T P+ YG +G+ IPP++TLVF
Sbjct: 143 KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVF 202
Query: 130 EVEMI 134
EVE++
Sbjct: 203 EVELL 207
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 10 VIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS 69
+I++ R ++ S + T + G+ E T G G AG V VHYTG L DG FDSS
Sbjct: 86 IIEAHREQIGGSTVV--TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSS 142
Query: 70 KTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVF 129
K R +PF F LG G VIK WD G+ MK V T P+ YG +G+ IPP++TLVF
Sbjct: 143 KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVF 202
Query: 130 EVEMI 134
EVE++
Sbjct: 203 EVELL 207
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 99.0 bits (245), Expect = 5e-21, Method: Composition-based stats.
Identities = 53/109 (48%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 26 LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQV 85
+T + G+ E T G G AG V VHYTG L DG FDSSK R +PF F LG G V
Sbjct: 24 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 82
Query: 86 IKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
IK WD G+ MK V T P+ YG +G+ IPP++TLVFEVE++
Sbjct: 83 IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 131
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 10 VIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS 69
+I++ R ++ S + T + G+ E T G G AG V VHYTG L DG FDSS
Sbjct: 86 IIEAHREQIGGSTIV--TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSS 142
Query: 70 KTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVF 129
K R +PF F LG G VIK WD G+ MK V T P+ YG +G+ IPP++TLVF
Sbjct: 143 KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVF 202
Query: 130 EVEMI 134
EVE++
Sbjct: 203 EVELL 207
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 98.6 bits (244), Expect = 7e-21, Method: Composition-based stats.
Identities = 53/109 (48%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 26 LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQV 85
+T + G+ E T G G AG V VHYTG L DG FDSSK R +PF F LG G V
Sbjct: 4 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHV 62
Query: 86 IKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
IK WD G+ MK V T P+ YG +G+ IPP++TLVFEVE++
Sbjct: 63 IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 111
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 97.8 bits (242), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/109 (48%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 26 LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQV 85
+T + G+ E T G G AG V VHYTG L DG FDSSK R +PF F LG G V
Sbjct: 8 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 66
Query: 86 IKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
IK WD G+ MK V T P+ YG +G+ IPP++TLVFEVE++
Sbjct: 67 IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 115
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 10 VIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS 69
+I++ R ++ S + T + G+ E T G G AG V VHYTG L DG F SS
Sbjct: 86 IIEAHREQIGGSTVV--TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFGSS 142
Query: 70 KTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVF 129
K R +PF F LG G VIK WD G+ MK V T P+ YG +G+ IPP++TLVF
Sbjct: 143 KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVF 202
Query: 130 EVEMI 134
EVE++
Sbjct: 203 EVELL 207
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 20 ESKAIDLTDDGGVLKEIKTPG--VGDTTPSAGCKVKVHYTGTLLD-GTVFDSSKTRGEPF 76
E + ++LT DGGV+K I G + P G +V VHY G L G VFDSS R PF
Sbjct: 6 EFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPF 65
Query: 77 EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
+F L +G+VIK WD +++M+K+E + + Y YG +G +IP +S L+FE+E++S+
Sbjct: 66 KFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 20 ESKAIDLTDDGGVLKEIKTPG--VGDTTPSAGCKVKVHYTGTLLD-GTVFDSSKTRGEPF 76
E + ++LT DGGV+K I G + P G +V VHY G L G VFDSS R PF
Sbjct: 6 EFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPF 65
Query: 77 EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
+F L +G+VIK WD +++M+K+E + + Y YG +G +IP +S L+FE+E++S+
Sbjct: 66 KFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 1/144 (0%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFD-GGFEGEQETERKKTLTACHLNAAMCLLK 330
LK G T+FK +E+A + Y K + Y++ E + + +C LN C LK
Sbjct: 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285
Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390
+ + A D C +A+E++P+N KA +RR + L E + A D +K +I P +KA
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 391 KLTQTKQKLREQKIKEKQVYANMF 414
+L + KQK++ QK KEK YA MF
Sbjct: 346 ELLKVKQKIKAQKDKEKAAYAKMF 369
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 56/86 (65%)
Query: 52 VKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYA 111
+ +HYTG L DGT FDSS + +PF F LG GQVIK WD+G+ M + E E
Sbjct: 12 LHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELG 71
Query: 112 YGKQGSPPTIPPDSTLVFEVEMISWE 137
YG++G+PP IP +TLVFEVE++ E
Sbjct: 72 YGERGAPPKIPGGATLVFEVELLKIE 97
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 88.2 bits (217), Expect = 9e-18, Method: Composition-based stats.
Identities = 53/109 (48%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 26 LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQV 85
+T + G+ E T G G AG V VHYTG L DG FDSSK R +PF F LG G V
Sbjct: 4 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 62
Query: 86 IKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
IK WD G+ MK V T P+ YG G+ IPP++TLVFEVE++
Sbjct: 63 IKGWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGVIPPNATLVFEVELL 111
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 10/103 (9%)
Query: 42 GDTT--PSAGCKVKVHYTGTLLDGTVFDSS-------KTRGEPFEFDLGKGQVIKAWDRG 92
GD T P G V YTGTL DGTVFD++ K +P F +G G+VI+ WD
Sbjct: 14 GDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEA 73
Query: 93 IATMKKDEVAVFTCKPEYAYGKQGSPPT-IPPDSTLVFEVEMI 134
+ TM K E A +PE+AYGK+G P IPP++ L+FEVE++
Sbjct: 74 LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 42 GDTT--PSAGCKVKVHYTGTLLDGTVFDSS-------KTRGEPFEFDLGKGQVIKAWDRG 92
GD T P G V YTGTL DGTVFD++ K +P F +G G+VI+ WD
Sbjct: 11 GDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEA 70
Query: 93 IATMKKDEVAVFTCKPEYAYGKQGSPPT-IPPDSTLVFEVEMI 134
+ TM K E A +PE+AYGK+G P IPP++ L FEVE++
Sbjct: 71 LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 151 REILEEGASFSTPKDGANVEITLKGECE-GKVFQEGT------------FSFVLGEGSEY 197
+ +L++G + PK G V G + G VF SF +G G
Sbjct: 5 KSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGK-- 62
Query: 198 DIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE 252
+ ++AL EK+RL ++P+ + KG +P N T+ + + + +
Sbjct: 63 -VIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID 116
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 5/184 (2%)
Query: 236 VPSNKPATYTITMNNFEKIKD---TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNY 292
VP Y + + F++ K+ + +E++ K G + FK++K E A + Y
Sbjct: 143 VPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQY 202
Query: 293 KKAIPYL--DFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350
+ AI Y+ DF G+ + CHLN A CL+KLK+ A C+ + E
Sbjct: 203 EMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262
Query: 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVY 410
N KA FRRG A +L + + A DF+K + P++KA ++L ++ + K+K++Y
Sbjct: 263 NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322
Query: 411 ANMF 414
+F
Sbjct: 323 KGIF 326
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 29 DGGVLKEIKTPGVGDTTPSAGCKVKVHYTG-TLLDGTVFDSSKTRGEPFEFDLGK-GQVI 86
D V K+I G G + PS +HY T F+ + +P E LGK + +
Sbjct: 48 DEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKEL 106
Query: 87 KAWDRGIATMKKDEVAVFTCKPEYAYGKQG--SPPTIPPDSTLVFEVEMISWE 137
G+A+MK E A+ E AYGK+G S P +PP + L++EVE+I ++
Sbjct: 107 AGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFD 159
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
T G++ ++ G G+ P V V+Y GTL+DG FD+S TRGEP F L VI
Sbjct: 118 TSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VI 174
Query: 87 KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
W G+ +KK PE AYGK G P IPP+STLVF+VE++
Sbjct: 175 PGWTEGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
T G++ ++ G G+ P V V+Y GTL+DG FD+S TRGEP F L VI
Sbjct: 118 TSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVI 174
Query: 87 KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPT 144
W G+ +KK PE AYGK G P IPP+STLVF+VE++ D+ P
Sbjct: 175 PGWTEGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPPNSTLVFDVELL-----DVKPA 226
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 78.6 bits (192), Expect = 7e-15, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 19 VESKAIDLTDDGGVLKEIKTPGVGD-TTPSAGCKVKVHYTGTL--LDGTVFDSSKTRGEP 75
+ + +D++ D GVLK++ G GD P A VK Y+G L +D FDS+ R P
Sbjct: 15 LSQRMLDISGDRGVLKDVIREGAGDLVAPDASVLVK--YSGYLEHMDRP-FDSNYFRKTP 71
Query: 76 FEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
LG+ + + G+ +M++ E+A F KP YAYG G PP IPP++T++FE+E++
Sbjct: 72 RLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLD 131
Query: 136 W 136
+
Sbjct: 132 F 132
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 40 GVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKD 99
G G P+ K +VHYTG L DGTVFDSS+ RG+P F +VIK W + M++
Sbjct: 47 GSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGWTEALQLMREG 104
Query: 100 EVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
+ + AYG G IPP S L F+VE+IS
Sbjct: 105 DRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 49 GCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDR------GIATMKKDEVA 102
G +K HY G L +G VFDSS RG+P F +G G+VIK WD+ GI M
Sbjct: 30 GQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKR 89
Query: 103 VFTCKPEYAYGKQGS-----PPTIPPDSTLVFEVEMI 134
PE AYG +G+ IPP S L+F++E I
Sbjct: 90 TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK 332
K G Y+KQ ++ A Y+KA+ E + N K
Sbjct: 13 KNLGNAYYKQGDYQKAIEYYQKAL---------------ELDPNNASAWYNLGNAYYKQG 57
Query: 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392
+ A + KA+EL+PNN KA++RRGNAY + + A +D+QK L++DPNN A Q L
Sbjct: 58 DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Query: 393 TQTKQK 398
KQK
Sbjct: 118 GNAKQK 123
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392
N+ +A+ GNAY + + A + +QK L++DPNN +A L
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNL 49
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 255 KDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERK 314
K + +EK++ +KE G +FK+++ A YK+A+ + ++ + ++K
Sbjct: 24 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 83
Query: 315 KTL-TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEK 373
K + +C+LN A C K K A D K ++++ NN KA ++ G A + E A++
Sbjct: 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143
Query: 374 DFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK 416
+ K ++PNN KL+E + K+K + MFDK
Sbjct: 144 NLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 24 IDLTDDGGVLKEIKTPGV-GDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEP-FEFDLG 81
+D+ +G + K+ PG G + P G V VH +L +GT + + EP F LG
Sbjct: 5 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT-----RVQEEPELVFTLG 59
Query: 82 KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEM 133
VI+A D + M E A+ T +Y YG QG P IPP + L EV +
Sbjct: 60 DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 111
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 24 IDLTDDGGVLKEIKTPGV-GDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEP-FEFDLG 81
+D+ +G + K+ PG G + P G V VH +L +GT + + EP F LG
Sbjct: 7 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT-----RVQEEPELVFTLG 61
Query: 82 KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEM 133
VI+A D + M E A+ T +Y YG QG P IPP + L EV +
Sbjct: 62 DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 113
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 39 PGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKK 98
PG DT V V YTG L+DGTVFDS++ G+P F + QVI W + M
Sbjct: 121 PGKSDT-------VTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPA 171
Query: 99 DEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
AYG + I P+ TL+F++ +IS
Sbjct: 172 GSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 36 IKTPGVGDTTPSAGCKVKVHYTGTL-LDGTVFDSSK--TRGEPFEFDLGKGQVIKAWDRG 92
++ P + G + VHY G L DG++F S+ G+P F LG + +K WD+G
Sbjct: 19 LQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQG 78
Query: 93 IATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
+ M E P YGK+G IPP+STL+F ++++
Sbjct: 79 LKGMCVGEKRKLIIPPALGYGKEGK-GKIPPESTLIFNIDLL 119
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
G+L TPG G P A +V+V Y G L DG +FD S T+ + F D VI W
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS-TQPQWFRLD----SVISGWT 171
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
+ M + AYG +G+ I P + LVFE+E+I+
Sbjct: 172 SALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 39 PGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKK 98
PG DT V V YTG L+DGTVFDS++ G+P F + QVI W + M
Sbjct: 45 PGKSDT-------VTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPA 95
Query: 99 DEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
AYG + I P+ TL+F++ +IS
Sbjct: 96 GSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
G Y+KQ ++ A Y+KA+ E N K
Sbjct: 16 GNAYYKQGDYDEAIEYYQKAL---------------ELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395
A + KA+EL+PNN +A++ GNAY + + A + +QK L++DPNN A Q L
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Query: 396 KQK 398
KQK
Sbjct: 121 KQK 123
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398
N+ +A++ GNAY + + A + +QK L++DPNN A L K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 55
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 24 IDLTDDGGVLKEIKTPGV-GDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEP-FEFDLG 81
+D+ +G + K+ PG G + P G V VH +L +GT + + EP F LG
Sbjct: 11 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT-----RVQEEPELVFTLG 65
Query: 82 KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS-PPTIPPDSTLVFEVEM 133
VI+A D + M E A+ T +Y YG QGS P IPP + L EV +
Sbjct: 66 DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 118
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 24 IDLTDDGGVLKEIKTPGV-GDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEP-FEFDLG 81
+D+ +G + K+ PG G + P G V VH +L +GT + + EP F LG
Sbjct: 37 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT-----RVQEEPELVFTLG 91
Query: 82 KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS-PPTIPPDSTLVFEVEM 133
VI+A D + M E A+ T +Y YG QGS P IPP + L EV +
Sbjct: 92 DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 144
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK 332
K +G YFK+ + A R+Y +A+ +R + N A CL KL
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAV---------------KRDPENAILYSNRAACLTKLM 61
Query: 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ + A D CD I L+ K + R+ + + E A++ ++ LQ+DP+N+ A
Sbjct: 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398
KA+EL+PNN +A++ GNAY + + A + +QK L++DPNN A Q L KQK
Sbjct: 34 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398
N+ +A++ GNAY + + A + +QK L++DPNN A L K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 55
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
G Y+KQ ++ A Y+KA+ E N K
Sbjct: 16 GNAYYKQGDYDEAIEYYQKAL---------------ELYPNNAEAWYNLGNAYYKQGDYD 60
Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395
A + KA+EL PNN +A++ GNAY + + A + +QK L++ PNN A Q L
Sbjct: 61 EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120
Query: 396 KQK 398
KQK
Sbjct: 121 KQK 123
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398
N+ +A++ GNAY + + A + +QK L++ PNN A L K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYK 55
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 4/163 (2%)
Query: 256 DTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE--GEQE-TE 312
D W + ++EK + L+ + G +++ + A Y AI L E G E +
Sbjct: 1 DPWAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQ 60
Query: 313 RKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAE 372
+ +T LN C L +++ D C + +N KA+F+RG A+ + + A+
Sbjct: 61 LDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQ 120
Query: 373 KDFQKVLQIDPNNKAAVQK-LTQTKQKLREQKIKEKQVYANMF 414
DF KVL++DP V + L + ++R++ ++K + +F
Sbjct: 121 ADFAKVLELDPALAPVVSRELQALEARIRQKDEEDKARFRGIF 163
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 15/142 (10%)
Query: 260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
L S+E + + LK G K + FE A Y KAI E +
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAI-------------ELNPANAVYF 49
Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
C N A KL A C++AI ++P KA+ R G A LN+ A ++K L
Sbjct: 50 C--NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107
Query: 380 QIDPNNKAAVQKLTQTKQKLRE 401
++DP+N+ L + KLRE
Sbjct: 108 ELDPDNETYKSNLKIAELKLRE 129
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 4/156 (2%)
Query: 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE--GEQE-TERKKTLTA 319
D+KL+ + L+++G F Q ++ A Y+ A+ LD E GE E E +
Sbjct: 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
+ N + C L + A++ + ++ E NEKA FRR A + + + AE+D + +L
Sbjct: 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 380 QIDPNNKAAV-QKLTQTKQKLREQKIKEKQVYANMF 414
+ P + V +++ ++ E+K + Y+ MF
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 49 GCKVKVHYTGTLLD--GTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106
G K HY D GTV D S+ RG+P E +GK + W+ + TM++ E+A F C
Sbjct: 30 GTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFLC 89
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE--GEQE-TERKKTLT 318
++EK + L+ + G +++ + A Y AI L E G E + + +T
Sbjct: 1 AEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQIT 60
Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
LN C L +++ D C + +N KA+F+RG A+ + + A+ DF KV
Sbjct: 61 PLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKV 120
Query: 379 LQIDPNNKAAVQKLTQ 394
L++DP V + Q
Sbjct: 121 LELDPALAPVVSRELQ 136
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 29 DGGVLKEIKTPGVGDTTPSAGCKVKVHYTG-TLLDGTVFDSSKTRGEPFEFDLGK-GQVI 86
D V K+I G G + PS +HY T F+ + +P E LGK + +
Sbjct: 48 DEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKEL 106
Query: 87 KAWDRGIATMKKDEVAVFTCKPEYAYGKQG--SPPTIPPDSTLVFEVEMISWE 137
G+A+MK E A+ E AYGK+G S P +PP + L++EVE+I ++
Sbjct: 107 AGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFD 159
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
H N A C LKL+ A+ + KAIE + + KA +RR A L + A D Q+ +
Sbjct: 68 HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127
Query: 381 IDPNNKAAVQKL 392
++P NK + L
Sbjct: 128 LEPKNKVFQEAL 139
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 49 GCKVKVHYTGTLLDGTVFDSS-----KTRG--------EPFEFDLGKGQVIKAWDRGIAT 95
G K+KV Y G L G VFD+S K G EP EF +G+GQ+I+ ++ +
Sbjct: 5 GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64
Query: 96 MKKDEVAVFTCKPEYAYGKQ 115
M+ + E AYG +
Sbjct: 65 MEVGDEKTVKIPAEKAYGNR 84
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 16/144 (11%)
Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAA 325
L++ + LK + YFK +E A + Y +AI + + G N +
Sbjct: 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG---------------NRS 47
Query: 326 MCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
+ L+ + A +AIEL+ K ++RR + + L + A +D++ V+++ P++
Sbjct: 48 LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107
Query: 386 KAAVQKLTQTKQKLREQKIKEKQV 409
K A K Q K+ +QK E+ +
Sbjct: 108 KDAKMKY-QECNKIVKQKAFERAI 130
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
+D L++ + LK + YFK +E A + Y +AI + + G
Sbjct: 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG-------------- 51
Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
N ++ L+ + A +AIEL+ K ++RR + + L + A +D++ V+++
Sbjct: 52 -NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110
Query: 382 DPNNKAAVQKLTQTKQKLREQKIKEKQV 409
P++K A K Q K+ +QK E+ +
Sbjct: 111 KPHDKDAKMKY-QECNKIVKQKAFERAI 137
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
+D L++ + LK + YFK +E A + Y +AI + + G
Sbjct: 14 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG-------------- 59
Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
N ++ L+ + A + +AIEL+ K ++RR + + L + A +D++ V+++
Sbjct: 60 -NRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 118
Query: 382 DPNNKAAVQKLTQTKQKLREQ 402
P++K A K + + ++++
Sbjct: 119 KPHDKDAKMKYQECNKIVKQK 139
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
LKE+G F K+ A Y +AI R + + N A+C LK+
Sbjct: 12 LKEQGNRLFVGRKYPEAAACYGRAI---------------TRNPLVAVYYTNRALCYLKM 56
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
+Q + A C +A+EL+ + KA F G L++ + A + Q+ +
Sbjct: 57 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 50 CKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPE 109
V VH+T L DGT +S++ G+P F LG + + ++ + +K + F+ +P+
Sbjct: 29 SAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPD 88
Query: 110 YAYG 113
A+G
Sbjct: 89 AAFG 92
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
LKE+G F K+ A Y +AI R + + N A+C LK+
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYYTNRALCYLKM 51
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
+Q + A C +A+EL+ + KA F G L++ + A + Q+ +
Sbjct: 52 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
G Y+KQ ++ A Y+KA+ E N K
Sbjct: 8 GNAYYKQGDYDEAIEYYQKAL---------------ELDPRSAEAWYNLGNAYYKQGDYD 52
Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A + KA+EL+P + +A++ GNAY + + A + +QK L++DP + A
Sbjct: 53 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
G Y+KQ ++ A Y+KA+ E N K
Sbjct: 42 GNAYYKQGDYDEAIEYYQKAL---------------ELDPRSAEAWYNLGNAYYKQGDYD 86
Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
A + KA+EL+P + +A++ GNAY + + A + +QK L++DP +
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 67/180 (37%), Gaps = 18/180 (10%)
Query: 227 SGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFE 286
S + ++ L VP + + E+I + L DE+ +LL ERG Y D
Sbjct: 4 SWRKSEVLAVPLQPTLQQEVILARXEQILASRALTDDER---AQLLYERGVLY---DSLG 57
Query: 287 LACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346
L +A+ DF + +L A A + D +E
Sbjct: 58 L------RALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNF------DAAYEAFDSVLE 105
Query: 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406
L+P A RG A +LA+ D Q DPN+ L +QKL E++ KE
Sbjct: 106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 165
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
DKA++L+ NN ++ RG L + A KDF K ++DP N
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
LK++G +F+ K++ A + Y A+ E +++ L+AC+++
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWAL---------ELKEDPVFYSNLSACYVSVG------ 53
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNA 361
K + KA+EL+P+ K RR +A
Sbjct: 54 -DLKKVVEMSTKALELKPDYSKVLLRRASA 82
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 291 NYKKAIPYLDFDGGFEGEQETERK-----------KTLTACHLNAAMCLLKLKQAKPAKD 339
N + AIPY++F E ER + + A + + K AKD
Sbjct: 53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKD 112
Query: 340 QCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+KA+ N F+ G + L +P+LA Q+ ++++ N+ A
Sbjct: 113 MFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 15/140 (10%)
Query: 251 FEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQE 310
+++ KD ++ +E G L GT K ++ +LA +PYL ++
Sbjct: 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA-------LPYL--------QRA 151
Query: 311 TERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPEL 370
E + T MCL A Q E +P + AF+ G Y E
Sbjct: 152 VELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREK 211
Query: 371 AEKDFQKVLQIDPNNKAAVQ 390
A + K + I P++ A+
Sbjct: 212 ALEMLDKAIDIQPDHMLALH 231
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 35.0 bits (79), Expect = 0.090, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
KA+EL+P + +A++ GNAY + + A + +QK L++DP +
Sbjct: 28 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 70
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
HL LL Q A Q A++ +P+N A++RR +L + + + A D KV+Q
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88
Query: 381 IDPNNKAA 388
+ + AA
Sbjct: 89 LKMDFTAA 96
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 21/156 (13%)
Query: 249 NNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFE-LACRNYKKAIPYLDFDGGFEG 307
++F+K+ + ++EK Q +L+K + +Y AI +LD
Sbjct: 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD------- 167
Query: 308 EQETERKKTLTACHLNA------AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA 361
K L C +A A C +K + + A A +L+ +N +AF++
Sbjct: 168 -------KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220
Query: 362 YLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397
Y L + EL+ + ++ L++D ++K Q K+
Sbjct: 221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
A L + ++K A K I+L+ + A +RG+ L + + AE DF+KVL+ +P+
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 385 ---NKAAVQKLTQTK--QKLREQKI 404
K A +L ++ Q+LR Q +
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQAL 151
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE--PELAEKDFQKV 378
+ N A L KL A C+KAIE +PN +A+ R+ A + + E L D +
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100
Query: 379 LQIDPNNKAAVQKLTQTKQKLREQKI 404
+ NN ++ +++ Q K +Q+
Sbjct: 101 KDAEVNNGSSAREIDQLYYKASQQRF 126
>pdb|2SFA|A Chain A, Serine Proteinase From Streptomyces Fradiae Atcc 14544
Length = 191
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 227 SGKGNDKLG--VPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDK 284
+G G LG V S+ ATY +T + +I TW NS + LL R T F +
Sbjct: 10 AGGGRCSLGFNVRSSSGATYALTAGHCTEIASTWYTNSGQT----SLLGTRAGTSFPGND 65
Query: 285 FEL 287
+ L
Sbjct: 66 YGL 68
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
KA++L P ++ RG Y L + + A++DFQK ++P N
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
LK RG +F F A + Y+ AI E + N + C +
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAI---------------ELDPNEPVFYSNISACYIST 72
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNA 361
+ + KA+E++P++ KA RR +A
Sbjct: 73 GDLEKVIEFTTKALEIKPDHSKALLRRASA 102
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
KA++L P ++ RG Y L + + A++DFQK ++P N
Sbjct: 297 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 339
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
HL LL Q A Q A++ +P+N A++RR +L + + A D KV+Q
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQ 88
Query: 381 IDPNNKAA 388
+ + AA
Sbjct: 89 LKXDFTAA 96
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 21/156 (13%)
Query: 249 NNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFE-LACRNYKKAIPYLDFDGGFEG 307
++F+K+ + ++EK Q +L+K + +Y AI +LD
Sbjct: 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEXQRLRSQALNAFGSGDYTAAIAFLD------- 167
Query: 308 EQETERKKTLTACHLNA------AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA 361
K L C +A A C +K + + A A +L+ +N +AF++
Sbjct: 168 -------KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220
Query: 362 YLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397
Y L + EL+ + ++ L++D ++K Q K+
Sbjct: 221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
A L ++K A K I+L+ + A +RG+ L + + AE DF+KVL+ +P+
Sbjct: 67 ATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 385 ---NKAAVQKLTQT--KQKLREQKI 404
K A +L ++ Q+LR Q +
Sbjct: 127 ENEEKEAQSQLIKSDEXQRLRSQAL 151
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK 330
++K +G F++ + A ++Y +AI +R + N A C K
Sbjct: 18 MVKNKGNECFQKGDYPQAMKHYTEAI---------------KRNPKDAKLYSNRAACYTK 62
Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV 389
L + + A C++ I+LEP K + R+ A + + A +QK L +D + K A
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 121
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE--PELAEKDFQKV 378
+ N A L KL A C+KAIE +PN +A+ R+ A + + E L D +
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 379 LQIDPNNKAAVQKLTQ 394
+ NN ++ +++ Q
Sbjct: 236 KDAEVNNGSSAREIDQ 251
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 291 NYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA------AMCLLKLKQAKPAKDQCDKA 344
+Y AI +LD K L C +A A C +K + + A A
Sbjct: 135 DYTAAITFLD--------------KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180
Query: 345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397
+L+ +N +AF++ Y L + EL+ + ++ L++D ++K Q K+
Sbjct: 181 SKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 233
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
HL LL Q A Q A++ +P+N A++RR +L + + A D KV+
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIA 65
Query: 381 IDPNNKAA 388
+ + AA
Sbjct: 66 LKXDFTAA 73
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
A L ++K A K I L+ + A +RG+ L + + AE DF+KVL+ +P+
Sbjct: 44 ATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103
Query: 385 ---NKAAVQKLTQT--KQKLREQKI 404
K A +L + Q+LR Q +
Sbjct: 104 EQEEKEAESQLVKADEXQRLRSQAL 128
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 16/95 (16%)
Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ 402
K ++ +PNN + + G Y+D+ P A + +K + +D + A L + E+
Sbjct: 30 KVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK 89
Query: 403 K---------IKEKQVYAN-------MFDKFAKHD 421
+ I VYA+ ++D +HD
Sbjct: 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHD 124
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 49 GCKVKVHYTGTLLDGTVFDSS-----KTRG--------EPFEFDLGKGQVIKAWDRGIAT 95
G VK+ Y G +DG +FD++ K G P G+GQV+ D I
Sbjct: 5 GKMVKISYDG-YVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63
Query: 96 MKKDEVAVFTCKPEYAYGKQ 115
M E PE A+GK+
Sbjct: 64 MDVGEEREVVLPPEKAFGKR 83
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 30/177 (16%)
Query: 262 SDEKLEQGKLLKER----GTTYFKQDKFELACRNYKKAI---PYLDFDGGF--------- 305
S ++Q LL E G Y ++ + + A +Y+ A+ P DF G+
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP--DFIDGYINLAAALVA 113
Query: 306 EGEQETERKKTLTACHLNAAM-C-------LLK-LKQAKPAKDQCDKAIELEPNNEKAFF 356
G+ E + ++A N + C LLK L + + AK KAIE +PN A+
Sbjct: 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 357 RRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANM 413
G + E LA F+K + +DPN A L L+E +I ++ V A +
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV---LKEARIFDRAVAAYL 227
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 49 GCKVKVHYTGTLLDGTVFDSS-----KTRG--------EPFEFDLGKGQVIKAWDRGIAT 95
G VK+ Y G +DG +FD++ K G P G+GQV+ D I
Sbjct: 5 GKMVKISYDG-YVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63
Query: 96 MKKDEVAVFTCKPEYAYGKQ 115
M E PE A+GK+
Sbjct: 64 MDVGEEREVVLPPEKAFGKR 83
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 65 VFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYG 113
V DS+ ++ EP EF +G Q+I ++ + + E PE AYG
Sbjct: 27 VLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYG 74
>pdb|1KXV|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|D Chain D, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 121
Score = 28.9 bits (63), Expect = 6.2, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 95 TMKKDEVAVFTCKPEYAYGKQGSP 118
++K D+ A++ CKP YG G P
Sbjct: 84 SLKPDDTAMYYCKPSLRYGLPGCP 107
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
Angstrom Resolution And Biochemical Characterizations Of
The A128v Mutant Implicated In Chronic Granulomatous
Disease
Length = 213
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 239 NKPATYTITMNNFEKIKD-TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIP 297
N YTI N E K T +N D+ L +RG Y++ +K++LA ++ K+A+
Sbjct: 42 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF--QRGMLYYQTEKYDLAIKDLKEALI 99
Query: 298 YL 299
L
Sbjct: 100 QL 101
>pdb|1WM5|A Chain A, Crystal Structure Of The N-Terminal Tpr Domain (1-203) Of
P67phox
Length = 208
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 239 NKPATYTITMNNFEKIKD-TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIP 297
N YTI N E K T +N D+ L +RG Y++ +K++LA ++ K+A+
Sbjct: 47 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF--QRGMLYYQTEKYDLAIKDLKEALI 104
Query: 298 YL 299
L
Sbjct: 105 QL 106
>pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|B Chain B, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|C Chain C, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|D Chain D, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
Length = 330
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 208 EKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLE 267
EK+++K K ++ P + S G +G SN Y I + EK W+ +++ +
Sbjct: 128 EKWRFKTKKAIYATP--IVSEDGTIYVG--SNDNYLYAINPDGTEK----WRFKTNDAIT 179
Query: 268 QGKLLKERGTTYFKQDK 284
+ + GT YF DK
Sbjct: 180 SAASIGKDGTIYFGSDK 196
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK 330
LL E G F + + A +++ A+ + + Q E+ T +L A K
Sbjct: 477 LLNELGVVAFNKSDMQTAINHFQNALLLV------KKTQSNEKPWAATWANLGHAY--RK 528
Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
LK A D ++ + L N+ YL P LA + L I PN
Sbjct: 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582
>pdb|2XNJ|A Chain A, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
pdb|2XNJ|B Chain B, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
Length = 266
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 222 PQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKER 275
P + SG+ +G+P NK ++ + N + ++DT QL + + + K L+ R
Sbjct: 205 PALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETR-QMTKHLRRR 257
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
Length = 203
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 239 NKPATYTITMNNFEKIKD-TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIP 297
N YTI N E K T +N D+ L +RG Y++ +K++LA ++ K+A+
Sbjct: 42 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF--QRGMLYYQTEKYDLAIKDLKEALI 99
Query: 298 YL 299
L
Sbjct: 100 QL 101
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
++ + L+ + AK KA+E++P++ A + EP+LA+++++K L
Sbjct: 52 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL 111
Query: 380 QIDPNN 385
D N
Sbjct: 112 ASDSRN 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,249,935
Number of Sequences: 62578
Number of extensions: 692868
Number of successful extensions: 1464
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1200
Number of HSP's gapped (non-prelim): 217
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)