Query psy4385
Match_columns 473
No_of_seqs 518 out of 4917
Neff 9.4
Searched_HMMs 46136
Date Sat Aug 17 00:10:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543|consensus 100.0 1.2E-67 2.5E-72 496.3 37.5 365 38-428 1-367 (397)
2 KOG0545|consensus 100.0 1E-33 2.2E-38 247.5 17.0 311 27-415 7-328 (329)
3 KOG0544|consensus 100.0 5E-30 1.1E-34 188.5 12.1 106 31-136 2-107 (108)
4 COG0545 FkpA FKBP-type peptidy 100.0 3.4E-28 7.3E-33 209.0 12.9 107 27-136 98-204 (205)
5 KOG0543|consensus 99.9 1.1E-26 2.4E-31 219.5 20.5 262 29-383 83-357 (397)
6 KOG0549|consensus 99.9 9.2E-26 2E-30 189.3 13.7 111 28-138 66-177 (188)
7 KOG0549|consensus 99.9 1.3E-24 2.8E-29 182.4 14.7 169 78-254 1-178 (188)
8 PRK11570 peptidyl-prolyl cis-t 99.9 2.8E-24 6E-29 192.3 14.5 115 16-136 91-205 (206)
9 TIGR03516 ppisom_GldI peptidyl 99.9 1.1E-22 2.4E-27 177.6 14.8 110 26-137 65-176 (177)
10 KOG0552|consensus 99.9 2.7E-22 5.9E-27 177.4 12.2 107 27-136 117-225 (226)
11 PRK10902 FKBP-type peptidyl-pr 99.9 3.2E-21 6.9E-26 178.9 14.7 118 14-138 133-250 (269)
12 PF00254 FKBP_C: FKBP-type pep 99.8 1.1E-20 2.3E-25 149.7 11.3 93 42-134 1-94 (94)
13 KOG0553|consensus 99.8 1.1E-20 2.3E-25 172.2 11.1 125 264-403 76-200 (304)
14 KOG0544|consensus 99.8 1.2E-19 2.7E-24 133.8 9.7 99 149-251 3-107 (108)
15 KOG4234|consensus 99.8 7.9E-19 1.7E-23 150.0 14.1 133 265-407 91-223 (271)
16 COG0545 FkpA FKBP-type peptidy 99.7 8E-17 1.7E-21 139.0 10.5 100 145-251 99-204 (205)
17 KOG0548|consensus 99.7 3.7E-16 8E-21 152.2 11.3 118 267-399 356-473 (539)
18 PRK15095 FKBP-type peptidyl-pr 99.6 5.9E-16 1.3E-20 132.7 9.6 85 45-137 4-88 (156)
19 KOG4648|consensus 99.6 7.1E-16 1.5E-20 142.1 7.6 120 263-397 91-210 (536)
20 KOG0547|consensus 99.6 3.9E-15 8.4E-20 143.2 11.8 127 259-400 105-232 (606)
21 PRK15359 type III secretion sy 99.6 2.3E-14 4.9E-19 122.6 13.0 113 272-399 27-139 (144)
22 PLN03088 SGT1, suppressor of 99.6 1.6E-14 3.6E-19 142.3 13.7 117 270-401 3-119 (356)
23 COG1047 SlpA FKBP-type peptidy 99.6 2E-14 4.2E-19 122.2 9.6 87 45-139 2-88 (174)
24 KOG0548|consensus 99.5 3.2E-14 6.9E-19 138.9 10.0 113 269-396 2-114 (539)
25 TIGR00990 3a0801s09 mitochondr 99.5 2.8E-13 6.1E-18 144.1 17.2 136 235-387 94-229 (615)
26 KOG0550|consensus 99.5 5.1E-14 1.1E-18 133.1 10.1 127 265-403 245-371 (486)
27 PRK15363 pathogenicity island 99.5 2.8E-13 6.1E-18 114.1 12.8 104 267-385 33-136 (157)
28 KOG0551|consensus 99.5 1.2E-13 2.5E-18 127.3 9.9 112 268-390 80-191 (390)
29 PRK11570 peptidyl-prolyl cis-t 99.5 3E-13 6.4E-18 121.4 11.6 99 146-251 101-205 (206)
30 PF00254 FKBP_C: FKBP-type pep 99.5 3.3E-13 7.1E-18 106.7 10.4 87 160-249 2-94 (94)
31 PRK10737 FKBP-type peptidyl-pr 99.5 3.4E-13 7.5E-18 118.6 11.5 84 45-137 2-85 (196)
32 KOG4626|consensus 99.5 6E-14 1.3E-18 138.3 6.2 137 263-399 246-401 (966)
33 KOG4626|consensus 99.4 1.2E-13 2.5E-18 136.4 7.0 156 251-406 268-442 (966)
34 TIGR03516 ppisom_GldI peptidyl 99.4 8.7E-13 1.9E-17 115.4 11.7 103 146-252 68-176 (177)
35 KOG0552|consensus 99.4 1E-12 2.2E-17 116.9 11.1 100 146-251 119-225 (226)
36 TIGR02552 LcrH_SycD type III s 99.4 2.6E-12 5.7E-17 108.8 12.6 116 268-398 16-131 (135)
37 KOG4642|consensus 99.4 8.4E-13 1.8E-17 116.4 8.1 117 267-398 8-129 (284)
38 PRK10902 FKBP-type peptidyl-pr 99.4 4.7E-12 1E-16 117.9 12.3 100 146-253 145-250 (269)
39 PRK11189 lipoprotein NlpI; Pro 99.4 5.5E-12 1.2E-16 121.6 12.6 128 242-387 40-167 (296)
40 KOG1126|consensus 99.4 2.4E-12 5.2E-17 128.8 10.2 179 199-406 433-611 (638)
41 KOG0545|consensus 99.3 1.7E-11 3.6E-16 108.6 10.6 232 147-400 10-278 (329)
42 KOG0376|consensus 99.3 2.2E-12 4.8E-17 125.2 5.6 119 268-401 3-121 (476)
43 TIGR00990 3a0801s09 mitochondr 99.3 3.8E-11 8.2E-16 127.9 14.8 119 266-399 328-446 (615)
44 PRK10370 formate-dependent nit 99.3 2.8E-11 6E-16 109.2 11.6 115 261-390 65-182 (198)
45 PF13414 TPR_11: TPR repeat; P 99.3 8.4E-12 1.8E-16 92.4 6.8 66 318-383 3-69 (69)
46 KOG0546|consensus 99.3 8.4E-12 1.8E-16 116.5 7.3 153 263-415 216-372 (372)
47 KOG1126|consensus 99.2 1.4E-11 2.9E-16 123.5 7.1 140 267-406 419-577 (638)
48 KOG0547|consensus 99.2 1.1E-10 2.5E-15 112.8 12.6 137 266-418 323-459 (606)
49 PRK10370 formate-dependent nit 99.2 3.5E-10 7.5E-15 102.1 13.9 128 281-424 51-181 (198)
50 KOG1155|consensus 99.2 1.4E-10 2.9E-15 111.6 11.5 119 274-407 335-453 (559)
51 KOG0624|consensus 99.2 1.8E-10 3.9E-15 106.9 11.5 115 267-396 36-153 (504)
52 PRK09782 bacteriophage N4 rece 99.2 1.5E-10 3.3E-15 126.9 12.4 116 269-399 609-724 (987)
53 KOG1155|consensus 99.2 2E-10 4.3E-15 110.5 11.5 149 252-416 347-495 (559)
54 TIGR02795 tol_pal_ybgF tol-pal 99.2 2.8E-10 6.1E-15 93.7 11.1 112 269-392 2-116 (119)
55 PRK15359 type III secretion sy 99.2 2.7E-10 5.8E-15 97.4 11.3 94 321-415 27-120 (144)
56 PRK02603 photosystem I assembl 99.1 8.7E-10 1.9E-14 97.5 13.8 111 263-385 29-153 (172)
57 PRK15331 chaperone protein Sic 99.1 4.7E-10 1E-14 95.1 11.0 106 268-389 36-141 (165)
58 PRK15179 Vi polysaccharide bio 99.1 5.8E-10 1.2E-14 117.9 14.0 140 266-421 83-222 (694)
59 PRK12370 invasion protein regu 99.1 2.4E-10 5.3E-15 119.8 11.0 120 267-401 293-421 (553)
60 COG3063 PilF Tfp pilus assembl 99.1 1.7E-09 3.7E-14 95.7 14.0 144 266-425 32-177 (250)
61 PRK12370 invasion protein regu 99.1 3.1E-10 6.7E-15 119.1 10.7 130 263-407 332-462 (553)
62 KOG0553|consensus 99.1 5.1E-10 1.1E-14 102.9 10.1 97 318-415 81-177 (304)
63 PF13432 TPR_16: Tetratricopep 99.1 3.6E-10 7.8E-15 82.5 7.4 65 322-386 1-65 (65)
64 KOG1125|consensus 99.1 2.3E-10 5E-15 113.1 7.6 116 269-399 430-555 (579)
65 PRK09782 bacteriophage N4 rece 99.1 7.8E-10 1.7E-14 121.4 12.4 104 312-417 604-707 (987)
66 PF12895 Apc3: Anaphase-promot 99.1 5.1E-10 1.1E-14 86.3 7.7 83 282-378 2-84 (84)
67 TIGR02521 type_IV_pilW type IV 99.0 1E-09 2.3E-14 100.9 10.5 122 268-404 64-187 (234)
68 TIGR02552 LcrH_SycD type III s 99.0 3.4E-09 7.4E-14 89.5 12.7 104 312-416 11-114 (135)
69 PF13414 TPR_11: TPR repeat; P 99.0 4E-10 8.7E-15 83.3 6.0 67 268-349 2-69 (69)
70 cd00189 TPR Tetratricopeptide 99.0 1.1E-09 2.4E-14 85.0 8.6 99 271-384 2-100 (100)
71 TIGR02521 type_IV_pilW type IV 99.0 4.9E-09 1.1E-13 96.4 13.5 132 268-415 30-163 (234)
72 TIGR03302 OM_YfiO outer membra 99.0 9.6E-09 2.1E-13 95.7 15.5 115 267-393 31-156 (235)
73 KOG0624|consensus 99.0 1.8E-09 3.9E-14 100.4 10.0 124 267-401 267-390 (504)
74 PRK15363 pathogenicity island 99.0 7.8E-09 1.7E-13 87.4 13.0 104 315-419 32-135 (157)
75 PRK11189 lipoprotein NlpI; Pro 99.0 6E-09 1.3E-13 100.5 13.8 114 282-406 39-152 (296)
76 PRK15174 Vi polysaccharide exp 99.0 1.9E-09 4.1E-14 115.1 11.3 133 268-416 245-381 (656)
77 PLN02789 farnesyltranstransfer 99.0 4.3E-09 9.4E-14 101.7 12.7 123 262-399 64-189 (320)
78 COG3063 PilF Tfp pilus assembl 99.0 1.1E-09 2.3E-14 97.0 7.5 131 258-403 58-190 (250)
79 CHL00033 ycf3 photosystem I as 99.0 9.5E-09 2.1E-13 90.5 13.3 109 266-386 32-154 (168)
80 KOG1125|consensus 99.0 4.4E-09 9.5E-14 104.2 11.5 155 257-411 307-523 (579)
81 COG5010 TadD Flp pilus assembl 99.0 6.2E-09 1.4E-13 94.0 11.1 123 270-407 101-223 (257)
82 PRK15174 Vi polysaccharide exp 98.9 6.7E-09 1.5E-13 110.9 12.9 125 275-415 218-346 (656)
83 KOG1173|consensus 98.9 2.9E-09 6.2E-14 105.1 8.5 124 267-398 412-535 (611)
84 KOG4555|consensus 98.9 4.7E-08 1E-12 78.6 13.7 112 265-393 39-154 (175)
85 PF13429 TPR_15: Tetratricopep 98.9 4.3E-09 9.4E-14 100.8 8.8 133 267-415 144-276 (280)
86 PF13371 TPR_9: Tetratricopept 98.9 8.3E-09 1.8E-13 77.1 8.1 70 325-394 2-71 (73)
87 KOG1308|consensus 98.9 1.2E-09 2.5E-14 101.9 3.8 124 261-400 106-229 (377)
88 PRK15179 Vi polysaccharide bio 98.9 1.1E-08 2.3E-13 108.4 11.3 133 249-396 100-233 (694)
89 KOG0550|consensus 98.9 3.5E-08 7.5E-13 94.1 13.1 146 267-416 201-350 (486)
90 PRK11447 cellulose synthase su 98.8 2.2E-08 4.8E-13 114.1 13.4 147 250-397 284-430 (1157)
91 TIGR00115 tig trigger factor. 98.8 1.8E-08 4E-13 101.6 11.4 99 45-152 146-244 (408)
92 PLN02789 farnesyltranstransfer 98.8 8.7E-08 1.9E-12 92.7 15.3 121 278-414 46-169 (320)
93 PF14559 TPR_19: Tetratricopep 98.8 1E-08 2.2E-13 75.4 6.7 67 328-394 1-67 (68)
94 TIGR02917 PEP_TPR_lipo putativ 98.8 1.5E-08 3.2E-13 112.4 11.1 112 272-399 739-850 (899)
95 COG4785 NlpI Lipoprotein NlpI, 98.8 1.1E-08 2.3E-13 89.5 7.8 130 241-388 40-169 (297)
96 PRK10049 pgaA outer membrane p 98.8 1.7E-08 3.7E-13 110.0 10.8 116 267-398 47-162 (765)
97 PRK10803 tol-pal system protei 98.8 6.1E-08 1.3E-12 91.0 12.9 112 270-393 143-258 (263)
98 TIGR03302 OM_YfiO outer membra 98.8 5.6E-08 1.2E-12 90.5 12.1 127 269-407 70-224 (235)
99 PRK11788 tetratricopeptide rep 98.8 4.7E-08 1E-12 98.2 12.5 120 270-399 142-262 (389)
100 KOG1129|consensus 98.8 2.9E-09 6.4E-14 98.4 3.1 116 272-402 327-445 (478)
101 PRK11447 cellulose synthase su 98.8 6.7E-08 1.4E-12 110.2 14.0 127 274-416 274-414 (1157)
102 KOG1840|consensus 98.8 3.4E-08 7.3E-13 100.0 10.0 147 265-419 237-399 (508)
103 PRK15095 FKBP-type peptidyl-pr 98.8 2.1E-08 4.6E-13 86.1 7.3 66 162-230 4-75 (156)
104 TIGR02917 PEP_TPR_lipo putativ 98.8 9.9E-08 2.1E-12 105.7 14.8 124 266-404 122-245 (899)
105 PF13512 TPR_18: Tetratricopep 98.8 1.1E-07 2.3E-12 79.2 11.1 110 269-390 10-137 (142)
106 PRK11788 tetratricopeptide rep 98.8 1.5E-07 3.2E-12 94.6 14.7 131 269-416 180-311 (389)
107 PLN03088 SGT1, suppressor of 98.7 9.2E-08 2E-12 94.5 12.4 94 321-415 5-98 (356)
108 PRK01490 tig trigger factor; P 98.7 6.1E-08 1.3E-12 98.7 11.4 99 45-152 157-255 (435)
109 KOG2076|consensus 98.7 2.4E-07 5.3E-12 96.3 14.9 117 269-400 139-255 (895)
110 PF06552 TOM20_plant: Plant sp 98.7 8.3E-08 1.8E-12 82.2 9.6 99 285-398 7-126 (186)
111 KOG2003|consensus 98.7 8.8E-08 1.9E-12 92.2 10.6 123 268-405 489-611 (840)
112 PF13432 TPR_16: Tetratricopep 98.7 2.1E-08 4.6E-13 73.0 4.9 64 274-352 2-65 (65)
113 COG4783 Putative Zn-dependent 98.7 2.3E-07 5E-12 90.7 13.2 132 268-414 305-436 (484)
114 PRK10866 outer membrane biogen 98.7 7.3E-07 1.6E-11 83.1 16.1 122 269-402 32-177 (243)
115 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 3.8E-08 8.3E-13 96.5 7.6 70 312-381 69-141 (453)
116 KOG2002|consensus 98.7 1.5E-07 3.2E-12 98.5 12.3 125 263-399 264-389 (1018)
117 cd00189 TPR Tetratricopeptide 98.7 3E-07 6.5E-12 71.0 11.1 85 320-404 2-86 (100)
118 TIGR02795 tol_pal_ybgF tol-pal 98.7 4.6E-07 9.9E-12 74.3 12.7 98 319-417 3-106 (119)
119 PF13424 TPR_12: Tetratricopep 98.7 5.7E-08 1.2E-12 73.6 6.1 67 315-381 2-75 (78)
120 PF13525 YfiO: Outer membrane 98.7 6.3E-07 1.4E-11 81.4 14.1 123 268-402 4-143 (203)
121 CHL00033 ycf3 photosystem I as 98.6 5.2E-07 1.1E-11 79.4 12.9 112 276-400 6-120 (168)
122 KOG1128|consensus 98.6 1.2E-07 2.5E-12 96.5 9.6 131 268-414 484-614 (777)
123 KOG4162|consensus 98.6 1.2E-07 2.5E-12 97.0 9.4 103 269-386 684-788 (799)
124 COG5010 TadD Flp pilus assembl 98.6 3.1E-07 6.7E-12 83.2 11.1 121 273-408 70-190 (257)
125 PRK10049 pgaA outer membrane p 98.6 5.4E-07 1.2E-11 98.3 15.1 102 318-420 359-460 (765)
126 PRK02603 photosystem I assembl 98.6 4.6E-07 1E-11 80.0 11.5 88 314-401 31-121 (172)
127 COG1729 Uncharacterized protei 98.6 4.1E-07 8.9E-12 83.4 11.0 111 269-391 141-254 (262)
128 COG4235 Cytochrome c biogenesi 98.6 4.3E-07 9.4E-12 84.3 11.2 118 263-395 150-270 (287)
129 COG0544 Tig FKBP-type peptidyl 98.6 2.5E-07 5.3E-12 92.7 10.2 89 46-142 158-246 (441)
130 KOG1310|consensus 98.6 3.7E-07 7.9E-12 89.6 10.8 115 263-392 368-485 (758)
131 KOG4234|consensus 98.5 2.1E-06 4.5E-11 74.5 13.3 140 320-464 97-251 (271)
132 PF13424 TPR_12: Tetratricopep 98.5 3.9E-07 8.4E-12 68.9 7.3 73 267-347 3-75 (78)
133 PF14559 TPR_19: Tetratricopep 98.5 1.9E-07 4.1E-12 68.6 5.3 67 279-360 1-67 (68)
134 KOG1840|consensus 98.5 1.2E-06 2.6E-11 88.9 12.6 145 266-418 196-356 (508)
135 COG2956 Predicted N-acetylgluc 98.5 1.4E-06 3E-11 80.9 11.6 92 315-406 177-269 (389)
136 PF13371 TPR_9: Tetratricopept 98.5 5.3E-07 1.1E-11 67.2 6.8 69 276-359 2-70 (73)
137 PRK14574 hmsH outer membrane p 98.5 1.6E-06 3.5E-11 93.7 13.1 151 268-420 33-202 (822)
138 PF09976 TPR_21: Tetratricopep 98.5 1.8E-06 3.8E-11 74.0 10.9 98 269-379 48-145 (145)
139 PF12688 TPR_5: Tetratrico pep 98.4 3.4E-06 7.5E-11 69.0 11.7 99 270-380 2-103 (120)
140 COG1047 SlpA FKBP-type peptidy 98.4 7.5E-07 1.6E-11 76.2 7.6 65 163-230 3-73 (174)
141 PRK14720 transcript cleavage f 98.4 2.5E-06 5.5E-11 91.5 12.9 131 268-417 30-179 (906)
142 PF13429 TPR_15: Tetratricopep 98.4 1.3E-06 2.8E-11 83.6 9.0 131 271-415 112-242 (280)
143 PRK10737 FKBP-type peptidyl-pr 98.3 1.2E-06 2.7E-11 77.4 7.3 65 163-230 3-72 (196)
144 KOG1130|consensus 98.3 9E-07 2E-11 84.5 6.7 113 263-384 189-307 (639)
145 PF12895 Apc3: Anaphase-promot 98.3 1E-06 2.2E-11 67.7 5.8 76 331-407 2-79 (84)
146 PRK14574 hmsH outer membrane p 98.3 2.2E-06 4.8E-11 92.8 10.3 122 269-406 102-223 (822)
147 KOG2002|consensus 98.3 3.4E-06 7.3E-11 88.6 11.1 136 265-416 303-442 (1018)
148 PRK10803 tol-pal system protei 98.3 1.2E-05 2.6E-10 75.5 13.3 105 318-423 142-253 (263)
149 KOG2076|consensus 98.3 9.5E-06 2.1E-10 84.7 13.3 103 266-383 170-272 (895)
150 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 4.4E-06 9.5E-11 82.2 10.3 71 263-348 69-142 (453)
151 COG4783 Putative Zn-dependent 98.3 5.8E-06 1.3E-10 81.1 10.8 113 272-399 343-455 (484)
152 KOG4648|consensus 98.3 1.7E-06 3.7E-11 80.9 6.6 93 321-414 100-192 (536)
153 COG4235 Cytochrome c biogenesi 98.2 3.1E-05 6.7E-10 72.1 14.1 117 312-429 150-269 (287)
154 KOG4162|consensus 98.2 1.1E-05 2.5E-10 82.8 11.7 118 272-404 653-772 (799)
155 TIGR00540 hemY_coli hemY prote 98.2 1.1E-05 2.5E-10 81.5 11.8 144 257-417 251-400 (409)
156 PF12688 TPR_5: Tetratrico pep 98.2 2.4E-05 5.2E-10 64.0 11.4 91 319-409 2-98 (120)
157 PF00515 TPR_1: Tetratricopept 98.2 2.3E-06 5E-11 53.2 4.1 33 353-385 2-34 (34)
158 KOG3060|consensus 98.2 6.1E-05 1.3E-09 68.1 14.2 131 271-401 88-240 (289)
159 PF14938 SNAP: Soluble NSF att 98.2 1.5E-05 3.2E-10 76.4 11.0 112 266-386 111-230 (282)
160 KOG1128|consensus 98.2 8.3E-06 1.8E-10 83.4 9.2 94 314-407 481-574 (777)
161 PF09976 TPR_21: Tetratricopep 98.1 7.9E-05 1.7E-09 63.7 14.0 132 267-412 9-143 (145)
162 PF13431 TPR_17: Tetratricopep 98.1 2E-06 4.2E-11 53.4 2.9 34 340-373 1-34 (34)
163 KOG1174|consensus 98.1 3E-05 6.5E-10 74.4 12.2 128 262-405 327-490 (564)
164 TIGR00540 hemY_coli hemY prote 98.1 5.2E-05 1.1E-09 76.7 14.9 124 265-403 80-204 (409)
165 COG4700 Uncharacterized protei 98.1 6.6E-05 1.4E-09 64.6 12.8 140 269-424 89-230 (251)
166 cd05804 StaR_like StaR_like; a 98.1 1.2E-05 2.6E-10 79.7 9.9 100 269-383 114-217 (355)
167 KOG1173|consensus 98.1 1.2E-05 2.6E-10 80.0 9.3 134 265-414 308-441 (611)
168 PRK10747 putative protoheme IX 98.1 8.4E-05 1.8E-09 74.9 15.8 124 265-404 80-205 (398)
169 KOG1156|consensus 98.1 1.5E-05 3.3E-10 80.4 10.0 118 271-403 9-126 (700)
170 PF03704 BTAD: Bacterial trans 98.1 0.00011 2.4E-09 62.8 14.1 110 271-380 8-124 (146)
171 PRK15331 chaperone protein Sic 98.1 6.8E-05 1.5E-09 64.0 12.2 94 313-406 32-125 (165)
172 KOG3060|consensus 98.1 3.8E-05 8.3E-10 69.3 11.2 85 267-366 152-239 (289)
173 PRK10153 DNA-binding transcrip 98.1 7.1E-06 1.5E-10 84.6 7.6 71 316-387 418-488 (517)
174 PRK10153 DNA-binding transcrip 98.1 5.7E-05 1.2E-09 78.0 13.3 130 269-415 339-481 (517)
175 PRK11906 transcriptional regul 98.1 3.9E-05 8.4E-10 75.8 11.4 119 273-403 259-389 (458)
176 PF13428 TPR_14: Tetratricopep 98.0 1E-05 2.2E-10 53.6 5.2 41 353-393 2-42 (44)
177 PF07719 TPR_2: Tetratricopept 98.0 1.1E-05 2.3E-10 50.1 4.7 34 352-385 1-34 (34)
178 PF00515 TPR_1: Tetratricopept 98.0 7.8E-06 1.7E-10 50.8 4.1 34 318-351 1-34 (34)
179 KOG4642|consensus 98.0 1.2E-05 2.6E-10 71.8 6.6 85 323-407 15-99 (284)
180 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 2.1E-05 4.5E-10 77.8 9.1 107 282-406 182-288 (395)
181 cd05804 StaR_like StaR_like; a 98.0 4.1E-05 8.8E-10 75.9 11.3 143 270-413 44-212 (355)
182 COG1729 Uncharacterized protei 98.0 0.00012 2.5E-09 67.5 12.8 107 321-428 144-256 (262)
183 PF13428 TPR_14: Tetratricopep 98.0 1.8E-05 3.8E-10 52.4 5.0 43 319-361 2-44 (44)
184 KOG1129|consensus 98.0 2.2E-05 4.7E-10 73.3 7.1 86 313-398 285-370 (478)
185 PRK10747 putative protoheme IX 98.0 8.4E-05 1.8E-09 74.9 12.2 133 262-414 256-388 (398)
186 PRK14720 transcript cleavage f 97.9 5.8E-05 1.3E-09 81.3 11.2 112 270-397 117-268 (906)
187 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 6.4E-05 1.4E-09 51.5 7.2 47 353-399 2-48 (53)
188 PF13525 YfiO: Outer membrane 97.9 0.00057 1.2E-08 62.0 15.4 110 317-426 4-129 (203)
189 KOG1174|consensus 97.9 0.00011 2.4E-09 70.6 10.8 138 268-405 231-387 (564)
190 KOG1127|consensus 97.9 5.2E-05 1.1E-09 80.1 9.0 138 268-405 491-649 (1238)
191 COG2956 Predicted N-acetylgluc 97.9 0.00027 6E-09 66.1 12.7 107 265-386 176-283 (389)
192 KOG2003|consensus 97.9 0.00027 5.8E-09 68.7 13.0 153 250-418 505-691 (840)
193 COG4105 ComL DNA uptake lipopr 97.9 0.00073 1.6E-08 61.8 15.2 120 268-399 33-166 (254)
194 PF12569 NARP1: NMDA receptor- 97.8 0.00013 2.9E-09 75.0 11.5 89 317-405 193-281 (517)
195 PF13512 TPR_18: Tetratricopep 97.8 0.0002 4.4E-09 59.8 10.4 71 318-388 10-83 (142)
196 KOG4555|consensus 97.8 0.00023 5E-09 57.7 10.3 78 323-400 48-129 (175)
197 PRK10866 outer membrane biogen 97.8 0.00058 1.3E-08 63.7 14.6 79 318-396 32-116 (243)
198 PF04733 Coatomer_E: Coatomer 97.8 8.6E-05 1.9E-09 71.0 9.2 111 277-402 139-251 (290)
199 PF12968 DUF3856: Domain of Un 97.8 0.00072 1.6E-08 53.8 12.3 103 275-380 15-128 (144)
200 PRK11906 transcriptional regul 97.8 9E-05 2E-09 73.3 9.0 91 282-387 317-407 (458)
201 PF07719 TPR_2: Tetratricopept 97.8 5.1E-05 1.1E-09 46.9 4.7 34 318-351 1-34 (34)
202 PF15015 NYD-SP12_N: Spermatog 97.8 0.00016 3.6E-09 69.6 10.2 111 270-380 177-290 (569)
203 KOG0551|consensus 97.8 0.00027 5.8E-09 66.3 11.2 85 317-401 80-168 (390)
204 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00037 8.1E-09 69.1 12.8 68 314-381 230-297 (395)
205 KOG4151|consensus 97.7 9.3E-05 2E-09 76.8 8.2 121 261-392 45-167 (748)
206 KOG1156|consensus 97.7 0.00025 5.5E-09 71.9 9.9 124 266-404 38-161 (700)
207 KOG1586|consensus 97.6 0.0012 2.5E-08 59.2 12.6 121 270-399 114-244 (288)
208 PRK10941 hypothetical protein; 97.6 0.00069 1.5E-08 63.7 11.8 76 315-390 178-253 (269)
209 KOG1130|consensus 97.6 0.00025 5.3E-09 68.3 8.4 125 248-381 208-344 (639)
210 PF14938 SNAP: Soluble NSF att 97.6 0.00025 5.3E-09 67.9 8.4 141 264-415 30-183 (282)
211 PF06552 TOM20_plant: Plant sp 97.6 0.00042 9E-09 59.8 8.5 69 334-402 7-85 (186)
212 PF13181 TPR_8: Tetratricopept 97.5 0.00012 2.7E-09 45.2 3.9 32 353-384 2-33 (34)
213 KOG4814|consensus 97.5 0.0033 7.2E-08 63.9 15.4 103 270-381 355-457 (872)
214 KOG0376|consensus 97.5 0.00011 2.3E-09 72.4 4.8 87 321-407 7-93 (476)
215 KOG1127|consensus 97.5 0.00048 1E-08 73.1 9.1 114 271-399 564-677 (1238)
216 PF04733 Coatomer_E: Coatomer 97.5 0.00041 9E-09 66.4 8.0 92 283-389 181-273 (290)
217 KOG0495|consensus 97.4 0.0015 3.3E-08 66.5 11.8 127 274-400 589-733 (913)
218 KOG0495|consensus 97.4 0.0017 3.6E-08 66.2 11.9 130 274-419 656-785 (913)
219 KOG3785|consensus 97.3 0.0012 2.6E-08 62.5 9.4 67 324-390 157-223 (557)
220 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.001 2.2E-08 45.6 6.1 40 319-358 2-41 (53)
221 COG4785 NlpI Lipoprotein NlpI, 97.3 0.00083 1.8E-08 59.5 6.9 77 316-392 63-139 (297)
222 KOG3364|consensus 97.3 0.0024 5.1E-08 52.2 9.0 83 317-399 31-118 (149)
223 KOG3824|consensus 97.3 0.0023 5.1E-08 59.5 10.1 78 320-397 118-195 (472)
224 PF13181 TPR_8: Tetratricopept 97.3 0.00046 9.9E-09 42.6 3.9 33 319-351 2-34 (34)
225 KOG4507|consensus 97.2 0.0011 2.4E-08 66.6 8.3 110 274-397 612-721 (886)
226 TIGR00115 tig trigger factor. 97.2 0.0015 3.2E-08 66.1 9.3 83 162-253 146-231 (408)
227 PF13431 TPR_17: Tetratricopep 97.1 0.00022 4.8E-09 44.1 1.5 28 312-339 7-34 (34)
228 KOG2796|consensus 97.1 0.0077 1.7E-07 55.0 11.7 81 317-397 251-334 (366)
229 PRK01490 tig trigger factor; P 97.0 0.0027 5.8E-08 64.8 9.3 83 162-253 157-242 (435)
230 KOG3785|consensus 97.0 0.0034 7.3E-08 59.6 9.0 86 279-378 32-117 (557)
231 PF12569 NARP1: NMDA receptor- 97.0 0.0054 1.2E-07 63.3 11.0 79 318-396 4-82 (517)
232 COG4105 ComL DNA uptake lipopr 97.0 0.0043 9.4E-08 56.8 9.1 72 317-388 33-107 (254)
233 PF13174 TPR_6: Tetratricopept 97.0 0.0011 2.4E-08 40.4 3.7 32 354-385 2-33 (33)
234 COG3071 HemY Uncharacterized e 97.0 0.024 5.3E-07 54.8 14.3 129 263-406 78-207 (400)
235 PF09986 DUF2225: Uncharacteri 97.0 0.023 4.9E-07 51.7 13.6 101 276-384 84-197 (214)
236 KOG1308|consensus 97.0 0.00036 7.8E-09 65.8 1.7 76 327-402 123-198 (377)
237 KOG4340|consensus 96.9 0.0066 1.4E-07 56.4 9.3 85 280-379 21-105 (459)
238 KOG2376|consensus 96.8 0.013 2.8E-07 59.3 11.5 115 271-388 14-146 (652)
239 KOG2396|consensus 96.8 0.03 6.5E-07 55.8 13.6 110 285-409 87-197 (568)
240 KOG4340|consensus 96.8 0.013 2.7E-07 54.6 10.2 133 268-416 43-207 (459)
241 smart00028 TPR Tetratricopepti 96.7 0.0024 5.2E-08 37.9 3.7 31 354-384 3-33 (34)
242 COG2976 Uncharacterized protei 96.7 0.016 3.6E-07 50.7 9.9 104 269-385 89-192 (207)
243 COG0457 NrfG FOG: TPR repeat [ 96.7 0.037 8E-07 49.4 13.1 95 278-384 139-234 (291)
244 KOG2376|consensus 96.7 0.013 2.8E-07 59.3 10.3 112 274-407 84-196 (652)
245 PF14561 TPR_20: Tetratricopep 96.7 0.02 4.4E-07 44.2 9.2 70 337-406 7-78 (90)
246 PF13176 TPR_7: Tetratricopept 96.6 0.0032 6.8E-08 39.5 3.8 25 355-379 2-26 (36)
247 COG0457 NrfG FOG: TPR repeat [ 96.6 0.039 8.5E-07 49.2 12.5 118 268-400 94-216 (291)
248 KOG3081|consensus 96.6 0.041 8.8E-07 50.6 11.8 85 320-404 171-259 (299)
249 PF13176 TPR_7: Tetratricopept 96.6 0.0038 8.1E-08 39.1 3.8 28 320-347 1-28 (36)
250 KOG2471|consensus 96.5 0.0066 1.4E-07 60.0 7.0 123 271-399 242-382 (696)
251 PF10300 DUF3808: Protein of u 96.5 0.014 3E-07 60.0 9.8 104 267-382 265-377 (468)
252 COG3118 Thioredoxin domain-con 96.5 0.042 9.2E-07 51.4 11.8 114 272-400 137-286 (304)
253 PF13174 TPR_6: Tetratricopept 96.5 0.0049 1.1E-07 37.4 3.9 32 320-351 2-33 (33)
254 COG4976 Predicted methyltransf 96.5 0.0043 9.4E-08 55.5 4.8 61 327-387 4-64 (287)
255 KOG1941|consensus 96.4 0.018 3.8E-07 55.1 8.8 136 269-404 6-180 (518)
256 smart00028 TPR Tetratricopepti 96.4 0.0049 1.1E-07 36.5 3.6 33 319-351 2-34 (34)
257 COG2912 Uncharacterized conser 96.4 0.038 8.3E-07 51.3 10.7 75 315-389 178-252 (269)
258 KOG2053|consensus 96.3 0.07 1.5E-06 56.8 13.1 113 279-407 19-131 (932)
259 PF03704 BTAD: Bacterial trans 96.2 0.25 5.4E-06 41.9 14.2 85 323-407 11-117 (146)
260 PLN03081 pentatricopeptide (PP 96.2 0.032 6.9E-07 60.7 10.7 62 319-380 495-556 (697)
261 KOG1941|consensus 96.2 0.034 7.4E-07 53.2 9.2 102 271-381 124-235 (518)
262 PF08631 SPO22: Meiosis protei 96.1 0.19 4.1E-06 47.9 14.7 123 259-383 25-152 (278)
263 COG0544 Tig FKBP-type peptidyl 96.1 0.017 3.7E-07 58.3 7.6 80 163-253 158-242 (441)
264 PF04184 ST7: ST7 protein; In 96.1 0.063 1.4E-06 53.7 11.1 107 284-390 215-334 (539)
265 COG3071 HemY Uncharacterized e 96.1 0.065 1.4E-06 52.0 10.9 119 269-406 263-381 (400)
266 PF05843 Suf: Suppressor of fo 96.1 0.057 1.2E-06 51.6 10.7 110 276-400 8-121 (280)
267 PRK04841 transcriptional regul 95.9 0.1 2.2E-06 58.7 13.3 65 318-382 531-603 (903)
268 KOG1915|consensus 95.8 0.17 3.6E-06 50.4 12.5 90 280-380 377-499 (677)
269 COG4700 Uncharacterized protei 95.7 0.16 3.6E-06 44.2 10.7 86 318-403 89-177 (251)
270 KOG1585|consensus 95.7 0.1 2.3E-06 47.4 9.8 100 274-382 115-220 (308)
271 KOG2796|consensus 95.7 0.18 3.9E-06 46.4 11.3 122 272-407 180-307 (366)
272 KOG1585|consensus 95.6 0.46 1E-05 43.3 13.6 129 269-406 31-170 (308)
273 PF04781 DUF627: Protein of un 95.6 0.046 1E-06 43.4 6.4 96 275-382 2-108 (111)
274 KOG1915|consensus 95.5 0.31 6.8E-06 48.5 13.1 100 272-386 76-175 (677)
275 PF10602 RPN7: 26S proteasome 95.5 0.2 4.4E-06 44.1 11.1 103 267-381 34-142 (177)
276 PRK04841 transcriptional regul 95.5 0.1 2.3E-06 58.5 11.4 100 272-381 455-560 (903)
277 KOG1586|consensus 95.3 0.17 3.7E-06 45.7 9.8 110 269-388 74-190 (288)
278 COG2976 Uncharacterized protei 95.3 0.65 1.4E-05 41.0 13.1 140 275-417 37-189 (207)
279 PLN03218 maturation of RBCL 1; 95.3 0.32 6.9E-06 55.0 14.2 26 271-296 544-569 (1060)
280 PLN03218 maturation of RBCL 1; 95.1 0.61 1.3E-05 52.8 15.7 114 268-381 506-643 (1060)
281 KOG2610|consensus 95.1 0.31 6.6E-06 46.4 11.1 111 271-396 105-219 (491)
282 PLN03081 pentatricopeptide (PP 95.0 0.26 5.7E-06 53.6 12.5 145 269-416 391-557 (697)
283 COG3947 Response regulator con 95.0 0.28 6E-06 45.9 10.4 75 304-378 265-339 (361)
284 PF10952 DUF2753: Protein of u 95.0 0.13 2.9E-06 41.3 7.2 115 271-392 3-122 (140)
285 KOG3824|consensus 94.9 0.044 9.6E-07 51.3 5.2 80 268-362 115-194 (472)
286 PF13374 TPR_10: Tetratricopep 94.9 0.054 1.2E-06 34.6 4.3 29 319-347 3-31 (42)
287 KOG3081|consensus 94.8 0.43 9.3E-06 44.1 11.0 103 268-388 175-278 (299)
288 KOG2471|consensus 94.6 0.068 1.5E-06 53.1 5.8 96 269-364 283-381 (696)
289 PF04184 ST7: ST7 protein; In 94.4 0.39 8.4E-06 48.3 10.7 115 278-407 177-316 (539)
290 PF10300 DUF3808: Protein of u 94.4 0.43 9.4E-06 49.1 11.5 110 312-421 261-377 (468)
291 PLN03077 Protein ECB2; Provisi 94.3 0.67 1.4E-05 51.8 13.9 136 269-406 554-711 (857)
292 PLN03077 Protein ECB2; Provisi 94.3 0.43 9.4E-06 53.3 12.3 63 318-380 657-719 (857)
293 KOG1070|consensus 94.1 0.73 1.6E-05 51.8 12.7 117 268-384 1457-1596(1710)
294 PRK10941 hypothetical protein; 93.9 0.34 7.4E-06 45.7 8.9 79 268-361 180-258 (269)
295 PF13374 TPR_10: Tetratricopep 93.9 0.12 2.6E-06 33.0 4.2 30 352-381 2-31 (42)
296 COG5191 Uncharacterized conser 93.9 0.11 2.3E-06 48.9 5.2 81 316-396 105-186 (435)
297 KOG1070|consensus 93.8 0.61 1.3E-05 52.3 11.6 83 316-398 1562-1646(1710)
298 COG4976 Predicted methyltransf 93.8 0.097 2.1E-06 47.1 4.6 60 278-352 4-63 (287)
299 COG3629 DnrI DNA-binding trans 93.8 0.54 1.2E-05 44.3 9.8 73 309-381 144-216 (280)
300 PF10579 Rapsyn_N: Rapsyn N-te 93.7 0.42 9.2E-06 35.4 7.1 67 268-346 5-71 (80)
301 PF02259 FAT: FAT domain; Int 93.5 0.82 1.8E-05 44.9 11.5 114 271-384 186-341 (352)
302 PF05843 Suf: Suppressor of fo 93.5 1.2 2.5E-05 42.6 12.0 102 274-390 40-145 (280)
303 PF09613 HrpB1_HrpK: Bacterial 93.5 1 2.2E-05 38.6 10.2 85 317-401 9-93 (160)
304 PF12862 Apc5: Anaphase-promot 93.4 0.4 8.6E-06 37.4 7.2 63 279-347 8-70 (94)
305 KOG1310|consensus 93.4 0.31 6.7E-06 49.1 7.8 79 328-406 384-465 (758)
306 PF02259 FAT: FAT domain; Int 93.4 0.87 1.9E-05 44.7 11.4 126 267-403 144-309 (352)
307 KOG4507|consensus 93.3 0.31 6.8E-06 49.6 7.7 121 280-413 224-347 (886)
308 PRK13184 pknD serine/threonine 93.2 0.75 1.6E-05 50.9 11.3 138 274-424 480-625 (932)
309 PF10516 SHNi-TPR: SHNi-TPR; 93.2 0.14 3.1E-06 32.3 3.5 29 353-381 2-30 (38)
310 KOG4814|consensus 93.1 0.82 1.8E-05 47.2 10.3 78 318-395 354-437 (872)
311 PF08631 SPO22: Meiosis protei 93.0 4.8 0.0001 38.3 15.4 104 279-389 3-124 (278)
312 KOG2610|consensus 92.9 0.27 5.9E-06 46.8 6.4 96 268-374 136-231 (491)
313 PF06957 COPI_C: Coatomer (COP 92.7 1.4 3.1E-05 44.0 11.4 123 266-388 201-336 (422)
314 PF09613 HrpB1_HrpK: Bacterial 92.7 4.2 9.1E-05 34.9 12.7 111 269-396 10-120 (160)
315 KOG3364|consensus 92.4 0.17 3.7E-06 41.7 3.8 40 317-356 70-109 (149)
316 KOG2053|consensus 92.4 0.65 1.4E-05 49.7 8.9 110 274-399 48-158 (932)
317 PF12862 Apc5: Anaphase-promot 92.3 0.76 1.7E-05 35.7 7.4 57 328-384 8-73 (94)
318 PF04910 Tcf25: Transcriptiona 92.2 1.5 3.2E-05 43.5 10.9 102 282-386 7-138 (360)
319 PF07720 TPR_3: Tetratricopept 92.1 0.44 9.6E-06 29.7 4.6 33 353-385 2-36 (36)
320 PF08424 NRDE-2: NRDE-2, neces 91.5 5.2 0.00011 38.9 13.8 109 312-420 13-135 (321)
321 PF12968 DUF3856: Domain of Un 91.3 1.2 2.5E-05 36.0 7.2 75 269-347 55-129 (144)
322 KOG1550|consensus 91.0 1.8 3.9E-05 45.7 10.7 104 272-396 291-406 (552)
323 PF14561 TPR_20: Tetratricopep 90.8 2 4.3E-05 33.1 8.1 40 312-351 16-55 (90)
324 COG3118 Thioredoxin domain-con 90.5 5.1 0.00011 37.9 11.8 55 322-376 138-192 (304)
325 KOG2300|consensus 90.4 7.2 0.00016 39.3 13.3 101 267-382 365-475 (629)
326 PF07079 DUF1347: Protein of u 90.4 5 0.00011 40.2 12.0 73 323-399 467-543 (549)
327 KOG0686|consensus 90.3 1.4 3E-05 43.2 8.1 98 270-379 151-256 (466)
328 COG3898 Uncharacterized membra 90.0 5.1 0.00011 39.3 11.6 97 280-384 199-295 (531)
329 COG3914 Spy Predicted O-linked 89.7 3 6.5E-05 43.0 10.3 103 278-395 76-185 (620)
330 PF07721 TPR_4: Tetratricopept 89.6 0.48 1E-05 27.0 2.9 23 354-376 3-25 (26)
331 KOG0530|consensus 89.1 7.8 0.00017 36.0 11.5 107 280-401 54-162 (318)
332 PF10516 SHNi-TPR: SHNi-TPR; 89.0 0.63 1.4E-05 29.4 3.3 30 319-348 2-31 (38)
333 PF10255 Paf67: RNA polymerase 88.9 1.4 3E-05 44.0 7.3 136 275-417 128-267 (404)
334 COG0790 FOG: TPR repeat, SEL1 88.8 7.2 0.00016 37.2 12.3 107 269-393 109-230 (292)
335 PF04781 DUF627: Protein of un 88.8 5.9 0.00013 31.7 9.3 72 324-395 2-87 (111)
336 PF07720 TPR_3: Tetratricopept 88.3 1.5 3.3E-05 27.2 4.7 32 320-351 3-36 (36)
337 PF10373 EST1_DNA_bind: Est1 D 88.3 1.9 4E-05 40.9 7.7 62 337-398 1-62 (278)
338 KOG1550|consensus 88.2 4 8.7E-05 43.0 10.7 116 269-398 244-372 (552)
339 PF10255 Paf67: RNA polymerase 88.0 0.84 1.8E-05 45.5 5.1 60 322-381 126-193 (404)
340 TIGR02561 HrpB1_HrpK type III 87.9 6.4 0.00014 33.3 9.5 84 318-401 10-93 (153)
341 TIGR03504 FimV_Cterm FimV C-te 87.8 1.9 4.2E-05 28.2 5.1 25 356-380 3-27 (44)
342 KOG2300|consensus 87.7 7.2 0.00016 39.4 11.1 99 269-375 46-150 (629)
343 KOG2047|consensus 87.2 4.2 9E-05 42.4 9.5 128 244-381 486-615 (835)
344 PF13281 DUF4071: Domain of un 86.4 4.3 9.3E-05 40.1 8.9 69 317-385 178-259 (374)
345 cd02682 MIT_AAA_Arch MIT: doma 86.1 3.4 7.3E-05 30.5 6.1 34 267-300 4-37 (75)
346 PF07721 TPR_4: Tetratricopept 86.0 0.96 2.1E-05 25.7 2.6 24 319-342 2-25 (26)
347 PF10579 Rapsyn_N: Rapsyn N-te 85.0 7.8 0.00017 28.9 7.5 62 320-381 8-72 (80)
348 COG3914 Spy Predicted O-linked 84.7 7.3 0.00016 40.3 9.7 74 324-397 73-147 (620)
349 PF15015 NYD-SP12_N: Spermatog 84.6 8.8 0.00019 38.0 9.9 52 357-408 233-284 (569)
350 KOG0529|consensus 84.5 11 0.00025 37.2 10.7 101 284-399 90-196 (421)
351 KOG0530|consensus 84.3 10 0.00022 35.3 9.5 86 330-415 55-141 (318)
352 PF14863 Alkyl_sulf_dimr: Alky 83.6 5.9 0.00013 33.4 7.4 47 354-400 72-118 (141)
353 PF10602 RPN7: 26S proteasome 83.6 30 0.00065 30.4 12.3 68 315-382 33-103 (177)
354 KOG3617|consensus 83.6 12 0.00026 40.4 10.9 63 318-380 858-940 (1416)
355 COG4455 ImpE Protein of avirul 83.6 9.2 0.0002 34.6 8.8 62 327-388 10-71 (273)
356 PF10345 Cohesin_load: Cohesin 83.5 27 0.00058 37.4 14.2 117 269-385 301-445 (608)
357 KOG2047|consensus 83.3 24 0.00053 37.1 12.7 152 267-418 423-581 (835)
358 PF13281 DUF4071: Domain of un 83.2 32 0.0007 34.1 13.3 102 316-417 139-256 (374)
359 PF10345 Cohesin_load: Cohesin 83.0 27 0.00058 37.4 14.0 112 268-389 58-178 (608)
360 KOG2422|consensus 82.9 15 0.00034 37.9 11.1 114 274-390 240-381 (665)
361 KOG1839|consensus 82.7 4.9 0.00011 45.3 8.3 106 268-381 931-1044(1236)
362 COG0790 FOG: TPR repeat, SEL1 82.7 16 0.00034 34.8 11.2 98 281-397 89-198 (292)
363 KOG3617|consensus 82.6 5.8 0.00013 42.6 8.2 112 269-381 858-996 (1416)
364 COG2912 Uncharacterized conser 82.3 3.7 7.9E-05 38.4 6.1 78 269-361 181-258 (269)
365 PF09986 DUF2225: Uncharacteri 82.1 11 0.00024 34.3 9.2 88 267-360 116-208 (214)
366 KOG0292|consensus 81.8 9.2 0.0002 41.4 9.4 124 266-389 988-1121(1202)
367 PF14863 Alkyl_sulf_dimr: Alky 81.8 4 8.6E-05 34.4 5.7 51 318-368 70-120 (141)
368 cd02679 MIT_spastin MIT: domai 81.5 9.5 0.00021 28.5 7.0 65 267-331 6-76 (79)
369 KOG1839|consensus 81.3 22 0.00048 40.4 12.6 109 267-382 971-1087(1236)
370 PF04910 Tcf25: Transcriptiona 81.1 35 0.00077 33.8 13.1 115 266-380 37-167 (360)
371 PF11817 Foie-gras_1: Foie gra 80.9 4.6 0.0001 37.7 6.5 63 274-345 183-245 (247)
372 COG3898 Uncharacterized membra 80.1 34 0.00074 33.8 11.9 91 275-380 126-216 (531)
373 PHA02537 M terminase endonucle 80.0 26 0.00057 32.1 10.8 118 279-400 93-225 (230)
374 cd02683 MIT_1 MIT: domain cont 79.7 5.9 0.00013 29.5 5.4 33 268-300 5-37 (77)
375 cd02681 MIT_calpain7_1 MIT: do 79.5 8.3 0.00018 28.6 6.1 33 268-300 5-37 (76)
376 KOG0985|consensus 79.4 13 0.00027 41.2 9.5 109 272-403 1197-1330(1666)
377 PF04212 MIT: MIT (microtubule 79.2 5.6 0.00012 28.7 5.2 34 267-300 3-36 (69)
378 PF08424 NRDE-2: NRDE-2, neces 79.0 16 0.00034 35.6 9.8 78 339-417 6-95 (321)
379 TIGR02561 HrpB1_HrpK type III 78.5 13 0.00028 31.5 7.6 77 278-369 19-95 (153)
380 KOG4459|consensus 77.7 8.9 0.00019 38.3 7.4 137 271-417 33-202 (471)
381 PF11817 Foie-gras_1: Foie gra 77.5 14 0.0003 34.4 8.6 85 286-379 155-245 (247)
382 PF10373 EST1_DNA_bind: Est1 D 77.4 5.9 0.00013 37.4 6.2 62 288-364 1-62 (278)
383 TIGR03504 FimV_Cterm FimV C-te 76.7 4.1 9E-05 26.6 3.4 26 322-347 3-28 (44)
384 COG2909 MalT ATP-dependent tra 76.4 1.1E+02 0.0023 33.7 15.3 105 272-382 418-527 (894)
385 cd02684 MIT_2 MIT: domain cont 75.1 10 0.00022 28.1 5.5 34 267-300 4-37 (75)
386 KOG2581|consensus 75.0 12 0.00025 37.0 7.3 68 320-387 211-282 (493)
387 cd02682 MIT_AAA_Arch MIT: doma 74.9 31 0.00068 25.5 9.4 21 370-390 31-51 (75)
388 COG3947 Response regulator con 74.6 14 0.0003 35.0 7.4 51 353-403 280-330 (361)
389 KOG0889|consensus 74.2 32 0.0007 43.3 11.9 86 314-400 2808-2901(3550)
390 KOG1463|consensus 73.5 55 0.0012 31.8 11.1 117 271-399 211-331 (411)
391 cd02678 MIT_VPS4 MIT: domain c 73.3 14 0.00031 27.2 6.0 35 266-300 3-37 (75)
392 cd02656 MIT MIT: domain contai 72.9 14 0.0003 27.1 5.9 35 267-301 4-38 (75)
393 cd02677 MIT_SNX15 MIT: domain 72.1 15 0.00033 27.1 5.8 35 267-301 4-38 (75)
394 TIGR02710 CRISPR-associated pr 71.8 42 0.00091 33.4 10.5 62 271-342 132-195 (380)
395 smart00386 HAT HAT (Half-A-TPR 70.6 13 0.00027 21.5 4.4 27 367-393 2-28 (33)
396 smart00745 MIT Microtubule Int 70.5 26 0.00056 25.8 7.0 35 267-301 6-40 (77)
397 PF11207 DUF2989: Protein of u 69.1 20 0.00042 32.1 6.8 51 320-371 143-197 (203)
398 PF09670 Cas_Cas02710: CRISPR- 69.0 62 0.0013 32.3 11.3 66 268-346 130-197 (379)
399 KOG1497|consensus 68.9 1.1E+02 0.0025 29.4 13.3 90 315-405 100-199 (399)
400 KOG2114|consensus 68.0 49 0.0011 36.0 10.5 34 268-301 367-400 (933)
401 KOG1914|consensus 67.8 33 0.00072 35.3 8.8 73 308-381 10-82 (656)
402 KOG0546|consensus 67.7 2.8 6.1E-05 40.5 1.4 79 275-368 281-359 (372)
403 cd02680 MIT_calpain7_2 MIT: do 67.0 7.3 0.00016 28.8 3.2 35 267-301 4-38 (75)
404 KOG2396|consensus 66.8 42 0.00092 34.3 9.3 81 334-414 87-167 (568)
405 PRK15180 Vi polysaccharide bio 66.4 33 0.00073 34.7 8.4 96 278-388 298-393 (831)
406 PF09205 DUF1955: Domain of un 64.1 58 0.0013 27.2 8.0 62 320-381 87-149 (161)
407 cd02681 MIT_calpain7_1 MIT: do 63.9 12 0.00026 27.8 3.8 17 364-380 18-34 (76)
408 KOG2041|consensus 63.9 24 0.00051 37.5 7.1 50 323-376 827-876 (1189)
409 smart00745 MIT Microtubule Int 63.5 32 0.0007 25.2 6.3 17 368-384 31-47 (77)
410 COG3629 DnrI DNA-binding trans 63.2 18 0.00039 34.3 5.8 66 267-347 151-216 (280)
411 PF11846 DUF3366: Domain of un 63.2 35 0.00075 30.3 7.6 50 334-384 127-176 (193)
412 KOG1464|consensus 63.1 82 0.0018 29.6 9.7 105 274-381 150-260 (440)
413 COG5091 SGT1 Suppressor of G2 62.9 9.6 0.00021 35.4 3.8 104 277-385 3-112 (368)
414 smart00386 HAT HAT (Half-A-TPR 62.8 19 0.00042 20.6 4.2 30 332-361 1-30 (33)
415 KOG1464|consensus 62.1 21 0.00045 33.4 5.8 53 329-381 38-94 (440)
416 PF11207 DUF2989: Protein of u 61.4 8.7 0.00019 34.3 3.2 61 266-338 138-198 (203)
417 PF10952 DUF2753: Protein of u 60.7 93 0.002 25.5 8.5 80 321-400 4-107 (140)
418 COG4941 Predicted RNA polymera 60.5 53 0.0011 31.9 8.2 75 320-394 331-407 (415)
419 cd02683 MIT_1 MIT: domain cont 60.3 58 0.0013 24.2 7.0 19 368-386 29-47 (77)
420 PF01239 PPTA: Protein prenylt 60.1 24 0.00052 20.7 4.1 27 337-363 2-28 (31)
421 PF12739 TRAPPC-Trs85: ER-Golg 59.5 1.3E+02 0.0029 30.4 11.8 102 271-381 210-329 (414)
422 COG4455 ImpE Protein of avirul 58.9 1E+02 0.0023 28.1 9.4 61 278-353 10-70 (273)
423 COG4649 Uncharacterized protei 58.5 26 0.00056 30.6 5.4 99 271-380 96-195 (221)
424 PF00244 14-3-3: 14-3-3 protei 57.7 16 0.00035 33.8 4.5 55 285-346 142-197 (236)
425 COG5159 RPN6 26S proteasome re 57.1 1.6E+02 0.0035 28.0 10.7 64 273-343 7-70 (421)
426 KOG3783|consensus 57.1 66 0.0014 33.2 8.8 74 271-358 269-342 (546)
427 PF04053 Coatomer_WDAD: Coatom 56.9 33 0.00072 35.0 6.9 26 319-344 348-373 (443)
428 COG4649 Uncharacterized protei 56.1 1.4E+02 0.0031 26.2 11.6 111 276-400 65-181 (221)
429 KOG4014|consensus 55.6 1.1E+02 0.0025 27.0 8.8 78 269-365 68-157 (248)
430 KOG3616|consensus 55.4 38 0.00083 36.2 7.0 98 274-379 711-818 (1636)
431 PF12854 PPR_1: PPR repeat 54.1 30 0.00065 20.9 3.9 26 351-376 6-31 (34)
432 KOG0529|consensus 54.0 2.2E+02 0.0048 28.5 11.6 71 332-402 89-161 (421)
433 PF15469 Sec5: Exocyst complex 53.6 35 0.00075 30.0 5.8 22 279-300 96-117 (182)
434 cd02679 MIT_spastin MIT: domai 53.0 30 0.00065 25.9 4.4 15 334-348 5-19 (79)
435 PF04053 Coatomer_WDAD: Coatom 52.6 46 0.001 34.0 7.1 54 319-380 322-375 (443)
436 COG5191 Uncharacterized conser 52.1 10 0.00022 36.2 2.1 64 278-356 116-180 (435)
437 PF04212 MIT: MIT (microtubule 52.0 47 0.001 23.8 5.3 13 371-383 31-43 (69)
438 PRK13184 pknD serine/threonine 51.8 69 0.0015 36.0 8.7 69 318-388 552-627 (932)
439 KOG1258|consensus 51.8 2.4E+02 0.0052 29.7 11.9 54 320-373 368-421 (577)
440 KOG1258|consensus 51.1 3.2E+02 0.0069 28.8 14.4 105 269-388 297-402 (577)
441 KOG0739|consensus 49.5 71 0.0015 30.6 7.1 36 265-300 6-41 (439)
442 COG4499 Predicted membrane pro 49.4 1.2E+02 0.0027 29.8 8.9 56 317-375 280-336 (434)
443 COG1747 Uncharacterized N-term 49.3 1.6E+02 0.0034 30.5 9.8 96 318-417 66-161 (711)
444 cd02656 MIT MIT: domain contai 47.8 64 0.0014 23.5 5.6 17 368-384 29-45 (75)
445 KOG3807|consensus 47.7 2E+02 0.0043 28.0 9.8 58 321-378 278-337 (556)
446 KOG2422|consensus 47.6 3.6E+02 0.0079 28.4 16.7 29 326-354 350-379 (665)
447 KOG3783|consensus 47.3 1.8E+02 0.004 30.1 10.2 65 320-384 451-523 (546)
448 PF03745 DUF309: Domain of unk 47.3 99 0.0022 21.8 7.0 58 274-340 4-61 (62)
449 PF12652 CotJB: CotJB protein; 47.2 87 0.0019 23.4 6.0 54 361-418 4-57 (78)
450 KOG4563|consensus 47.0 30 0.00066 33.7 4.5 58 318-375 41-106 (400)
451 PF07219 HemY_N: HemY protein 45.9 1.4E+02 0.003 23.6 7.7 51 316-366 57-107 (108)
452 PF07079 DUF1347: Protein of u 45.0 1.9E+02 0.004 29.5 9.5 100 271-380 8-107 (549)
453 PF02184 HAT: HAT (Half-A-TPR) 44.6 44 0.00095 20.2 3.3 25 334-359 3-27 (32)
454 PF05053 Menin: Menin; InterP 44.5 1.3E+02 0.0029 31.4 8.7 60 336-395 297-367 (618)
455 PF08311 Mad3_BUB1_I: Mad3/BUB 43.7 97 0.0021 25.4 6.6 82 286-379 43-126 (126)
456 cd02680 MIT_calpain7_2 MIT: do 43.4 1.3E+02 0.0029 22.2 8.3 18 364-381 18-35 (75)
457 smart00671 SEL1 Sel1-like repe 43.0 61 0.0013 19.1 4.1 27 354-380 3-33 (36)
458 PF02064 MAS20: MAS20 protein 42.1 65 0.0014 26.3 5.1 33 357-389 68-100 (121)
459 KOG4563|consensus 42.0 55 0.0012 32.0 5.4 67 265-338 37-103 (400)
460 smart00101 14_3_3 14-3-3 homol 41.8 85 0.0018 29.2 6.5 55 285-346 144-199 (244)
461 PF08238 Sel1: Sel1 repeat; I 41.4 56 0.0012 19.8 3.9 13 368-380 24-36 (39)
462 PF01535 PPR: PPR repeat; Int 41.1 41 0.00088 19.0 3.0 24 322-345 4-27 (31)
463 KOG1914|consensus 40.1 2.1E+02 0.0045 29.8 9.2 75 342-418 10-84 (656)
464 PRK15180 Vi polysaccharide bio 39.0 3.8E+02 0.0083 27.6 10.7 63 337-399 761-823 (831)
465 PRK15490 Vi polysaccharide bio 38.8 3.9E+02 0.0085 28.3 11.4 58 317-376 41-98 (578)
466 KOG3677|consensus 38.1 57 0.0012 32.5 4.9 51 326-380 243-300 (525)
467 COG5600 Transcription-associat 36.9 3.6E+02 0.0077 26.8 9.9 100 278-384 139-252 (413)
468 COG5159 RPN6 26S proteasome re 36.8 2.3E+02 0.0049 27.1 8.3 70 312-381 119-194 (421)
469 COG2909 MalT ATP-dependent tra 35.8 2E+02 0.0044 31.8 8.8 98 270-377 459-564 (894)
470 PRK00226 greA transcription el 35.5 49 0.0011 28.4 3.7 23 85-107 122-144 (157)
471 PF13812 PPR_3: Pentatricopept 35.1 92 0.002 17.9 4.0 27 320-346 3-29 (34)
472 KOG0276|consensus 33.5 1.7E+02 0.0037 30.9 7.5 21 360-380 729-749 (794)
473 PF09122 DUF1930: Domain of un 32.8 61 0.0013 22.8 3.0 24 200-223 34-57 (68)
474 TIGR00756 PPR pentatricopeptid 32.8 90 0.002 17.8 3.7 23 323-345 5-27 (35)
475 cd02684 MIT_2 MIT: domain cont 32.6 2E+02 0.0044 21.1 6.4 14 335-348 4-17 (75)
476 PF07219 HemY_N: HemY protein 32.2 1.1E+02 0.0023 24.3 5.0 36 263-298 53-88 (108)
477 cd07642 BAR_ASAP2 The Bin/Amph 32.1 3.9E+02 0.0085 24.3 11.2 97 320-416 27-126 (215)
478 KOG0890|consensus 31.9 2.4E+02 0.0052 34.9 9.3 64 267-347 1668-1731(2382)
479 KOG4014|consensus 31.8 2.3E+02 0.0051 25.1 7.1 31 268-298 104-141 (248)
480 cd02677 MIT_SNX15 MIT: domain 31.8 2E+02 0.0044 21.2 5.9 14 335-348 4-17 (75)
481 KOG0985|consensus 31.6 5.9E+02 0.013 29.1 11.4 58 318-380 1104-1161(1666)
482 KOG2758|consensus 31.5 2.1E+02 0.0046 27.7 7.3 69 313-381 124-196 (432)
483 PF09797 NatB_MDM20: N-acetylt 31.3 2.5E+02 0.0054 27.7 8.5 45 333-377 198-242 (365)
484 cd00280 TRFH Telomeric Repeat 31.3 1.2E+02 0.0026 26.8 5.3 56 361-417 120-176 (200)
485 COG2015 Alkyl sulfatase and re 31.0 50 0.0011 33.6 3.3 122 204-366 373-500 (655)
486 KOG2709|consensus 30.4 80 0.0017 31.5 4.5 28 320-347 24-51 (560)
487 cd09239 BRO1_HD-PTP_like Prote 29.6 4.8E+02 0.011 25.8 10.1 37 264-300 109-154 (361)
488 PHA02122 hypothetical protein 29.4 89 0.0019 21.3 3.2 20 47-67 39-58 (65)
489 PRK15326 type III secretion sy 28.9 2.5E+02 0.0055 21.0 7.5 35 366-400 21-55 (80)
490 PF04190 DUF410: Protein of un 28.1 3.6E+02 0.0078 25.3 8.5 99 268-376 9-114 (260)
491 KOG0276|consensus 27.6 2.2E+02 0.0047 30.2 7.2 50 327-381 646-695 (794)
492 COG1747 Uncharacterized N-term 27.6 6.4E+02 0.014 26.3 10.3 55 331-385 218-292 (711)
493 KOG1811|consensus 26.3 3.2E+02 0.0069 28.9 8.0 54 329-385 567-620 (1141)
494 KOG4056|consensus 26.1 1.5E+02 0.0032 24.7 4.7 37 357-393 86-122 (143)
495 KOG0890|consensus 25.7 3.7E+02 0.0079 33.4 9.4 69 312-382 1664-1732(2382)
496 PRK11619 lytic murein transgly 25.7 4.4E+02 0.0096 28.5 9.6 54 327-380 321-374 (644)
497 COG3014 Uncharacterized protei 25.6 6.5E+02 0.014 24.8 10.6 148 274-423 63-263 (449)
498 PF13041 PPR_2: PPR repeat fam 25.5 2E+02 0.0043 18.7 5.8 28 320-347 5-32 (50)
499 TIGR01461 greB transcription e 25.3 1.7E+02 0.0037 25.1 5.3 24 85-108 119-142 (156)
500 PF10938 YfdX: YfdX protein; 25.2 2.7E+02 0.0059 23.8 6.5 72 268-346 74-145 (155)
No 1
>KOG0543|consensus
Probab=100.00 E-value=1.2e-67 Score=496.26 Aligned_cols=365 Identities=47% Similarity=0.820 Sum_probs=348.3
Q ss_pred eCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCC
Q psy4385 38 TPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS 117 (473)
Q Consensus 38 ~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~ 117 (473)
++|+|+..|..||.|.+||++++.||+.||||.+ +.|+.|.+|.+.++.||..++.+|+. |+.+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~ 65 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS 65 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence 4799999999999999999999999999999988 88999999999999999999999998 88899
Q ss_pred CCCCCCCCceEEEEEEEeeeeccCCCCCCCCceEEEEecCCC-cCCCCCCCeEEEEEEeeeCCeEEEeceeeEEeCCCcc
Q psy4385 118 PPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGAS-FSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSE 196 (473)
Q Consensus 118 ~~~ip~~~~l~~~v~l~~~~~~~~~~~~d~~i~k~i~~~g~g-~~~p~~~~~v~~~~~g~~~g~~~~~~~~~~~lg~~~~ 196 (473)
||.||++++|.|+|+|+ |++|+|+|+++|.| ..+|.++..|+|||.|.+.+.+|+++...|.++.|.+
T Consensus 66 pp~ip~~a~l~fe~el~-----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~~f~~~~~~fe~~~Ge~ 134 (397)
T KOG0543|consen 66 PPKIPSNATLLFEVELL-----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDGVFDQRELRFEFGEGED 134 (397)
T ss_pred CCCCCCCcceeeeeccc-----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCcceeccccceEEecCCc
Confidence 99999999999999998 78999999999999 9999999999999999997779999877788777777
Q ss_pred cCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeecccc-ccccccccCchhHHHhhHHHHhh
Q psy4385 197 YDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE-KIKDTWQLNSDEKLEQGKLLKER 275 (473)
Q Consensus 197 ~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~-~~~~~~~~~~~~~~~~a~~~~~~ 275 (473)
..||.||+.||++|++||++.|.++|.|+||..+...+.|||++.+.|+++|.+|+ .....|.+...+++..|...++.
T Consensus 135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~ 214 (397)
T KOG0543|consen 135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKER 214 (397)
T ss_pred cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHh
Confidence 78999999999999999999999999999998888888999999999999999999 88899999999999999999999
Q ss_pred cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHH
Q psy4385 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAF 355 (473)
Q Consensus 276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~ 355 (473)
||.+|+.|+|..|+..|++|++++++....++++..........+|+|+|.||+|+++|..|+..|+++|.++|+|+||+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Q psy4385 356 FRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEE 428 (473)
Q Consensus 356 ~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~~~~~ 428 (473)
||+|+||+.+++|+.|+.+|++|++++|+|+.+..+|..|.++++++.++++++|++||.++...+.+.+...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~k~~s~~ 367 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESAKTKSEA 367 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999987765554443
No 2
>KOG0545|consensus
Probab=100.00 E-value=1e-33 Score=247.53 Aligned_cols=311 Identities=27% Similarity=0.417 Sum_probs=244.7
Q ss_pred cCCCCEEEEEEeCCCCCC-CCCCCCEEEEEEEEEec--CCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEE
Q psy4385 27 TDDGGVLKEIKTPGVGDT-TPSAGCKVKVHYTGTLL--DGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAV 103 (473)
Q Consensus 27 ~~~~gv~~~i~~~g~g~~-~~~~gd~V~v~y~~~~~--dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~ 103 (473)
+...||.|+|+..|+|.. -..+|..|+|||..... .++++|+|+..|+|+.+++|...-+|-|+..|.+|+++|.+.
T Consensus 7 l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred ccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence 456799999999999973 23689999999999885 467999999999999999999999999999999999999999
Q ss_pred EEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeeeccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeeeCCeEEE
Q psy4385 104 FTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQ 183 (473)
Q Consensus 104 v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~~g~~~~ 183 (473)
|+|.-... +.|- +++=.-.++. .| ..|.++ +.|..|.
T Consensus 87 F~~d~~~~---------------vqYP--fvsksLRdia-------------~G---K~p~e~---~~H~Cg~------- 123 (329)
T KOG0545|consen 87 FWCDTIHT---------------VQYP--FVSKSLRDIA-------------QG---KDPTEW---HRHCCGL------- 123 (329)
T ss_pred hhhhhhhe---------------eech--hHHHHHHHHh-------------cC---CCcchh---hhhhhhh-------
Confidence 98863221 1111 1100000110 02 233333 1122221
Q ss_pred eceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccccc----cccccc
Q psy4385 184 EGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK----IKDTWQ 259 (473)
Q Consensus 184 ~~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~----~~~~~~ 259 (473)
..|... ...+|. ..+.+ ..+..++.|.++|..++. ..+.|.
T Consensus 124 ------------------------a~m~~~--------~glGye--dLDeL-~knPqpL~FviellqVe~P~qYq~e~Wq 168 (329)
T KOG0545|consen 124 ------------------------ANMFAY--------HGLGYE--DLDEL-QKNPQPLVFVIELLQVEAPSQYQRETWQ 168 (329)
T ss_pred ------------------------HHHHHh--------cCCChh--hHHHH-hhCCCceEeehhhhhccCchhhcccccc
Confidence 111000 001111 11100 233467889998887765 468999
Q ss_pred cCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC---CCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q psy4385 260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF---DGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP 336 (473)
Q Consensus 260 ~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~---~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~ 336 (473)
|+.++++.....+.+.||.+|+.|+|.+|...|..||-++.. ...+.+.+|.+++.....+++|.++|+++.++|.+
T Consensus 169 lsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ye 248 (329)
T KOG0545|consen 169 LSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYE 248 (329)
T ss_pred CCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999988766 33456789999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA-VQKLTQTKQKLREQKIKEKQVYANMFD 415 (473)
Q Consensus 337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~-~~~l~~~~~~~~~~~~~~k~~~~~~f~ 415 (473)
++++|+.+|..+|.|+||||+||.|+....+.++|.++|.++|+++|.-..+ ..+|..+..++.+..+.++-.|++||+
T Consensus 249 vleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~kmfs 328 (329)
T KOG0545|consen 249 VLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKMFS 328 (329)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999987654 689999999999999999999999996
No 3
>KOG0544|consensus
Probab=99.97 E-value=5e-30 Score=188.52 Aligned_cols=106 Identities=55% Similarity=0.989 Sum_probs=103.4
Q ss_pred CEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCC
Q psy4385 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEY 110 (473)
Q Consensus 31 gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ 110 (473)
|+.+.++.+|+|...|+.||.|++||++.+.||+.||||.+++.|+.|.+|.+.+|.||++++..|.+||++++.|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 68899999999987999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385 111 AYGKQGSPPTIPPDSTLVFEVEMISW 136 (473)
Q Consensus 111 ayg~~g~~~~ip~~~~l~~~v~l~~~ 136 (473)
|||..|.|..||||++|+|+|||+++
T Consensus 82 aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccCCCCCCCccCCCcEEEEEEEEEec
Confidence 99999999999999999999999986
No 4
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.4e-28 Score=209.02 Aligned_cols=107 Identities=51% Similarity=0.842 Sum_probs=103.0
Q ss_pred cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106 (473)
Q Consensus 27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i 106 (473)
+.++|+.|++++.|.|. .|..++.|++||++++.||++||||+.++.|+.|.+| .+|+||.+||.+|++|++++++|
T Consensus 98 ~~~sgl~y~~~~~G~G~-~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~I 174 (205)
T COG0545 98 TLPSGLQYKVLKAGDGA-APKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTI 174 (205)
T ss_pred ECCCCcEEEEEeccCCC-CCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEe
Confidence 36789999999999997 7999999999999999999999999999999999997 89999999999999999999999
Q ss_pred cCCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385 107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136 (473)
Q Consensus 107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~ 136 (473)
||++|||.+|.+..||||++|+|+|+|+++
T Consensus 175 P~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 175 PPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred CchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 999999999988889999999999999986
No 5
>KOG0543|consensus
Probab=99.95 E-value=1.1e-26 Score=219.47 Aligned_cols=262 Identities=31% Similarity=0.441 Sum_probs=189.4
Q ss_pred CCCEEEEEEeCCCC-CCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCC-CccchhHHHHhccCCCCcEEEEEe
Q psy4385 29 DGGVLKEIKTPGVG-DTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGK-GQVIKAWDRGIATMKKDEVAVFTC 106 (473)
Q Consensus 29 ~~gv~~~i~~~g~g-~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~-~~~~~g~~~~l~~m~~Ge~~~v~i 106 (473)
|++|.++|+++|.| ...|..|..|+|||.+++.++ +|+++ ...+.|.+|. ..++.||+.+|..|++||.+.|+|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~---~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i 158 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR---ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTI 158 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc---ccceEEecCCccchhHHHHHHHHhcCccceEEEEe
Confidence 99999999999999 558999999999999999777 77765 2347888888 479999999999999999999999
Q ss_pred cCCCCcC-CCCCCCCCCCCCceEEEEEEEeee-eccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeeeCCeEEEe
Q psy4385 107 KPEYAYG-KQGSPPTIPPDSTLVFEVEMISWE-AEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQE 184 (473)
Q Consensus 107 ~~~~ayg-~~g~~~~ip~~~~l~~~v~l~~~~-~~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~~g~~~~~ 184 (473)
+|+|||| ..+++|.||||++|.|+|+|++|. ..+.++.....
T Consensus 159 ~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~------------------------------------ 202 (397)
T KOG0543|consen 159 DPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAE------------------------------------ 202 (397)
T ss_pred CcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchH------------------------------------
Confidence 9999999 566899999999999999999998 44443221111
Q ss_pred ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccccccccccc---cC
Q psy4385 185 GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ---LN 261 (473)
Q Consensus 185 ~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~~~~~~---~~ 261 (473)
+.++.|-..-..|- +.+ ..-.|..+...|+++...+. +.
T Consensus 203 ----------------e~l~~A~~~ke~Gn---~~f-------------------K~gk~~~A~~~Yerav~~l~~~~~~ 244 (397)
T KOG0543|consen 203 ----------------ERLEAADRKKERGN---VLF-------------------KEGKFKLAKKRYERAVSFLEYRRSF 244 (397)
T ss_pred ----------------HHHHHHHHHHHhhh---HHH-------------------hhchHHHHHHHHHHHHHHhhccccC
Confidence 12222211110000 000 00011222222222111111 01
Q ss_pred chhHH-----HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q psy4385 262 SDEKL-----EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP 336 (473)
Q Consensus 262 ~~~~~-----~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~ 336 (473)
..+.. -....+.+++.++.+.++|..|+....++| .+++.+..+++.+|.+++.+++|+.
T Consensus 245 ~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL---------------e~~~~N~KALyRrG~A~l~~~e~~~ 309 (397)
T KOG0543|consen 245 DEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL---------------ELDPNNVKALYRRGQALLALGEYDL 309 (397)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH---------------hcCCCchhHHHHHHHHHHhhccHHH
Confidence 11111 123457789999999999999999999999 7788899999999999999999999
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCC
Q psy4385 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELA-EKDFQKVLQIDP 383 (473)
Q Consensus 337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A-~~~~~~al~l~P 383 (473)
|+.++++|++++|+|-.+..-+..+..+..++.+. .+.|.+.+..-+
T Consensus 310 A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 310 ARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999977777777776666665544 555665555433
No 6
>KOG0549|consensus
Probab=99.93 E-value=9.2e-26 Score=189.30 Aligned_cols=111 Identities=41% Similarity=0.730 Sum_probs=101.0
Q ss_pred CCCCEEEEEEeC-CCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385 28 DDGGVLKEIKTP-GVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106 (473)
Q Consensus 28 ~~~gv~~~i~~~-g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i 106 (473)
+++.+...+++. -.+..+.+.||.|.+||++.+.||+.|||||+++.|+.|.+|.+++|+||+.+|.+||+||++.++|
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~I 145 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLII 145 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEec
Confidence 345555555554 2377778999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385 107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138 (473)
Q Consensus 107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~ 138 (473)
||+++||+.|.++.||++++|+|+|||+++..
T Consensus 146 Pp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 146 PPHLGYGERGAPPKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred CccccCccCCCCCCCCCCeeEEEEEEEEEeec
Confidence 99999999999999999999999999999875
No 7
>KOG0549|consensus
Probab=99.92 E-value=1.3e-24 Score=182.44 Aligned_cols=169 Identities=21% Similarity=0.378 Sum_probs=138.9
Q ss_pred EEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeeec--cCCCCCCCCceEEEEe
Q psy4385 78 FDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE--DISPTHDGGIRREILE 155 (473)
Q Consensus 78 ~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~~--~~~~~~d~~i~k~i~~ 155 (473)
|.+|.+.+++|.+.++.+|+.|+++.|++||+++||..+.. .-..+++.+.++.+... ...+..+..+.-.+++
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~ 76 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK 76 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence 35788999999999999999999999999999999965532 22346777777665431 1112233444444444
Q ss_pred cC-CCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCC
Q psy4385 156 EG-ASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSG 228 (473)
Q Consensus 156 ~g-~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~ 228 (473)
+- ....+...||.+++||+|.+ ||+.||++ |++|.||.++ |++||+++|..|++||++.+.|||+++||.
T Consensus 77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gq---VIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~ 153 (188)
T KOG0549|consen 77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQ---VIKGWDQGLLGMCVGEKRKLIIPPHLGYGE 153 (188)
T ss_pred CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCc---eeccHhHHhhhhCcccceEEecCccccCcc
Confidence 42 25678889999999999988 99999983 8999999998 999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCceeeeeecccccc
Q psy4385 229 KGNDKLGVPSNKPATYTITMNNFEKI 254 (473)
Q Consensus 229 ~g~~~~~ip~~~~~~y~i~L~~~~~~ 254 (473)
.|.+.. ||+++.+.|+++|......
T Consensus 154 ~G~~~~-IP~~A~LiFdiELv~i~~~ 178 (188)
T KOG0549|consen 154 RGAPPK-IPGDAVLIFDIELVKIERG 178 (188)
T ss_pred CCCCCC-CCCCeeEEEEEEEEEeecC
Confidence 998776 9999999999999988764
No 8
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.92 E-value=2.8e-24 Score=192.35 Aligned_cols=115 Identities=42% Similarity=0.640 Sum_probs=106.0
Q ss_pred hhcccCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhcc
Q psy4385 16 IRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIAT 95 (473)
Q Consensus 16 ~~~~~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~ 95 (473)
+..++|+.. +++|+.|+|+++|+|. .|..||.|+|||++++.||++|++|+.++.|+.|.+| .+++||+++|.+
T Consensus 91 ~~k~~gv~~---t~sGl~y~vi~~G~G~-~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~ 164 (206)
T PRK11570 91 NAKKEGVNS---TESGLQFRVLTQGEGA-IPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTL 164 (206)
T ss_pred hhhcCCcEE---CCCCcEEEEEeCCCCC-CCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcC
Confidence 444456655 4569999999999997 7999999999999999999999999998899999995 699999999999
Q ss_pred CCCCcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385 96 MKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136 (473)
Q Consensus 96 m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~ 136 (473)
|++|++++|+|||++|||+.|.++.|||+++|+|+|+|++|
T Consensus 165 M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 165 MPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CCCCCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 99999999999999999999999999999999999999987
No 9
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.89 E-value=1.1e-22 Score=177.61 Aligned_cols=110 Identities=25% Similarity=0.392 Sum_probs=102.1
Q ss_pred ecCCCCEEEEEEeC--CCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEE
Q psy4385 26 LTDDGGVLKEIKTP--GVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAV 103 (473)
Q Consensus 26 ~~~~~gv~~~i~~~--g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~ 103 (473)
..+++|++|.++.. |+|. .|+.||.|++||++++.||++|++++.. .|+.|.+|.+.+++||+++|.+|++||+++
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g~-~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~ 142 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEGT-TPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT 142 (177)
T ss_pred eECCCccEEEEEEecCCCCC-cCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence 56788999999976 6665 7999999999999999999999999864 599999999999999999999999999999
Q ss_pred EEecCCCCcCCCCCCCCCCCCCceEEEEEEEeee
Q psy4385 104 FTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137 (473)
Q Consensus 104 v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~ 137 (473)
|+|||++|||..|.+..||||++|+|+|+|++|.
T Consensus 143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999999999888999999999999999984
No 10
>KOG0552|consensus
Probab=99.88 E-value=2.7e-22 Score=177.37 Aligned_cols=107 Identities=47% Similarity=0.790 Sum_probs=101.1
Q ss_pred cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEec-CCCEEeccCCCCccEE-EEeCCCccchhHHHHhccCCCCcEEEE
Q psy4385 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLL-DGTVFDSSKTRGEPFE-FDLGKGQVIKAWDRGIATMKKDEVAVF 104 (473)
Q Consensus 27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~-dg~~~~st~~~~~p~~-~~~g~~~~~~g~~~~l~~m~~Ge~~~v 104 (473)
+..+||.|+.++.|.|+ .+..|+.|.+||.+++. +|++||+++. +.|+. |.+|.+.+|+||+.+|.+|++|.+++|
T Consensus 117 tl~~Gl~y~D~~vG~G~-~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 117 TLPGGLRYEDLRVGSGP-SAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred ecCCCcEEEEEEecCCC-CCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 56899999999999998 79999999999999998 9999999975 46888 999999999999999999999999999
Q ss_pred EecCCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385 105 TCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136 (473)
Q Consensus 105 ~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~ 136 (473)
+|||++|||..|.+ .||||++|+|+|+|+.+
T Consensus 195 iIPp~lgYg~~g~~-~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 195 IIPPELGYGKKGVP-EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence 99999999999976 89999999999999986
No 11
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.86 E-value=3.2e-21 Score=178.93 Aligned_cols=118 Identities=39% Similarity=0.712 Sum_probs=106.2
Q ss_pred HhhhcccCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHh
Q psy4385 14 KRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGI 93 (473)
Q Consensus 14 ~~~~~~~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l 93 (473)
..+..++|+.. .++|++|+|+++|+|. .|..||.|+|||++++.||++|++++.++.|+.|.++ .++|||+++|
T Consensus 133 ~~~~k~~gv~~---t~sGl~y~Vi~~G~G~-~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL 206 (269)
T PRK10902 133 EKFAKEKGVKT---TSTGLLYKVEKEGTGE-APKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGL 206 (269)
T ss_pred HHhccCCCcEE---CCCccEEEEEeCCCCC-CCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHH
Confidence 34445556643 5779999999999997 7999999999999999999999999988899999995 5999999999
Q ss_pred ccCCCCcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385 94 ATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138 (473)
Q Consensus 94 ~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~ 138 (473)
.+|++|+++.|+||++++||..|.+ .||||++|+|+|+|+++..
T Consensus 207 ~~Mk~Gek~~l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 207 KNIKKGGKIKLVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKP 250 (269)
T ss_pred hcCCCCcEEEEEECchhhCCCCCCC-CCCCCCcEEEEEEEEEecc
Confidence 9999999999999999999999865 7999999999999999864
No 12
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.84 E-value=1.1e-20 Score=149.66 Aligned_cols=93 Identities=55% Similarity=0.938 Sum_probs=88.1
Q ss_pred CCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCC-CCC
Q psy4385 42 GDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS-PPT 120 (473)
Q Consensus 42 g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~-~~~ 120 (473)
|+++|+.||.|+|||++++.+|++|++++..+.|+.|.+|.+.+++||+++|.+|++||+++|+|||+++||..+. ++.
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ 80 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK 80 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence 5567999999999999999999999999888899999999999999999999999999999999999999999987 557
Q ss_pred CCCCCceEEEEEEE
Q psy4385 121 IPPDSTLVFEVEMI 134 (473)
Q Consensus 121 ip~~~~l~~~v~l~ 134 (473)
|||+++|+|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999986
No 13
>KOG0553|consensus
Probab=99.84 E-value=1.1e-20 Score=172.21 Aligned_cols=125 Identities=32% Similarity=0.461 Sum_probs=119.1
Q ss_pred hHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385 264 EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK 343 (473)
Q Consensus 264 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 343 (473)
+....|+.+|..||.+.+.++|.+|+..|.+|| +++|.++.+|.|+|.+|.++|+|+.|+++|..
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI---------------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAI---------------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 677889999999999999999999999999999 67777899999999999999999999999999
Q ss_pred HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385 344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK 403 (473)
Q Consensus 344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 403 (473)
||.+||+..|+|-|+|.||+.+|+|++|++.|++||++||+|...+..|..+..++++..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999988876654
No 14
>KOG0544|consensus
Probab=99.81 E-value=1.2e-19 Score=133.84 Aligned_cols=99 Identities=21% Similarity=0.544 Sum_probs=92.6
Q ss_pred ceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecC
Q psy4385 149 IRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQP 222 (473)
Q Consensus 149 i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~ 222 (473)
+.+.++..|+|...|..|++|++||+|.+ ||+.||++ |+.|.||.|. |+.||+.++..|.+||++.+.|+|
T Consensus 3 v~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkge---VIkGwdegv~qmsvGekakLti~p 79 (108)
T KOG0544|consen 3 VEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGE---VIKGWDEGVAQMSVGEKAKLTISP 79 (108)
T ss_pred ceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcc---eeechhhcchhccccccceeeecc
Confidence 56889999999999999999999999999 99999983 8999999998 999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385 223 QHLWSGKGNDKLGVPSNKPATYTITMNNF 251 (473)
Q Consensus 223 ~~~~~~~g~~~~~ip~~~~~~y~i~L~~~ 251 (473)
.|+||..|. ...||||+.+.|+++|..+
T Consensus 80 d~aYG~~G~-p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 80 DYAYGPRGH-PGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccCCCCC-CCccCCCcEEEEEEEEEec
Confidence 999999994 4579999999999999764
No 15
>KOG4234|consensus
Probab=99.80 E-value=7.9e-19 Score=149.99 Aligned_cols=133 Identities=32% Similarity=0.479 Sum_probs=121.6
Q ss_pred HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344 (473)
Q Consensus 265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 344 (473)
.+..+..++..||.+|+.|+|.+|...|..||.+++.. .......+|.|+|.|++|++.++.||..|.+|
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~----------~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST----------STEERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc----------cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 46778999999999999999999999999999988863 33567889999999999999999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK 407 (473)
Q Consensus 345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 407 (473)
|+++|.+.+|+.||+.+|.++..|++|+.+|+++++++|....++..+.++-..+....++.+
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK 223 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK 223 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888887766665554
No 16
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=8e-17 Score=139.01 Aligned_cols=100 Identities=22% Similarity=0.506 Sum_probs=92.0
Q ss_pred CCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEE
Q psy4385 145 HDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRL 218 (473)
Q Consensus 145 ~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~ 218 (473)
-.+++..++++.|.| ..|..+++|++||.|++ +|++||++ |+.|.+| . ||+||..+|..|++|++..+
T Consensus 99 ~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~---vI~Gw~egl~~M~vG~k~~l 172 (205)
T COG0545 99 LPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--G---VIPGWDEGLQGMKVGGKRKL 172 (205)
T ss_pred CCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--C---eeehHHHHHhhCCCCceEEE
Confidence 356789999999988 88999999999999999 99999983 8999999 2 99999999999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385 219 FVQPQHLWSGKGNDKLGVPSNKPATYTITMNNF 251 (473)
Q Consensus 219 ~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~ 251 (473)
+|||.++||..|.++. |||++.++|++.|.++
T Consensus 173 ~IP~~laYG~~g~~g~-Ippns~LvFeVeLl~v 204 (205)
T COG0545 173 TIPPELAYGERGVPGV-IPPNSTLVFEVELLDV 204 (205)
T ss_pred EeCchhccCcCCCCCC-CCCCCeEEEEEEEEec
Confidence 9999999999997766 9999999999999764
No 17
>KOG0548|consensus
Probab=99.66 E-value=3.7e-16 Score=152.20 Aligned_cols=118 Identities=31% Similarity=0.475 Sum_probs=112.4
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
+.+...++.||.+|+.|+|..|+.+|.+|| ..+|.++.+|.|+|.||++++++..|+.+|+.+++
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAI---------------kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAI---------------KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHH---------------hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 447778889999999999999999999999 77788999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
++|+++++|+|.|.|+..+.+|+.|++.|+.++++||++.++...+.+|...+
T Consensus 421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998765
No 18
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.65 E-value=5.9e-16 Score=132.75 Aligned_cols=85 Identities=26% Similarity=0.465 Sum_probs=78.3
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385 45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD 124 (473)
Q Consensus 45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~ 124 (473)
.++.|+.|++||++++.||++|+||+..+.|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||+ .+
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~--------~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGV--------PS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCC--------CC
Confidence 5788999999999999999999999877889999999999999999999999999999999999999998 56
Q ss_pred CceEEEEEEEeee
Q psy4385 125 STLVFEVEMISWE 137 (473)
Q Consensus 125 ~~l~~~v~l~~~~ 137 (473)
..++..+....|.
T Consensus 76 ~~~v~~vp~~~f~ 88 (156)
T PRK15095 76 PDLIQYFSRRDFM 88 (156)
T ss_pred hHHEEEecHHHCC
Confidence 7778887777664
No 19
>KOG4648|consensus
Probab=99.62 E-value=7.1e-16 Score=142.11 Aligned_cols=120 Identities=34% Similarity=0.468 Sum_probs=110.7
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD 342 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 342 (473)
++.+..+..+++.||.||++|+|++||.+|.+++ .+.|.++..+.|+|.+|++++.|..|..+|+
T Consensus 91 ~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~i---------------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 91 QQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAI---------------AVYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred HHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhh---------------ccCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 5667788889999999999999999999999999 5566678899999999999999999999999
Q ss_pred HHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397 (473)
Q Consensus 343 ~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 397 (473)
.|+.+|...+|||.||+.|...+|...+|.++++.+|+|.|++.+....++.+..
T Consensus 156 ~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 156 AAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999998887777666654
No 20
>KOG0547|consensus
Probab=99.61 E-value=3.9e-15 Score=143.16 Aligned_cols=127 Identities=24% Similarity=0.335 Sum_probs=107.9
Q ss_pred ccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q psy4385 259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAK 338 (473)
Q Consensus 259 ~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 338 (473)
.++.++++..|..++.+||.+|+.|+|++||.+|.+||.+++. -+..|.|+|.||..+|+|++.+
T Consensus 105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~---------------epiFYsNraAcY~~lgd~~~Vi 169 (606)
T KOG0547|consen 105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD---------------EPIFYSNRAACYESLGDWEKVI 169 (606)
T ss_pred ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC---------------CchhhhhHHHHHHHHhhHHHHH
Confidence 4567888999999999999999999999999999999966654 3779999999999999999999
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Q psy4385 339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID-PNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~ 400 (473)
++|++||+++|+.+|||+||+.|+..+|++++|+.|+.-..-++ =+|..+--.+.+++.++.
T Consensus 170 ed~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 170 EDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987544333 244455445555554443
No 21
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.58 E-value=2.3e-14 Score=122.65 Aligned_cols=113 Identities=14% Similarity=0.218 Sum_probs=105.9
Q ss_pred HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
+...|..++..|+|.+|+..|++++ .++|.+..+++++|.++.++|+|++|+..|++++.++|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al---------------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV---------------MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---------------HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 5678999999999999999999999 6677789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
+.+++++|.++..+|++++|+..|.+++.++|++...+..++.+...+
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877776554
No 22
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.58 E-value=1.6e-14 Score=142.26 Aligned_cols=117 Identities=27% Similarity=0.412 Sum_probs=110.0
Q ss_pred HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP 349 (473)
Q Consensus 270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 349 (473)
..+...|+.+|..++|..|+..|.+|| .++|.+..+|+++|.||+++|+|+.|+.++++|+.++|
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al---------------~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAI---------------DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 457788999999999999999999999 66667788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385 350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401 (473)
Q Consensus 350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 401 (473)
+++.+|+++|.+|+.+|+|++|+..|+++++++|++..++..+..|..++..
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999877743
No 23
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2e-14 Score=122.21 Aligned_cols=87 Identities=28% Similarity=0.388 Sum_probs=79.3
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385 45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD 124 (473)
Q Consensus 45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~ 124 (473)
.+..|+.|++||++++.||++||+|....+|+.|.+|.+++++||++||.+|.+|++..|.|||+.|||+ ++
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe--------~~ 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGE--------YD 73 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCC--------CC
Confidence 4788999999999999999999999775779999999999999999999999999999999999999999 67
Q ss_pred CceEEEEEEEeeeec
Q psy4385 125 STLVFEVEMISWEAE 139 (473)
Q Consensus 125 ~~l~~~v~l~~~~~~ 139 (473)
..++-.+..-.|...
T Consensus 74 ~~lvq~vp~~~F~~~ 88 (174)
T COG1047 74 PDLVQRVPRDEFQGV 88 (174)
T ss_pred hHHeEEecHHHhCcC
Confidence 788888877777653
No 24
>KOG0548|consensus
Probab=99.53 E-value=3.2e-14 Score=138.85 Aligned_cols=113 Identities=28% Similarity=0.330 Sum_probs=107.6
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
+..++..||+.|..|+|+.|+.+|..|| .++|.+..+|.|++.||.++++|.+|+.+..+.++++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai---------------~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAI---------------MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHH---------------ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4567889999999999999999999999 6666789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396 (473)
Q Consensus 349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 396 (473)
|+++|+|.|+|.++..+|+|++|+..|.+.|+.+|+|+.....|..+.
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999999999988887
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.52 E-value=2.8e-13 Score=144.14 Aligned_cols=136 Identities=26% Similarity=0.332 Sum_probs=118.7
Q ss_pred CCCCCCCceeeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHH
Q psy4385 235 GVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERK 314 (473)
Q Consensus 235 ~ip~~~~~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~ 314 (473)
..|+...+.+...+..++. ...|.++.+++...+..+++.|+.+|+.|+|.+|+..|+++|.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-------------- 158 (615)
T TIGR00990 94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-------------- 158 (615)
T ss_pred CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------
Confidence 3566666677766655543 5678999999999999999999999999999999999999995543
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387 (473)
Q Consensus 315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~ 387 (473)
. ...|+|+|.||+++|+|++|+.+|+++|+++|+++++|+++|.+|..+|+|++|+.+|..++.+++.+..
T Consensus 159 -~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~ 229 (615)
T TIGR00990 159 -D-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE 229 (615)
T ss_pred -c-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence 2 4579999999999999999999999999999999999999999999999999999999999888775543
No 26
>KOG0550|consensus
Probab=99.52 E-value=5.1e-14 Score=133.12 Aligned_cols=127 Identities=26% Similarity=0.375 Sum_probs=112.9
Q ss_pred HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344 (473)
Q Consensus 265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 344 (473)
.++....+++.||.+|++|+|..|...|..||.+.+. -...++.+|.|+|.+..++|+..+|+.+|+.|
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-----------n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-----------NKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-----------ccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 4466778899999999999999999999999988774 23457889999999999999999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385 345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK 403 (473)
Q Consensus 345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 403 (473)
+.+||..++||.++|.||+.+++|++|+++|++|++++.+ ..++..|.++...+++.+
T Consensus 314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSK 371 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999876 777777777776665433
No 27
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.51 E-value=2.8e-13 Score=114.14 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=97.9
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
+..+.++..|..++..|+++.|.+.|+..+ .++|.+...|+|||.|+..+|+|.+|+..|.+|+.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~---------------~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLT---------------IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 346688999999999999999999999999 77888999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~ 385 (473)
++|+++.++++.|.|++.+|+.+.|++.|+.|+...-.+
T Consensus 98 L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 98 IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999998443
No 28
>KOG0551|consensus
Probab=99.49 E-value=1.2e-13 Score=127.30 Aligned_cols=112 Identities=28% Similarity=0.384 Sum_probs=99.8
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.|..+++.||.||+.++|..|+..|.++|.--..+ ..+++.+|+|+|.|++.+|+|..|+.+|.+|+.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999543321 3467899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385 348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390 (473)
Q Consensus 348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 390 (473)
+|.+.||+||-++|++.+.++++|...++..+.++-+...+..
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~ 191 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE 191 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 9999999999999999999999999999988888766555433
No 29
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.48 E-value=3e-13 Score=121.39 Aligned_cols=99 Identities=16% Similarity=0.354 Sum_probs=89.7
Q ss_pred CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEE
Q psy4385 146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLF 219 (473)
Q Consensus 146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~ 219 (473)
+.++..+++++|.| ..|..+++|++||.|++ +|++|++. |..|.+|. +++||+.+|..|++|++..|.
T Consensus 101 ~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~~-----vipG~~eaL~~M~~G~k~~~~ 174 (206)
T PRK11570 101 ESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNG-----VIPGWIEALTLMPVGSKWELT 174 (206)
T ss_pred CCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEeec-----hhhHHHHHHcCCCCCCEEEEE
Confidence 45789999999999 68999999999999999 99999973 78999863 899999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385 220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNF 251 (473)
Q Consensus 220 i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~ 251 (473)
|||.++||..+.. ..|||++.++|+++|.++
T Consensus 175 IP~~lAYG~~g~~-~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 175 IPHELAYGERGAG-ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred ECHHHcCCCCCCC-CCcCCCCeEEEEEEEEEE
Confidence 9999999999864 579999999999999764
No 30
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.48 E-value=3.3e-13 Score=106.65 Aligned_cols=87 Identities=34% Similarity=0.596 Sum_probs=80.8
Q ss_pred cCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCC
Q psy4385 160 FSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDK 233 (473)
Q Consensus 160 ~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~ 233 (473)
..+|..+++|++||.++. +|++|++. +.+|.+|.+. +++||+.||..|+.||++.|.+++.++||..+...
T Consensus 2 ~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~---~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQ---VIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSS---SSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred CccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCc---cccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence 357999999999999999 99999986 8999999987 99999999999999999999999999999999877
Q ss_pred CCCCCCCCceeeeeec
Q psy4385 234 LGVPSNKPATYTITMN 249 (473)
Q Consensus 234 ~~ip~~~~~~y~i~L~ 249 (473)
..+|+++.+.|+++|.
T Consensus 79 ~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 PKIPPNSTLVFEIELL 94 (94)
T ss_dssp TTBTTTSEEEEEEEEE
T ss_pred CCcCCCCeEEEEEEEC
Confidence 6799999999999873
No 31
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.48 E-value=3.4e-13 Score=118.61 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=76.0
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385 45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD 124 (473)
Q Consensus 45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~ 124 (473)
+++.++.|+++|++++.||++|++|+. ..|+.|.+|.++++|||+++|.+|++|+++.|.|||+.|||+ .+
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe--------~d 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ--------YD 72 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCC--------CC
Confidence 367899999999999999999999965 579999999999999999999999999999999999999999 56
Q ss_pred CceEEEEEEEeee
Q psy4385 125 STLVFEVEMISWE 137 (473)
Q Consensus 125 ~~l~~~v~l~~~~ 137 (473)
..++.+|....|.
T Consensus 73 ~~lV~~vpr~~F~ 85 (196)
T PRK10737 73 ENLVQRVPKDVFM 85 (196)
T ss_pred hHHEEEecHHHCC
Confidence 7777777776664
No 32
>KOG4626|consensus
Probab=99.46 E-value=6e-14 Score=138.34 Aligned_cols=137 Identities=21% Similarity=0.174 Sum_probs=70.7
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC-------------------CChhHHHHHHHHHHHHHHH
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG-------------------FEGEQETERKKTLTACHLN 323 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~n 323 (473)
...+..+.++.++||+|-..+.|++|+.+|.+|+.+-+.... .......+++|....+|+|
T Consensus 246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~N 325 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNN 325 (966)
T ss_pred cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhH
Confidence 334455667777777777777777777777777732221000 0000111344444555555
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 324 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
+|+++-..|+..+|.++|++||.+.|+.+.+.+++|.+|.+.|.+++|...|.+|+++.|+...+..+|+.+++.+
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555554443
No 33
>KOG4626|consensus
Probab=99.45 E-value=1.2e-13 Score=136.35 Aligned_cols=156 Identities=14% Similarity=0.125 Sum_probs=122.3
Q ss_pred ccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC--------------Chh-----HHH
Q psy4385 251 FEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF--------------EGE-----QET 311 (473)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~--------------~~~-----~~~ 311 (473)
|+++...+......++..|..+-++|-.|+.+|..+.||..|++||..-+..... .+. ..-
T Consensus 268 ~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred chHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 3334444444455556666677777777777777777777777777665542210 000 112
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385 312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391 (473)
Q Consensus 312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 391 (473)
.+.|..+.+.+|+|..+..++.++.|...|.++++..|..+.|+.++|.+|.++|++++|+.+|+.|++++|...+++.+
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy4385 392 LTQTKQKLREQKIKE 406 (473)
Q Consensus 392 l~~~~~~~~~~~~~~ 406 (473)
++..++.+++-..+-
T Consensus 428 mGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAI 442 (966)
T ss_pred cchHHHHhhhHHHHH
Confidence 999998887665443
No 34
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.44 E-value=8.7e-13 Score=115.43 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=88.5
Q ss_pred CCCceEEEEecCCC-cCCCCCCCeEEEEEEeee-CCeEEEec----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEE
Q psy4385 146 DGGIRREILEEGAS-FSTPKDGANVEITLKGEC-EGKVFQEG----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLF 219 (473)
Q Consensus 146 d~~i~k~i~~~g~g-~~~p~~~~~v~~~~~g~~-~g~~~~~~----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~ 219 (473)
..++...++..+.| ...|..|+.|++||.+++ +|++|++. |..|.+|.+. +++||+.+|..|+.||++.|.
T Consensus 68 ~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~---vi~Gl~e~L~~Mk~Ge~~~~~ 144 (177)
T TIGR03516 68 QNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQD---LFSGLRDGLKLMKEGETATFL 144 (177)
T ss_pred CCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcc---hhHHHHHHHcCCCCCCEEEEE
Confidence 44556666665433 268999999999999998 99999874 7899999876 999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCceeeeeecccc
Q psy4385 220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE 252 (473)
Q Consensus 220 i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~ 252 (473)
+||.++||..|.. ..||+++.+.|+++|.++.
T Consensus 145 iP~~~AYG~~g~~-~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 145 FPSHKAYGYYGDQ-NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred ECHHHcCCCCCCC-CCcCcCCcEEEEEEEEEec
Confidence 9999999998865 4699999999999998764
No 35
>KOG0552|consensus
Probab=99.43 E-value=1e-12 Score=116.85 Aligned_cols=100 Identities=28% Similarity=0.540 Sum_probs=91.2
Q ss_pred CCCceEEEEecCCCcCCCCCCCeEEEEEEeee--CCeEEEec----eee-EEeCCCcccCCcHHHHHHHHhcccCcEEEE
Q psy4385 146 DGGIRREILEEGASFSTPKDGANVEITLKGEC--EGKVFQEG----TFS-FVLGEGSEYDIPENLEKALEKFKYKEKSRL 218 (473)
Q Consensus 146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~--~g~~~~~~----~~~-~~lg~~~~~~~~~gle~al~~m~~gE~~~~ 218 (473)
.++++..=++.|.| ..|..|..|.+||.|++ +|++||+. ++. |.+|.+. ||+||+.++.+|++|-++.+
T Consensus 119 ~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~---VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 119 PGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGE---VIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred CCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCC---CCchHHHhhhhhccCCeeEE
Confidence 46677777788886 89999999999999999 89999984 777 9999997 99999999999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385 219 FVQPQHLWSGKGNDKLGVPSNKPATYTITMNNF 251 (473)
Q Consensus 219 ~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~ 251 (473)
.|||.++||..+.+ .||+++.+.|+++|..+
T Consensus 195 iIPp~lgYg~~g~~--~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 195 IIPPELGYGKKGVP--EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EeCccccccccCcC--cCCCCCcEEEEEEEEec
Confidence 99999999999987 79999999999999764
No 36
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.42 E-value=2.6e-12 Score=108.76 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=105.1
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.+..+..+|..++..|++.+|+..|++++ ..+|.+..++.++|.|+++++++++|+..+++++.+
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~---------------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLA---------------AYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH---------------HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45668889999999999999999999999 556667899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385 348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398 (473)
Q Consensus 348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 398 (473)
+|.++..++.+|.+|...|++++|+..|+++++++|++.........+...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876665555443
No 37
>KOG4642|consensus
Probab=99.39 E-value=8.4e-13 Score=116.45 Aligned_cols=117 Identities=29% Similarity=0.424 Sum_probs=104.4
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
..+..+++.||.+|..++|..|+.+|.+|| .++|..+..|.|+|.||+++++|+.+..+|.+|++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI---------------~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAI---------------CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHH---------------hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 468899999999999999999999999999 77888899999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHH
Q psy4385 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP-----NNKAAVQKLTQTKQK 398 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P-----~~~~~~~~l~~~~~~ 398 (473)
++|+.++++|.+|++.+....|++|+..+++|+.+-- .-..+...|..+..+
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 9999999999999999999999999999999976632 123566666666543
No 38
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.37 E-value=4.7e-12 Score=117.92 Aligned_cols=100 Identities=24% Similarity=0.484 Sum_probs=90.0
Q ss_pred CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEE
Q psy4385 146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLF 219 (473)
Q Consensus 146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~ 219 (473)
+.++..+|+++|+| ..|..++.|+|||.|++ +|++|++. +..|.++. +++||+.+|..|+.|++..++
T Consensus 145 ~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~~-----vipG~~EaL~~Mk~Gek~~l~ 218 (269)
T PRK10902 145 STGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG-----VIPGWTEGLKNIKKGGKIKLV 218 (269)
T ss_pred CCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecCC-----cchHHHHHHhcCCCCcEEEEE
Confidence 56789999999999 58999999999999997 99999973 67777752 899999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCceeeeeeccccc
Q psy4385 220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK 253 (473)
Q Consensus 220 i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~ 253 (473)
||+.++||..+.. ++|+++.+.|+++|.++..
T Consensus 219 IP~~laYG~~g~~--gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 219 IPPELAYGKAGVP--GIPANSTLVFDVELLDVKP 250 (269)
T ss_pred ECchhhCCCCCCC--CCCCCCcEEEEEEEEEecc
Confidence 9999999999864 6999999999999988764
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=5.5e-12 Score=121.56 Aligned_cols=128 Identities=23% Similarity=0.314 Sum_probs=110.7
Q ss_pred ceeeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHH
Q psy4385 242 ATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321 (473)
Q Consensus 242 ~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
...++.+..+.+......+++. ..+..+.++|..+...|++..|+..|++++ .++|.++.+|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~---~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al---------------~l~P~~~~a~ 101 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDE---ERAQLHYERGVLYDSLGLRALARNDFSQAL---------------ALRPDMADAY 101 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcH---hhHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HcCCCCHHHH
Confidence 3445555555554443333333 346789999999999999999999999999 6667789999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387 (473)
Q Consensus 322 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~ 387 (473)
+++|.++..+|+|+.|+..++++++++|++..+++++|.++...|++++|+.+|+++++++|+++.
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999974
No 40
>KOG1126|consensus
Probab=99.36 E-value=2.4e-12 Score=128.78 Aligned_cols=179 Identities=18% Similarity=0.271 Sum_probs=151.2
Q ss_pred CcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccccccccccccCchhHHHhhHHHHhhcch
Q psy4385 199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTT 278 (473)
Q Consensus 199 ~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 278 (473)
+..--+.||..|++ .+.++|.++|...-+.... +....|+++...|..+..-....-.+|+-+|..
T Consensus 433 LQkdh~~Aik~f~R----AiQldp~faYayTLlGhE~----------~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKR----AIQLDPRFAYAYTLLGHES----------IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred hhhHHHHHHHHHHH----hhccCCccchhhhhcCChh----------hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 34455778888854 4778898877765443211 223445556666666666677788999999999
Q ss_pred hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385 279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR 358 (473)
Q Consensus 279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~ 358 (473)
|.++++|+.|.-+|++|+ +++|.+..+..-+|..+.++|+.++|++.+++|+.+||.|+-..|.+
T Consensus 499 y~Kqek~e~Ae~~fqkA~---------------~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAV---------------EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred eeccchhhHHHHHHHhhh---------------cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 999999999999999999 77888899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385 359 GNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406 (473)
Q Consensus 359 g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 406 (473)
|.++..+++|++|+..|++.-++-|++..++..++++.+++++...+-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 999999999999999999999999999999999999999887655444
No 41
>KOG0545|consensus
Probab=99.30 E-value=1.7e-11 Score=108.60 Aligned_cols=232 Identities=16% Similarity=0.210 Sum_probs=146.0
Q ss_pred CCceEEEEecCCC-cCCCCCCCeEEEEEEeee---CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEE
Q psy4385 147 GGIRREILEEGAS-FSTPKDGANVEITLKGEC---EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSR 217 (473)
Q Consensus 147 ~~i~k~i~~~g~g-~~~p~~~~~v~~~~~g~~---~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~ 217 (473)
.+|.|+|+..|+| ...-.+|..|++||.... .++++|+ .|.++++|... -.+.||..+.+|.++|.+.
T Consensus 10 ~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkF---kL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 10 EGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKF---KLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred hhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeecccc---ccHHHHHHHHHHhhhhHHH
Confidence 4688999999997 455668999999999877 3568886 38999999987 7899999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCceeeee---eccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHH
Q psy4385 218 LFVQPQHLWSGKGNDKLGVPSNKPATYTIT---MNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKK 294 (473)
Q Consensus 218 ~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~---L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~ 294 (473)
|++..... +.|-.. |.++-..+++.... ....-.+..+...|.-|-......+--+-..-
T Consensus 87 F~~d~~~~----------------vqYPfvsksLRdia~GK~p~e~~-~H~Cg~a~m~~~~glGyedLDeL~knPqpL~F 149 (329)
T KOG0545|consen 87 FWCDTIHT----------------VQYPFVSKSLRDIAQGKDPTEWH-RHCCGLANMFAYHGLGYEDLDELQKNPQPLVF 149 (329)
T ss_pred hhhhhhhe----------------eechhHHHHHHHHhcCCCcchhh-hhhhhhHHHHHhcCCChhhHHHHhhCCCceEe
Confidence 99875431 112111 11111111111100 00111111111222222111111000000111
Q ss_pred HhhhhcCCCC-------CChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh------------------CC
Q psy4385 295 AIPYLDFDGG-------FEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL------------------EP 349 (473)
Q Consensus 295 al~~~~~~~~-------~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------------------~p 349 (473)
.+.++....+ +.-.+.+ .-....++...|+-++++|+|.+|...|..|+.. +.
T Consensus 150 viellqVe~P~qYq~e~Wqlsdde--Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk 227 (329)
T KOG0545|consen 150 VIELLQVEAPSQYQRETWQLSDDE--KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDK 227 (329)
T ss_pred ehhhhhccCchhhccccccCCchH--hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 1111111111 0001111 1233567778999999999999999999998722 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
.+...+.|.++|++..++|-++++.+..+|..+|.|..++...+++....-
T Consensus 228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~W 278 (329)
T KOG0545|consen 228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVW 278 (329)
T ss_pred hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhc
Confidence 344678999999999999999999999999999999999888877765543
No 42
>KOG0376|consensus
Probab=99.30 E-value=2.2e-12 Score=125.17 Aligned_cols=119 Identities=32% Similarity=0.421 Sum_probs=112.4
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.+..+++.++.+|+.+.|+.|+..|.+|| +++|..+..+.|+|.++++.++|..|+.++.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI---------------~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAI---------------ELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHH---------------hcCCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 36678899999999999999999999999 777778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385 348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401 (473)
Q Consensus 348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 401 (473)
+|...|+|+|+|.+++.+++|.+|+.+|+....+.|+++.+...+..|.....+
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877654
No 43
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.29 E-value=3.8e-11 Score=127.91 Aligned_cols=119 Identities=24% Similarity=0.265 Sum_probs=71.9
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
...+..+..+|..++..|++++|+..|++++...+ .....|+++|.++..+|++++|+.++++++
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P---------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al 392 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP---------------RVTQSYIKRASMNLELGDPDKAEEDFDKAL 392 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45567788999999999999999999999995443 334445555555555555555555555555
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
+++|+++.+|+++|.+++.+|+|++|+.+|++++.++|++..++..++.+...+
T Consensus 393 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 393 KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 555555555555555555555555555555555555555544444444444433
No 44
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.29 E-value=2.8e-11 Score=109.19 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=97.3
Q ss_pred CchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH-HHcCC--hhHH
Q psy4385 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL-LKLKQ--AKPA 337 (473)
Q Consensus 261 ~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~kl~~--~~~A 337 (473)
.....+..+..+..+|..+...|+++.|+..|.+|+ .+.|.+..++.++|.++ ...|+ +.+|
T Consensus 65 ~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al---------------~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 65 KIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQAL---------------QLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455667788999999999999999999999999 66667788999999875 67777 5899
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385 338 KDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390 (473)
Q Consensus 338 ~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 390 (473)
+..++++++++|+++.+++.+|.+++.+|+|++|+..|+++++++|.+..-..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999999999999999999999999999999999999999999987654433
No 45
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.28 E-value=8.4e-12 Score=92.41 Aligned_cols=66 Identities=35% Similarity=0.565 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN-EPELAEKDFQKVLQIDP 383 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~P 383 (473)
+..|.++|.+++.+++|++|+.+|+++++++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5689999999999999999999999999999999999999999999999 79999999999999998
No 46
>KOG0546|consensus
Probab=99.27 E-value=8.4e-12 Score=116.53 Aligned_cols=153 Identities=29% Similarity=0.375 Sum_probs=135.3
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCCh---hH-HHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEG---EQ-ETERKKTLTACHLNAAMCLLKLKQAKPAK 338 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~---~~-~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 338 (473)
...+..+...++.|+..|+.++|..|...|.++++++........ ++ ...+......++.|++.|-++++.+..|+
T Consensus 216 ~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~ 295 (372)
T KOG0546|consen 216 DKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGAR 295 (372)
T ss_pred chhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcce
Confidence 445566778899999999999999999999999999875222111 11 23466778889999999999999999999
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385 339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD 415 (473)
Q Consensus 339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 415 (473)
..+..+++.++...+++||++++++.+.++++|++++..+....|++..+...+..+.....++...+++.+.+||+
T Consensus 296 ~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 296 FRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred eccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999884
No 47
>KOG1126|consensus
Probab=99.23 E-value=1.4e-11 Score=123.47 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=90.9
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC----------CChhHHH---------HHHHHHHHHHHHHHHH
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG----------FEGEQET---------ERKKTLTACHLNAAMC 327 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~----------~~~~~~~---------~~~~~~~~~~~nla~~ 327 (473)
...+.|...||.|--+++++.|+.+|++|+.+.+...- ..++.+. .+++.+..+|+-+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 45678999999999999999999999999966553110 1111111 2344455566666666
Q ss_pred HHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385 328 LLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406 (473)
Q Consensus 328 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 406 (473)
|+|+++++.|.-++++|++++|.|.......|..+.++|+.++|+..|++|+.+||.|+-.....+.++..+.++.++-
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666655554444433
No 48
>KOG0547|consensus
Probab=99.22 E-value=1.1e-10 Score=112.79 Aligned_cols=137 Identities=23% Similarity=0.279 Sum_probs=117.7
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
-..+.++...|..+|-.|++-.|...++++| .+++....+|..+|..|+..++..+-..++++|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I---------------~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAI---------------KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHH---------------hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 3458889999999999999999999999999 5566667779999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4385 346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFA 418 (473)
Q Consensus 346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~ 418 (473)
.+||.|+..||.||+.++-+++|++|+.+|++++.++|+|.-++.++.-+..++.+..+.++ .|...-.+++
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~-~Fee~kkkFP 459 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK-TFEEAKKKFP 459 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCC
Confidence 99999999999999999999999999999999999999998888888877776665554443 4444433433
No 49
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.19 E-value=3.5e-10 Score=102.05 Aligned_cols=128 Identities=12% Similarity=0.080 Sum_probs=111.1
Q ss_pred hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy4385 281 KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGN 360 (473)
Q Consensus 281 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~ 360 (473)
..++..+++..+++++ ..+|.+...|.++|.+|+.+|+++.|+..|+++++++|+++.+++.+|.
T Consensus 51 ~~~~~~~~i~~l~~~L---------------~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 51 SQQTPEAQLQALQDKI---------------RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CchhHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4677788888899888 7778889999999999999999999999999999999999999999999
Q ss_pred HH-HhcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchH
Q psy4385 361 AY-LDLNE--PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEK 424 (473)
Q Consensus 361 a~-~~lg~--~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~ 424 (473)
++ ...|+ +++|...|+++++++|++..++..++.+....++..++. ..|+++++.....+++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCccHH
Confidence 85 67787 599999999999999999999999999998877666544 47777777666655443
No 50
>KOG1155|consensus
Probab=99.19 E-value=1.4e-10 Score=111.64 Aligned_cols=119 Identities=20% Similarity=0.263 Sum_probs=104.6
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK 353 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 353 (473)
-.||-|--+++.++|+.+|++|+ .++|....+|.-+|.-|+.+++-..|+..|++|+.++|.+.+
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRAL---------------kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR 399 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRAL---------------KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR 399 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHH---------------hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence 37889999999999999999999 677778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK 407 (473)
Q Consensus 354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 407 (473)
|||.+|++|.-++-..=|+-+|++|+.+-|+++.++..|+.|+.++.+..++.+
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 999999999988888889999999999999999899999999888866655543
No 51
>KOG0624|consensus
Probab=99.18 E-value=1.8e-10 Score=106.86 Aligned_cols=115 Identities=27% Similarity=0.337 Sum_probs=105.1
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
..+..+.++|+.++.+|+|..|+..|..|+ +.+|.+..+++.+|.+|+.+|+-..|+.+++++|+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAv---------------e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAV---------------EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------------cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 457789999999999999999999999999 77888999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHH
Q psy4385 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA---AVQKLTQTK 396 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~---~~~~l~~~~ 396 (473)
+.|+..-|...||.+++++|++++|.++|.++|.-+|++.. ++..|..+.
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ 153 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence 99999999999999999999999999999999999997644 444444443
No 52
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.17 E-value=1.5e-10 Score=126.92 Aligned_cols=116 Identities=11% Similarity=0.103 Sum_probs=90.3
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
+..+.++|..+.+.|++++|+..|.+++ .++|.++.++.++|.++..+|++++|+..++++++++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL---------------~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAAL---------------ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4566677777777777777777777777 5566677788888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
|+++.+++++|.++..+|++++|+..|++|+.++|++..+....+.+....
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 888888888888888888888888888888888888877777666665544
No 53
>KOG1155|consensus
Probab=99.17 E-value=2e-10 Score=110.50 Aligned_cols=149 Identities=18% Similarity=0.215 Sum_probs=131.7
Q ss_pred cccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc
Q psy4385 252 EKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331 (473)
Q Consensus 252 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl 331 (473)
+++...|..+....+....++.-.|..|...++-..|+..|++|+ .++|.+.++|+.+|++|--+
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---------------di~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---------------DINPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---------------hcCchhHHHHhhhhHHHHHh
Confidence 345555566666667788889999999999999999999999999 67778899999999999999
Q ss_pred CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYA 411 (473)
Q Consensus 332 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 411 (473)
+-+.=|+-+|++|+++.|++...|-.+|.||.++++.++|+++|.+|+...-.+..++..|+.+.+++....++. +.|.
T Consensus 412 ~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa-~~ye 490 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA-QYYE 490 (559)
T ss_pred cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH-HHHH
Confidence 999999999999999999999999999999999999999999999999998888999999999999997766554 3555
Q ss_pred HHhhh
Q psy4385 412 NMFDK 416 (473)
Q Consensus 412 ~~f~~ 416 (473)
+....
T Consensus 491 k~v~~ 495 (559)
T KOG1155|consen 491 KYVEV 495 (559)
T ss_pred HHHHH
Confidence 55553
No 54
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.17 E-value=2.8e-10 Score=93.67 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=96.7
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
++.+...|..++..|+|.+|+..|.+++...+. .+....+++++|.++++.++|+.|+..+.+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 69 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY 69 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC
Confidence 346788999999999999999999999954332 12235688999999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385 349 PNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392 (473)
Q Consensus 349 p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 392 (473)
|++ ..+++.+|.++..++++++|+..|.+++...|++..+...+
T Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 70 PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 885 57899999999999999999999999999999998765443
No 55
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.17 E-value=2.7e-10 Score=97.43 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
+.++|.++..+|+|++|+..|.+++.++|.+..+|+.+|.++..+|++++|+..|.+++.++|++..++..++.+...++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred HHHHHHHHHHHHHhh
Q psy4385 401 EQKIKEKQVYANMFD 415 (473)
Q Consensus 401 ~~~~~~k~~~~~~f~ 415 (473)
+..++. ..|.....
T Consensus 107 ~~~eAi-~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAR-EAFQTAIK 120 (144)
T ss_pred CHHHHH-HHHHHHHH
Confidence 666544 34555444
No 56
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.15 E-value=8.7e-10 Score=97.49 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=96.4
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD 342 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 342 (473)
......+..+..+|..+...|+|++|+.+|++++...+.. +....++.++|.++.++|+|++|+..+.
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP------------NDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456678889999999999999999999999999543210 1135689999999999999999999999
Q ss_pred HHhhhCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCC
Q psy4385 343 KAIELEPNNEKAFFRRGNAYLDLNE--------------PELAEKDFQKVLQIDPNN 385 (473)
Q Consensus 343 ~al~~~p~~~ka~~~~g~a~~~lg~--------------~~~A~~~~~~al~l~P~~ 385 (473)
+++.++|.+..+++.+|.+|..+|+ +++|++.+++++.++|++
T Consensus 97 ~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 97 QALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999999999999988 677888888888888887
No 57
>PRK15331 chaperone protein SicA; Provisional
Probab=99.14 E-value=4.7e-10 Score=95.10 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=96.0
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
..+..+..|..+|..|+|.+|...|+-.. ..++.+...++.||.|+..+++|++|+..|..|..+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~---------------~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLC---------------IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45678889999999999999999999888 556677889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385 348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV 389 (473)
Q Consensus 348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~ 389 (473)
+++++...|+.|+||+.+|+.+.|+.+|..++. .|.+..++
T Consensus 101 ~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 101 LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 999999999999999999999999999999998 46655443
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.13 E-value=5.8e-10 Score=117.92 Aligned_cols=140 Identities=6% Similarity=0.041 Sum_probs=126.0
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
+..+..+..+|......|.|++|...+..++ ++.|.+..++.++|.++.+++++++|+..+++++
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---------------~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIH---------------QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---------------hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 3457788999999999999999999999999 7788899999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4385 346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHD 421 (473)
Q Consensus 346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~ 421 (473)
..+|++..+++.+|.++.++|+|++|+..|++++..+|++..++..++.+.+.+++..++. ..|++.+.....-.
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~~~~~~~~ 222 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGLDAIGDGA 222 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhCcch
Confidence 9999999999999999999999999999999999999999999999999998887666544 46666665555443
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=2.4e-10 Score=119.81 Aligned_cols=120 Identities=15% Similarity=-0.004 Sum_probs=99.3
Q ss_pred HhhHHHHhhcchhh---------hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Q psy4385 267 EQGKLLKERGTTYF---------KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPA 337 (473)
Q Consensus 267 ~~a~~~~~~G~~~~---------~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A 337 (473)
..+..+..+|..++ ..+++.+|+..+++|+ +++|.++.++..+|.++..+|++++|
T Consensus 293 ~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al---------------~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 293 NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT---------------ELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH---------------hcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 34455555555443 3456899999999999 66777889999999999999999999
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385 338 KDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401 (473)
Q Consensus 338 ~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 401 (473)
+..|++|++++|+++.+++.+|.++...|++++|+..|+++++++|.+..+...+..+....++
T Consensus 358 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~ 421 (553)
T PRK12370 358 SLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG 421 (553)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999988765554444333433
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=1.7e-09 Score=95.66 Aligned_cols=144 Identities=20% Similarity=0.215 Sum_probs=116.9
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
-..+.+..++|..|+..|++..|...+++|| +.+|....+|.-+|..|.++|+.+.|-+.|++|+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL---------------~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl 96 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKAL---------------EHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL 96 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH
Confidence 3557788899999999999999999999999 6677788999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy4385 346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI--DPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTE 423 (473)
Q Consensus 346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~ 423 (473)
.++|++...+.|.|--++.+|+|++|...|++|+.. .|.-...+.+++.|..+.++... .+..+++.+....+.+..
T Consensus 97 sl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~-A~~~l~raL~~dp~~~~~ 175 (250)
T COG3063 97 SLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQ-AEEYLKRALELDPQFPPA 175 (250)
T ss_pred hcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchh-HHHHHHHHHHhCcCCChH
Confidence 999999999999999999999999999999999873 23445678888888876655443 334556665555554443
Q ss_pred HH
Q psy4385 424 KE 425 (473)
Q Consensus 424 ~~ 425 (473)
..
T Consensus 176 ~l 177 (250)
T COG3063 176 LL 177 (250)
T ss_pred HH
Confidence 33
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=3.1e-10 Score=119.05 Aligned_cols=130 Identities=10% Similarity=-0.006 Sum_probs=113.7
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD 342 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 342 (473)
...+..+..+..+|..+...|++++|+..|++|+ .++|.++.+++++|.++..+|++++|+..++
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al---------------~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQAN---------------LLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344556778889999999999999999999999 6777788999999999999999999999999
Q ss_pred HHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID-PNNKAAVQKLTQTKQKLREQKIKEK 407 (473)
Q Consensus 343 ~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~~~~~~~k 407 (473)
++++++|.++.+++.++.+++..|++++|+..+++++... |+++.++..++.++..+++..++..
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~ 462 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK 462 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999888888888888999999999999999885 7888888889988877766555443
No 62
>KOG0553|consensus
Probab=99.09 E-value=5.1e-10 Score=102.85 Aligned_cols=97 Identities=30% Similarity=0.353 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 397 (473)
+.-+-+-|.-+++.++|.+|+..|++||+++|.|+-.|.+|+.||.++|+|+.|+++++.|+.+||+...++..|+.++.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy4385 398 KLREQKIKEKQVYANMFD 415 (473)
Q Consensus 398 ~~~~~~~~~k~~~~~~f~ 415 (473)
.+.+..++... |++.+.
T Consensus 161 ~~gk~~~A~~a-ykKaLe 177 (304)
T KOG0553|consen 161 ALGKYEEAIEA-YKKALE 177 (304)
T ss_pred ccCcHHHHHHH-HHhhhc
Confidence 99888877765 666553
No 63
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.09 E-value=3.6e-10 Score=82.48 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386 (473)
Q Consensus 322 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~ 386 (473)
+.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999985
No 64
>KOG1125|consensus
Probab=99.08 E-value=2.3e-10 Score=113.06 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=102.4
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
++.+.-+|..|+-.++|++|+.+|+.|| ..+|.+..+|+.||..+..-.+..+||..|++||++.
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL---------------~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq 494 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAAL---------------QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ 494 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHH---------------hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence 3455568999999999999999999999 7788889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHH
Q psy4385 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN----------KAAVQKLTQTKQKL 399 (473)
Q Consensus 349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~----------~~~~~~l~~~~~~~ 399 (473)
|..+.++|++|.+++.+|.|++|...|-.||.+.+.+ ..++..|+.+...+
T Consensus 495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999998762 23566666554443
No 65
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.07 E-value=7.8e-10 Score=121.36 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385 312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391 (473)
Q Consensus 312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 391 (473)
.++|. ..++.++|.++.++|++++|+..+.+++.++|+++.+++++|.++...|++++|+..|.+|++++|++..++..
T Consensus 604 ~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 604 NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 44564 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4385 392 LTQTKQKLREQKIKEKQVYANMFDKF 417 (473)
Q Consensus 392 l~~~~~~~~~~~~~~k~~~~~~f~~~ 417 (473)
++.+...+++..++.. .|++.+...
T Consensus 683 LA~al~~lGd~~eA~~-~l~~Al~l~ 707 (987)
T PRK09782 683 LAYVNQRLDDMAATQH-YARLVIDDI 707 (987)
T ss_pred HHHHHHHCCCHHHHHH-HHHHHHhcC
Confidence 9999988877665554 555555433
No 66
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.07 E-value=5.1e-10 Score=86.31 Aligned_cols=83 Identities=24% Similarity=0.318 Sum_probs=71.4
Q ss_pred cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385 282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA 361 (473)
Q Consensus 282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 361 (473)
+++|+.|+..|++++...+. ++ ....++++|.|++++|+|++|+..+++ +..++.++..++.+|.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 68999999999999943331 11 566888899999999999999999999 99999999999999999
Q ss_pred HHhcCCHHHHHHHHHHH
Q psy4385 362 YLDLNEPELAEKDFQKV 378 (473)
Q Consensus 362 ~~~lg~~~~A~~~~~~a 378 (473)
+..+|+|++|+..|++|
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=1e-09 Score=100.89 Aligned_cols=122 Identities=20% Similarity=0.182 Sum_probs=85.4
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.+..+..+|..++..|++++|+..|++++.. .+....++.++|.++..+|++++|+..+.+++..
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTL---------------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3456666777777777777777777777743 3334556777777777777777777777777764
Q ss_pred C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385 348 E--PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKI 404 (473)
Q Consensus 348 ~--p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 404 (473)
. +.....++++|.++...|++++|...|.+++..+|++..++..++.+....++..+
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 129 PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 3 44556777777777777777777777777777777777777777777665544443
No 68
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.05 E-value=3.4e-09 Score=89.55 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385 312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391 (473)
Q Consensus 312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 391 (473)
..+|.+...+..+|.++++.+++++|+..+++++.++|.++.+++++|.++..+|++++|+..|.+++.++|.+...+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 55667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385 392 LTQTKQKLREQKIKEKQVYANMFDK 416 (473)
Q Consensus 392 l~~~~~~~~~~~~~~k~~~~~~f~~ 416 (473)
++.+....++..++.+ .+++.+..
T Consensus 91 la~~~~~~g~~~~A~~-~~~~al~~ 114 (135)
T TIGR02552 91 AAECLLALGEPESALK-ALDLAIEI 114 (135)
T ss_pred HHHHHHHcCCHHHHHH-HHHHHHHh
Confidence 9999888765554433 45555443
No 69
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.04 E-value=4e-10 Score=83.29 Aligned_cols=67 Identities=27% Similarity=0.433 Sum_probs=63.2
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKAIE 346 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~ 346 (473)
.+..+..+|..++..++|.+|+..|++++ .++|.++.+++++|.|+.+++ ++.+|+.+++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai---------------~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI---------------ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH---------------HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999 777788999999999999999 79999999999999
Q ss_pred hCC
Q psy4385 347 LEP 349 (473)
Q Consensus 347 ~~p 349 (473)
++|
T Consensus 67 l~P 69 (69)
T PF13414_consen 67 LDP 69 (69)
T ss_dssp HST
T ss_pred cCc
Confidence 998
No 70
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.03 E-value=1.1e-09 Score=85.01 Aligned_cols=99 Identities=32% Similarity=0.503 Sum_probs=84.7
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 350 (473)
.+..+|..++..|++.+|+..+.++++.. +....++.++|.++...+++++|+..+++++.+.|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD---------------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 35677888888999999999999998443 333467889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384 (473)
Q Consensus 351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~ 384 (473)
+..+++.+|.++...|++++|...+.+++.++|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 8889999999999999999999999999888774
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.02 E-value=4.9e-09 Score=96.41 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=110.4
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.+..+..+|..++..|+|++|+..|++++ ...|....++..+|.++..+|++++|+..+++++++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l---------------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKAL---------------EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788889999999999999999999999 445556789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385 348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID--PNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD 415 (473)
Q Consensus 348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~--P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 415 (473)
+|.+..+++++|.++...|++++|+..|.+++... |....++..++.+....++..+.. ..+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 163 (234)
T TIGR02521 95 NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE-KYLTRALQ 163 (234)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence 99999999999999999999999999999999864 445566777777776665544433 34444443
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=9.6e-09 Score=95.69 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=99.4
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
..+..+...|..++..|+|..|+..|++++...+. .+....+++++|.++++++++++|+..++++++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF------------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34678899999999999999999999999955443 123446889999999999999999999999999
Q ss_pred hCCCCHH---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385 347 LEPNNEK---AFFRRGNAYLDL--------NEPELAEKDFQKVLQIDPNNKAAVQKLT 393 (473)
Q Consensus 347 ~~p~~~k---a~~~~g~a~~~l--------g~~~~A~~~~~~al~l~P~~~~~~~~l~ 393 (473)
..|+++. ++|.+|.++... +++++|+..|++++..+|++..+...+.
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 9998886 799999999987 8899999999999999999976654443
No 73
>KOG0624|consensus
Probab=99.01 E-value=1.8e-09 Score=100.36 Aligned_cols=124 Identities=16% Similarity=0.217 Sum_probs=103.2
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
................++|.+++..+++.++.-+.. -+.....+..++.|+..-+++.+||+.|+++|.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~-----------~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE-----------TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc-----------cceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 334444456667788899999999999998654431 223344566788999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 401 (473)
++|+++.+|..|+.||+.-..|++|+.+|++|++++|+|..++..+..+.+..++
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkq 390 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQ 390 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888877655433
No 74
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.01 E-value=7.8e-09 Score=87.39 Aligned_cols=104 Identities=12% Similarity=0.004 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394 (473)
Q Consensus 315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 394 (473)
+......+.+|..++..|+++.|...|+.++.+||.+...||++|.|+..+|+|++|+..|.+|+.++|+++.....++.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC
Q psy4385 395 TKQKLREQKIKEKQVYANMFDKFAK 419 (473)
Q Consensus 395 ~~~~~~~~~~~~k~~~~~~f~~~~~ 419 (473)
|...+++... .++.|+........
T Consensus 112 c~L~lG~~~~-A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 112 CYLACDNVCY-AIKALKAVVRICGE 135 (157)
T ss_pred HHHHcCCHHH-HHHHHHHHHHHhcc
Confidence 9988866554 44566666666643
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=6e-09 Score=100.48 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=98.1
Q ss_pred cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385 282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA 361 (473)
Q Consensus 282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 361 (473)
.++.+.++..+.++|...+. ..+..+..|+++|.++..+|++..|+..|+++++++|+++.+|+++|.+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~-----------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 107 (296)
T PRK11189 39 TLQQEVILARLNQILASRDL-----------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY 107 (296)
T ss_pred chHHHHHHHHHHHHHccccC-----------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35678899999998843221 1224577899999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385 362 YLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406 (473)
Q Consensus 362 ~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 406 (473)
+..+|++++|+..|.++++++|++..++..++.+....++..++.
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999887666555443
No 76
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.00 E-value=1.9e-09 Score=115.14 Aligned_cols=133 Identities=11% Similarity=0.103 Sum_probs=95.3
Q ss_pred hhHHHHhhcchhhhcccHHH----HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385 268 QGKLLKERGTTYFKQDKFEL----ACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK 343 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 343 (473)
.+..+..+|..++..|++.+ |+..|++++ .++|....++.++|.++.++|++++|+..+++
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al---------------~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL---------------QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH---------------hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555666777777777764 667777777 55566677888888888888888888888888
Q ss_pred HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385 344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK 416 (473)
Q Consensus 344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~ 416 (473)
+++++|+++.+++.+|.+|..+|++++|+..|++++..+|++..+...++.+....++..++ .+.|++....
T Consensus 310 al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA-~~~l~~al~~ 381 (656)
T PRK15174 310 SLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA-ESVFEHYIQA 381 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH-HHHHHHHHHh
Confidence 88888888888888888888888888888888888888888766555555555544433332 2344444433
No 77
>PLN02789 farnesyltranstransferase
Probab=99.00 E-value=4.3e-09 Score=101.69 Aligned_cols=123 Identities=14% Similarity=-0.007 Sum_probs=109.0
Q ss_pred chhHHHhhHHHHhhcchhhhcc-cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCCh--hHHH
Q psy4385 262 SDEKLEQGKLLKERGTTYFKQD-KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA--KPAK 338 (473)
Q Consensus 262 ~~~~~~~a~~~~~~G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~--~~A~ 338 (473)
....+....++..+|..+...+ ++.+|+..+.+++ ..+|.+..+|.+++.++.+++.+ +.++
T Consensus 64 I~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i---------------~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 64 IRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA---------------EDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred HHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH---------------HHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 3445566778888899998888 6899999999999 67777888999999999999874 7889
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
..++++|+++|.|..||+.|+.++..+++|++|++++.++++++|.|..++..+..+...+
T Consensus 129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 129 EFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999998888776544
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=1.1e-09 Score=96.96 Aligned_cols=131 Identities=18% Similarity=0.145 Sum_probs=107.3
Q ss_pred cccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Q psy4385 258 WQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPA 337 (473)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A 337 (473)
++...+..+....++.-++..|.+.|+.+.|-+.|++|+ .++|.+..+++|.|..++.+|+|++|
T Consensus 58 lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---------------sl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 58 LEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---------------SLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---------------hcCCCccchhhhhhHHHHhCCChHHH
Confidence 333445555667788888889999999999999999999 66777788999999999999999999
Q ss_pred HHHHHHHhhhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385 338 KDQCDKAIELE--PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK 403 (473)
Q Consensus 338 ~~~~~~al~~~--p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 403 (473)
...+++|+..- +.-+..|-|+|.|-++.|+++.|..+|+++|+++|+++.....+.......+++-
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 99999998752 4566888999999999999999999999999999999888777777765554443
No 79
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.98 E-value=9.5e-09 Score=90.47 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=91.2
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
...+..+...|..++..|+|++|+..|.+++.+.+. ....+.+++|+|.++..+|++++|+..|.+++
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346788899999999999999999999999965331 11235689999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhcCCCCH
Q psy4385 346 ELEPNNEKAFFRRGNAYL-------DLNEPE-------LAEKDFQKVLQIDPNNK 386 (473)
Q Consensus 346 ~~~p~~~ka~~~~g~a~~-------~lg~~~-------~A~~~~~~al~l~P~~~ 386 (473)
.++|.+..+++++|.++. .+|+++ +|+..|++++..+|.+.
T Consensus 100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999999999998 777876 55566667788888764
No 80
>KOG1125|consensus
Probab=98.97 E-value=4.4e-09 Score=104.18 Aligned_cols=155 Identities=13% Similarity=0.134 Sum_probs=129.6
Q ss_pred ccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC--------------------------------
Q psy4385 257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG-------------------------------- 304 (473)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~-------------------------------- 304 (473)
.++.+..+.+..+++|.-+|..+...++=..|+..+++++++.+....
T Consensus 307 afEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y 386 (579)
T KOG1125|consen 307 AFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY 386 (579)
T ss_pred HHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence 334466777888999999999999999999999999999887755100
Q ss_pred ------------------CChh----------HHHHHHH--HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385 305 ------------------FEGE----------QETERKK--TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA 354 (473)
Q Consensus 305 ------------------~~~~----------~~~~~~~--~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka 354 (473)
.+.. +.....+ ..+.++.-||..|.-.++|++|+++|+.||..+|++...
T Consensus 387 ~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l 466 (579)
T KOG1125|consen 387 VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL 466 (579)
T ss_pred hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH
Confidence 0000 1112233 467788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 355 FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYA 411 (473)
Q Consensus 355 ~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 411 (473)
|.|+|.++..-.+.++|+..|.+||+|.|....++++|+.....++.++++.+....
T Consensus 467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 467 WNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888775444
No 81
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.95 E-value=6.2e-09 Score=94.01 Aligned_cols=123 Identities=20% Similarity=0.129 Sum_probs=111.4
Q ss_pred HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP 349 (473)
Q Consensus 270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 349 (473)
..+...|..++..|+|..|+..+.++. .+.|.+..+|+-+|.+|.++|+++.|...|.+++++.|
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~---------------~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAA---------------RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHh---------------ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 355558999999999999999999999 56667789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK 407 (473)
Q Consensus 350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 407 (473)
+++.++.|+|..|+-.|+++.|...+..+...-+.+..+..+|..+....+...+.++
T Consensus 166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 9999999999999999999999999999999888899999999998877766665554
No 82
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.94 E-value=6.7e-09 Score=110.95 Aligned_cols=125 Identities=12% Similarity=0.134 Sum_probs=107.0
Q ss_pred hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH----HHHHHHHHhhhCCC
Q psy4385 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP----AKDQCDKAIELEPN 350 (473)
Q Consensus 275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~----A~~~~~~al~~~p~ 350 (473)
.|..++..|++++|+..|.+++ ...|....+++++|.++..+|++++ |+..|+++++++|+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al---------------~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESAL---------------ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH---------------hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 4566777888888888888888 4456678899999999999999996 89999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD 415 (473)
Q Consensus 351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 415 (473)
++.++..+|.++..+|++++|+..|++++.++|++..++..++.+....++..++.. .|.++..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~-~l~~al~ 346 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD-EFVQLAR 346 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999887766654433 4454443
No 83
>KOG1173|consensus
Probab=98.92 E-value=2.9e-09 Score=105.06 Aligned_cols=124 Identities=22% Similarity=0.248 Sum_probs=106.1
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
...-.+.++|...|..+.|.+|..+|+.++...+.... + .+.....+.|+|.++.+++.|.+||..++++|.
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-------e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-------E-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-------c-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34456788999999999999999999999944432111 0 114567899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 398 (473)
+.|.++.++-..|.+|..+|+++.|+..|.+||-++|+|.-+...|+.+.+.
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998888888876654
No 84
>KOG4555|consensus
Probab=98.92 E-value=4.7e-08 Score=78.62 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=95.9
Q ss_pred HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344 (473)
Q Consensus 265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 344 (473)
-++....+--.|..+...|+.+.|+..|.+++ .+-|.++++|+|+|+++.-.|+.++|+++.++|
T Consensus 39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal---------------~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 39 AIKASRELELKAIALAEAGDLDGALELFGQAL---------------CLAPERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------------HhcccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 44556677778999999999999999999999 556668999999999999999999999999999
Q ss_pred hhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385 345 IELEPNNE----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393 (473)
Q Consensus 345 l~~~p~~~----ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 393 (473)
+++..... .+|..||..|..+|+-+.|..+|..|.++... -++.+|-
T Consensus 104 leLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~--FAr~QLV 154 (175)
T KOG4555|consen 104 LELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK--FAREQLV 154 (175)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH--HHHHHHH
Confidence 99965433 67889999999999999999999999998643 3444443
No 85
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.90 E-value=4.3e-09 Score=100.83 Aligned_cols=133 Identities=15% Similarity=0.230 Sum_probs=102.9
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
..+..+...|..+.+.|++++|+..|++|+ .++|.+..+...++.+++..|+++++...+.....
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al---------------~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKAL---------------ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH---------------HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 345677889999999999999999999999 77888899999999999999999999999999888
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD 415 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 415 (473)
..|.++..+..+|.+|..+|++++|+..|++++..+|+|+.+...++.+....++..++.. .+++.+.
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~-~~~~~~~ 276 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR-LRRQALR 276 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 8899999999999999999999999999999999999999999999999988776665443 4444443
No 86
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.89 E-value=8.3e-09 Score=77.08 Aligned_cols=70 Identities=20% Similarity=0.385 Sum_probs=64.7
Q ss_pred HHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394 (473)
Q Consensus 325 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 394 (473)
...|++.++|+.|+.++++++.++|+++.+++.+|.++..+|+|.+|+.+|+++++.+|++..+......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999999887655443
No 87
>KOG1308|consensus
Probab=98.88 E-value=1.2e-09 Score=101.86 Aligned_cols=124 Identities=26% Similarity=0.315 Sum_probs=109.7
Q ss_pred CchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy4385 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQ 340 (473)
Q Consensus 261 ~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 340 (473)
..++.++.+...+-.+..++..|.++.|+..|..|| .++|..+.+|-++|.++++++.+..|+.+
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai---------------~lnp~~a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAI---------------ELNPPLAILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhccccccc---------------ccCCchhhhcccccceeeeccCCchhhhh
Confidence 457778888899999999999999999999999999 77778899999999999999999999999
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 341 CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 341 ~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
|..|+.++|+..+.|-.+|.++..+|+|++|..+|..|++++-+ ..+-..|..+....+
T Consensus 171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ 229 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAG 229 (377)
T ss_pred hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999843 444555555544443
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.87 E-value=1.1e-08 Score=108.41 Aligned_cols=133 Identities=10% Similarity=0.013 Sum_probs=114.8
Q ss_pred ccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy4385 249 NNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL 328 (473)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~ 328 (473)
..++.+...|.-..+..++.+.++.+.+..+++.+++++|...+++++ ...|.++..++++|.|+
T Consensus 100 g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---------------~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 100 HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---------------SGGSSSAREILLEAKSW 164 (694)
T ss_pred CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---------------hcCCCCHHHHHHHHHHH
Confidence 444555556666667777889999999999999999999999999999 66777899999999999
Q ss_pred HHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHH
Q psy4385 329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA-VQKLTQTK 396 (473)
Q Consensus 329 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~-~~~l~~~~ 396 (473)
.++|+|++|+..|++++..+|++..++..+|.++..+|+.++|...|++|+.....-... ...+..+.
T Consensus 165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLN 233 (694)
T ss_pred HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987655443 33444443
No 89
>KOG0550|consensus
Probab=98.86 E-value=3.5e-08 Score=94.13 Aligned_cols=146 Identities=15% Similarity=0.159 Sum_probs=120.0
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
..+.+++-+|.+++...+.+.|+.+|++++++.+.-. ..-.....+.....+.+.|.-.++.|+|..|.+.|..+|.
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~---~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQ---KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhh---hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 4577888999999999999999999999998765411 1112234566677888999999999999999999999999
Q ss_pred hCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385 347 LEPNN----EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK 416 (473)
Q Consensus 347 ~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~ 416 (473)
+||+| ++.|++||.++..+|+..+|+.++..|+.|||.--.++...+.|...+.+..+.-+ -|.++.+.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~-d~~~a~q~ 350 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE-DYEKAMQL 350 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 99985 47899999999999999999999999999999988888888888888766655443 34444443
No 90
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.84 E-value=2.2e-08 Score=114.05 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=114.9
Q ss_pred cccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy4385 250 NFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329 (473)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 329 (473)
+++.+...+.......+..+..+..+|..+++.|++++|+..|+++++..+..... ......+......+..++|.+++
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~-~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR-DKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch-hHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444444455567888999999999999999999999999776542211 00011122223344567799999
Q ss_pred HcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385 330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397 (473)
Q Consensus 330 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 397 (473)
+.|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..+..+..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887777653
No 91
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.84 E-value=1.8e-08 Score=101.62 Aligned_cols=99 Identities=22% Similarity=0.431 Sum_probs=84.0
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385 45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD 124 (473)
Q Consensus 45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~ 124 (473)
.++.||.|+++|+++. ||..|+++. ..++.|.+|.+.+++||+++|.||++|+++.|.+++...|+..+. ++
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~g 217 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----AG 217 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----CC
Confidence 4788999999999987 899988863 468999999999999999999999999999999998888887654 68
Q ss_pred CceEEEEEEEeeeeccCCCCCCCCceEE
Q psy4385 125 STLVFEVEMISWEAEDISPTHDGGIRRE 152 (473)
Q Consensus 125 ~~l~~~v~l~~~~~~~~~~~~d~~i~k~ 152 (473)
.++.|.|+|.++....++ .-+..++++
T Consensus 218 k~~~f~v~i~~I~~~~~p-eldDefak~ 244 (408)
T TIGR00115 218 KEATFKVTVKEVKEKELP-ELDDEFAKE 244 (408)
T ss_pred CeEEEEEEEEEeccCCCC-CCCHHHHHh
Confidence 999999999999876554 344555554
No 92
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=8.7e-08 Score=92.68 Aligned_cols=121 Identities=16% Similarity=0.107 Sum_probs=106.2
Q ss_pred hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHhhhCCCCHHHHH
Q psy4385 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKAIELEPNNEKAFF 356 (473)
Q Consensus 278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~p~~~ka~~ 356 (473)
.+...+++++|+..+.++| .++|.+..+|.+++.++.+++ .+++|+..++++++.+|++..+|+
T Consensus 46 ~l~~~e~serAL~lt~~aI---------------~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~ 110 (320)
T PLN02789 46 VYASDERSPRALDLTADVI---------------RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH 110 (320)
T ss_pred HHHcCCCCHHHHHHHHHHH---------------HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH
Confidence 3566788999999999999 888899999999999999999 689999999999999999999999
Q ss_pred HHHHHHHhcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385 357 RRGNAYLDLNEP--ELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF 414 (473)
Q Consensus 357 ~~g~a~~~lg~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f 414 (473)
+|+.++..+++. ++++..+.++++++|.|-.++...+.+...++...+ +-+.+.+++
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I 169 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLL 169 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHH
Confidence 999999999874 788999999999999999999999998888866543 444445444
No 93
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.83 E-value=1e-08 Score=75.42 Aligned_cols=67 Identities=30% Similarity=0.389 Sum_probs=61.4
Q ss_pred HHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385 328 LLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394 (473)
Q Consensus 328 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 394 (473)
+++.|+|++|+..+++++..+|++..+++.+|.||...|++++|...+.+++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999998887766654
No 94
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.83 E-value=1.5e-08 Score=112.38 Aligned_cols=112 Identities=15% Similarity=0.106 Sum_probs=55.2
Q ss_pred HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
+..++..+...|++.+|+..+++++.. .|.+..+++++|.++.++|++++|+..|+++++.+|++
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKT---------------HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 344555555556666666666555522 22234444455555555555555555555555555554
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
+.++.++|.++...|+ .+|+..+++++.+.|++..+...++.+...+
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 4444444444444444 4444444444444444444444444444333
No 95
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=89.52 Aligned_cols=130 Identities=22% Similarity=0.301 Sum_probs=114.6
Q ss_pred CceeeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHH
Q psy4385 241 PATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC 320 (473)
Q Consensus 241 ~~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
.+.-++-+..+.+....-.++.+++ |..+.++|+.|-..|-+..|...|.+++ .++|..+.+
T Consensus 40 ~lqqEV~iarlsqlL~~~~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaL---------------ai~P~m~~v 101 (297)
T COG4785 40 TLQQEVILARMSQILASRALTDEER---AQLLFERGVLYDSLGLRALARNDFSQAL---------------AIRPDMPEV 101 (297)
T ss_pred cHHHHHHHHHHHHHHHhccCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhh---------------hcCCCcHHH
Confidence 3555555555555555556666654 7899999999999999999999999999 777888999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388 (473)
Q Consensus 321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~ 388 (473)
++.+|.-+...|+|+.|.+.++.++++||.+-.|+.|||.+++--|+|.-|.+++.+..+-||+++--
T Consensus 102 fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 102 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999743
No 96
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.82 E-value=1.7e-08 Score=110.01 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=106.6
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
..+..+..+|..+...|++.+|+..|++++ .+.|.+..++.++|.++...+++++|+..++++++
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al---------------~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKAL---------------SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345568889999999999999999999999 66667788899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 398 (473)
.+|+++. ++.+|.++...|++++|+..|+++++++|++..++..++.+...
T Consensus 112 ~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 112 GAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred hCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999999998888777654
No 97
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.81 E-value=6.1e-08 Score=90.96 Aligned_cols=112 Identities=12% Similarity=0.077 Sum_probs=94.3
Q ss_pred HHHHhhcchh-hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 270 KLLKERGTTY-FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 270 ~~~~~~G~~~-~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
...+..+..+ ++.|+|.+|+..|+..+...+.. +....+++.+|.+|+..|+|+.|+..|.+++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556666666 66799999999999999665542 1235688999999999999999999999999988
Q ss_pred CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385 349 PNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393 (473)
Q Consensus 349 p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 393 (473)
|++ +.+++.+|.++..+|++++|+..|+++++..|++..+.....
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~ 258 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQK 258 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 874 688999999999999999999999999999999886654433
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.79 E-value=5.6e-08 Score=90.52 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=105.1
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc--------CChhHHHHH
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL--------KQAKPAKDQ 340 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl--------~~~~~A~~~ 340 (473)
...+..+|..++..+++++|+..|+++++..+... ....+++++|.|+.++ +++++|+..
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~ 137 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEA 137 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 35678899999999999999999999996655321 1234688999999887 889999999
Q ss_pred HHHHhhhCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHH
Q psy4385 341 CDKAIELEPNNEKAF-----------------FRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAVQKLTQTKQKLR 400 (473)
Q Consensus 341 ~~~al~~~p~~~ka~-----------------~~~g~a~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l~~~~~~~~ 400 (473)
+++++..+|++..++ +.+|.+|+..|++.+|+..|.+++...|++ ..++..++.+...++
T Consensus 138 ~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 138 FQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 999999999986442 467889999999999999999999998765 578889999988887
Q ss_pred HHHHHHH
Q psy4385 401 EQKIKEK 407 (473)
Q Consensus 401 ~~~~~~k 407 (473)
+..+...
T Consensus 218 ~~~~A~~ 224 (235)
T TIGR03302 218 LKDLAQD 224 (235)
T ss_pred CHHHHHH
Confidence 7665543
No 99
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.79 E-value=4.7e-08 Score=98.18 Aligned_cols=120 Identities=17% Similarity=0.129 Sum_probs=70.6
Q ss_pred HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP 349 (473)
Q Consensus 270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 349 (473)
..+..++..+.+.|+|++|+..|.+++...+.. ........+.++|.++++.+++++|+..++++++.+|
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 211 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS----------LRVEIAHFYCELAQQALARGDLDAARALLKKALAADP 211 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc----------chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence 344455555666666666666666555332210 0001233456667677777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHH
Q psy4385 350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK-AAVQKLTQTKQKL 399 (473)
Q Consensus 350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~ 399 (473)
++..+++.+|.+|...|++++|+..|++++..+|.+. .++..+..+....
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 7777777777777777777777777777776666552 3344444444433
No 100
>KOG1129|consensus
Probab=98.79 E-value=2.9e-09 Score=98.36 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=100.2
Q ss_pred HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC--
Q psy4385 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP-- 349 (473)
Q Consensus 272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p-- 349 (473)
.--.|..||..++.+.|+++|++.+ ++--.++.+++|+|.|++-.++|+-++..+.+|+..-.
T Consensus 327 iAcia~~yfY~~~PE~AlryYRRiL---------------qmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~ 391 (478)
T KOG1129|consen 327 IACIAVGYFYDNNPEMALRYYRRIL---------------QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP 391 (478)
T ss_pred eeeeeeccccCCChHHHHHHHHHHH---------------HhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc
Confidence 3346777888888888888888888 55556788999999999999999999999999997743
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385 350 -NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ 402 (473)
Q Consensus 350 -~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 402 (473)
.-...|||+|.+....|++..|.++|+.||.-||++.+++.+|+.+..+.++-
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 34688999999999999999999999999999999999999999987665443
No 101
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.77 E-value=6.7e-08 Score=110.16 Aligned_cols=127 Identities=18% Similarity=0.221 Sum_probs=108.5
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK 353 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 353 (473)
..|..++..|++++|+..|++++ ..+|.+..++.++|.+++++|++++|+.+++++++++|++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL---------------~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAV---------------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 45888999999999999999999 556667889999999999999999999999999999998753
Q ss_pred H--------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385 354 A--------------FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK 416 (473)
Q Consensus 354 a--------------~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~ 416 (473)
. +..+|.++...|++++|+..|++++.++|++..++..|+.+....++..++. +.|++++..
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~-~~y~~aL~~ 414 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAE-RYYQQALRM 414 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHh
Confidence 1 2356889999999999999999999999999999999999988776665544 355655543
No 102
>KOG1840|consensus
Probab=98.76 E-value=3.4e-08 Score=99.99 Aligned_cols=147 Identities=22% Similarity=0.262 Sum_probs=120.7
Q ss_pred HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344 (473)
Q Consensus 265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 344 (473)
.+..+..+...|..|...++|.+|+..|++|+.+...... ..+|..+..+.|||..|.+.|+|.+|..+|++|
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-------~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-------EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 4566777778999999999999999999999987764332 335677889999999999999999999999999
Q ss_pred hhhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 345 IELE--------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID-----PNN---KAAVQKLTQTKQKLREQKIKEKQ 408 (473)
Q Consensus 345 l~~~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~-----P~~---~~~~~~l~~~~~~~~~~~~~~k~ 408 (473)
+++- |.-...+.+.+.++..++++++|+..|++++++- ++| ..++.+|+.++..++++.+++.
T Consensus 310 l~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~- 388 (508)
T KOG1840|consen 310 LEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE- 388 (508)
T ss_pred HHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH-
Confidence 9773 3344678899999999999999999999998873 333 4568899999999988887764
Q ss_pred HHHHHhhhhcC
Q psy4385 409 VYANMFDKFAK 419 (473)
Q Consensus 409 ~~~~~f~~~~~ 419 (473)
+|+++..+...
T Consensus 389 ~~k~ai~~~~~ 399 (508)
T KOG1840|consen 389 LYKKAIQILRE 399 (508)
T ss_pred HHHHHHHHHHh
Confidence 67777766643
No 103
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.76 E-value=2.1e-08 Score=86.13 Aligned_cols=66 Identities=21% Similarity=0.354 Sum_probs=60.2
Q ss_pred CCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCC
Q psy4385 162 TPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKG 230 (473)
Q Consensus 162 ~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g 230 (473)
.+..++.|++||++++ +|++|++ .|..|.+|.+. +++||+.||..|+.|++..|.|||..+||...
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~---vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGS---LSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCC---ccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 4678899999999999 8999996 37899999887 99999999999999999999999999999753
No 104
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.76 E-value=9.9e-08 Score=105.74 Aligned_cols=124 Identities=25% Similarity=0.350 Sum_probs=102.2
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
...+..+...|..++..|+|++|+..|++++.. .|....+++.+|.+++..|+|++|+..+++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 186 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAI---------------DPRSLYAKLGLAQLALAENRFDEARALIDEVL 186 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445678888999999999999999999999944 44456678888888888888888888888888
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385 346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKI 404 (473)
Q Consensus 346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 404 (473)
..+|.+..+++.+|.++...|++++|+..|++++.++|++..++..+..+....++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~ 245 (899)
T TIGR02917 187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE 245 (899)
T ss_pred HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888888888888888888888888888887777777665554443
No 105
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.76 E-value=1.1e-07 Score=79.17 Aligned_cols=110 Identities=21% Similarity=0.329 Sum_probs=95.2
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
+..++..|...++.|+|..|+..++....-.+.. +....+.+.++.+|++.++|..|+..+++-++++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g------------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG------------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 5578889999999999999999999887655542 2345688899999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHhcCCCCHHHHH
Q psy4385 349 PNNE---KAFFRRGNAYLDLNE---------------PELAEKDFQKVLQIDPNNKAAVQ 390 (473)
Q Consensus 349 p~~~---ka~~~~g~a~~~lg~---------------~~~A~~~~~~al~l~P~~~~~~~ 390 (473)
|.++ -|+|.+|.+++.+.. ...|..+|++.++.-|++.-+..
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 9876 589999999999987 88999999999999999876543
No 106
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.76 E-value=1.5e-07 Score=94.60 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=105.3
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
+..+..+|..++..+++++|+..|+++++ ..|....+++.+|.++.+.|++++|+..+++++..+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~---------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALA---------------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHh---------------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34466788899999999999999999994 444556788999999999999999999999999999
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385 349 PNNE-KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK 416 (473)
Q Consensus 349 p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~ 416 (473)
|.+. .++..++.+|...|++++|+..++++++.+|++..+ ..+..+..+.++..+ ....+.+++..
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~-A~~~l~~~l~~ 311 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEA-AQALLREQLRR 311 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHH-HHHHHHHHHHh
Confidence 8874 567889999999999999999999999999987554 666666665544443 33455555443
No 107
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.74 E-value=9.2e-08 Score=94.51 Aligned_cols=94 Identities=22% Similarity=0.212 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
+...|..++..++|..|+..|++||+++|+++.+|+++|.+|..+|+|++|+.++++|+.++|++..++..++.++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHhh
Q psy4385 401 EQKIKEKQVYANMFD 415 (473)
Q Consensus 401 ~~~~~~k~~~~~~f~ 415 (473)
++.++.. .|+++..
T Consensus 85 ~~~eA~~-~~~~al~ 98 (356)
T PLN03088 85 EYQTAKA-ALEKGAS 98 (356)
T ss_pred CHHHHHH-HHHHHHH
Confidence 7665544 4444443
No 108
>PRK01490 tig trigger factor; Provisional
Probab=98.74 E-value=6.1e-08 Score=98.67 Aligned_cols=99 Identities=20% Similarity=0.433 Sum_probs=82.4
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385 45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD 124 (473)
Q Consensus 45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~ 124 (473)
.++.||.|+++|+++. ||+.|+++. ..++.|.+|.+.+++||+++|.||++|+++.|.+++...|+.... ++
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag 228 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG 228 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence 4789999999999998 898888763 458999999999999999999999999999999988888876543 67
Q ss_pred CceEEEEEEEeeeeccCCCCCCCCceEE
Q psy4385 125 STLVFEVEMISWEAEDISPTHDGGIRRE 152 (473)
Q Consensus 125 ~~l~~~v~l~~~~~~~~~~~~d~~i~k~ 152 (473)
.++.|.|+|.++....++ +-+..+.+.
T Consensus 229 k~~~f~v~v~~V~~~~~p-el~Defak~ 255 (435)
T PRK01490 229 KEATFKVTVKEVKEKELP-ELDDEFAKK 255 (435)
T ss_pred CeEEEEEEEEEeccCCCC-CCCHHHHHh
Confidence 899999999999876554 334444443
No 109
>KOG2076|consensus
Probab=98.72 E-value=2.4e-07 Score=96.27 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=71.9
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
+..+...+|.+|.+|++++|...+.++|+. +|.+..+|.-||.||-.+|+.++|+...-.|-.++
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq---------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~ 203 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ---------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN 203 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 667888999999999999999999999954 44445555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
|.+..-|.+++....++|.++.|+-+|.+|++.+|.|.........++++++
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G 255 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG 255 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC
Confidence 5555555555555555555555555555555555555444444444444443
No 110
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.72 E-value=8.3e-08 Score=82.24 Aligned_cols=99 Identities=29% Similarity=0.349 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC----------hhHHHHHHHHHhhhCCCCHHH
Q psy4385 285 FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ----------AKPAKDQCDKAIELEPNNEKA 354 (473)
Q Consensus 285 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~----------~~~A~~~~~~al~~~p~~~ka 354 (473)
|+.|.+.|+.+. ..+|.++..++|-|.+++.+.+ +++|+.-+++||.++|+...|
T Consensus 7 FE~ark~aea~y---------------~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAY---------------AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHH---------------HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHH---------------HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 567778888777 7788889999999998887744 567899999999999999999
Q ss_pred HHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385 355 FFRRGNAYLDLNE-----------PELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398 (473)
Q Consensus 355 ~~~~g~a~~~lg~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 398 (473)
++++|.||..++. |++|..+|++|...+|+|...+..|..+.+.
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 9999999988765 7889999999999999999888888777543
No 111
>KOG2003|consensus
Probab=98.71 E-value=8.8e-08 Score=92.16 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=105.8
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.+.++.+.||..|..|+|++|...|++|+ ..+.....+++|+|..+-++|+.++|+++|-+.-.+
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal---------------~ndasc~ealfniglt~e~~~~ldeald~f~klh~i 553 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEAL---------------NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI 553 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHH---------------cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH
Confidence 35567789999999999999999999999 444556788999999999999999999999887776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4385 348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK 405 (473)
Q Consensus 348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 405 (473)
--+++..++.++.+|..+.+...|++.|.++..+-|+++.++..|+.++.+.+...++
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence 6788999999999999999999999999999999999999998888888766554443
No 112
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.70 E-value=2.1e-08 Score=73.01 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=57.4
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE 352 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ 352 (473)
.+|..++..|+|++|+..|++++ ...|.+..+++.+|.|+..+|++++|+..++++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l---------------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQAL---------------KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHH---------------CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 47889999999999999999999 44567899999999999999999999999999999999975
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=2.3e-07 Score=90.75 Aligned_cols=132 Identities=18% Similarity=0.133 Sum_probs=115.3
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.....+..+..++..++++.|...+...+ ...|.++.++.-.+..+++.++..+|++.+++++.+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~---------------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l 369 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLI---------------AAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 34456667777788888888888888766 667778889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385 348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF 414 (473)
Q Consensus 348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f 414 (473)
+|+..-..+++|++|++.|++.+|+..++..+.-+|+++..|..|++.+..++...+........+|
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877766665544444
No 114
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.69 E-value=7.3e-07 Score=83.06 Aligned_cols=122 Identities=18% Similarity=0.256 Sum_probs=98.6
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
+..++..|..++..|+|..|+..|++.+...+.. +....+.+++|.+|+++++|..|+..+++.++..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 5567788999999999999999999999766541 3445567899999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHhcCC------------------HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHH
Q psy4385 349 PNNE---KAFFRRGNAYLDLNE------------------PELAEKDFQKVLQIDPNNK---AAVQKLTQTKQKLREQ 402 (473)
Q Consensus 349 p~~~---ka~~~~g~a~~~lg~------------------~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~ 402 (473)
|+++ .++|.+|.++..++. -.+|+..|++.++..|+.. ++...+..+..++.+.
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 8865 679999999766641 2578899999999999975 4555666666555444
No 115
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.69 E-value=3.8e-08 Score=96.46 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA---FFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka---~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
..+|..+.+++|+|.+|+++|+|++|+..|++||+++|++..+ ||++|.||..+|++++|+.+|++|+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4577889999999999999999999999999999999999865 999999999999999999999999998
No 116
>KOG2002|consensus
Probab=98.69 E-value=1.5e-07 Score=98.50 Aligned_cols=125 Identities=17% Similarity=0.159 Sum_probs=109.9
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD 342 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 342 (473)
.+....+..+..+++-+|-.|+|..+...+..|+... ...+..+..++++|.+|..+|+|++|..+|-
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t------------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT------------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh------------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3334455667778888899999999999998888432 3355678889999999999999999999999
Q ss_pred HHhhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 343 KAIELEPNN-EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 343 ~al~~~p~~-~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
++++.++++ .-+++.+|+.|...|+++.|..+|++++...|++.+....|+.++...
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 999999998 889999999999999999999999999999999999999999998776
No 117
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.68 E-value=3e-07 Score=70.95 Aligned_cols=85 Identities=32% Similarity=0.441 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
+++++|.++...+++++|+..+.++++..|.+..+++.+|.++...+++++|+..|.+++.+.|.+..++..++.+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999998888888887776
Q ss_pred HHHHH
Q psy4385 400 REQKI 404 (473)
Q Consensus 400 ~~~~~ 404 (473)
++..+
T Consensus 82 ~~~~~ 86 (100)
T cd00189 82 GKYEE 86 (100)
T ss_pred HhHHH
Confidence 55443
No 118
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.67 E-value=4.6e-07 Score=74.31 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAVQKL 392 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l 392 (473)
..++++|..+++.++|++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 467899999999999999999999999999877 5799999999999999999999999999999986 5677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4385 393 TQTKQKLREQKIKEKQVYANMFDKF 417 (473)
Q Consensus 393 ~~~~~~~~~~~~~~k~~~~~~f~~~ 417 (473)
+.+...+++..+.. +.+..+....
T Consensus 83 ~~~~~~~~~~~~A~-~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAK-ATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHH-HHHHHHHHHC
Confidence 88877665544333 4555555443
No 119
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.65 E-value=5.7e-08 Score=73.59 Aligned_cols=67 Identities=27% Similarity=0.341 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE-------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
|..+.+++|+|.+|..+|+|++|+.+|++++++. |.-+.+++++|.++..+|++++|+..+++|+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5678899999999999999999999999999662 223578999999999999999999999999976
No 120
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.65 E-value=6.3e-07 Score=81.38 Aligned_cols=123 Identities=20% Similarity=0.296 Sum_probs=96.1
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.+..++..|..++..|+|.+|+..|++.+...+.. +....+.+.+|.++++.++|..|+..+++.+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36688999999999999999999999999766542 345678899999999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHH
Q psy4385 348 EPNNE---KAFFRRGNAYLDLN-----------EPELAEKDFQKVLQIDPNNK---AAVQKLTQTKQKLREQ 402 (473)
Q Consensus 348 ~p~~~---ka~~~~g~a~~~lg-----------~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~ 402 (473)
.|+++ .++|.+|.+++.+. ...+|+..|+..+...|++. .+...+..+...+.+.
T Consensus 72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 99876 58999999987654 24589999999999999985 4555666666555443
No 121
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.64 E-value=5.2e-07 Score=79.40 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=91.7
Q ss_pred cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---H
Q psy4385 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---E 352 (473)
Q Consensus 276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ 352 (473)
.+.+|-...|..+...+...++.. -......+++++|.++..+++|++|+..|.+++.+.|+. +
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 72 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTT-------------SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRS 72 (168)
T ss_pred ccccccccccccchhhhhHhccCC-------------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhH
Confidence 445666667777777775554321 123467889999999999999999999999999997663 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
.+|+++|.+|..+|++++|+..|++++.++|.+...+..++.+...+.
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999999998888888887444
No 122
>KOG1128|consensus
Probab=98.64 E-value=1.2e-07 Score=96.54 Aligned_cols=131 Identities=14% Similarity=0.232 Sum_probs=115.4
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.+.+.+..|+-.+.+++|.+|.++++.++ +++|+....|+++|.|.++++++..|.++|.+++.+
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl---------------~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSL---------------EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHh---------------hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 45567788888899999999999999999 888999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385 348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF 414 (473)
Q Consensus 348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f 414 (473)
+|++..+|.|++.+|..+++-.+|...+++|++.+-++-.++.+...+.......+++- +.|.++.
T Consensus 549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~-~A~~rll 614 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI-KAYHRLL 614 (777)
T ss_pred CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999888888888877777776555443 3444444
No 123
>KOG4162|consensus
Probab=98.63 E-value=1.2e-07 Score=97.04 Aligned_cols=103 Identities=22% Similarity=0.299 Sum_probs=57.2
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH--HHHHHhh
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKD--QCDKAIE 346 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~--~~~~al~ 346 (473)
+..++..|..+..+|++.+|...|..|+ .++|..+.+...+|.|+++.|+...|.. ....+++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al---------------~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVAL---------------ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHH---------------hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 3344555555555555555555555555 4444455555555555555555555555 5555555
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~ 386 (473)
+||.|.+|||.+|.++..+|+.++|..+|..|+++++.++
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 5555555555555555555555555555555555555543
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=3.1e-07 Score=83.18 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=97.3
Q ss_pred HhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH
Q psy4385 273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE 352 (473)
Q Consensus 273 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ 352 (473)
..+.+.++..|+-+.+.....++.. ..+....++.-+|..++..|+|..|+..+.++..++|++.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~---------------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~ 134 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI---------------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW 134 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc---------------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh
Confidence 4455556666666666655555442 2223344555589999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ 408 (473)
Q Consensus 353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 408 (473)
++|.-+|.+|.++|++++|...|.+++++.|+++.+..+|+..+...++.+.+++-
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999988776665555543
No 125
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.62 E-value=5.4e-07 Score=98.33 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 397 (473)
..++..+|..+...|++++|+..+++++...|.++.+++.+|.++...|++++|+..|++++.++|++..++..++.+..
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCC
Q psy4385 398 KLREQKIKEKQVYANMFDKFAKH 420 (473)
Q Consensus 398 ~~~~~~~~~k~~~~~~f~~~~~~ 420 (473)
.+++..+.+. .++.+....++.
T Consensus 439 ~~~~~~~A~~-~~~~ll~~~Pd~ 460 (765)
T PRK10049 439 DLQEWRQMDV-LTDDVVAREPQD 460 (765)
T ss_pred HhCCHHHHHH-HHHHHHHhCCCC
Confidence 7766555443 555655544443
No 126
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.60 E-value=4.6e-07 Score=80.03 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385 314 KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390 (473)
Q Consensus 314 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 390 (473)
++..+.+++++|.++...|++++|+.+|++++.+.|+. ..+++++|.++..+|++++|+..|.+++.++|++..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 55677899999999999999999999999999987653 478999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q psy4385 391 KLTQTKQKLRE 401 (473)
Q Consensus 391 ~l~~~~~~~~~ 401 (473)
.++.+...+.+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 88888766544
No 127
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.59 E-value=4.1e-07 Score=83.44 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=98.7
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
+..+++.+..+++.|+|..|...|..-|+-.+.. +..+.+++-||.|++.+|+|+.|...|..+.+-.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~ 208 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNS------------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY 208 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence 3448889999999999999999999999877653 2346789999999999999999999999999998
Q ss_pred CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385 349 PNNE---KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391 (473)
Q Consensus 349 p~~~---ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 391 (473)
|+++ .+++.+|.+...+|+.++|.+.|+++++-.|....+...
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8765 569999999999999999999999999999998877544
No 128
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.3e-07 Score=84.29 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=100.3
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHH
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK---QAKPAKD 339 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~ 339 (473)
...+..++.+.-+|..|+..+++..|...|.+|+ .+.+.++..+.-+|.+++... .-.++..
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---------------rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL---------------RLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 4445667788899999999999999999999999 556667888888888877765 3567899
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385 340 QCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395 (473)
Q Consensus 340 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 395 (473)
.+++++.+||.|+.+++.+|..++..|+|.+|+..++..+.+.|.+..-...+...
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999876654444433
No 129
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.5e-07 Score=92.67 Aligned_cols=89 Identities=21% Similarity=0.437 Sum_probs=74.1
Q ss_pred CCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCCC
Q psy4385 46 PSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDS 125 (473)
Q Consensus 46 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~ 125 (473)
++.||.|+|.|.|+. ||..|..... .-+.|.+|.+.+||||+.+|.||+.|++..|.+....-|..... ++.
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK 229 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGK 229 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCC
Confidence 788999999999987 8998887633 45899999999999999999999999998865555455544333 678
Q ss_pred ceEEEEEEEeeeeccCC
Q psy4385 126 TLVFEVEMISWEAEDIS 142 (473)
Q Consensus 126 ~l~~~v~l~~~~~~~~~ 142 (473)
...|.|+|..+....++
T Consensus 230 ~a~F~V~vkeVk~~elp 246 (441)
T COG0544 230 EATFKVKVKEVKKRELP 246 (441)
T ss_pred ceEEEEEEEEEeecCCC
Confidence 99999999999876665
No 130
>KOG1310|consensus
Probab=98.58 E-value=3.7e-07 Score=89.58 Aligned_cols=115 Identities=23% Similarity=0.170 Sum_probs=101.8
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHH
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK---QAKPAKD 339 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~ 339 (473)
.+.++.++..+..||..|..+....|+..|.+++ +.-+....+|.|+|.++++.+ +.-.|+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~---------------q~~~~~~~~l~nraa~lmkRkW~~d~~~Alr 432 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAI---------------QYVPDAIYLLENRAAALMKRKWRGDSYLALR 432 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHh---------------hhccchhHHHHhHHHHHHhhhccccHHHHHH
Confidence 4556778899999999999999999999999999 556678899999999999864 7788999
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385 340 QCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392 (473)
Q Consensus 340 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 392 (473)
+|..|++++|...||+|+++.|+..++++.+|+.+...+....|.+.......
T Consensus 433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v 485 (758)
T KOG1310|consen 433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFV 485 (758)
T ss_pred hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhh
Confidence 99999999999999999999999999999999999998888888665544333
No 131
>KOG4234|consensus
Probab=98.55 E-value=2.1e-06 Score=74.49 Aligned_cols=140 Identities=18% Similarity=0.271 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE-----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~-----ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 394 (473)
-+-.-|+-+++.|+|..|...|..||.+.|..+ -.|.++|.|+++++.++.|+.++.+|++|+|.+..+....+.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 344567888999999999999999999998754 467799999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHh----------ccCchhhhhcCccchhhhccCcccccccCCceeec
Q psy4385 395 TKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEK----------KKEPDVMKTLGEWGAEERGRESTNFEKENPNIFML 464 (473)
Q Consensus 395 ~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 464 (473)
++.++.++. ..-.-|++++.......+..+...+ +...+.|..++..+..+ -..+.-..+|+.|.
T Consensus 177 ayek~ek~e-ealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~i----L~pFGlStdnFqmv 251 (271)
T KOG4234|consen 177 AYEKMEKYE-EALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFI----LSPFGLSTDNFQMV 251 (271)
T ss_pred HHHhhhhHH-HHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhh----cccccccccceeee
Confidence 888884444 4445677777665554422222111 12334444455555444 22344556666666
No 132
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.51 E-value=3.9e-07 Score=68.95 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=61.8
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
..+..+.++|..++..|+|++|+..|++++.+..... ...+..+.++.|+|.|+..+|++++|+.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG--------DDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--------THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578899999999999999999999999997743221 23456688999999999999999999999999997
Q ss_pred h
Q psy4385 347 L 347 (473)
Q Consensus 347 ~ 347 (473)
+
T Consensus 75 i 75 (78)
T PF13424_consen 75 I 75 (78)
T ss_dssp H
T ss_pred h
Confidence 6
No 133
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.51 E-value=1.9e-07 Score=68.56 Aligned_cols=67 Identities=22% Similarity=0.303 Sum_probs=59.3
Q ss_pred hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385 279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR 358 (473)
Q Consensus 279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~ 358 (473)
+++.|+|++|+..|++++ ...|.+..+++.+|.|+++.|++++|...+.+++..+|+++..+.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l---------------~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKAL---------------QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHH---------------HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 467899999999999999 67777899999999999999999999999999999999987777665
Q ss_pred HH
Q psy4385 359 GN 360 (473)
Q Consensus 359 g~ 360 (473)
++
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 134
>KOG1840|consensus
Probab=98.50 E-value=1.2e-06 Score=88.88 Aligned_cols=145 Identities=16% Similarity=0.181 Sum_probs=105.8
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
+.....+..++..|+.+|+|+.|+..+++|++.+..... ...+.......++|..|+.+++|.+|+..|++||
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344556667999999999999999999999976533211 1244555566679999999999999999999999
Q ss_pred hh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy4385 346 EL--------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID-----PNNKAAV---QKLTQTKQKLREQKIKEKQV 409 (473)
Q Consensus 346 ~~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~-----P~~~~~~---~~l~~~~~~~~~~~~~~k~~ 409 (473)
.+ +|.-+-++.++|.+|...|+|++|..++++|+++- .+.+.+. ..+..+...+.+.+++. ..
T Consensus 269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~-~l 347 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK-KL 347 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH-HH
Confidence 76 45556789999999999999999999999999874 2334443 34444455444444333 34
Q ss_pred HHHHhhhhc
Q psy4385 410 YANMFDKFA 418 (473)
Q Consensus 410 ~~~~f~~~~ 418 (473)
+++.++...
T Consensus 348 ~q~al~i~~ 356 (508)
T KOG1840|consen 348 LQKALKIYL 356 (508)
T ss_pred HHHHHHHHH
Confidence 555554443
No 135
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=1.4e-06 Score=80.94 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHH
Q psy4385 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN-KAAVQKLT 393 (473)
Q Consensus 315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~-~~~~~~l~ 393 (473)
-..+..|+.+|+.++...+++.|+....+|++.||+++.|-..+|.+++..|+|+.|++.++++++.||+- +.+...|.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999986 56778888
Q ss_pred HHHHHHHHHHHHH
Q psy4385 394 QTKQKLREQKIKE 406 (473)
Q Consensus 394 ~~~~~~~~~~~~~ 406 (473)
.|+..+++-.+..
T Consensus 257 ~~Y~~lg~~~~~~ 269 (389)
T COG2956 257 ECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHhCCHHHHH
Confidence 8888876655444
No 136
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.46 E-value=5.3e-07 Score=67.19 Aligned_cols=69 Identities=26% Similarity=0.407 Sum_probs=62.8
Q ss_pred cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHH
Q psy4385 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAF 355 (473)
Q Consensus 276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~ 355 (473)
...++..++|+.|+..+++++ .++|..+.++..+|.|+.++|+|..|+.+++++++.+|++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l---------------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERAL---------------ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHH---------------HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 456889999999999999999 77778899999999999999999999999999999999998887
Q ss_pred HHHH
Q psy4385 356 FRRG 359 (473)
Q Consensus 356 ~~~g 359 (473)
.-++
T Consensus 67 ~~~a 70 (73)
T PF13371_consen 67 ALRA 70 (73)
T ss_pred HHHH
Confidence 6554
No 137
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.46 E-value=1.6e-06 Score=93.74 Aligned_cols=151 Identities=9% Similarity=-0.015 Sum_probs=108.1
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC------------ChhHH-----HHHH--HHHHHHHHHHHHHH
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF------------EGEQE-----TERK--KTLTACHLNAAMCL 328 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~------------~~~~~-----~~~~--~~~~~~~~nla~~~ 328 (473)
.+...+..+...+++|+|..|+..|+++++..+..... ..++. ..+. +.....+..+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 45577788888999999999999999999877764211 01110 0112 22234444557789
Q ss_pred HHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ 408 (473)
Q Consensus 329 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 408 (473)
..+|+|++|++.|+++++.+|+++.+++.++.+|...+++++|+..+.++...+|.+... ..+..+.....+.. .+-.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~-~AL~ 190 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY-DALQ 190 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH-HHHH
Confidence 999999999999999999999999999988899999999999999999999999986654 33444443322222 2556
Q ss_pred HHHHHhhhhcCC
Q psy4385 409 VYANMFDKFAKH 420 (473)
Q Consensus 409 ~~~~~f~~~~~~ 420 (473)
.|++++...+..
T Consensus 191 ~~ekll~~~P~n 202 (822)
T PRK14574 191 ASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhCCCC
Confidence 777777665443
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.46 E-value=1.8e-06 Score=73.97 Aligned_cols=98 Identities=20% Similarity=0.144 Sum_probs=60.6
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
......+|..++..|+|++|+..|+.++...+. ..+...+.+++|.+++.+|+|++|+..++. +.-.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~ 114 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPD------------PELKPLARLRLARILLQQGQYDEALATLQQ-IPDE 114 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence 344555666777777777777777777632211 123445666677777777777777777654 2223
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy4385 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379 (473)
Q Consensus 349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 379 (473)
+-.+.++..+|.+|...|++++|+..|++||
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3344566667777777777777777776664
No 139
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.45 E-value=3.4e-06 Score=68.98 Aligned_cols=99 Identities=19% Similarity=0.065 Sum_probs=85.0
Q ss_pred HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP 349 (473)
Q Consensus 270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 349 (473)
..+++.+..+-..|+.++|+..|++++..-.. .+....++.++|.++..+|++++|+..+++++...|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p 69 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS------------GADRRRALIQLASTLRNLGRYDEALALLEEALEEFP 69 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 35678888999999999999999999953211 234567899999999999999999999999999888
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 350 N---NEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 350 ~---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
+ +......++.++..+|++++|+..+-.++.
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7 778888899999999999999999988875
No 140
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.5e-07 Score=76.25 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=59.7
Q ss_pred CCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCC
Q psy4385 163 PKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKG 230 (473)
Q Consensus 163 p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g 230 (473)
...++.|++||.++. +|++||+. |..|.+|.++ +++||+.||..|..|++..+.|+|..|||...
T Consensus 3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~---li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 3 IEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQ---LIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred ccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCC---cchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 456889999999999 89999974 8999999998 99999999999999999999999999999743
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.41 E-value=2.5e-06 Score=91.52 Aligned_cols=131 Identities=17% Similarity=0.164 Sum_probs=104.9
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
...++..+...+...+++++|++....++ ...|....+|+.+|..+++.+++..|... .++.+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l---------------~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHL---------------KEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 45677778888889999999999999999 55666788888888888888777666555 55544
Q ss_pred CCCC-------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 348 EPNN-------------------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ 408 (473)
Q Consensus 348 ~p~~-------------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 408 (473)
-+.+ -.|++.+|.||-++|++++|.+.|+++|+++|+|+.+.++++-.+... ..++...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~ 170 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAIT 170 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHH
Confidence 4444 489999999999999999999999999999999999999998887766 4455556
Q ss_pred HHHHHhhhh
Q psy4385 409 VYANMFDKF 417 (473)
Q Consensus 409 ~~~~~f~~~ 417 (473)
++++...+.
T Consensus 171 m~~KAV~~~ 179 (906)
T PRK14720 171 YLKKAIYRF 179 (906)
T ss_pred HHHHHHHHH
Confidence 666666553
No 142
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.38 E-value=1.3e-06 Score=83.63 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=98.1
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 350 (473)
.+......+...+++.++...+.++..... .+.++.++..+|.++.+.|++++|+..+++|++++|+
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPA-------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccC-------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 344455567788999999999888763211 2346788999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD 415 (473)
Q Consensus 351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 415 (473)
+..++..++.++...|++++|...+.......|.++..+..++.+...+++..++ ...|.+...
T Consensus 179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A-l~~~~~~~~ 242 (280)
T PF13429_consen 179 DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA-LEYLEKALK 242 (280)
T ss_dssp -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc-ccccccccc
Confidence 9999999999999999999999999999888899988999999999888765543 345555443
No 143
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.35 E-value=1.2e-06 Score=77.37 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=59.3
Q ss_pred CCCCCeEEEEEEeee-CCeEEEec----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCC
Q psy4385 163 PKDGANVEITLKGEC-EGKVFQEG----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKG 230 (473)
Q Consensus 163 p~~~~~v~~~~~g~~-~g~~~~~~----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g 230 (473)
...++.|+++|+.+. +|++|++. |++|.+|.+. ++++|+.||..|..|++..|.|+|..+||...
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~---lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGS---LISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCc---chHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 456789999999999 89999974 8999999987 99999999999999999999999999998743
No 144
>KOG1130|consensus
Probab=98.34 E-value=9e-07 Score=84.54 Aligned_cols=113 Identities=21% Similarity=0.269 Sum_probs=91.7
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD 342 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 342 (473)
..+.....++-++||.||-.|+|+.|+...+.-+.+.... .-....-.++.|+|+||+-+|+|+.|+++|.
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef---------GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF---------GDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh---------hhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 4556677788899999999999999999999888664321 1123346789999999999999999999999
Q ss_pred HHhhh----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385 343 KAIEL----EPN--NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384 (473)
Q Consensus 343 ~al~~----~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~ 384 (473)
+++.+ ... .+...|.+|.+|.-+.+|..|+.++.+-|.+..+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87654 322 4567899999999999999999999998887543
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=1e-06 Score=67.72 Aligned_cols=76 Identities=25% Similarity=0.291 Sum_probs=66.7
Q ss_pred cCChhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 331 LKQAKPAKDQCDKAIELEPN--NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK 407 (473)
Q Consensus 331 l~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 407 (473)
.++|+.|+..++++++.+|. +...++++|.||+++|+|++|+..+++ +..+|.+...+..++.|...+++..++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999999995 567788999999999999999999999 88999998999999999999888776654
No 146
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.33 E-value=2.2e-06 Score=92.75 Aligned_cols=122 Identities=10% Similarity=0.087 Sum_probs=101.3
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
...+...|..+...|+|.+|+..|++++ +.+|.++.++..++..+..++++++|+..+.+++..+
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL---------------~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSL---------------KKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 3445556778889999999999999999 6677788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406 (473)
Q Consensus 349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 406 (473)
|.+... ..++.++...+++.+|+..|+++++++|++.++...+-.+....+....+.
T Consensus 167 p~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 167 PTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred cchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 985544 445666666788877999999999999999999888887777665554443
No 147
>KOG2002|consensus
Probab=98.33 E-value=3.4e-06 Score=88.62 Aligned_cols=136 Identities=20% Similarity=0.211 Sum_probs=114.7
Q ss_pred HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344 (473)
Q Consensus 265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 344 (473)
..-.++.++.+|..+..+|+|++|..+|.+++...+.. ..-.++.+|+.|++.|+++.|+.++.++
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--------------~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--------------FVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--------------ccccccchhHHHHHhchHHHHHHHHHHH
Confidence 34557789999999999999999999999999554431 2567889999999999999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385 345 IELEPNNEKAFFRRGNAYLDLN----EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK 416 (473)
Q Consensus 345 l~~~p~~~ka~~~~g~a~~~lg----~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~ 416 (473)
+...|++.....-+|..|...+ .-+.|...+.++++..|.+..++-.++.++........ -..|.++...
T Consensus 369 ~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s--L~~~~~A~d~ 442 (1018)
T KOG2002|consen 369 LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS--LDAYGNALDI 442 (1018)
T ss_pred HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH--HHHHHHHHHH
Confidence 9999999999999999999886 67899999999999999999999999988866533332 4455555433
No 148
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.30 E-value=1.2e-05 Score=75.51 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=83.3
Q ss_pred HHHHHHHHHHH-HHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHH
Q psy4385 318 TACHLNAAMCL-LKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAVQ 390 (473)
Q Consensus 318 ~~~~~nla~~~-~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~---~~~~~ 390 (473)
....++.|..+ ++.++|++|+..|+..+...|++ +.++|.+|.+|+..|+|++|+..|++++...|++ .+++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45677888876 66799999999999999999998 4799999999999999999999999999999986 45666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy4385 391 KLTQTKQKLREQKIKEKQVYANMFDKFAKHDTE 423 (473)
Q Consensus 391 ~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~ 423 (473)
.++.+...++ ..+..++.|+++.....+....
T Consensus 222 klg~~~~~~g-~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKG-DTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHH
Confidence 6677776553 3345555677666665554433
No 149
>KOG2076|consensus
Probab=98.29 E-value=9.5e-06 Score=84.73 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=96.5
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
+....+++.+|..|-++|+..+|...+-.|. .++|.+...|..+|....++|++.+|+-+|++||
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA---------------HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA---------------HLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHH---------------hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3456789999999999999999999999988 6666677899999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy4385 346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383 (473)
Q Consensus 346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P 383 (473)
+.+|.|.+.+++++..|.++|++..|...|.+++.++|
T Consensus 235 ~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 235 QANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred hcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999
No 150
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.29 E-value=4.4e-06 Score=82.23 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=63.1
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHH---HHHHHHHHHHHHcCChhHHHH
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT---ACHLNAAMCLLKLKQAKPAKD 339 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~nla~~~~kl~~~~~A~~ 339 (473)
...+..+..+.++|.+|++.|+|++|+..|++|| +++|.+. .+|+|+|.||.++|++++|+.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rAL---------------eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETAL---------------ELNPNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hhCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456678899999999999999999999999999 5555555 459999999999999999999
Q ss_pred HHHHHhhhC
Q psy4385 340 QCDKAIELE 348 (473)
Q Consensus 340 ~~~~al~~~ 348 (473)
++.+|+++.
T Consensus 134 ~LrrALels 142 (453)
T PLN03098 134 CLRTALRDY 142 (453)
T ss_pred HHHHHHHhc
Confidence 999999983
No 151
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=5.8e-06 Score=81.10 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=99.3
Q ss_pred HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
+--.|..+++.++..+|++.+++++ .++|....+..|+|.++++.|++.+|+...+..+.-+|++
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal---------------~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKAL---------------ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH---------------hcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 3346778899999999999999999 5566678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
+..|..++++|..+|+-.+|...+-..+.+.-.-..+...+....++.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999888888877667766666665444
No 152
>KOG4648|consensus
Probab=98.27 E-value=1.7e-06 Score=80.88 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
+-..|+.|+++|.|++||++|.+++.++|.|+..+-+|+.||+++..|..|..++..|+.||-....++...+.++..++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999999999999999877777777777777665
Q ss_pred HHHHHHHHHHHHHh
Q psy4385 401 EQKIKEKQVYANMF 414 (473)
Q Consensus 401 ~~~~~~k~~~~~~f 414 (473)
...++ ++-|...+
T Consensus 180 ~~~EA-KkD~E~vL 192 (536)
T KOG4648|consen 180 NNMEA-KKDCETVL 192 (536)
T ss_pred hHHHH-HHhHHHHH
Confidence 54433 33444444
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.1e-05 Score=72.11 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCHHH
Q psy4385 312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE---PELAEKDFQKVLQIDPNNKAA 388 (473)
Q Consensus 312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~---~~~A~~~~~~al~l~P~~~~~ 388 (473)
..+|.+..-|.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.+++...+ -.+|...|++++.+||+|..+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 66788899999999999999999999999999999999999999999998877643 578999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHh
Q psy4385 389 VQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEK 429 (473)
Q Consensus 389 ~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~~~~~~ 429 (473)
...|+......+++.+ .-..++.|++.+...++...--++
T Consensus 230 l~lLA~~afe~g~~~~-A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAE-AAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHH-HHHHHHHHHhcCCCCCchHHHHHH
Confidence 9999998877766554 445889999888877766655544
No 154
>KOG4162|consensus
Probab=98.21 E-value=1.1e-05 Score=82.84 Aligned_cols=118 Identities=21% Similarity=0.189 Sum_probs=103.9
Q ss_pred HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
+...+..+.+.++-++|..+..+|- .+.+..+..|+.+|.++...|++.+|.+.|..|+.+||++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~---------------~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEAS---------------KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHH---------------hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 3344555566677777888888887 6678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385 352 EKAFFRRGNAYLDLNEPELAEK--DFQKVLQIDPNNKAAVQKLTQTKQKLREQKI 404 (473)
Q Consensus 352 ~ka~~~~g~a~~~lg~~~~A~~--~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 404 (473)
+.+.--+|.++.+.|+-.-|.. .+..|+++||.|.++|+.|+.+.++++...+
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 9999999999999998877777 9999999999999999999999988876653
No 155
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.21 E-value=1.1e-05 Score=81.54 Aligned_cols=144 Identities=10% Similarity=0.036 Sum_probs=108.8
Q ss_pred ccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHH--HHHHHHHHHHcCCh
Q psy4385 257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC--HLNAAMCLLKLKQA 334 (473)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~kl~~~ 334 (473)
.|...+....+....+...+..+...|+++.|....+++++..+.. ... ..-+....+..++.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~---------------~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD---------------RAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---------------ccchhHHHHHhhhcCCCCh
Confidence 3443444444466777888999999999999999999999654432 211 12233334456888
Q ss_pred hHHHHHHHHHhhhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 335 KPAKDQCDKAIELEPNNE--KAFFRRGNAYLDLNEPELAEKDFQ--KVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVY 410 (473)
Q Consensus 335 ~~A~~~~~~al~~~p~~~--ka~~~~g~a~~~lg~~~~A~~~~~--~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~ 410 (473)
..++..++++++.+|+++ ..+..+|.++++.|+|++|..+|+ ++++.+|++.. ...++.+..++++..+ .++.|
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~-A~~~~ 393 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAE-AAAMR 393 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHH-HHHHH
Confidence 999999999999999999 888899999999999999999999 68889998766 5588999888866444 45577
Q ss_pred HHHhhhh
Q psy4385 411 ANMFDKF 417 (473)
Q Consensus 411 ~~~f~~~ 417 (473)
++.+.-+
T Consensus 394 ~~~l~~~ 400 (409)
T TIGR00540 394 QDSLGLM 400 (409)
T ss_pred HHHHHHH
Confidence 7655443
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.20 E-value=2.4e-05 Score=64.01 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN---NKAAVQKL 392 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~---~~~~~~~l 392 (473)
.+++++|.++-.+|+.++|+..|.+++...... ..++..+|.+|..+|++++|+..|++++.-.|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999986544 579999999999999999999999999999888 77777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4385 393 TQTKQKLREQKIKEKQV 409 (473)
Q Consensus 393 ~~~~~~~~~~~~~~k~~ 409 (473)
..+...+++.++.-...
T Consensus 82 Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 87777776666655443
No 157
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.20 E-value=2.3e-06 Score=53.21 Aligned_cols=33 Identities=39% Similarity=0.764 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385 (473)
Q Consensus 353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~ 385 (473)
++|+++|.+|..+++|++|+.+|++|++++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 566677777777777777777777777776653
No 158
>KOG3060|consensus
Probab=98.18 E-value=6.1e-05 Score=68.07 Aligned_cols=131 Identities=16% Similarity=0.107 Sum_probs=77.3
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC-------------CChhHHH------HHHHHHHHHHHHHHHHHHHc
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG-------------FEGEQET------ERKKTLTACHLNAAMCLLKL 331 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~-------------~~~~~~~------~~~~~~~~~~~nla~~~~kl 331 (473)
..+-.|..+-..|+|++|+..|...+.-.+.+.. .+.+-.. +.-+.+..+|..+|..|+.+
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence 4445566777889999999999998844332110 0001001 11223455666666666666
Q ss_pred CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN---EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401 (473)
Q Consensus 332 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 401 (473)
++|++|+-++++++-+.|.|+-.+-|+|.+++-+| +++-|.++|.++++++|.+..++..+-.|...+.+
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666665554 34556666666666666555555555555554433
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.17 E-value=1.5e-05 Score=76.37 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=88.6
Q ss_pred HHhhHHHHhhcchhhhc-ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385 266 LEQGKLLKERGTTYFKQ-DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 344 (473)
...+..+.+.|..+... ++++.|+..|++|+.++... ........++.++|.++.++++|++|+..|+++
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---------GSPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34578888999999998 99999999999999887643 223345678899999999999999999999999
Q ss_pred hhhCCC------CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385 345 IELEPN------NEK-AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386 (473)
Q Consensus 345 l~~~p~------~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~ 386 (473)
....-+ +++ .+++.+.|++..|++..|...|++....+|.-.
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 875322 233 456888999999999999999999999999653
No 160
>KOG1128|consensus
Probab=98.15 E-value=8.3e-06 Score=83.41 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385 314 KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393 (473)
Q Consensus 314 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 393 (473)
+..++.+...+|...+..++|.+|..+++..++++|-....||++|.|..+++++..|..+|.++..++|++..+++++.
T Consensus 481 n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls 560 (777)
T KOG1128|consen 481 NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS 560 (777)
T ss_pred hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence 34455566667777777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy4385 394 QTKQKLREQKIKEK 407 (473)
Q Consensus 394 ~~~~~~~~~~~~~k 407 (473)
..+.++++..++-+
T Consensus 561 ~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 561 TAYIRLKKKKRAFR 574 (777)
T ss_pred HHHHHHhhhHHHHH
Confidence 99888766554433
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=7.9e-05 Score=63.69 Aligned_cols=132 Identities=15% Similarity=0.079 Sum_probs=97.6
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
..+...+......+..+++..+...+.+.+.-.+. .+....+.+.+|.+++..|+|++|+..++.++.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS------------SPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34555666666666788888888878877754332 224467888999999999999999999999999
Q ss_pred hCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 347 LEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYAN 412 (473)
Q Consensus 347 ~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~ 412 (473)
..|+. ..+.++++.+++..|+|++|+..+..+ .-.+-.+.+...++.+....++..+ .+..|++
T Consensus 77 ~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~-A~~~y~~ 143 (145)
T PF09976_consen 77 NAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDE-ARAAYQK 143 (145)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHH-HHHHHHH
Confidence 87664 468899999999999999999999763 2233345667778888877655443 3334443
No 162
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.14 E-value=2e-06 Score=53.41 Aligned_cols=34 Identities=41% Similarity=0.493 Sum_probs=31.6
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy4385 340 QCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEK 373 (473)
Q Consensus 340 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~ 373 (473)
.|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 163
>KOG1174|consensus
Probab=98.14 E-value=3e-05 Score=74.45 Aligned_cols=128 Identities=15% Similarity=0.060 Sum_probs=95.9
Q ss_pred chhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCCh-------
Q psy4385 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA------- 334 (473)
Q Consensus 262 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~------- 334 (473)
+........++.-.|+.+...++.++|+-.|+.|+.+. |....+|-.+-.||+..+.+
T Consensus 327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---------------p~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---------------PYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---------------hhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 33344566778889999999999999999999999544 44455555555555544433
Q ss_pred -----------------------------hHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385 335 -----------------------------KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385 (473)
Q Consensus 335 -----------------------------~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~ 385 (473)
++|...++++|.++|...+|...++..+..-|.+.+++..++++|...|+.
T Consensus 392 n~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred HHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 567777777788888889999999999999999999999999999988775
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4385 386 KAAVQKLTQTKQKLREQKIK 405 (473)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~~ 405 (473)
..+..|+.+........+.
T Consensus 472 -~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 472 -NLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred -HHHHHHHHHHHHhhhHHHH
Confidence 4677777776665444433
No 164
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.14 E-value=5.2e-05 Score=76.71 Aligned_cols=124 Identities=16% Similarity=0.139 Sum_probs=95.1
Q ss_pred HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344 (473)
Q Consensus 265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 344 (473)
+...+......|...+..|+|..|.+...++.+..+ .....+.-.|.++..+|+++.|..++.++
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~---------------~~~~~~llaA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAA---------------EPVLNLIKAAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445677777889999999999999999999885433 23445566677788888888888888888
Q ss_pred hhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385 345 IELEPNNE-KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK 403 (473)
Q Consensus 345 l~~~p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 403 (473)
.+..|++. .+...++..++..|+++.|+..+++.++..|+++.++..+..++...++..
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 88777764 344456888888888888888888888888888888777777776665554
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=6.6e-05 Score=64.65 Aligned_cols=140 Identities=12% Similarity=0.127 Sum_probs=109.8
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
......+|+.+...|+|.+|...|++++.-+ -......++.+|++++..+++..|....+++.+.+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~--------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGI--------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc--------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 3455678999999999999999999999422 22346788899999999999999999999999999
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchH
Q psy4385 349 PN--NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEK 424 (473)
Q Consensus 349 p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~ 424 (473)
|. .+....-.|.+|..+|.+++|...|+.++...|. ..+.........++.... ..+..|..+++.+.....--
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~-ea~aq~~~v~d~~~r~~~H~ 230 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLR-EANAQYVAVVDTAKRSRPHY 230 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHhcchhH
Confidence 85 5677888899999999999999999999999987 555555565555554333 44556677777665544333
No 166
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.13 E-value=1.2e-05 Score=79.67 Aligned_cols=100 Identities=12% Similarity=0.004 Sum_probs=86.2
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
...+...|..+...|++.+|+..|++++ .+.|.+..++..+|.+++..|++++|+..+.+++...
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al---------------~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRAL---------------ELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 4455677888999999999999999999 5555667889999999999999999999999999988
Q ss_pred CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy4385 349 PNNE----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383 (473)
Q Consensus 349 p~~~----ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P 383 (473)
|.++ ..|+.+|.++..+|++++|+..|++++...|
T Consensus 179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 7433 4567899999999999999999999987776
No 167
>KOG1173|consensus
Probab=98.12 E-value=1.2e-05 Score=80.01 Aligned_cols=134 Identities=20% Similarity=0.193 Sum_probs=117.1
Q ss_pred HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344 (473)
Q Consensus 265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 344 (473)
.+..+..|...|--|+-.+++.+|.++|.+|. .+++....+|...|..+.-.++.++|+.+|..|
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat---------------~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKAT---------------TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHh---------------hcCccccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence 34556678888999999999999999999999 778888999999999999999999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385 345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF 414 (473)
Q Consensus 345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f 414 (473)
-++-|......+.+|.=|..+++++-|...|..|+.+.|+++-+..+++.+.-..+.+.++.+ .+++.+
T Consensus 373 arl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~-~f~~~l 441 (611)
T KOG1173|consen 373 ARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALK-YFQKAL 441 (611)
T ss_pred HHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHH-HHHHHH
Confidence 999999989999999999999999999999999999999999999999988776655554443 444444
No 168
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.11 E-value=8.4e-05 Score=74.89 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=97.6
Q ss_pred HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHH-HHHHHHcCChhHHHHHHHH
Q psy4385 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA-AMCLLKLKQAKPAKDQCDK 343 (473)
Q Consensus 265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nl-a~~~~kl~~~~~A~~~~~~ 343 (473)
+...+......|...+..|+|..|.+...++-...+ .+.+++.+ |....++|+++.|..++.+
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~----------------~p~l~~llaA~aA~~~g~~~~A~~~l~~ 143 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE----------------QPVVNYLLAAEAAQQRGDEARANQHLER 143 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc----------------chHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445677778889999999999999977776653211 13333444 5555999999999999999
Q ss_pred HhhhCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385 344 AIELEPNNEKA-FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKI 404 (473)
Q Consensus 344 al~~~p~~~ka-~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 404 (473)
+.+.+|++.-+ ....+..+...|+++.|+..++++++.+|+|+.+...+..++...++..+
T Consensus 144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 99999988543 44668999999999999999999999999999999998888877654443
No 169
>KOG1156|consensus
Probab=98.11 E-value=1.5e-05 Score=80.45 Aligned_cols=118 Identities=12% Similarity=0.140 Sum_probs=94.9
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 350 (473)
.+.......|..++|...+...+..+. -.|.....+--.|..+..+|+-++|...+..++..|+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~---------------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~ 73 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILK---------------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK 73 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH---------------hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc
Confidence 444555667888888888888888873 34445556667788888889999999999999998888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK 403 (473)
Q Consensus 351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 403 (473)
..-+|.-+|..+....+|++|+++|+.||.++|+|..+++-|+.+..+++...
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 88889999999988899999999999999999999888888888877776554
No 170
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.10 E-value=0.00011 Score=62.83 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=87.3
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC-------CChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG-------FEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK 343 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 343 (473)
.+...|......++...++..+.+++.+...... +.......+......+...++..+...|+++.|+..|.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3444566666778999999999999987654221 223455677888889999999999999999999999999
Q ss_pred HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
++.++|.+..+|..+-.+|...|++.+|++.|.++.+
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987743
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=98.10 E-value=6.8e-05 Score=63.97 Aligned_cols=94 Identities=9% Similarity=-0.081 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385 313 RKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392 (473)
Q Consensus 313 ~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 392 (473)
+.+......+..|.-++..|++++|...|.-+..+||.|++.++.+|.|+..+++|++|+..|..|..++++|+......
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34445667778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy4385 393 TQTKQKLREQKIKE 406 (473)
Q Consensus 393 ~~~~~~~~~~~~~~ 406 (473)
+.|...+++...+.
T Consensus 112 gqC~l~l~~~~~A~ 125 (165)
T PRK15331 112 GQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHHHhCCHHHHH
Confidence 99998886555443
No 172
>KOG3060|consensus
Probab=98.09 E-value=3.8e-05 Score=69.34 Aligned_cols=85 Identities=18% Similarity=0.167 Sum_probs=67.6
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHH
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK---QAKPAKDQCDK 343 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~ 343 (473)
...+++.+++..|+..++|.+|.-+|++.+ -++|.++.++..+|.+++-+| ++.-|..+|.+
T Consensus 152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~l---------------l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 152 NDQEAWHELAEIYLSEGDFEKAAFCLEELL---------------LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred CcHHHHHHHHHHHHhHhHHHHHHHHHHHHH---------------HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456677888888888888888888888888 667788888888888877766 67778888888
Q ss_pred HhhhCCCCHHHHHHHHHHHHhcC
Q psy4385 344 AIELEPNNEKAFFRRGNAYLDLN 366 (473)
Q Consensus 344 al~~~p~~~ka~~~~g~a~~~lg 366 (473)
+++++|.+..++|-+..|...+-
T Consensus 217 alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 217 ALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHhChHhHHHHHHHHHHHHHHH
Confidence 88888888888887766655443
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.09 E-value=7.1e-06 Score=84.61 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385 316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387 (473)
Q Consensus 316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~ 387 (473)
..+.+|.-+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|+..|++|++++|.++.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3456788889999999999999999999999999 5789999999999999999999999999999999874
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.05 E-value=5.7e-05 Score=78.03 Aligned_cols=130 Identities=10% Similarity=0.115 Sum_probs=100.2
Q ss_pred hHHHHhhcchhhhc---ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC--------hhHH
Q psy4385 269 GKLLKERGTTYFKQ---DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ--------AKPA 337 (473)
Q Consensus 269 a~~~~~~G~~~~~~---~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~--------~~~A 337 (473)
|-.++-+|..++.+ +++..|+.+|++|+ +++|.++.+|--++.||..... ...|
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---------------~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a 403 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---------------KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAAL 403 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---------------HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 34455566666544 44889999999999 7788888899888888866532 3455
Q ss_pred HHHHHHHhhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385 338 KDQCDKAIEL--EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD 415 (473)
Q Consensus 338 ~~~~~~al~~--~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 415 (473)
.....+++.+ +|..+.+|.-+|..+...|++++|...|++|+.++| +..++..++.++...++..++. ..|.+.|.
T Consensus 404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~-~~~~~A~~ 481 (517)
T PRK10153 404 STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAA-DAYSTAFN 481 (517)
T ss_pred HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 5666666664 788889999999999999999999999999999999 4788999999988877666554 35555553
No 175
>PRK11906 transcriptional regulator; Provisional
Probab=98.05 E-value=3.9e-05 Score=75.80 Aligned_cols=119 Identities=11% Similarity=0.001 Sum_probs=94.2
Q ss_pred Hhhcchhhhcc---cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc---------CChhHHHHH
Q psy4385 273 KERGTTYFKQD---KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL---------KQAKPAKDQ 340 (473)
Q Consensus 273 ~~~G~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl---------~~~~~A~~~ 340 (473)
+.+|..++.++ ....|+..|.+|+..- .++|..+.+|.-+|.||+.+ ..-.+|...
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~------------~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKS------------DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcc------------cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 34444443333 4577888899998321 44667788999999998765 134578889
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385 341 CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK 403 (473)
Q Consensus 341 ~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 403 (473)
..+|+++||.++.|++.+|.++...++++.|...|++|+.++|+...++..++.+...-++..
T Consensus 327 A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 327 LDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999998888765544433
No 176
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.05 E-value=1e-05 Score=53.62 Aligned_cols=41 Identities=29% Similarity=0.538 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393 (473)
Q Consensus 353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 393 (473)
.+++.+|.+|..+|++++|++.|+++++.+|+|..++..|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555666666666666666666666666666666555544
No 177
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.03 E-value=1.1e-05 Score=50.09 Aligned_cols=34 Identities=41% Similarity=0.669 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385 352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385 (473)
Q Consensus 352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~ 385 (473)
+++|+.+|.+++.+|+|++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777764
No 178
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.03 E-value=7.8e-06 Score=50.79 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
+.+|+++|.+|+.+++|++|+.+|++||+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3589999999999999999999999999999974
No 179
>KOG4642|consensus
Probab=98.03 E-value=1.2e-05 Score=71.82 Aligned_cols=85 Identities=25% Similarity=0.180 Sum_probs=76.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ 402 (473)
Q Consensus 323 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 402 (473)
--|.+++.-+.|..|+.+|.+||.++|..+..|-+++.||+++.+|+.+..++.+|++++|+...+++.|+.+....+.+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 44677778889999999999999999999999999999999999999999999999999999999999999988777666
Q ss_pred HHHHH
Q psy4385 403 KIKEK 407 (473)
Q Consensus 403 ~~~~k 407 (473)
.+.-+
T Consensus 95 ~eaI~ 99 (284)
T KOG4642|consen 95 DEAIK 99 (284)
T ss_pred cHHHH
Confidence 55433
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=2.1e-05 Score=77.83 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=75.8
Q ss_pred cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385 282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA 361 (473)
Q Consensus 282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 361 (473)
.++++.|+..+++.... + +....-+|.+++..++..+|++...++|...|.+...+.--+..
T Consensus 182 t~~~~~ai~lle~L~~~---------------~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRER---------------D---PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred cccHHHHHHHHHHHHhc---------------C---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35577777777765522 1 22344567777777777777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385 362 YLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406 (473)
Q Consensus 362 ~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 406 (473)
++..++|+.|+...++|..+.|++-..|..|+.++..+++.+.+-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 777777777777777777777777777777777777776666554
No 181
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.02 E-value=4.1e-05 Score=75.87 Aligned_cols=143 Identities=9% Similarity=-0.065 Sum_probs=107.9
Q ss_pred HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC-------------C---hhHHH------HHHHHHHHHHHHHHHH
Q psy4385 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF-------------E---GEQET------ERKKTLTACHLNAAMC 327 (473)
Q Consensus 270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~-------------~---~~~~~------~~~~~~~~~~~nla~~ 327 (473)
+.....+..++..|++++|...+++++...+.+... . ..... ...+.....+.++|.+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 345567888999999999999999999776543210 0 00001 1234445677789999
Q ss_pred HHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHHH
Q psy4385 328 LLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA----VQKLTQTKQKLREQK 403 (473)
Q Consensus 328 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~----~~~l~~~~~~~~~~~ 403 (473)
+..+|++++|+..++++++++|+++.++..+|.++...|++++|+..+.+++...|.+... +..++.+....++..
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998864432 335677766665554
Q ss_pred HHHHHHHHHH
Q psy4385 404 IKEKQVYANM 413 (473)
Q Consensus 404 ~~~k~~~~~~ 413 (473)
+.. ..|.++
T Consensus 204 ~A~-~~~~~~ 212 (355)
T cd05804 204 AAL-AIYDTH 212 (355)
T ss_pred HHH-HHHHHH
Confidence 443 355554
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=0.00012 Score=67.53 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHH
Q psy4385 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE---KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK---AAVQKLTQ 394 (473)
Q Consensus 321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~---ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~ 394 (473)
.++.|.-+++.|+|..|...|..=++.-|+.. .|+|.+|.+++.+|+|++|...|..+.+-.|+++ ++...|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 78999999999999999999999999998864 7999999999999999999999999999998875 55667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Q psy4385 395 TKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEE 428 (473)
Q Consensus 395 ~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~~~~~ 428 (473)
+...+++ .+..+..++.+-++....+.....+.
T Consensus 224 ~~~~l~~-~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 224 SLGRLGN-TDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHhcC-HHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 7766643 34555677777777666655544443
No 183
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.96 E-value=1.8e-05 Score=52.44 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA 361 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 361 (473)
.+++.+|.+|..+|++++|++.++++++.+|+|+.+++.+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4688999999999999999999999999999999999998863
No 184
>KOG1129|consensus
Probab=97.95 E-value=2.2e-05 Score=73.26 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385 313 RKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392 (473)
Q Consensus 313 ~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 392 (473)
..|.+...++..|.+|-.+++++.|++.|..+++++|.|+.+.-..|.-|+--++.+-|+.+|++.|++.-.+++...++
T Consensus 285 ~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni 364 (478)
T KOG1129|consen 285 SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI 364 (478)
T ss_pred cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence 34556778888888888889999999999999988888888887888888888888888888888888887888887777
Q ss_pred HHHHHH
Q psy4385 393 TQTKQK 398 (473)
Q Consensus 393 ~~~~~~ 398 (473)
+.|..-
T Consensus 365 gLCC~y 370 (478)
T KOG1129|consen 365 GLCCLY 370 (478)
T ss_pred HHHHHh
Confidence 777543
No 185
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.95 E-value=8.4e-05 Score=74.88 Aligned_cols=133 Identities=13% Similarity=0.067 Sum_probs=103.0
Q ss_pred chhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy4385 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQC 341 (473)
Q Consensus 262 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 341 (473)
+.........+...+..+...|+++.|.....++++.-. +..+..-.+ ++..+++++++..+
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~----------------~~~l~~l~~--~l~~~~~~~al~~~ 317 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY----------------DERLVLLIP--RLKTNNPEQLEKVL 317 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------------CHHHHHHHh--hccCCChHHHHHHH
Confidence 344445666777789999999999999999999984211 122222222 23559999999999
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385 342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF 414 (473)
Q Consensus 342 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f 414 (473)
++.++.+|+++..++.+|.+++..++|++|...|++++++.|++.. +..+..+..++++..+. .+.|++.+
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A-~~~~~~~l 388 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA-AAMRRDGL 388 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHHHH
Confidence 9999999999999999999999999999999999999999999754 45788888877665544 44565544
No 186
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=5.8e-05 Score=81.32 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=95.1
Q ss_pred HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh--
Q psy4385 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL-- 347 (473)
Q Consensus 270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-- 347 (473)
.++..+|.+|-+.|++++|...|++++ +++|.++.+++|+|..|... +.++|+.++.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L---------------~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLV---------------KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH---------------hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999 55677888899999888888 888888888888743
Q ss_pred ------------------CCCCHHHHHH--------HH------------HHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385 348 ------------------EPNNEKAFFR--------RG------------NAYLDLNEPELAEKDFQKVLQIDPNNKAAV 389 (473)
Q Consensus 348 ------------------~p~~~ka~~~--------~g------------~a~~~lg~~~~A~~~~~~al~l~P~~~~~~ 389 (473)
+|++...+++ ++ .+|....+|++++..|+.+|+++|.|..++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 5665544322 24 788889999999999999999999999999
Q ss_pred HHHHHHHH
Q psy4385 390 QKLTQTKQ 397 (473)
Q Consensus 390 ~~l~~~~~ 397 (473)
..|..|+.
T Consensus 261 ~~l~~~y~ 268 (906)
T PRK14720 261 EELIRFYK 268 (906)
T ss_pred HHHHHHHH
Confidence 99999986
No 187
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.91 E-value=6.4e-05 Score=51.51 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
..+|.+|.+++++|+|++|+.+++.+|+++|+|.++......+..++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999887777666554
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.89 E-value=0.00057 Score=61.98 Aligned_cols=110 Identities=17% Similarity=0.212 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q psy4385 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA---AVQ 390 (473)
Q Consensus 317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~---~~~ 390 (473)
....++..|..++..|+|.+|+..+++++...|.. ..|.+.+|.+++..++|++|+..|++.++..|+++. +..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35678899999999999999999999999998764 489999999999999999999999999999999864 455
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHhhhhcCCCchHHH
Q psy4385 391 KLTQTKQKLREQK----------IKEKQVYANMFDKFAKHDTEKEE 426 (473)
Q Consensus 391 ~l~~~~~~~~~~~----------~~~k~~~~~~f~~~~~~~~~~~~ 426 (473)
.++.+...+.... ......++.+..+.++..-....
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A 129 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA 129 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH
Confidence 5666544432221 23344666666666665544333
No 189
>KOG1174|consensus
Probab=97.88 E-value=0.00011 Score=70.63 Aligned_cols=138 Identities=17% Similarity=0.152 Sum_probs=105.2
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCCh------------hHHHHH-------HHHHHHHHHHHHHHH
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEG------------EQETER-------KKTLTACHLNAAMCL 328 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~------------~~~~~~-------~~~~~~~~~nla~~~ 328 (473)
....+..+|..+|..|++..|+..|+++..+.++.-..-+ +....+ ......-|+--+...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 3456778999999999999999999999877665222111 111110 111122344444556
Q ss_pred HHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4385 329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK 405 (473)
Q Consensus 329 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 405 (473)
+..++|..|+.+..++|+.+|.++.+|.-.|.++..+++.++|+-.|+.|..+.|..-..+..|-.++-..+..+++
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 67889999999999999999999999999999999999999999999999999999988888887777665555443
No 190
>KOG1127|consensus
Probab=97.87 E-value=5.2e-05 Score=80.07 Aligned_cols=138 Identities=17% Similarity=0.109 Sum_probs=107.5
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCC---------hhHHHH------------HHHHHHHHHHHHHH
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE---------GEQETE------------RKKTLTACHLNAAM 326 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~nla~ 326 (473)
.+..+--+|..|..--+..+|..+|.+|..+...+.... .++++. ........|..+|.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 344555677777666688899999999998776533211 011111 11122234556899
Q ss_pred HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4385 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK 405 (473)
Q Consensus 327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 405 (473)
.|++.+++.+|+.+++.|++.+|.+..+|..+|.+|...|+|..|++.|.+|..++|.+.-.+...+.+...++++.+.
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988888777777777777654
No 191
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.00027 Score=66.06 Aligned_cols=107 Identities=13% Similarity=0.166 Sum_probs=93.4
Q ss_pred HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344 (473)
Q Consensus 265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 344 (473)
..+.|.-+-+++..+....+.+.|.....+|+ +.+|..+.+-.-+|.+++..|+|..|++.++.+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl---------------qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKAL---------------QADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---------------hhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 44567777788888888888888888888888 667777888889999999999999999999999
Q ss_pred hhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385 345 IELEPNNE-KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386 (473)
Q Consensus 345 l~~~p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~ 386 (473)
++.||... ..+-.+..||..+|+.++.+..+.++.+..+...
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 99999865 6778899999999999999999999999887654
No 192
>KOG2003|consensus
Probab=97.86 E-value=0.00027 Score=68.69 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=99.7
Q ss_pred cccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy4385 250 NFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329 (473)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 329 (473)
+++++.+.+.-.......-.+++++.|..+-..|+.++|+.+|-+.-.+ -..++..+..+|..|-
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i---------------l~nn~evl~qianiye 569 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI---------------LLNNAEVLVQIANIYE 569 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHH
Confidence 3444444443333334455678999999999999999999999887733 3345667777777777
Q ss_pred HcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhc----------------------------------CCHHHHHHHH
Q psy4385 330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL----------------------------------NEPELAEKDF 375 (473)
Q Consensus 330 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l----------------------------------g~~~~A~~~~ 375 (473)
.+.+..+||+.+-++..+-|+++..+..+|..|-+- .-++.|+.+|
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777777777777777777666666555555555444 4446677777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4385 376 QKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFA 418 (473)
Q Consensus 376 ~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~ 418 (473)
++|.-+.|+...-..-++.|.++-+.+. +.-..|+.+-.++.
T Consensus 650 ekaaliqp~~~kwqlmiasc~rrsgnyq-ka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 650 EKAALIQPNQSKWQLMIASCFRRSGNYQ-KAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHhcCccHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHhCc
Confidence 7777777766555555666665554443 33446666665554
No 193
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.86 E-value=0.00073 Score=61.80 Aligned_cols=120 Identities=20% Similarity=0.268 Sum_probs=94.2
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
-+..+++.|...++.|+|.+|+..|+....-.+. .|....+.+.++.++++.++|+.|+...++=+.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPF------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3678999999999999999999999998754443 2234567889999999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHhcCC--------HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHH
Q psy4385 348 EPNNE---KAFFRRGNAYLDLNE--------PELAEKDFQKVLQIDPNNK---AAVQKLTQTKQKL 399 (473)
Q Consensus 348 ~p~~~---ka~~~~g~a~~~lg~--------~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~ 399 (473)
.|.++ -++|-+|.+++..=+ -.+|...|+..+..-|+.+ ++...+..+..++
T Consensus 101 yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L 166 (254)
T COG4105 101 YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL 166 (254)
T ss_pred CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH
Confidence 98765 578899999876422 3578899999999999975 3444444444433
No 194
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.84 E-value=0.00013 Score=74.97 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396 (473)
Q Consensus 317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 396 (473)
...+++.+|++|..+|++++|+.++++||+..|..+..|+.+|.+|...|++.+|...++.|-.+|+.|+-+........
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999887665555544
Q ss_pred HHHHHHHHH
Q psy4385 397 QKLREQKIK 405 (473)
Q Consensus 397 ~~~~~~~~~ 405 (473)
-+-++.+++
T Consensus 273 LRa~~~e~A 281 (517)
T PF12569_consen 273 LRAGRIEEA 281 (517)
T ss_pred HHCCCHHHH
Confidence 443333333
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.84 E-value=0.0002 Score=59.75 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~ 388 (473)
...+++.|...++.|+|..|++.++.+...-|-. ..|.+.++.+|+..++|++|+..+++.++++|.++.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 4567889999999999999999999999988764 5899999999999999999999999999999999765
No 196
>KOG4555|consensus
Probab=97.84 E-value=0.00023 Score=57.71 Aligned_cols=78 Identities=21% Similarity=0.193 Sum_probs=65.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHH
Q psy4385 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK----AAVQKLTQTKQK 398 (473)
Q Consensus 323 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~----~~~~~l~~~~~~ 398 (473)
..|......|+.+.|++.|.++|.+-|.++.+|.+|++++.-.|+.++|+.++.+|+++..... .++.+.+.++..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999999999999999999999999999975432 234455555555
Q ss_pred HH
Q psy4385 399 LR 400 (473)
Q Consensus 399 ~~ 400 (473)
+.
T Consensus 128 ~g 129 (175)
T KOG4555|consen 128 LG 129 (175)
T ss_pred hC
Confidence 43
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.83 E-value=0.00058 Score=63.65 Aligned_cols=79 Identities=15% Similarity=0.067 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH---HHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK---AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA---VQK 391 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k---a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~---~~~ 391 (473)
+..++..|..++..|+|++|+..+++++...|.... +.+.+|.+|+++++|++|+..+++.++++|+++.+ ...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 455778899999999999999999999999998764 45999999999999999999999999999998654 455
Q ss_pred HHHHH
Q psy4385 392 LTQTK 396 (473)
Q Consensus 392 l~~~~ 396 (473)
++.+.
T Consensus 112 ~g~~~ 116 (243)
T PRK10866 112 RGLTN 116 (243)
T ss_pred HHHhh
Confidence 55543
No 198
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.82 E-value=8.6e-05 Score=71.04 Aligned_cols=111 Identities=18% Similarity=0.117 Sum_probs=81.1
Q ss_pred chhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHhhhCCCCHHH
Q psy4385 277 TTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK--QAKPAKDQCDKAIELEPNNEKA 354 (473)
Q Consensus 277 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~~~p~~~ka 354 (473)
..+.+.++++.|.+.++..-++.+. .....+-.|.+.+..| .+..|.-.|++.....+.++..
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD---------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~ 203 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDED---------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKL 203 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCC---------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCc---------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHH
Confidence 3566778888888887776644321 1222223333444445 6999999999988888889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385 355 FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ 402 (473)
Q Consensus 355 ~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 402 (473)
+..++.|++.+|+|++|...+..|+..+|+++++..++..+...+++.
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999988887776655
No 199
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.80 E-value=0.00072 Score=53.80 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=78.7
Q ss_pred hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh-------
Q psy4385 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL------- 347 (473)
Q Consensus 275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------- 347 (473)
.|...+..|-|.+|...|.+|.......+ .++.-.-....+-||--|+-++..+|+|++++...+++|..
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP---~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIP---AEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCC---hHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 45566788999999999999997765432 22323445567889999999999999999999999999843
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 348 EPN----NEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 348 ~p~----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
+.+ ++.+.|+++.++..+|+.++|+..|+.+-+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 433 567889999999999999999999998854
No 200
>PRK11906 transcriptional regulator; Provisional
Probab=97.80 E-value=9e-05 Score=73.25 Aligned_cols=91 Identities=13% Similarity=0.007 Sum_probs=82.0
Q ss_pred cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385 282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA 361 (473)
Q Consensus 282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 361 (473)
...-.+|.+.-.+|+ ++++.++.++..+|.+....++++.|+..+++|+.++|+.+.+||.+|..
T Consensus 317 ~~~~~~a~~~A~rAv---------------eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 317 ELAAQKALELLDYVS---------------DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred hHHHHHHHHHHHHHH---------------hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 344566777777777 67778899999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385 362 YLDLNEPELAEKDFQKVLQIDPNNKA 387 (473)
Q Consensus 362 ~~~lg~~~~A~~~~~~al~l~P~~~~ 387 (473)
+...|+.++|++.+++|++++|.-..
T Consensus 382 ~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 382 HFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHcCCHHHHHHHHHHHhccCchhhH
Confidence 99999999999999999999997543
No 201
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.79 E-value=5.1e-05 Score=46.91 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
+.+++++|.+++++|+|++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999999986
No 202
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.78 E-value=0.00016 Score=69.60 Aligned_cols=111 Identities=12% Similarity=0.247 Sum_probs=90.4
Q ss_pred HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC---ChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF---EGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
......+..+|++++|..|+-.|..|+.++...... .......+.....-+...+..||+++++.+.|+.+.-+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 344456778899999999999999999988763221 12223344555566778999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
++|.+..-+++.|.|...+.+|.+|.+.+-.|.-
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987766643
No 203
>KOG0551|consensus
Probab=97.78 E-value=0.00027 Score=66.34 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN----NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392 (473)
Q Consensus 317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 392 (473)
.+.-|---|+-|++.++|..|+..|++.|...-. |+..|.||+.|.+.+|+|..|+.++.+|+.++|.+..++..-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 3455667789999999999999999999987533 556788999999999999999999999999999999988888
Q ss_pred HHHHHHHHH
Q psy4385 393 TQTKQKLRE 401 (473)
Q Consensus 393 ~~~~~~~~~ 401 (473)
+.|.-.+..
T Consensus 160 Akc~~eLe~ 168 (390)
T KOG0551|consen 160 AKCLLELER 168 (390)
T ss_pred hHHHHHHHH
Confidence 888777765
No 204
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.77 E-value=0.00037 Score=69.05 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 314 KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 314 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
.|....++...|..+++.++|+.|+..+++++.+.|++.++|+.++.+|..+|+|++|+..+..+--.
T Consensus 230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 44457788889999999999999999999999999999999999999999999999999777654433
No 205
>KOG4151|consensus
Probab=97.73 E-value=9.3e-05 Score=76.83 Aligned_cols=121 Identities=30% Similarity=0.457 Sum_probs=106.6
Q ss_pred CchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc--CChhHHH
Q psy4385 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL--KQAKPAK 338 (473)
Q Consensus 261 ~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl--~~~~~A~ 338 (473)
+....+..+...+..||.+|..++|..|.-.|..++.+++.+ +...+.++.|.+.|++.+ ++|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-----------~~~~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-----------HHVVATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-----------chhhhhHHHHHHHHHhhcCccchhhhc
Confidence 446667788899999999999999999999999999888743 445678899999998775 5999999
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385 339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392 (473)
Q Consensus 339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 392 (473)
..|+-|+...|...+++++++.+|..++.++-|++++.-....+|.+..+....
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif 167 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIF 167 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 999999999999999999999999999999999999999999999996655433
No 206
>KOG1156|consensus
Probab=97.67 E-value=0.00025 Score=71.92 Aligned_cols=124 Identities=18% Similarity=0.145 Sum_probs=99.1
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
++..+.+-..|..+...|+-++|...-..+++ .++-...||.-+|..+..-++|++||.+|..||
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr---------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLR---------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhc---------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 45566777788888888999999988888884 344456788888998888889999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385 346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKI 404 (473)
Q Consensus 346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 404 (473)
.++|+|...|+-++....++++|+-....-.+.|++.|.+...|..++...-.+..+..
T Consensus 103 ~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 103 KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888899999888888888888888887766666555554444433
No 207
>KOG1586|consensus
Probab=97.64 E-value=0.0012 Score=59.20 Aligned_cols=121 Identities=22% Similarity=0.280 Sum_probs=91.3
Q ss_pred HHHHhhcchhhhc-ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 270 KLLKERGTTYFKQ-DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 270 ~~~~~~G~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
..+..+|..|-.. .+++.|+.+|++|-.++..+ +....-..+++..|...-.+++|.+|+..|+++....
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555444 78999999999999887653 4455566788888888889999999999999998766
Q ss_pred CCCH------HH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHH
Q psy4385 349 PNNE------KA-FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV--QKLTQTKQKL 399 (473)
Q Consensus 349 p~~~------ka-~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~--~~l~~~~~~~ 399 (473)
-+|. |- ++..|.||+...+.-.|...+++..+++|.....+ ..|..+...+
T Consensus 185 ~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ai 244 (288)
T KOG1586|consen 185 LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAI 244 (288)
T ss_pred ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 5543 44 45778999999999999999999999999876543 3444444444
No 208
>PRK10941 hypothetical protein; Provisional
Probab=97.63 E-value=0.00069 Score=63.67 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390 (473)
Q Consensus 315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 390 (473)
......+.|+=.+|++.++|+.|+.+++.++.++|+++.-+.-||.+|.++|.+..|+.+|+..++.+|+++.+..
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3456778899999999999999999999999999999999888999999999999999999999999999987644
No 209
>KOG1130|consensus
Probab=97.60 E-value=0.00025 Score=68.30 Aligned_cols=125 Identities=16% Similarity=0.155 Sum_probs=94.3
Q ss_pred eccccccccccccCc------hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHH
Q psy4385 248 MNNFEKIKDTWQLNS------DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321 (473)
Q Consensus 248 L~~~~~~~~~~~~~~------~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
|.+|+.++.....-. -.+...-.++-++||++.-.|+|+.|+.+|++++.+.... .-...-+...
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel---------g~r~vEAQsc 278 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL---------GNRTVEAQSC 278 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh---------cchhHHHHHH
Confidence 566766554443322 1222333567789999999999999999999998654321 1123345667
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 322 LNAAMCLLKLKQAKPAKDQCDKAIELE------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 322 ~nla~~~~kl~~~~~A~~~~~~al~~~------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
+.+|+.|.-+.+|.+||.+..+-|.+- -....+++.+|.+|..+|+.+.|+....+.+++
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 789999999999999999999877663 235689999999999999999999998888776
No 210
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.00025 Score=67.95 Aligned_cols=141 Identities=18% Similarity=0.194 Sum_probs=91.1
Q ss_pred hHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385 264 EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK 343 (473)
Q Consensus 264 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 343 (473)
..-..+..+..-|+.|-..++|.+|...|.+|..+.... .....-...|.+.+.|+.+. ++.+|+.++++
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~---------~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~ 99 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL---------GDKFEAAKAYEEAANCYKKG-DPDEAIECYEK 99 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT---------T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence 334556777778888889999999999999998765431 11233456677777777665 88888888888
Q ss_pred HhhhC--CC----CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 344 AIELE--PN----NEKAFFRRGNAYLDL-NEPELAEKDFQKVLQIDPN--N----KAAVQKLTQTKQKLREQKIKEKQVY 410 (473)
Q Consensus 344 al~~~--p~----~~ka~~~~g~a~~~l-g~~~~A~~~~~~al~l~P~--~----~~~~~~l~~~~~~~~~~~~~~k~~~ 410 (473)
|+.+- .. -.+++.++|.+|... +++++|+..|++|+.+... . ......++.+...++++.++ ...|
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A-~~~~ 178 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA-IEIY 178 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH-HHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH-HHHH
Confidence 88762 12 246788888888888 8899999999888887321 1 12344555555555544433 3345
Q ss_pred HHHhh
Q psy4385 411 ANMFD 415 (473)
Q Consensus 411 ~~~f~ 415 (473)
.++-.
T Consensus 179 e~~~~ 183 (282)
T PF14938_consen 179 EEVAK 183 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 211
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.57 E-value=0.00042 Score=59.82 Aligned_cols=69 Identities=25% Similarity=0.318 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE----------PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ 402 (473)
Q Consensus 334 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 402 (473)
|+.|.+.++.+...+|.++.+++|.|-+++.+.+ +++|+.-|+.||.++|+...++..++.++..+...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999998754 46789999999999999999999999887766553
No 212
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.55 E-value=0.00012 Score=45.22 Aligned_cols=32 Identities=31% Similarity=0.622 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384 (473)
Q Consensus 353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~ 384 (473)
++|+.+|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46677777777777777777777777777764
No 213
>KOG4814|consensus
Probab=97.52 E-value=0.0033 Score=63.85 Aligned_cols=103 Identities=21% Similarity=0.260 Sum_probs=90.8
Q ss_pred HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP 349 (473)
Q Consensus 270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 349 (473)
..+.+.+..+|+..+|..|++.|...+++++.+ ..+...+....+++.||+++.+.+.|.+++.+|=+.||
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D---------~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD---------NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR 425 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch---------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 456678999999999999999999999988764 45566799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
.++-.-+..-++...-+.-++|+..+.+....
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99988888888888889999999888777654
No 214
>KOG0376|consensus
Probab=97.51 E-value=0.00011 Score=72.40 Aligned_cols=87 Identities=31% Similarity=0.189 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
+-+-|..+++-+.|+.|+..|.+||+++|+++..+-+|++++.+.++|-.|+.|+.+|++++|....++...+....++.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34667788899999999999999999999999999999999999999999999999999999998888777777776666
Q ss_pred HHHHHHH
Q psy4385 401 EQKIKEK 407 (473)
Q Consensus 401 ~~~~~~k 407 (473)
+..++-+
T Consensus 87 ~~~~A~~ 93 (476)
T KOG0376|consen 87 EFKKALL 93 (476)
T ss_pred HHHHHHH
Confidence 6555443
No 215
>KOG1127|consensus
Probab=97.47 E-value=0.00048 Score=73.06 Aligned_cols=114 Identities=13% Similarity=0.076 Sum_probs=100.4
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 350 (473)
.+..+|..+.+.+++..|+..|+-|+ ..+|....+|..+|.+|...|.|..|+..+++|..++|.
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsAL---------------R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSAL---------------RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHh---------------cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 34568999999999999999999999 556677899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
+.-+.|..+.....+|+|.+|+..+...+..-..-.....-|+.+..+.
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999999999887665556666666665544
No 216
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.46 E-value=0.00041 Score=66.35 Aligned_cols=92 Identities=22% Similarity=0.308 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy4385 283 DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAY 362 (473)
Q Consensus 283 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~ 362 (473)
.++..|...|++...-+ +..+.+++.+|.|++.+|+|++|...+.+|+..+|+++.++.++..+.
T Consensus 181 e~~~~A~y~f~El~~~~---------------~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKF---------------GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp TCCCHHHHHHHHHHCCS-----------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcc---------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 46899999999965322 224677889999999999999999999999999999999999999999
Q ss_pred HhcCCH-HHHHHHHHHHHhcCCCCHHHH
Q psy4385 363 LDLNEP-ELAEKDFQKVLQIDPNNKAAV 389 (473)
Q Consensus 363 ~~lg~~-~~A~~~~~~al~l~P~~~~~~ 389 (473)
..+|+. +.+.+.+.+....+|+++-+.
T Consensus 246 ~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 999998 667788888888999987653
No 217
>KOG0495|consensus
Probab=97.44 E-value=0.0015 Score=66.53 Aligned_cols=127 Identities=13% Similarity=0.059 Sum_probs=99.0
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCC---------hhHHHHHHHH---------HHHHHHHHHHHHHHcCChh
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE---------GEQETERKKT---------LTACHLNAAMCLLKLKQAK 335 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~~~~~---------~~~~~~nla~~~~kl~~~~ 335 (473)
..+..++..|+...|.....+|+...++....+ ..+-+....+ ...+|+.-+....-+++.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence 345667788888888888888887766522110 0011111222 2345666677777789999
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 336 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
+|++.|+++|+.-|+..|.|..+|+++..+++.+.|...|...++.+|+..-.+..|..+.++..
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998887664
No 218
>KOG0495|consensus
Probab=97.42 E-value=0.0017 Score=66.24 Aligned_cols=130 Identities=11% Similarity=0.039 Sum_probs=102.4
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK 353 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 353 (473)
...+.....++.++|++..++++ +..|....+|+.+|+.+-.+++.+.|...|..-++..|+.+.
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~l---------------k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEAL---------------KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHH---------------HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 34444455666677777777777 455678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy4385 354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAK 419 (473)
Q Consensus 354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~ 419 (473)
.|.-++..-...|..-.|...|.++.-.+|.|...+-..-++..+.+..++++. +..+.++.+.+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~-lmakALQecp~ 785 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL-LMAKALQECPS 785 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCc
Confidence 999999999999999999999999999999998877666555555444443333 44455555543
No 219
>KOG3785|consensus
Probab=97.35 E-value=0.0012 Score=62.49 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385 324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390 (473)
Q Consensus 324 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 390 (473)
+|-.++..-.|.+||+.|.++|.-+|+..-.-..++.||+++.-|+-+.+.+.-.|+..|+.+-+..
T Consensus 157 LAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 157 LASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 3333344444555555555555555555444445555555555555555555555555555554433
No 220
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.28 E-value=0.001 Score=45.58 Aligned_cols=40 Identities=30% Similarity=0.479 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR 358 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~ 358 (473)
.+++.+|..++++|+|..|..+++.+|+++|+|..|.--.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3678899999999999999999999999999999886443
No 221
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.27 E-value=0.00083 Score=59.46 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385 316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392 (473)
Q Consensus 316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 392 (473)
..+.+++.+|..|-.+|-+.-|.-+++++|.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-++.+.
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 45678889999999999999999999999999999999999999999999999999999999999999987665444
No 222
>KOG3364|consensus
Probab=97.27 E-value=0.0024 Score=52.24 Aligned_cols=83 Identities=14% Similarity=0.254 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHcCC---hhHHHHHHHHHhh-hCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385 317 LTACHLNAAMCLLKLKQ---AKPAKDQCDKAIE-LEPN-NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391 (473)
Q Consensus 317 ~~~~~~nla~~~~kl~~---~~~A~~~~~~al~-~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 391 (473)
.....+|+|.|+.+..+ ..+-+..++..+. -.|. .-..+|.++..++++++|+.|+.++...|+.+|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45678899999988764 5667888888886 4443 44788999999999999999999999999999999999876
Q ss_pred HHHHHHHH
Q psy4385 392 LTQTKQKL 399 (473)
Q Consensus 392 l~~~~~~~ 399 (473)
-..+..++
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 66666554
No 223
>KOG3824|consensus
Probab=97.27 E-value=0.0023 Score=59.49 Aligned_cols=78 Identities=26% Similarity=0.230 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 397 (473)
+-.+.|.-..+.|+.++|...+..|+.++|.++.++...|+....-++.-+|-.+|-+||.++|.|.++..+..+..-
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP 195 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence 445666777899999999999999999999999999999999999999999999999999999999998877665543
No 224
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.26 E-value=0.00046 Score=42.58 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
.+|+++|.+|.++|++++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999964
No 225
>KOG4507|consensus
Probab=97.25 E-value=0.0011 Score=66.61 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=94.5
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK 353 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 353 (473)
..|..+.-.|+...|+++..+|+...+.. .-....|+|++.++-+-...|-....++|.+....+-
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~--------------~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl 677 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQ--------------QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPL 677 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhh--------------hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch
Confidence 34556667899999999999999544321 1234679999999999999999999999999988899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385 354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397 (473)
Q Consensus 354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 397 (473)
.+|-.|.+|+.+.+.+.|++.|+.|+.++|++..+..-|..+..
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999999999999888877765
No 226
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=97.22 E-value=0.0015 Score=66.10 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=69.6
Q ss_pred CCCCCCeEEEEEEeeeCCeEEEe---ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCC
Q psy4385 162 TPKDGANVEITLKGECEGKVFQE---GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPS 238 (473)
Q Consensus 162 ~p~~~~~v~~~~~g~~~g~~~~~---~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~ 238 (473)
.+..|+.|+++|.|..+|..|++ .+..|.+|.+. +++||+.+|.+|+.|+...|.++....|+.... .
T Consensus 146 ~~~~gD~V~v~~~~~~dg~~~~~~~~~~~~~~lg~~~---~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~------~ 216 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFIDGEAFEGGKAENFSLELGSGQ---FIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL------A 216 (408)
T ss_pred ccCCCCEEEEEEEEEECCEECcCCCCCCeEEEECCCC---cchhHHHHhCCCCCCCeeEEEecCccccCcccC------C
Confidence 46789999999999889999886 47899999887 999999999999999999999986666654433 3
Q ss_pred CCCceeeeeeccccc
Q psy4385 239 NKPATYTITMNNFEK 253 (473)
Q Consensus 239 ~~~~~y~i~L~~~~~ 253 (473)
+....|.+.+..+..
T Consensus 217 gk~~~f~v~i~~I~~ 231 (408)
T TIGR00115 217 GKEATFKVTVKEVKE 231 (408)
T ss_pred CCeEEEEEEEEEecc
Confidence 567889999888765
No 227
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.14 E-value=0.00022 Score=44.10 Aligned_cols=28 Identities=18% Similarity=-0.024 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy4385 312 ERKKTLTACHLNAAMCLLKLKQAKPAKD 339 (473)
Q Consensus 312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~ 339 (473)
+++|.++.+|+|+|.+|...|++++|++
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 8888999999999999999999999863
No 228
>KOG2796|consensus
Probab=97.13 E-value=0.0077 Score=55.04 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHH
Q psy4385 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK---AAVQKLT 393 (473)
Q Consensus 317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~ 393 (473)
+...+.|.+..|+-.++|..|...+++++..||.++.+-.+.|.|++-+|+..+|++.++.++..+|... ....+|.
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~ 330 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLT 330 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHH
Confidence 4557788899999999999999999999999999999999999999999999999999999999999743 3444555
Q ss_pred HHHH
Q psy4385 394 QTKQ 397 (473)
Q Consensus 394 ~~~~ 397 (473)
.+++
T Consensus 331 tmyE 334 (366)
T KOG2796|consen 331 TMYE 334 (366)
T ss_pred HHHH
Confidence 5443
No 229
>PRK01490 tig trigger factor; Provisional
Probab=97.05 E-value=0.0027 Score=64.79 Aligned_cols=83 Identities=24% Similarity=0.405 Sum_probs=68.3
Q ss_pred CCCCCCeEEEEEEeeeCCeEEEe---ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCC
Q psy4385 162 TPKDGANVEITLKGECEGKVFQE---GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPS 238 (473)
Q Consensus 162 ~p~~~~~v~~~~~g~~~g~~~~~---~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~ 238 (473)
.+..|+.|+++|.|..+|..|++ .+..|.+|.+. +++|++.+|.+|+.|+...+.++....|..... .
T Consensus 157 ~~~~gD~V~vd~~~~~~g~~~~~~~~~~~~~~lg~~~---~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l------a 227 (435)
T PRK01490 157 PAENGDRVTIDFVGSIDGEEFEGGKAEDFSLELGSGR---FIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL------A 227 (435)
T ss_pred cCCCCCEEEEEEEEEECCEECcCCCCCceEEEEcCCC---cchhHHHHhCCCCCCCeeEEEecCccccccccC------C
Confidence 46889999999999999999876 47899999987 999999999999999999998875555544332 3
Q ss_pred CCCceeeeeeccccc
Q psy4385 239 NKPATYTITMNNFEK 253 (473)
Q Consensus 239 ~~~~~y~i~L~~~~~ 253 (473)
+....|.+.+..+..
T Consensus 228 gk~~~f~v~v~~V~~ 242 (435)
T PRK01490 228 GKEATFKVTVKEVKE 242 (435)
T ss_pred CCeEEEEEEEEEecc
Confidence 456789999888765
No 230
>KOG3785|consensus
Probab=97.04 E-value=0.0034 Score=59.60 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=68.6
Q ss_pred hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385 279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR 358 (473)
Q Consensus 279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~ 358 (473)
+..+.+|..|+...+-.+.... +++ ..+-.-+|.|++++|+|++|+..|+-+.+.+..+.+.+.++
T Consensus 32 fls~rDytGAislLefk~~~~~-------EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnL 97 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDR-------EEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNL 97 (557)
T ss_pred HHhcccchhHHHHHHHhhccch-------hhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhH
Confidence 4567888889888777763211 111 33455689999999999999999999999888888999999
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q psy4385 359 GNAYLDLNEPELAEKDFQKV 378 (473)
Q Consensus 359 g~a~~~lg~~~~A~~~~~~a 378 (473)
+.|++-+|.|.+|...-.+|
T Consensus 98 Acc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999998766554
No 231
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.00 E-value=0.0054 Score=63.26 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 396 (473)
..+++-.+.++...|++++|+++..+.-..-.+....+-.+|.+++.+|++++|...|...+..+|+|..-+..|..+.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3466677888899999999999999988888888999999999999999999999999999999999999888888876
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.00 E-value=0.0043 Score=56.81 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388 (473)
Q Consensus 317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~ 388 (473)
-+.-+++-|+..++.|+|++|+..++.+....|.. .++.+.++.++++.++|++|+..+++.+++.|.++.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 35678899999999999999999999999988765 4899999999999999999999999999999998765
No 233
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.99 E-value=0.0011 Score=40.39 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385 354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385 (473)
Q Consensus 354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~ 385 (473)
|+|++|.++..+|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777777777777777777777777776653
No 234
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.98 E-value=0.024 Score=54.81 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=105.7
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD 342 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 342 (473)
..+...+....+.|..-+..|+|.+|.+...++-+. .+....+|.--|.+.-.+|+++.|-.+..
T Consensus 78 ~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~---------------~e~p~l~~l~aA~AA~qrgd~~~an~yL~ 142 (400)
T COG3071 78 RRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEH---------------GEQPVLAYLLAAEAAQQRGDEDRANRYLA 142 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc---------------CcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 345567778888899999999999999999987733 23345566667778889999999999999
Q ss_pred HHhhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385 343 KAIELEP-NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406 (473)
Q Consensus 343 ~al~~~p-~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 406 (473)
++-+..+ ++.-.+..++..+...|++..|...+..+++..|.++.+.....+++...+...+-.
T Consensus 143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll 207 (400)
T COG3071 143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALL 207 (400)
T ss_pred HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHH
Confidence 9999944 455677889999999999999999999999999999999888888887776665443
No 235
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.97 E-value=0.023 Score=51.74 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=75.8
Q ss_pred cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC-------hhHHHHHHHHHhhhC
Q psy4385 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ-------AKPAKDQCDKAIELE 348 (473)
Q Consensus 276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~-------~~~A~~~~~~al~~~ 348 (473)
+..+-....++.|+..|.-|+-...... .-....+.+++.+|.+|..+++ +..|++.|.+|++..
T Consensus 84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~--------~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 84 PRDFSGERTLEEAIESYKLALLCAQIKK--------EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3366677789999999999995543211 1122567889999999999988 455666666666554
Q ss_pred CC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385 349 PN------NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384 (473)
Q Consensus 349 p~------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~ 384 (473)
.. ....+|.+|..+.++|++++|+..|.+++..--.
T Consensus 156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 22 3578999999999999999999999999975433
No 236
>KOG1308|consensus
Probab=96.95 E-value=0.00036 Score=65.82 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=64.0
Q ss_pred HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ 402 (473)
Q Consensus 327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 402 (473)
-.+..|.++.|+++|..++.++|.....|-.|+.++++++....|+++|..|++++|+...-+...+.+...+...
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 3456788999999999999999999999999999999999999999999999999999776555444444444433
No 237
>KOG4340|consensus
Probab=96.89 E-value=0.0066 Score=56.42 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=71.2
Q ss_pred hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHH
Q psy4385 280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRG 359 (473)
Q Consensus 280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g 359 (473)
.+..+|..||+...--. +..|.+...++-+|.||+...+|..|..+|++...+.|...+..+..+
T Consensus 21 I~d~ry~DaI~~l~s~~---------------Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A 85 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSEL---------------ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA 85 (459)
T ss_pred HHHhhHHHHHHHHHHHH---------------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 45566777776655444 445556778889999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q psy4385 360 NAYLDLNEPELAEKDFQKVL 379 (473)
Q Consensus 360 ~a~~~lg~~~~A~~~~~~al 379 (473)
+.+++.+.|.+|++......
T Consensus 86 QSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHhcccHHHHHHHHHhc
Confidence 99999999999998876654
No 238
>KOG2376|consensus
Probab=96.83 E-value=0.013 Score=59.33 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=77.4
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC----------Ch--hH---HHHHHH---HHHHHHHHHHHHHHHcC
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF----------EG--EQ---ETERKK---TLTACHLNAAMCLLKLK 332 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~----------~~--~~---~~~~~~---~~~~~~~nla~~~~kl~ 332 (473)
.+...-|.+-..++|++|.....+.+...+.+... .+ ++ ..+.++ ......+..|.|+++++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 44445566778888999998888888765542210 00 11 001111 12223367888999999
Q ss_pred ChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388 (473)
Q Consensus 333 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~ 388 (473)
..++|+..++ -+++...+.+.-+|+.++++++|++|+..|+..++-+-++.+.
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 9999888887 5666677888888999999999999998888887765554443
No 239
>KOG2396|consensus
Probab=96.81 E-value=0.03 Score=55.79 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHh
Q psy4385 285 FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLD 364 (473)
Q Consensus 285 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~ 364 (473)
..+-...|++|..-++ .+..+|++......+.+.|.+--..|.++|..+|+++..|...|.=.+.
T Consensus 87 ~~rIv~lyr~at~rf~---------------~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe 151 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFN---------------GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE 151 (568)
T ss_pred HHHHHHHHHHHHHhcC---------------CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHh
Confidence 3445567888884333 3577888888777788889999999999999999999999999888888
Q ss_pred cCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 365 LNE-PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQV 409 (473)
Q Consensus 365 lg~-~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~ 409 (473)
.+. .+.|.+.|.++|+.+|+++.++...-++.-........+++.
T Consensus 152 ~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~ 197 (568)
T KOG2396|consen 152 INLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREE 197 (568)
T ss_pred hccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 999999999999999999999887766655544444444443
No 240
>KOG4340|consensus
Probab=96.78 E-value=0.013 Score=54.60 Aligned_cols=133 Identities=20% Similarity=0.175 Sum_probs=93.6
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh--
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI-- 345 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al-- 345 (473)
.-..+.-+|.+|+...+|..|..+|++.- .+.|......+.-|+.+++.+.|..|+.......
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~---------------ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~ 107 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLG---------------QLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN 107 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 34456678999999999999999999988 4455555666666677777776666665543322
Q ss_pred ----------------------------hhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385 346 ----------------------------ELEP--NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395 (473)
Q Consensus 346 ----------------------------~~~p--~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 395 (473)
+.-| +.+....+.|-..++-|+|++|++-|+.|++...-++-..+.++.+
T Consensus 108 ~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa 187 (459)
T KOG4340|consen 108 PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA 187 (459)
T ss_pred HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH
Confidence 1123 4456677888888899999999999999999888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy4385 396 KQKLREQKIKEKQVYANMFDK 416 (473)
Q Consensus 396 ~~~~~~~~~~~k~~~~~~f~~ 416 (473)
..+.+++..+-+ ....+.++
T Consensus 188 Hy~~~qyasALk-~iSEIieR 207 (459)
T KOG4340|consen 188 HYSSRQYASALK-HISEIIER 207 (459)
T ss_pred HHhhhhHHHHHH-HHHHHHHh
Confidence 766555544433 33344433
No 241
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.72 E-value=0.0024 Score=37.88 Aligned_cols=31 Identities=42% Similarity=0.745 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385 354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384 (473)
Q Consensus 354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~ 384 (473)
+++++|.++..++++++|+..|.+++.++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666655554
No 242
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.016 Score=50.70 Aligned_cols=104 Identities=18% Similarity=0.126 Sum_probs=79.4
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
......++..++..++++.|+...+.++..-. -..+...+-.++|.+++.+++++.|+...+..-.-+
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~ 156 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK------------DENLKALAALRLARVQLQQKKADAALKTLDTIKEES 156 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccch------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence 34455678889999999999999999984321 123456677899999999999999998765543322
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385 (473)
Q Consensus 349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~ 385 (473)
-. +-.--.+|.++...|+-++|+..|.+|+..++++
T Consensus 157 w~-~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 157 WA-AIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HH-HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 11 1224579999999999999999999999998554
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.71 E-value=0.037 Score=49.39 Aligned_cols=95 Identities=26% Similarity=0.382 Sum_probs=51.7
Q ss_pred hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC-CHHHHH
Q psy4385 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN-NEKAFF 356 (473)
Q Consensus 278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~-~~ka~~ 356 (473)
.++..+++..|+..|.+++...+. .......+..++..+...+++..|+..+.+++...+. ...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 455555566666666555431110 0012333334444455556666666666666666666 466666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385 357 RRGNAYLDLNEPELAEKDFQKVLQIDPN 384 (473)
Q Consensus 357 ~~g~a~~~lg~~~~A~~~~~~al~l~P~ 384 (473)
.++.++...+.++.|+..+..++...|.
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 6666666666666666666666666655
No 244
>KOG2376|consensus
Probab=96.68 E-value=0.013 Score=59.31 Aligned_cols=112 Identities=10% Similarity=0.031 Sum_probs=68.5
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK 353 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 353 (473)
+.+.++|+.+..++|+..++ .+ +++...+..-+|+.++++++|++|++.|...++.+.++..
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-~~-----------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-GL-----------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-cc-----------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 55566667777777777666 22 2233557778899999999999999999999998887776
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-NKAAVQKLTQTKQKLREQKIKEK 407 (473)
Q Consensus 354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~-~~~~~~~l~~~~~~~~~~~~~~k 407 (473)
...+.... ...-.. .+ . +.+.....|. .-+..++.+-+....+++.++..
T Consensus 146 ~~~r~nl~-a~~a~l-~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~e 196 (652)
T KOG2376|consen 146 EERRANLL-AVAAAL-QV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIE 196 (652)
T ss_pred HHHHHHHH-HHHHhh-hH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHH
Confidence 65443322 111000 01 1 3344444454 33455666666655566665554
No 245
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.66 E-value=0.02 Score=44.22 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHHHHH
Q psy4385 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN--KAAVQKLTQTKQKLREQKIKE 406 (473)
Q Consensus 337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~~~~~~~~ 406 (473)
.+..+.++++.+|++..+.|.+|.++...|++++|++.|-.+++.+|+. ..++..+-.+-..++.....-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv 78 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLV 78 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHH
Confidence 4667888999999999999999999999999999999999999999865 567777777766666554433
No 246
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.64 E-value=0.0032 Score=39.47 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy4385 355 FFRRGNAYLDLNEPELAEKDFQKVL 379 (473)
Q Consensus 355 ~~~~g~a~~~lg~~~~A~~~~~~al 379 (473)
|.++|.+|..+|+|++|+..|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.59 E-value=0.039 Score=49.22 Aligned_cols=118 Identities=24% Similarity=0.232 Sum_probs=80.1
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHcCChhHHHHHHHHHhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM-CLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-~~~kl~~~~~A~~~~~~al~ 346 (473)
....+...|..+...+++..|+..+..++...... .......+. ++...++++.|+..+.+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDP---------------DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455566666667777777777777777433321 122223333 78888888888888888888
Q ss_pred hCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Q psy4385 347 LEP---NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-NKAAVQKLTQTKQKLR 400 (473)
Q Consensus 347 ~~p---~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~-~~~~~~~l~~~~~~~~ 400 (473)
.+| .....++.++..+...++++.|+..+.+++...|. .......+..+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 776 45666777777778888888888888888888888 4666666666655443
No 248
>KOG3081|consensus
Probab=96.57 E-value=0.041 Score=50.61 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHc----CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385 320 CHLNAAMCLLKL----KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395 (473)
Q Consensus 320 ~~~nla~~~~kl----~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 395 (473)
.++.||.++.++ .++..|.-.|+..-+.-|..+..+...+.|++.+++|++|...++.||.-++++++...++-.+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 344566666654 3688899999998887778899999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHH
Q psy4385 396 KQKLREQKI 404 (473)
Q Consensus 396 ~~~~~~~~~ 404 (473)
...+++-.+
T Consensus 251 a~~~Gkd~~ 259 (299)
T KOG3081|consen 251 ALHLGKDAE 259 (299)
T ss_pred HHHhCCChH
Confidence 766655433
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.56 E-value=0.0038 Score=39.12 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
+|.++|.+|.++|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999996655
No 250
>KOG2471|consensus
Probab=96.53 E-value=0.0066 Score=59.98 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=87.5
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh-h--
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE-L-- 347 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~-~-- 347 (473)
.+.-..+.+|-.|+|.+|.+.....-.........+. +-....+++|+|..+++++.|..++.+|.+||+ .
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~------q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITP------QLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccc------hhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 3444455666677777776665443211111000011 112344568999999999999999999999996 1
Q ss_pred ------CC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 348 ------EP---------NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 348 ------~p---------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
.| .....+|+.|..|+..|+.-.|.++|.++...-..|+.+|-.|+.|...-
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 11 23468999999999999999999999999999999999999999886443
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.53 E-value=0.014 Score=59.99 Aligned_cols=104 Identities=21% Similarity=0.244 Sum_probs=83.7
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
+.+--+...|..+..+|+.+.|+..|++++..- .+.......+++.+|.|++-+.+|++|..++.+.++
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQ-----------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch-----------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 344456678888999999999999999998321 145667788999999999999999999999999998
Q ss_pred hCCCCHHHHH--HHHHHHHhcCCH-------HHHHHHHHHHHhcC
Q psy4385 347 LEPNNEKAFF--RRGNAYLDLNEP-------ELAEKDFQKVLQID 382 (473)
Q Consensus 347 ~~p~~~ka~~--~~g~a~~~lg~~-------~~A~~~~~~al~l~ 382 (473)
.+ .+.+++| -.|.|+..+++. ++|...|.++-.+-
T Consensus 334 ~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 334 ES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred cc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 54 4566654 578999999999 88888888776554
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.042 Score=51.37 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=81.5
Q ss_pred HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH--------
Q psy4385 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK-------- 343 (473)
Q Consensus 272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~-------- 343 (473)
....+..+...+++..|...|..++ ...+.+..+..-+|.||+..|+.+.|...+..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al---------------~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~ 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQAL---------------QAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHH---------------HhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh
Confidence 3446777889999999999999999 44455577788889999998888666554433
Q ss_pred --------------------------HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q psy4385 344 --------------------------AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN--NKAAVQKLTQT 395 (473)
Q Consensus 344 --------------------------al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~ 395 (473)
.+..||++..+-+.++..|...|++++|+..|-..++.|-. +..++..|-.+
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~ 281 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLEL 281 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 11336778888888888888888888888877777776542 34555555555
Q ss_pred HHHHH
Q psy4385 396 KQKLR 400 (473)
Q Consensus 396 ~~~~~ 400 (473)
...+.
T Consensus 282 f~~~g 286 (304)
T COG3118 282 FEAFG 286 (304)
T ss_pred HHhcC
Confidence 54444
No 253
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.47 E-value=0.0049 Score=37.41 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
+++++|.|+.++|++++|+..+++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67899999999999999999999999999874
No 254
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.45 E-value=0.0043 Score=55.46 Aligned_cols=61 Identities=26% Similarity=0.447 Sum_probs=56.7
Q ss_pred HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387 (473)
Q Consensus 327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~ 387 (473)
...+.++.+.|.+.|++++.+-|.+...|+|+|....+.|+++.|.+.|.+.|+++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3456789999999999999999999999999999999999999999999999999998753
No 255
>KOG1941|consensus
Probab=96.41 E-value=0.018 Score=55.08 Aligned_cols=136 Identities=23% Similarity=0.225 Sum_probs=96.0
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC--------C-------Chh-------------HHHHHHHHHHHH
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG--------F-------EGE-------------QETERKKTLTAC 320 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~--------~-------~~~-------------~~~~~~~~~~~~ 320 (473)
+..+.+.|..++...++.+|+..+.+.+..+..... . +.+ -..+-......+
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888888888777765443100 0 000 001122345678
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH------HH
Q psy4385 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE-----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA------AV 389 (473)
Q Consensus 321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~-----ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~------~~ 389 (473)
+.|++..+-++.+|.+++.++.-.+.+....+ .++..+|.|+..++.|+.+++.|+.|+++..++.+ +.
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 99999999999999999999999998754333 67788999999999999999999999998765543 34
Q ss_pred HHHHHHHHHHHHHHH
Q psy4385 390 QKLTQTKQKLREQKI 404 (473)
Q Consensus 390 ~~l~~~~~~~~~~~~ 404 (473)
..|+.+...++...+
T Consensus 166 v~Lgslf~~l~D~~K 180 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEK 180 (518)
T ss_pred hhHHHHHHHHHhhhH
Confidence 455666555554443
No 256
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.40 E-value=0.0049 Score=36.47 Aligned_cols=33 Identities=36% Similarity=0.468 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
.+++++|.++..+++++.|+..+.+++.++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998863
No 257
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.038 Score=51.27 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV 389 (473)
Q Consensus 315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~ 389 (473)
........|+=..++..++++.|..+.++.+.++|.++.-+--+|.+|.++|.+.-|+.++...++..|+++.+.
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 345667778888899999999999999999999999999999999999999999999999999999999987653
No 258
>KOG2053|consensus
Probab=96.27 E-value=0.07 Score=56.75 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=87.2
Q ss_pred hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385 279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR 358 (473)
Q Consensus 279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~ 358 (473)
....++|..|++...+.+ ...|....+..--|..+.++|.+++|..+.+..-...+++...+--+
T Consensus 19 ~ld~~qfkkal~~~~kll---------------kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l 83 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLL---------------KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFL 83 (932)
T ss_pred HhhhHHHHHHHHHHHHHH---------------HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHH
Confidence 345688889999888888 44555566667778899999999999965555555567777888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 359 GNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK 407 (473)
Q Consensus 359 g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 407 (473)
-.||..++++++|...|++++..+|+ ......+-.++.+...+.+.++
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 6666666666555554444433
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.17 E-value=0.25 Score=41.89 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=64.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhhCC----------CC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 323 NAAMCLLKLKQAKPAKDQCDKAIELEP----------NN------------EKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 323 nla~~~~kl~~~~~A~~~~~~al~~~p----------~~------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
..|......++...++..+.+++.+-. .+ ..++.+++.++...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 345555667888899999999987631 11 25667788889999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 381 IDPNNKAAVQKLTQTKQKLREQKIKEK 407 (473)
Q Consensus 381 l~P~~~~~~~~l~~~~~~~~~~~~~~k 407 (473)
++|-+..++..+-.++...++..++.+
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~ 117 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALR 117 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999988877665544
No 260
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.17 E-value=0.032 Score=60.73 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
..|..+...+...|+++.|...+++++.++|+++..|..++.+|...|++++|.+.++...+
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34556666666677777777777777777777666677777777777777777776665543
No 261
>KOG1941|consensus
Probab=96.15 E-value=0.034 Score=53.19 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=78.2
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 350 (473)
.+..+|+++...+.|++++..|+.|+++.....+.. +-..++..++-.+-++.+|++|+-+..+|+++-.+
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~---------LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM---------LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce---------eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence 444588999999999999999999998876543322 22456778888888888899888888888766321
Q ss_pred ------C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 351 ------N----EKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 351 ------~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
+ .-++|+++.++..+|+.-+|.++++.|.++
T Consensus 195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 1 246788888888889888888888888665
No 262
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.14 E-value=0.19 Score=47.93 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=89.9
Q ss_pred ccCchhHHHhhHHHHhhcchhhhcc-cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Q psy4385 259 QLNSDEKLEQGKLLKERGTTYFKQD-KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPA 337 (473)
Q Consensus 259 ~~~~~~~~~~a~~~~~~G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A 337 (473)
.+++......+..+++.|..+++++ +|..|+...++|.++++... ...........+...++..++.+|+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~-~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG-KMDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh-hccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 5577777889999999999999999 99999999999999975421 011111244567888999999999999887644
Q ss_pred HHHHHHHh----hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy4385 338 KDQCDKAI----ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383 (473)
Q Consensus 338 ~~~~~~al----~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P 383 (473)
.. |..++ ..-|+.+..++-.=.++.+.++.+++.+.+.+.+.--+
T Consensus 104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 33 44433 33566666664555555558889999999988887543
No 263
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.017 Score=58.34 Aligned_cols=80 Identities=25% Similarity=0.416 Sum_probs=64.2
Q ss_pred CCCCCeEEEEEEeeeCCeEEEe---ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEe--cCCCCCCCCCCCCCCCC
Q psy4385 163 PKDGANVEITLKGECEGKVFQE---GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFV--QPQHLWSGKGNDKLGVP 237 (473)
Q Consensus 163 p~~~~~v~~~~~g~~~g~~~~~---~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i--~~~~~~~~~g~~~~~ip 237 (473)
...|+.|+|.|.|..+|..|.+ .++.+.||.+. .+||++.+|-+|+.|+...|.+ |..|.-...
T Consensus 158 a~~gD~v~IDf~g~iDg~~fegg~ae~~~l~lGs~~---fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-------- 226 (441)
T COG0544 158 AENGDRVTIDFEGSVDGEEFEGGKAENFSLELGSGR---FIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-------- 226 (441)
T ss_pred cccCCEEEEEEEEEEcCeeccCccccCeEEEEcCCC---chhhHHhhhccCcCCCeeEEEEEcccccchhHh--------
Confidence 7789999999999999999987 47899999998 9999999999999999987544 444433321
Q ss_pred CCCCceeeeeeccccc
Q psy4385 238 SNKPATYTITMNNFEK 253 (473)
Q Consensus 238 ~~~~~~y~i~L~~~~~ 253 (473)
.+....|.+.+..+..
T Consensus 227 aGK~a~F~V~vkeVk~ 242 (441)
T COG0544 227 AGKEATFKVKVKEVKK 242 (441)
T ss_pred CCCceEEEEEEEEEee
Confidence 2245788888877755
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.09 E-value=0.063 Score=53.73 Aligned_cols=107 Identities=19% Similarity=0.081 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCC------hhHHHHH----HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC--C
Q psy4385 284 KFELACRNYKKAIPYLDFDGGFE------GEQETER----KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN--N 351 (473)
Q Consensus 284 ~~~~A~~~y~~al~~~~~~~~~~------~~~~~~~----~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~--~ 351 (473)
-..+|...|++|++.-+..-..+ ....... -....-+...+|+|..++|+.++|++.+...++..|. +
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 35788888888887654421110 0000111 1123456678999999999999999999999988775 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHH
Q psy4385 352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQI-DPNNKAAVQ 390 (473)
Q Consensus 352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-~P~~~~~~~ 390 (473)
...++++-.+++.++.|+++.+.+.+.=.+ -|....+-+
T Consensus 295 l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 295 LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence 678999999999999999999999886433 244444433
No 265
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.09 E-value=0.065 Score=51.96 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=89.3
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
.......+..+...|++++|......+++-.-. + .++. =.-.++.+++..=++..++.+...
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-------------~---~L~~--~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-------------P---RLCR--LIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-------------h---hHHH--HHhhcCCCCchHHHHHHHHHHHhC
Confidence 444444556677888999999998888843221 1 1111 122357889999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406 (473)
Q Consensus 349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 406 (473)
|+++..++.+|..+++.+.|.+|...|+.|+...|+. ..+..++.+..++++-..++
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAE 381 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHH
Confidence 9999999999999999999999999999999998874 45677777777665554443
No 266
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.08 E-value=0.057 Score=51.58 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=81.4
Q ss_pred cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHhhhCCCCHHH
Q psy4385 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK-LKQAKPAKDQCDKAIELEPNNEKA 354 (473)
Q Consensus 276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~~p~~~ka 354 (473)
.+...+.+..+.|...|.+|.+.. .....+|...|..-++ .++.+.|...|+.+++.-|.+...
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~---------------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~ 72 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDK---------------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC---------------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHhCChHHHHHHHHHHHcCC---------------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 344445555888999999998321 1235578888888666 567777999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHH
Q psy4385 355 FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK---AAVQKLTQTKQKLR 400 (473)
Q Consensus 355 ~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~ 400 (473)
|......+..+++.+.|...|++++..-|... .++...-....+.+
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999877765 34554444444443
No 267
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.86 E-value=0.1 Score=58.66 Aligned_cols=65 Identities=18% Similarity=0.082 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEP--------NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p--------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 382 (473)
..++.++|.+++..|+++.|...+.+++.+-. ...-.+..+|.++...|++++|...+.+++.+.
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 34667888899999999999999998887621 122345577888888999999999999988764
No 268
>KOG1915|consensus
Probab=95.82 E-value=0.17 Score=50.36 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=55.6
Q ss_pred hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHH------------------------------
Q psy4385 280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL------------------------------ 329 (473)
Q Consensus 280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~------------------------------ 329 (473)
....+.+.+...|+.+|++++.... ..+.+++-.|...+
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkF-----------tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKF-----------TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE 445 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccc-----------hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence 3567888999999999998886322 22333333333333
Q ss_pred ---HcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 330 ---KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 330 ---kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
++++++.|...|++-|+..|.|..+|...|..-..+|+.+.|.+.|..|+.
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 455666666666666666666666666666666666666666666665554
No 269
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.71 E-value=0.16 Score=44.25 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhh-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIE-LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN--KAAVQKLTQ 394 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~-~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~ 394 (473)
..-.+.+|.....+|++.+|..+|.+++. +-.+++..+..++++.+.++++.+|...++...+-+|.- ++-.-.+++
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 44567899999999999999999999985 456788899999999999999999999999999998864 333445555
Q ss_pred HHHHHHHHH
Q psy4385 395 TKQKLREQK 403 (473)
Q Consensus 395 ~~~~~~~~~ 403 (473)
.+..+++..
T Consensus 169 ~laa~g~~a 177 (251)
T COG4700 169 TLAAQGKYA 177 (251)
T ss_pred HHHhcCCch
Confidence 555554444
No 270
>KOG1585|consensus
Probab=95.70 E-value=0.1 Score=47.36 Aligned_cols=100 Identities=20% Similarity=0.189 Sum_probs=61.7
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh----hhC-
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI----ELE- 348 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al----~~~- 348 (473)
+.+....+.-+.+.|+..|++++.++..+ .....-..++...+..+.+++.|.+|-..+.+-. +.+
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~---------dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEED---------DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 34444556667777777777777665532 2233445566677777788888887776665532 223
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385 349 -PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382 (473)
Q Consensus 349 -p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 382 (473)
+.-.+++...-.+|+...+|..|..+++...++.
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 2333555555566666678888888887766653
No 271
>KOG2796|consensus
Probab=95.66 E-value=0.18 Score=46.40 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=95.0
Q ss_pred HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh----hh
Q psy4385 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI----EL 347 (473)
Q Consensus 272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al----~~ 347 (473)
.+...+.+...+.|.-....|.+.++..+ +..+.+...++...++.|+-+.|..+++++- .+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~--------------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL 245 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYP--------------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL 245 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCC--------------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence 44566777888999999999999985332 3457788889999999999999999998553 33
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 348 EP--NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK 407 (473)
Q Consensus 348 ~p--~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 407 (473)
+. .+.-.+.+.+.+|...++|.+|...|.++++.||.++.+.+.-+.|..-+++..++-|
T Consensus 246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH
Confidence 32 3445667788888889999999999999999999999887777777666655555444
No 272
>KOG1585|consensus
Probab=95.63 E-value=0.46 Score=43.34 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=81.2
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh-
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL- 347 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~- 347 (473)
+..+..-++.+...++|++|..+..+|++..+.... --.-+..|-..|+....+..+.++...+++|..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs---------lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS---------LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344445566677788999999999999966554221 1123456666777777788888888888888766
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHH---HHHHHHHHHHHHHHHHH
Q psy4385 348 ----EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAV---QKLTQTKQKLREQKIKE 406 (473)
Q Consensus 348 ----~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~---~~~~---~~l~~~~~~~~~~~~~~ 406 (473)
.|+-+-.-.-++-=..+.-+.++|+..|++++.+-.++ ..+. ...++++-++++..+..
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 24444333444444456677888888888888764433 2222 23344455555555543
No 273
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.58 E-value=0.046 Score=43.44 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=64.1
Q ss_pred hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-----------ChhHHHHHHHH
Q psy4385 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-----------QAKPAKDQCDK 343 (473)
Q Consensus 275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-----------~~~~A~~~~~~ 343 (473)
++..+|.+|++.+|++..+..+..-..... ...++.-.|..+.++. -.-.|++.+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~------------~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~ 69 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES------------SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSR 69 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc------------hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHH
Confidence 456789999999999999999844332110 0123333344433322 23457788888
Q ss_pred HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385 344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382 (473)
Q Consensus 344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 382 (473)
+..+.|..+..+|.+|.=+-....|+++..-.+++|.+.
T Consensus 70 a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 70 AVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 888888888888888877666777888888877777653
No 274
>KOG1915|consensus
Probab=95.52 E-value=0.31 Score=48.47 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=87.9
Q ss_pred HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
+...|.---.++++..|...|++|| ..+..+..+++..|-+-++.++...|....++|+.+-|.-
T Consensus 76 WikYaqwEesq~e~~RARSv~ERAL---------------dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERAL---------------DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH---------------hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 3444555567888999999999999 4455678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385 352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386 (473)
Q Consensus 352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~ 386 (473)
-+.||..-..-..+|+.+-|...|.+=+...|+..
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence 99999999999999999999999999999999743
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.51 E-value=0.2 Score=44.14 Aligned_cols=103 Identities=18% Similarity=0.118 Sum_probs=78.4
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
.....+..+|.-|++.|+++.|++.|.++...... .......++++-.+.+..++|..+..+.++|-.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34567889999999999999999999998865432 334567788888888999999999999999866
Q ss_pred hCC--CCH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 347 LEP--NNE--K--AFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 347 ~~p--~~~--k--a~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
+-. .+. + .--..|.+++..++|..|...|-.+..-
T Consensus 102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 532 222 2 2223477778889999999888766543
No 276
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.46 E-value=0.1 Score=58.52 Aligned_cols=100 Identities=10% Similarity=-0.034 Sum_probs=79.0
Q ss_pred HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC-
Q psy4385 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN- 350 (473)
Q Consensus 272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~- 350 (473)
....|..++..|++..|...+.+++...+.. .......++.++|.++...|+++.|...+.+++.....
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLT----------WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc----------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 3346777889999999999999998653321 11223456788999999999999999999999976322
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 351 -----NEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 351 -----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
...++.++|.+++..|++++|...+.+++.+
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1346778899999999999999999999886
No 277
>KOG1586|consensus
Probab=95.34 E-value=0.17 Score=45.75 Aligned_cols=110 Identities=17% Similarity=0.133 Sum_probs=75.2
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHhhh
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK-LKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~ 347 (473)
+..+.+-+| .|+..+..+|+++.++||.++..... -..-+..+..+|-.|-. +.++++||.+|++|-+.
T Consensus 74 at~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Gr---------f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 74 ATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGR---------FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhH---------HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333333333 45667888999999999877653211 11223344455655543 47899999999999755
Q ss_pred C------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385 348 E------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388 (473)
Q Consensus 348 ~------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~ 388 (473)
- ..--|++...+.--..+++|.+|+..|+++..-.-+|+-.
T Consensus 144 yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 144 YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 3 2233778888888888999999999999998877666543
No 278
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=0.65 Score=40.96 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=89.9
Q ss_pred hcchhhhccc---HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHH------HHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 275 RGTTYFKQDK---FELACRNYKKAIPYLDFDGGFEGEQETERKKTL------TACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 275 ~G~~~~~~~~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~------~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
.|-.|++..+ ...|-..|.+++.......+......+.+...+ ...-+.+|..+...+++++|+...+.++
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4555655544 447888999999877654443333333333333 2234566777888999999999999999
Q ss_pred hhCC-CCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4385 346 ELEP-NNEKA--FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV-QKLTQTKQKLREQKIKEKQVYANMFDKF 417 (473)
Q Consensus 346 ~~~p-~~~ka--~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~-~~l~~~~~~~~~~~~~~k~~~~~~f~~~ 417 (473)
..-. .+.++ -.|++.++..++.+++|+..+.... +++-.... ...+.+...++ ..+..+..|++.....
T Consensus 117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg-~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKG-DKQEARAAYEKALESD 189 (207)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcC-chHHHHHHHHHHHHcc
Confidence 6543 34444 4699999999999999999887554 22222322 33445554443 3345566777776655
No 279
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.26 E-value=0.32 Score=54.98 Aligned_cols=26 Identities=4% Similarity=-0.082 Sum_probs=14.0
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHh
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAI 296 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al 296 (473)
.+..+-..+.+.|++++|...|.+..
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44445555555555555555555543
No 280
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.10 E-value=0.61 Score=52.80 Aligned_cols=114 Identities=9% Similarity=-0.076 Sum_probs=74.3
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhh--cCCC-----------CCChhHH----HHHH------HHHHHHHHHH
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYL--DFDG-----------GFEGEQE----TERK------KTLTACHLNA 324 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--~~~~-----------~~~~~~~----~~~~------~~~~~~~~nl 324 (473)
....+..+-..|.+.|++++|+..|.+....- +... ....++. .++. ..+...|..+
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 35567777888999999999999998875431 1100 0000110 1111 0123456667
Q ss_pred HHHHHHcCChhHHHHHHHHHhhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 325 AMCLLKLKQAKPAKDQCDKAIELE-PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 325 a~~~~kl~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
-.+|.+.|++++|.+.++...+.+ +.+...|..+..+|.+.|++++|+..|....+.
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 777778888888888888877765 345667777777777888888888887777664
No 281
>KOG2610|consensus
Probab=95.06 E-value=0.31 Score=46.44 Aligned_cols=111 Identities=13% Similarity=-0.005 Sum_probs=54.4
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh-CC
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL-EP 349 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-~p 349 (473)
.....+..++.+|++.+|...+.+.++-.|.+ ..++..--.+|+-+|+...-...+.+++-. +|
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtD---------------lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~ 169 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTD---------------LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA 169 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchh---------------hhhhhhhhhHHHhccchhhhhhHHHHhccccCC
Confidence 33445566788899999999999988655542 111111222233344444444444444433 33
Q ss_pred CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385 350 NNE---KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396 (473)
Q Consensus 350 ~~~---ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 396 (473)
+-+ ...=.++.++...|-|++|.+..++|++++|.+.-+...+..+.
T Consensus 170 dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 170 DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence 321 11112334444455555555555555555555444444443333
No 282
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.00 E-value=0.26 Score=53.60 Aligned_cols=145 Identities=13% Similarity=-0.042 Sum_probs=98.1
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhh--cCC-----------CCCChhHHHHH-HH--------HHHHHHHHHHH
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYL--DFD-----------GGFEGEQETER-KK--------TLTACHLNAAM 326 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--~~~-----------~~~~~~~~~~~-~~--------~~~~~~~nla~ 326 (473)
...+..+...|.+.|++++|+..|++.+..- +.. ....-++...+ +. .+...|..+..
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 4467777888889999999999998876421 110 00001111111 11 11235777888
Q ss_pred HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406 (473)
Q Consensus 327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 406 (473)
++.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+.++|++...+..|..++.+.++..++.
T Consensus 471 ~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 888999999999888764 2333 45678888889999999999999999999999998888888888777765554443
Q ss_pred HHHHHHHhhh
Q psy4385 407 KQVYANMFDK 416 (473)
Q Consensus 407 k~~~~~~f~~ 416 (473)
+.++.|-++
T Consensus 549 -~v~~~m~~~ 557 (697)
T PLN03081 549 -KVVETLKRK 557 (697)
T ss_pred -HHHHHHHHc
Confidence 344555433
No 283
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.98 E-value=0.28 Score=45.86 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy4385 304 GFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378 (473)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~a 378 (473)
++.+.+.+.+......++...|..|+..|.|.+|++.|++++.+||-+...+.-+-..+..+|+--+|...|.+.
T Consensus 265 ~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 265 PWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344556667778888888889999999999999999999999999999999999999999999977777766554
No 284
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.95 E-value=0.13 Score=41.32 Aligned_cols=115 Identities=13% Similarity=0.014 Sum_probs=79.3
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH----Hhh
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK----AIE 346 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~----al~ 346 (473)
.+..+|+..++.+++-.|+-+|++|+.+.+.....++.+..++-...+...-|+|..+..+|+.+-.+.+.+- ++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999988776544444555566667777888999999999999999988754 566
Q ss_pred hCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385 347 LEPNNEKAFFRRGNA-YLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a-~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 392 (473)
+-|.-+.. ...+ .-.+|--..|+-+| ++..|+ +.+.+.+
T Consensus 83 LiPQCp~~---~C~afi~sLGCCk~ALl~F---~KRHPN-P~iA~~v 122 (140)
T PF10952_consen 83 LIPQCPNT---ECEAFIDSLGCCKKALLDF---MKRHPN-PEIARLV 122 (140)
T ss_pred hccCCCCc---chHHHHHhhhccHHHHHHH---HHhCCC-HHHHHHH
Confidence 66664421 1111 12344445555554 455775 5544433
No 285
>KOG3824|consensus
Probab=94.95 E-value=0.044 Score=51.26 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=68.0
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.|....+.+....+.|+.++|...|.-|+ .+.|.++.++...|...-.-++.-+|-.+|-+||.+
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAl---------------alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHAL---------------ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHH---------------hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34444445666778999999999999999 667778999999999988888999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy4385 348 EPNNEKAFFRRGNAY 362 (473)
Q Consensus 348 ~p~~~ka~~~~g~a~ 362 (473)
+|.|.+|+-+|+...
T Consensus 180 sP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 180 SPGNSEALVNRARTT 194 (472)
T ss_pred CCCchHHHhhhhccc
Confidence 999999999987543
No 286
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.91 E-value=0.054 Score=34.65 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.++.|+|.+|..+|+|++|+..+.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677777777777777777777777655
No 287
>KOG3081|consensus
Probab=94.78 E-value=0.43 Score=44.10 Aligned_cols=103 Identities=12% Similarity=0.134 Sum_probs=78.6
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.|.+|..++. ..+++..|.-.|+.--. --+..+.+.+..|.|++.+++|++|......||.-
T Consensus 175 LA~awv~la~---ggek~qdAfyifeE~s~---------------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 175 LAQAWVKLAT---GGEKIQDAFYIFEELSE---------------KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHhc---cchhhhhHHHHHHHHhc---------------ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4555544332 23457778888877653 22334678889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCHHH
Q psy4385 348 EPNNEKAFFRRGNAYLDLNEPELAEK-DFQKVLQIDPNNKAA 388 (473)
Q Consensus 348 ~p~~~ka~~~~g~a~~~lg~~~~A~~-~~~~al~l~P~~~~~ 388 (473)
+++++..+-|+-.+-..+|.-.++.. .+.+....+|+++-+
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999999999999998877664 455566667877654
No 288
>KOG2471|consensus
Probab=94.59 E-value=0.068 Score=53.11 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=72.9
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhh-hhcCCC-CCCh-hHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIP-YLDFDG-GFEG-EQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~-~~~~~~-~~~~-~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
...+.++|-.+|+.+.|..++.+|.+|++ .+.... .... .-..-.......+++|.|..|+..|++..|.+++.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 34567899999999999999999999995 221100 0000 00001122345688999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHh
Q psy4385 346 ELEPNNEKAFFRRGNAYLD 364 (473)
Q Consensus 346 ~~~p~~~ka~~~~g~a~~~ 364 (473)
..-..|+..|.|++.|...
T Consensus 363 ~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCcHHHHHHHHHHHH
Confidence 9999999999999998865
No 289
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.44 E-value=0.39 Score=48.30 Aligned_cols=115 Identities=16% Similarity=0.052 Sum_probs=75.3
Q ss_pred hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH-----HHcCChhHHHHHHHHHhhhC----
Q psy4385 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL-----LKLKQAKPAKDQCDKAIELE---- 348 (473)
Q Consensus 278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-----~kl~~~~~A~~~~~~al~~~---- 348 (473)
...+..+.+.-++.-++|+ +++|+.+.+|.-+|.-. -...-|.+|++..+.++..+
T Consensus 177 ~AWRERnp~aRIkaA~eAL---------------ei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~ 241 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEAL---------------EINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQ 241 (539)
T ss_pred HHHhcCCHHHHHHHHHHHH---------------HhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhh
Confidence 3467788899999999999 55555566665555311 11111333333333333221
Q ss_pred ------------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 349 ------------PNN--EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN--NKAAVQKLTQTKQKLREQKIKEK 407 (473)
Q Consensus 349 ------------p~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~~~~~k 407 (473)
+.+ +.+-+|+|.|..++|+.++|++.++..++..|. +-.++..|-.+.-.++.+.+.++
T Consensus 242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 111 345678999999999999999999999998886 45678888887777666655544
No 290
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.39 E-value=0.43 Score=49.08 Aligned_cols=110 Identities=16% Similarity=0.094 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385 312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN----EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387 (473)
Q Consensus 312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~ 387 (473)
...|...-.++..|..+...|+.+.|++.+++++...... .-++|-+|-++..+.+|++|..+|.+..+.+.-.+.
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 4445667788899999999999999999999998544332 346889999999999999999999999997766555
Q ss_pred HHHHH-HHHHHHHHHH--HHHHHHHHHHHhhhhcCCC
Q psy4385 388 AVQKL-TQTKQKLREQ--KIKEKQVYANMFDKFAKHD 421 (473)
Q Consensus 388 ~~~~l-~~~~~~~~~~--~~~~k~~~~~~f~~~~~~~ 421 (473)
.+..+ +.|...+.+. .+..++....+|.+....-
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 55444 4444444333 1122244455665555443
No 291
>PLN03077 Protein ECB2; Provisional
Probab=94.33 E-value=0.67 Score=51.82 Aligned_cols=136 Identities=15% Similarity=0.016 Sum_probs=91.9
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhh--hcCCCCC-----------ChhHH----HHHH-----HHHHHHHHHHHH
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPY--LDFDGGF-----------EGEQE----TERK-----KTLTACHLNAAM 326 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--~~~~~~~-----------~~~~~----~~~~-----~~~~~~~~nla~ 326 (473)
...+..+...|.+.|+.++|+..|++..+. .+..... .-++. ..+. ..+...|..+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 345667778889999999999999987642 1111100 00110 0111 112346778888
Q ss_pred HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406 (473)
Q Consensus 327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 406 (473)
++.+.|++++|.+.+++. .+.|+ +..|..+-.++...++.+.|....+++++++|++...+..|..++...++..+..
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 888889999988888774 34554 5556666667777888888888888899999999888888888877665555443
No 292
>PLN03077 Protein ECB2; Provisional
Probab=94.31 E-value=0.43 Score=53.31 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
...|..+-.++..-++.+.|....+++++++|+++..|..++.+|...|+|++|.+..+...+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 344555555566788999999999999999999999999999999999999999998877654
No 293
>KOG1070|consensus
Probab=94.07 E-value=0.73 Score=51.76 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=78.9
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC----------------C-ChhHH------HHHHHHHHHHHHHH
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG----------------F-EGEQE------TERKKTLTACHLNA 324 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~----------------~-~~~~~------~~~~~~~~~~~~nl 324 (473)
.+--|.+.=.-+.+.++.+.|....++|+..++.... . +++.. +...-.-...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3334444434455666677777777777766643110 0 01100 00111223466677
Q ss_pred HHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384 (473)
Q Consensus 325 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~ 384 (473)
+-.|.+-+++++|.+.++.-++.--+..+.|..+|..+++.++-++|...+.+||+.-|.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 788888888999999998888877778889999999999999999999999999998887
No 294
>PRK10941 hypothetical protein; Provisional
Probab=93.92 E-value=0.34 Score=45.67 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=67.7
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
..+.+.++-..+.+.++|..|+++-++.+ .+.|..+.-+.-+|.+|.+++.+..|+.+++.-++.
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll---------------~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALL---------------QFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35566777888999999999999999999 555566777888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q psy4385 348 EPNNEKAFFRRGNA 361 (473)
Q Consensus 348 ~p~~~ka~~~~g~a 361 (473)
.|+.+.+..-+.+.
T Consensus 245 ~P~dp~a~~ik~ql 258 (269)
T PRK10941 245 CPEDPISEMIRAQI 258 (269)
T ss_pred CCCchhHHHHHHHH
Confidence 99999886655544
No 295
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.92 E-value=0.12 Score=32.98 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
..++.++|.+|..+|+|++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999876
No 296
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.86 E-value=0.11 Score=48.86 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385 316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFR-RGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394 (473)
Q Consensus 316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~-~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 394 (473)
..+.+|...+.-..+.+-|...-..|.++|+.+|.|+..|.. .+.-+...++++.|.+.|.++|+++|+++.+|.+.-+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 446778888888888899999999999999999999998866 5566778899999999999999999999998876654
Q ss_pred HH
Q psy4385 395 TK 396 (473)
Q Consensus 395 ~~ 396 (473)
..
T Consensus 185 ~E 186 (435)
T COG5191 185 ME 186 (435)
T ss_pred HH
Confidence 43
No 297
>KOG1070|consensus
Probab=93.85 E-value=0.61 Score=52.34 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385 316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN--NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393 (473)
Q Consensus 316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 393 (473)
.....|...|..+++.++-+.|.....+||+--|. ++...-..|+.-++.|+-+.+...|+-.+.-+|.-.+.|..+-
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 35678999999999999999999999999999997 7888888999999999999999999999999999888887666
Q ss_pred HHHHH
Q psy4385 394 QTKQK 398 (473)
Q Consensus 394 ~~~~~ 398 (473)
....+
T Consensus 1642 d~eik 1646 (1710)
T KOG1070|consen 1642 DMEIK 1646 (1710)
T ss_pred HHHHc
Confidence 55443
No 298
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.79 E-value=0.097 Score=47.09 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=54.7
Q ss_pred hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH
Q psy4385 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE 352 (473)
Q Consensus 278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ 352 (473)
.+++.++++.|...|.+|+ ++-|....-|+.+|....+.|+++.|.+.|.++|++||.+.
T Consensus 4 ~~~~~~D~~aaaely~qal---------------~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQAL---------------ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHh---------------hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4567899999999999999 66677889999999999999999999999999999999764
No 299
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.76 E-value=0.54 Score=44.33 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 309 QETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 309 ~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
....+......++..++-.+...++++.++...++.+.++|-+-++|.++=.+|+..|+...|+..|.+...+
T Consensus 144 ~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 144 QRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3446677889999999999999999999999999999999999999999999999999999999999988774
No 300
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.74 E-value=0.42 Score=35.43 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=53.2
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
.+....+.|..+|...+..+|+..++++++-... .+..-.++-.++.+|...|+|.+++++.-+=+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999999999999999965543 334566777788889999999998887755443
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.54 E-value=0.82 Score=44.88 Aligned_cols=114 Identities=20% Similarity=0.180 Sum_probs=74.4
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhh-hhcCCCCC------------------ChhHHHHHHHHHHHHHHHHHHHHHHc
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIP-YLDFDGGF------------------EGEQETERKKTLTACHLNAAMCLLKL 331 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~-~~~~~~~~------------------~~~~~~~~~~~~~~~~~nla~~~~kl 331 (473)
...+.+..+...|+..+|+...+..+. .+...... ............+.+++.+|.-...+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 344455556667777778877777776 22221000 00012233455677788888777777
Q ss_pred ------CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhcCCC
Q psy4385 332 ------KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEP-----------------ELAEKDFQKVLQIDPN 384 (473)
Q Consensus 332 ------~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~-----------------~~A~~~~~~al~l~P~ 384 (473)
+.++.++..|..|++++|.+.++|++.|..+..+=+. ..|+..|-+++.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7888899999999999999999999888877654222 2366777777777665
No 302
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.54 E-value=1.2 Score=42.61 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=76.8
Q ss_pred hhcchhhh-cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH
Q psy4385 274 ERGTTYFK-QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE 352 (473)
Q Consensus 274 ~~G~~~~~-~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ 352 (473)
..+..-+. .++...|...|+++++. -+.+..+++.....++++++.+.|...+++++..-|...
T Consensus 40 ~~A~~E~~~~~d~~~A~~Ife~glk~---------------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 40 AYALMEYYCNKDPKRARKIFERGLKK---------------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHHHHHTCS-HHHHHHHHHHHHHH---------------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 33444344 67778899999999954 445677788888889999999999999999998866554
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385 353 ---KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390 (473)
Q Consensus 353 ---ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 390 (473)
..|-+...--...|+++......+++.++-|++..+..
T Consensus 105 ~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 105 QSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 46666777778889999999999999999998665443
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.53 E-value=1 Score=38.56 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396 (473)
Q Consensus 317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 396 (473)
....+..+..+-++.++.+.+...+.-+--+.|+.+..-.--|..+...|+|.+|+..|+.+..-.|..+.+...+..|.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 35566777788888999999999999999999999999999999999999999999999999998999998888888888
Q ss_pred HHHHH
Q psy4385 397 QKLRE 401 (473)
Q Consensus 397 ~~~~~ 401 (473)
..++.
T Consensus 89 ~~~~D 93 (160)
T PF09613_consen 89 YALGD 93 (160)
T ss_pred HHcCC
Confidence 66543
No 304
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.44 E-value=0.4 Score=37.35 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=43.9
Q ss_pred hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
..+.++|..|+..+.+..++........ .......+.+++|.++...|++++|+..+++|+.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~------~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSS------SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccch------hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3567999999999888886644321110 01234456778888888888888888888888766
No 305
>KOG1310|consensus
Probab=93.43 E-value=0.31 Score=49.11 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=68.2
Q ss_pred HHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385 328 LLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN---EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKI 404 (473)
Q Consensus 328 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 404 (473)
.+....+..|+.+|.++++.-|+....|-+++.++++.+ +.-.|+.++..|++++|....++..|.++...+....+
T Consensus 384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence 334456778999999999999999999999999998864 55679999999999999999999999999988887776
Q ss_pred HH
Q psy4385 405 KE 406 (473)
Q Consensus 405 ~~ 406 (473)
+.
T Consensus 464 al 465 (758)
T KOG1310|consen 464 AL 465 (758)
T ss_pred hh
Confidence 54
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.41 E-value=0.87 Score=44.72 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=95.2
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
..+..+...+..+.+.|++..|.....++....... ....+.+.+..|..+...|+..+|+......+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~-----------~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS-----------ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc-----------cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445677788889999999999999999888544211 111355677778888888999999988877776
Q ss_pred h--C-C-------------------------------CCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCH
Q psy4385 347 L--E-P-------------------------------NNEKAFFRRGNAYLDL------NEPELAEKDFQKVLQIDPNNK 386 (473)
Q Consensus 347 ~--~-p-------------------------------~~~ka~~~~g~a~~~l------g~~~~A~~~~~~al~l~P~~~ 386 (473)
. . + ...++++.+|.-...+ +.+++++..|..|..++|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1 0 0 1236777888777777 889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4385 387 AAVQKLTQTKQKLREQK 403 (473)
Q Consensus 387 ~~~~~l~~~~~~~~~~~ 403 (473)
.++..++.....+-...
T Consensus 293 k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 293 KAWHSWALFNDKLLESD 309 (352)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888887776654443
No 307
>KOG4507|consensus
Probab=93.29 E-value=0.31 Score=49.65 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=90.2
Q ss_pred hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHH
Q psy4385 280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRG 359 (473)
Q Consensus 280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g 359 (473)
.-+|+..+|..+|..|+-+.+. -..-.+++.+|..+.++|...+|--....|+.--|....-+|-++
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~-------------h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~ 290 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSR-------------HNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLG 290 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCc-------------ccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHH
Confidence 4678999999999999966543 112346778999999999999988888888887777777799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 360 NAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ---KLTQTKQKLREQKIKEKQVYANM 413 (473)
Q Consensus 360 ~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~---~l~~~~~~~~~~~~~~k~~~~~~ 413 (473)
+++..+++|......|..+++.+|.....-. ..-.|..++-+..++.++..+.|
T Consensus 291 ~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~ 347 (886)
T KOG4507|consen 291 NIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT 347 (886)
T ss_pred HHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997644322 22334444444444444433333
No 308
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.24 E-value=0.75 Score=50.91 Aligned_cols=138 Identities=10% Similarity=0.047 Sum_probs=96.3
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc----C---ChhHHHHHHHHHhh
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL----K---QAKPAKDQCDKAIE 346 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl----~---~~~~A~~~~~~al~ 346 (473)
....++...+.|++|+..|++....++.-. .--.+.+..|.+.+.. + .+.+|+.-+++. .
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 546 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRK------------EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-H 546 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcc------------cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-c
Confidence 455677888999999999999886665311 1133556666666542 2 466666666553 3
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCchH
Q psy4385 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK-EKQVYANMFDKFAKHDTEK 424 (473)
Q Consensus 347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~-~k~~~~~~f~~~~~~~~~~ 424 (473)
-.|.-+--|...|.+|.++|+|++-+++|..|++..|+++.+-.....+..++.+.... .+..|.-|+=-+...+.+.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 34566677889999999999999999999999999999998877666666666555433 4456677765555444433
No 309
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.24 E-value=0.14 Score=32.27 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
.+|.++|.+-+..++|++|+.+|+++|.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888888889999999999888876
No 310
>KOG4814|consensus
Probab=93.07 E-value=0.82 Score=47.24 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN------NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 391 (473)
..++-|-|.-++++.+|..+++.|...+..-|. ..|...+++.||+.+.+.|.|++.++.|-+.+|.+.-....
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 445667888999999999999999999977554 35888889999999999999999999999999998766554
Q ss_pred HHHH
Q psy4385 392 LTQT 395 (473)
Q Consensus 392 l~~~ 395 (473)
.-..
T Consensus 434 ~~~~ 437 (872)
T KOG4814|consen 434 MLQS 437 (872)
T ss_pred HHHH
Confidence 4433
No 311
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.04 E-value=4.8 Score=38.28 Aligned_cols=104 Identities=21% Similarity=0.169 Sum_probs=75.5
Q ss_pred hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHhhh----CC---C
Q psy4385 279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKAIEL----EP---N 350 (473)
Q Consensus 279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~----~p---~ 350 (473)
..++|+++.|...|.|+-.......+ ..-...+..++|.|...++.+ +|+.|+...++|+++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~-------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDP-------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCc-------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 35789999999999999876632111 333456889999999999999 999999999999877 22 1
Q ss_pred -------CHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCHHHH
Q psy4385 351 -------NEKAFFRRGNAYLDLNEPEL---AEKDFQKVLQIDPNNKAAV 389 (473)
Q Consensus 351 -------~~ka~~~~g~a~~~lg~~~~---A~~~~~~al~l~P~~~~~~ 389 (473)
..+.+..++.+|+..+.++. |...++.+-.-.|+.+...
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 12567778999999888764 4444444545557655554
No 312
>KOG2610|consensus
Probab=92.95 E-value=0.27 Score=46.76 Aligned_cols=96 Identities=14% Similarity=-0.015 Sum_probs=66.5
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
...+++-.-.++|..|+...-...+++.+..-+. -.|...-++--+|.|+...|-|++|.+..++++++
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~-----------dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi 204 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA-----------DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI 204 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccccCC-----------CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC
Confidence 3445555566788888888888888888743221 13344556667889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy4385 348 EPNNEKAFFRRGNAYLDLNEPELAEKD 374 (473)
Q Consensus 348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~ 374 (473)
++.+.=|...++.++...+++.++.+.
T Consensus 205 N~~D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 205 NRFDCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred CCcchHHHHHHHHHHHhcchhhhHHHH
Confidence 988765555555555555555444443
No 313
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=92.71 E-value=1.4 Score=44.03 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=73.0
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH--cCC-----hhHHH
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK--LKQ-----AKPAK 338 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--l~~-----~~~A~ 338 (473)
+.......+.|..++..|+|.+|+..|+..|..++-....+.++..+++.+...+.-.+-.+.+. .+. .+...
T Consensus 201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k 280 (422)
T PF06957_consen 201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK 280 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence 34444555679999999999999999999998877655555566666666555544333222222 222 12233
Q ss_pred HHHHHHh-----hhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385 339 DQCDKAI-----ELEPNNEKAFFRRGN-AYLDLNEPELAEKDFQKVLQIDPNNKAA 388 (473)
Q Consensus 339 ~~~~~al-----~~~p~~~ka~~~~g~-a~~~lg~~~~A~~~~~~al~l~P~~~~~ 388 (473)
+.++-|. .+.|.+...-+|.|. ..++.++|.-|....++.|++.|....+
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 3344433 334433333344443 3467899999999999999999986543
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.68 E-value=4.2 Score=34.89 Aligned_cols=111 Identities=12% Similarity=-0.072 Sum_probs=81.7
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
...+.+........++...+...+...- -++|..+.+-.--|..++..++|.+|+..++.+..-.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALr---------------vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALR---------------VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHH---------------HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 4456666677777788888888776554 5667778888899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396 (473)
Q Consensus 349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 396 (473)
|..+.+---++.|+..+++.+ =..+-..+++-.+ ++.+......+.
T Consensus 75 ~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 75 PGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-DPDARALVRALL 120 (160)
T ss_pred CCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 998877777888888888863 1233344555554 455555444443
No 315
>KOG3364|consensus
Probab=92.44 E-value=0.17 Score=41.68 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHH
Q psy4385 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFF 356 (473)
Q Consensus 317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~ 356 (473)
.-.+.+.+|..|+++++|+.++.+++..|+.+|+|..|.-
T Consensus 70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3557788999999999999999999999999999998863
No 316
>KOG2053|consensus
Probab=92.39 E-value=0.65 Score=49.74 Aligned_cols=110 Identities=15% Similarity=0.039 Sum_probs=81.1
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK 353 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 353 (473)
-.|..+++.|++++|..+ -+++..... ..-..+--+-.||..++++++|...|++++..+|+ .+
T Consensus 48 LkaLsl~r~gk~~ea~~~-Le~~~~~~~--------------~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-ee 111 (932)
T KOG2053|consen 48 LKALSLFRLGKGDEALKL-LEALYGLKG--------------TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EE 111 (932)
T ss_pred HHHHHHHHhcCchhHHHH-HhhhccCCC--------------CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HH
Confidence 356678899999999944 444433222 12335556788999999999999999999999999 89
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHH
Q psy4385 354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA-AVQKLTQTKQKL 399 (473)
Q Consensus 354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~-~~~~l~~~~~~~ 399 (473)
-++.+-.||.+-+.|.+-.+.--+..+.-|+++- .|..+..+.+.+
T Consensus 112 ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence 9999999999999998766666666667787763 244444444433
No 317
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.33 E-value=0.76 Score=35.73 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHcCChhHHHHHHHHHhhhCC----CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385 328 LLKLKQAKPAKDQCDKAIELEP----NN-----EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384 (473)
Q Consensus 328 ~~kl~~~~~A~~~~~~al~~~p----~~-----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~ 384 (473)
.++.++|..|++...+.+.... .. ..++.++|.++...|++++|+..++.|+++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4689999999888888775532 12 467889999999999999999999999988643
No 318
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.19 E-value=1.5 Score=43.48 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=77.9
Q ss_pred cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh--------------
Q psy4385 282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL-------------- 347 (473)
Q Consensus 282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-------------- 347 (473)
...|.++...|..++..... ..--.--...|..+..++.++.++..+|++..|.+.+++||-.
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp---~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~ 83 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDP---NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS 83 (360)
T ss_pred CHHHHHHHHHHHHHHHccCH---HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 45677788888877743211 0001112556788999999999999999999999999999711
Q ss_pred C------------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CH
Q psy4385 348 E------------PNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-NK 386 (473)
Q Consensus 348 ~------------p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~-~~ 386 (473)
+ +.| ..|+++..+.+.+.|.+.-|++.++-.+.+||. |+
T Consensus 84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 1 112 268899999999999999999999999999999 55
No 319
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.14 E-value=0.44 Score=29.67 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHhcCCCC
Q psy4385 353 KAFFRRGNAYLDLNEPELAEKD--FQKVLQIDPNN 385 (473)
Q Consensus 353 ka~~~~g~a~~~lg~~~~A~~~--~~~al~l~P~~ 385 (473)
+.++.+|..+...|+|++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3456666666666777777666 33666666543
No 320
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.47 E-value=5.2 Score=38.95 Aligned_cols=109 Identities=11% Similarity=0.152 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC------------hhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy4385 312 ERKKTLTACHLNAAMCLLKLKQ------------AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379 (473)
Q Consensus 312 ~~~~~~~~~~~nla~~~~kl~~------------~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 379 (473)
.-+|.+..+|+.+....-.+-. .+..+..+++||+.+|++...+..+=.+..+..+-++..+-+++++
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4455566666666655544432 4677889999999999999999888888889999999999999999
Q ss_pred hcCCCCHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHhhhhcCC
Q psy4385 380 QIDPNNKAAVQKLTQTK-QKLREQ-KIKEKQVYANMFDKFAKH 420 (473)
Q Consensus 380 ~l~P~~~~~~~~l~~~~-~~~~~~-~~~~k~~~~~~f~~~~~~ 420 (473)
..+|++..++..+-... ...... -..-+..|.+++..+...
T Consensus 93 ~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~ 135 (321)
T PF08424_consen 93 FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR 135 (321)
T ss_pred HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 99999988876543332 222211 234556777777666543
No 321
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.34 E-value=1.2 Score=36.01 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=57.5
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
+-.+--+..++...|+|++++..-.+|+.+++.-..-..++ -.+.+.+.+++|.++--+|..++|+..++.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44556677788899999999999999999987643333322 2357888999999999999999999999998765
No 322
>KOG1550|consensus
Probab=91.00 E-value=1.8 Score=45.66 Aligned_cols=104 Identities=18% Similarity=0.103 Sum_probs=79.0
Q ss_pred HHhhcchhhhc----c-cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHH
Q psy4385 272 LKERGTTYFKQ----D-KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK---QAKPAKDQCDK 343 (473)
Q Consensus 272 ~~~~G~~~~~~----~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~ 343 (473)
...+|..|.+. . ++..|+..|.+|... .++.+.+++|.|+..-. ++..|..+|..
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-----------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-----------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-----------------CCchHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 44566666653 2 788899999998843 34668889999998766 67899999999
Q ss_pred HhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385 344 AIELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396 (473)
Q Consensus 344 al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 396 (473)
|... .++.|.|++|.||.. ..+...|...+++|.+.. +..+...+..+.
T Consensus 354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 8876 478999999999975 357899999999999887 444444444443
No 323
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.76 E-value=2 Score=33.11 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
..+|.+..+.+.+|.+++..|+|+.|++.+-.+++.++.+
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 6678889999999999999999999999999999999876
No 324
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=5.1 Score=37.87 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy4385 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376 (473)
Q Consensus 322 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~ 376 (473)
+..+.-.+..+++..|...+..+++.+|.+..+..-++.||...|+.+.|...|.
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence 3455567789999999999999999999999999999999999999987665543
No 325
>KOG2300|consensus
Probab=90.44 E-value=7.2 Score=39.34 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=77.5
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
..+..+.-+|.....-+.|+.|...|..|.+..+. ..+.+-+-.|+|..|++.++-+. .|+-.=.
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld~ 429 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED---LYKALDL 429 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH---HHHHHHh
Confidence 45566777898888999999999999999976542 34567788899999999776433 2322223
Q ss_pred hCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385 347 LEPNN----------EKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382 (473)
Q Consensus 347 ~~p~~----------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 382 (473)
+.|.| ..++|-.|...+..+++.||...+.+.|+..
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 45543 2578889999999999999999999999876
No 326
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.35 E-value=5 Score=40.16 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=57.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH
Q psy4385 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN----KAAVQKLTQTKQK 398 (473)
Q Consensus 323 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~----~~~~~~l~~~~~~ 398 (473)
.=|.-++..|+|.+|.-++.=+.+++| .+.+|.-+|.|++...+|++|..+|... -|++ ..++..+..|.+.
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh 542 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKH 542 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHh
Confidence 334556789999999999999999999 8999999999999999999999988643 3432 2345556666554
Q ss_pred H
Q psy4385 399 L 399 (473)
Q Consensus 399 ~ 399 (473)
+
T Consensus 543 ~ 543 (549)
T PF07079_consen 543 L 543 (549)
T ss_pred h
Confidence 4
No 327
>KOG0686|consensus
Probab=90.30 E-value=1.4 Score=43.24 Aligned_cols=98 Identities=21% Similarity=0.164 Sum_probs=77.0
Q ss_pred HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC-
Q psy4385 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE- 348 (473)
Q Consensus 270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~- 348 (473)
.++..+|.-|...|++..|++.|.++-.++.. .......+.|+-.+-+-+++|.....+.++|.+.-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~ 218 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPD 218 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCch
Confidence 45667888889999999999999998777653 23346677788888888999999998888887661
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy4385 349 -------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379 (473)
Q Consensus 349 -------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 379 (473)
.-.++...-.|.+++.++.|..|.++|-.+-
T Consensus 219 ~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 219 ANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1134666778899999999999999887663
No 328
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.96 E-value=5.1 Score=39.29 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=70.7
Q ss_pred hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHH
Q psy4385 280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRG 359 (473)
Q Consensus 280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g 359 (473)
...|+|+.|++..+......-. +....+.....++...|...+. -+...|.++..+++++.|+.+.+-.--+
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vi-------e~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVI-------EKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHH
Confidence 4566677776665554421110 0012333445555555555443 3588999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385 360 NAYLDLNEPELAEKDFQKVLQIDPN 384 (473)
Q Consensus 360 ~a~~~lg~~~~A~~~~~~al~l~P~ 384 (473)
.++++.|+..++-..++.+.+.+|+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCC
Confidence 9999999999999999999999986
No 329
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=3 Score=42.96 Aligned_cols=103 Identities=16% Similarity=0.039 Sum_probs=76.8
Q ss_pred hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH-HHHHHHHHhhhCCCCHHHHH
Q psy4385 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP-AKDQCDKAIELEPNNEKAFF 356 (473)
Q Consensus 278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~-A~~~~~~al~~~p~~~ka~~ 356 (473)
.+...+....|.-....++ ..++.+..++.|+|.+....+..-. +...+..+....|+|.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 76 LLAPLADSTLAFLAKRIPL---------------SVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred hccccccchhHHHHHhhhH---------------hcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 3344444545555555555 5567788999999999877775554 45555559999999988777
Q ss_pred HH------HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385 357 RR------GNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395 (473)
Q Consensus 357 ~~------g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 395 (473)
.+ +.....+++.++|...+.++..+.|.++.+...+...
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 76 8888889999999999999999999997766555544
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.61 E-value=0.48 Score=26.96 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q psy4385 354 AFFRRGNAYLDLNEPELAEKDFQ 376 (473)
Q Consensus 354 a~~~~g~a~~~lg~~~~A~~~~~ 376 (473)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666665543
No 331
>KOG0530|consensus
Probab=89.09 E-value=7.8 Score=36.02 Aligned_cols=107 Identities=18% Similarity=0.096 Sum_probs=84.9
Q ss_pred hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385 280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKAIELEPNNEKAFFRR 358 (473)
Q Consensus 280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~p~~~ka~~~~ 358 (473)
++...-.+|++.-..+| .++|.+-..+.-+=.|+..++ +..+-+++.+++++-+|.|...|..|
T Consensus 54 ~~~E~S~RAl~LT~d~i---------------~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR 118 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAI---------------RLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR 118 (318)
T ss_pred hccccCHHHHHHHHHHH---------------HhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH
Confidence 45556678888888888 666777777777777776655 57778888899999999999999988
Q ss_pred HHHHHhcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385 359 GNAYLDLNEPE-LAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401 (473)
Q Consensus 359 g~a~~~lg~~~-~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 401 (473)
-.+...+|++. .-+...+.++..|..|--++....-+.+..+.
T Consensus 119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~ 162 (318)
T KOG0530|consen 119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD 162 (318)
T ss_pred HHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence 88888888887 77888999999888887777777766666655
No 332
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.00 E-value=0.63 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
.+|..+|-+-+..++|.+|+.+|.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999874
No 333
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.93 E-value=1.4 Score=43.99 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=78.6
Q ss_pred hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA 354 (473)
Q Consensus 275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka 354 (473)
+-..+.-.|+|..|++..+.. .+-.. ..-...-+-....++..|-||+.+++|.+|++.+..+|-.=...-..
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i-dl~~~------~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~ 200 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI-DLNKK------GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQ 200 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc-Ccccc------hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334566778888888765432 11110 00012234467789999999999999999999999987542111112
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhh
Q psy4385 355 FFRRGNAYLD-LNEPELAEKDFQKVLQIDPN--NKAAVQKLTQ-TKQKLREQKIKEKQVYANMFDKF 417 (473)
Q Consensus 355 ~~~~g~a~~~-lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~-~~~~~~~~~~~~k~~~~~~f~~~ 417 (473)
+..+..-+-. ....|.....+--++.+.|. +..+...+.. ...++.+-...+-..|..+|...
T Consensus 201 ~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~a 267 (404)
T PF10255_consen 201 YHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFA 267 (404)
T ss_pred hccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhh
Confidence 2222222222 24456667777778888885 4444444332 23333333333556788888764
No 334
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.80 E-value=7.2 Score=37.16 Aligned_cols=107 Identities=21% Similarity=0.160 Sum_probs=77.8
Q ss_pred hHHHHhhcchhhh----cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc----C---ChhHH
Q psy4385 269 GKLLKERGTTYFK----QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL----K---QAKPA 337 (473)
Q Consensus 269 a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl----~---~~~~A 337 (473)
+.....+|..++. ..++.+|...|.+|...-... -..+.++++.+|..- + +...|
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~--------------a~~~~~~l~~~~~~g~~~~~~~~~~~~A 174 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE--------------AALAMYRLGLAYLSGLQALAVAYDDKKA 174 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh--------------HHHHHHHHHHHHHcChhhhcccHHHHhH
Confidence 3355566666665 459999999999998432210 034467777777653 1 33479
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385 338 KDQCDKAIELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPNNKAAVQKLT 393 (473)
Q Consensus 338 ~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 393 (473)
+..+.++.... ++.+.+++|.+|.. ..++.+|...|.+|.+... ..+...+.
T Consensus 175 ~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 175 LYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 99999988876 88999999988855 4589999999999998875 66666666
No 335
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.75 E-value=5.9 Score=31.67 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=53.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhhCCCCHHH---HHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCHHHH
Q psy4385 324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKA---FFRRGNAYLDLNE-----------PELAEKDFQKVLQIDPNNKAAV 389 (473)
Q Consensus 324 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka---~~~~g~a~~~lg~-----------~~~A~~~~~~al~l~P~~~~~~ 389 (473)
+|.-++..|++-+|++..+..+...+++..+ +..-|.++..+.. +-.|+++|.++..+.|..+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 5677889999999999999999998877643 3344666655432 2358899999999999986666
Q ss_pred HHHHHH
Q psy4385 390 QKLTQT 395 (473)
Q Consensus 390 ~~l~~~ 395 (473)
..|+.-
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 666554
No 336
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.33 E-value=1.5 Score=27.25 Aligned_cols=32 Identities=13% Similarity=-0.029 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCChhHHHHH--HHHHhhhCCCC
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQ--CDKAIELEPNN 351 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~--~~~al~~~p~~ 351 (473)
.+..+|.++...|+|++|++. |.-+..+++.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 456789999999999999999 55888888765
No 337
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.33 E-value=1.9 Score=40.85 Aligned_cols=62 Identities=19% Similarity=0.108 Sum_probs=52.4
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398 (473)
Q Consensus 337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 398 (473)
|..+|.+|+.+.|.+-..|..+|..+...++.=+|+-.|-|++...--.+.+..+|..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999997765557788888877766
No 338
>KOG1550|consensus
Probab=88.22 E-value=4 Score=43.03 Aligned_cols=116 Identities=18% Similarity=0.117 Sum_probs=83.6
Q ss_pred hHHHHhhcchhh-----hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-----ChhHHH
Q psy4385 269 GKLLKERGTTYF-----KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-----QAKPAK 338 (473)
Q Consensus 269 a~~~~~~G~~~~-----~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-----~~~~A~ 338 (473)
+.+....|..++ ...+.+.|+.+|+.|..-+. .......+.+.+.+|.||++-. ++..|+
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~----------~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~ 313 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFK----------KAATKGLPPAQYGLGRLYLQGLGVEKIDYEKAL 313 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHH----------HHHhhcCCccccHHHHHHhcCCCCccccHHHHH
Confidence 444455565554 34689999999999984100 0111124556788999998843 678899
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385 339 DQCDKAIELEPNNEKAFFRRGNAYLDLN---EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398 (473)
Q Consensus 339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 398 (473)
..+.++-.+. ++.+.|++|.+|..-. ++..|..+|..|... .+..+...++.|...
T Consensus 314 ~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 314 KLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred HHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 9999998885 7789999999998766 678999999999865 456677777777644
No 339
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.97 E-value=0.84 Score=45.46 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHh--------hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 322 LNAAMCLLKLKQAKPAKDQCDKAI--------ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 322 ~nla~~~~kl~~~~~A~~~~~~al--------~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
.-+..+|.-+|+|..|++..+-+= ..-+.++..+|..|.||+.+++|.+|++.|..+|..
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788999999998765431 112456788999999999999999999999888743
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.91 E-value=6.4 Score=33.30 Aligned_cols=84 Identities=13% Similarity=0.050 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 397 (473)
...+.....+.+...+++++.......--+.|+++..-.--|..+...|+|.+|+..|+....-.+..+-....+..|..
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 44455566666678888888888888888899999888888999999999999999999888877777777777777776
Q ss_pred HHHH
Q psy4385 398 KLRE 401 (473)
Q Consensus 398 ~~~~ 401 (473)
.++.
T Consensus 90 al~D 93 (153)
T TIGR02561 90 AKGD 93 (153)
T ss_pred hcCC
Confidence 6543
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.83 E-value=1.9 Score=28.17 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 356 FRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 356 ~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
+.++.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888874
No 342
>KOG2300|consensus
Probab=87.65 E-value=7.2 Score=39.37 Aligned_cols=99 Identities=20% Similarity=0.058 Sum_probs=78.6
Q ss_pred hHHHHhhcchh-hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHhh
Q psy4385 269 GKLLKERGTTY-FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKAIE 346 (473)
Q Consensus 269 a~~~~~~G~~~-~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~ 346 (473)
|..+..+|..+ +..++++.|..+.++|..+....+.+ ....-.++.-+|.||.... .+..|.....+|++
T Consensus 46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaie 117 (629)
T KOG2300|consen 46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIE 117 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 55666676655 67899999999999998776654322 2345667788999999888 89999999999999
Q ss_pred hCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q psy4385 347 LEPNNE----KAFFRRGNAYLDLNEPELAEKDF 375 (473)
Q Consensus 347 ~~p~~~----ka~~~~g~a~~~lg~~~~A~~~~ 375 (473)
+...++ +.++.+++.+.-..+|..|++.+
T Consensus 118 lsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 118 LSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 976655 67788999999999999998774
No 343
>KOG2047|consensus
Probab=87.18 E-value=4.2 Score=42.41 Aligned_cols=128 Identities=12% Similarity=0.163 Sum_probs=82.7
Q ss_pred eeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHH
Q psy4385 244 YTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLN 323 (473)
Q Consensus 244 y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~n 323 (473)
|+..+.-|+.-+..++.-.+.++.......+.|..+-...-|++|.+.|++.|.+++... .-..-..|+-
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~----------v~diW~tYLt 555 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN----------VYDIWNTYLT 555 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc----------HHHHHHHHHH
Confidence 344444555545555555566666666777777777788888999999999998877521 1122334444
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhhCC-CCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 324 AAMCLLKLKQAKPAKDQCDKAIELEP-NNEKAFF-RRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 324 la~~~~kl~~~~~A~~~~~~al~~~p-~~~ka~~-~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
.....+--...+.|...|++||...| ..+|.+| ..++.-..-|--..|+..|++|-.-
T Consensus 556 kfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 44444555578899999999999876 3445544 3444445556677777778777543
No 344
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.36 E-value=4.3 Score=40.11 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHH---cCChhHHHHHHHHHh-hhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCC
Q psy4385 317 LTACHLNAAMCLLK---LKQAKPAKDQCDKAI-ELEPNNEKAFFRRGNAYLDL---------NEPELAEKDFQKVLQIDP 383 (473)
Q Consensus 317 ~~~~~~nla~~~~k---l~~~~~A~~~~~~al-~~~p~~~ka~~~~g~a~~~l---------g~~~~A~~~~~~al~l~P 383 (473)
.....+..|.++.+ .|+.++|++.+..++ ..++.++..|--+|.+|..+ ..++.|+..|.++.+++|
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 45556677888888 899999999999954 55667888888888887542 247899999999999997
Q ss_pred CC
Q psy4385 384 NN 385 (473)
Q Consensus 384 ~~ 385 (473)
+.
T Consensus 258 ~~ 259 (374)
T PF13281_consen 258 DY 259 (374)
T ss_pred cc
Confidence 63
No 345
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.08 E-value=3.4 Score=30.53 Aligned_cols=34 Identities=32% Similarity=0.265 Sum_probs=28.7
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhc
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD 300 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~ 300 (473)
..|..+-..+..+-+.|+|.+|+.+|++|+..+-
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~ 37 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLS 37 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3466777788889999999999999999997654
No 346
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.99 E-value=0.96 Score=25.69 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHH
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCD 342 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~ 342 (473)
.+++++|..+..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467899999999999999998775
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.03 E-value=7.8 Score=28.86 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAF---FRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~---~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
-+...|.-++..++..+|+....+||+..++....+ =.+.+||...|+|.+++++..+-+.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566788899999999999999887766543 34568889999999988776544433
No 348
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=7.3 Score=40.26 Aligned_cols=74 Identities=19% Similarity=0.083 Sum_probs=62.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHH
Q psy4385 324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK-VLQIDPNNKAAVQKLTQTKQ 397 (473)
Q Consensus 324 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~-al~l~P~~~~~~~~l~~~~~ 397 (473)
++..+..++....+......++..+|.+..++.+++.+....|....|+..+.. +....|+|..+...+-.+++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH
Confidence 677788888998999999999999999999999999999988887777766665 99999999888776643333
No 349
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.62 E-value=8.8 Score=38.04 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 357 RRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ 408 (473)
Q Consensus 357 ~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 408 (473)
.+..||+++++.+.|+....+.+.++|....-+-..+.|.+.+.++.++.+.
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999887777788888888888888775
No 350
>KOG0529|consensus
Probab=84.54 E-value=11 Score=37.20 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHhhhCCCCHHHHH-HHHH
Q psy4385 284 KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK--QAKPAKDQCDKAIELEPNNEKAFF-RRGN 360 (473)
Q Consensus 284 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~~~p~~~ka~~-~~g~ 360 (473)
-.+.-+..-..++ ..+|....+|+.+..++.+.. ++..-++.|+++|+.||.|..+|. ||-.
T Consensus 90 ~ld~eL~~~~~~L---------------~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV 154 (421)
T KOG0529|consen 90 LLDEELKYVESAL---------------KVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV 154 (421)
T ss_pred hhHHHHHHHHHHH---------------HhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence 4455555556666 667778889999999998876 478899999999999999998875 4433
Q ss_pred HHHhcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 361 AYLDLNE---PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 361 a~~~lg~---~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
+-..... ..+=+.+..+++.-++.|-.++.....+...+
T Consensus 155 ~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 155 VEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 3333333 67778888999998999988887777666533
No 351
>KOG0530|consensus
Probab=84.26 E-value=10 Score=35.32 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=67.9
Q ss_pred HcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL-NEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ 408 (473)
Q Consensus 330 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l-g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 408 (473)
+-..-..|++....+|.++|.|.-.|..|-.++..+ .+..+-++.+..+++-+|.|-+++.....+.+.++...-.|-.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 445567899999999999999998887776676665 4678889999999999999999988888888777644435555
Q ss_pred HHHHHhh
Q psy4385 409 VYANMFD 415 (473)
Q Consensus 409 ~~~~~f~ 415 (473)
..+.|+.
T Consensus 135 f~~~~l~ 141 (318)
T KOG0530|consen 135 FTKLMLD 141 (318)
T ss_pred HHHHHHh
Confidence 6666664
No 352
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.65 E-value=5.9 Score=33.36 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
....+++..+..|+|.-|...+..++..+|+|..++..+..+...+.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555444444443
No 353
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.62 E-value=30 Score=30.41 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN---NEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382 (473)
Q Consensus 315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 382 (473)
.....++..+|.-|.+.|+++.|++.|.++...... -...+++.-.+....++|..+...+.+|-.+-
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344678899999999999999999999998877533 34678888899999999999999999987764
No 354
>KOG3617|consensus
Probab=83.60 E-value=12 Score=40.41 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHh----------hhCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAI----------ELEPN----------NEKAFFRRGNAYLDLNEPELAEKDFQK 377 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al----------~~~p~----------~~ka~~~~g~a~~~lg~~~~A~~~~~~ 377 (473)
-..|+|.|.-+-..++.+.|+++|+++- .-+|. +.+.|-..|+-+...|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 4568888988888999999999998752 23443 335556678888889999999999987
Q ss_pred HHh
Q psy4385 378 VLQ 380 (473)
Q Consensus 378 al~ 380 (473)
|-.
T Consensus 938 A~D 940 (1416)
T KOG3617|consen 938 AKD 940 (1416)
T ss_pred hhh
Confidence 754
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.58 E-value=9.2 Score=34.59 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=56.0
Q ss_pred HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388 (473)
Q Consensus 327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~ 388 (473)
.+++-+...+|+.....-++-+|.+.-....+-+.|.-.|+|+.|...++.+-+++|+...-
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 35778889999999999999999999888888899999999999999999999999997543
No 356
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.49 E-value=27 Score=37.43 Aligned_cols=117 Identities=11% Similarity=-0.002 Sum_probs=84.6
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCC---C----CC----hhHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG---G----FE----GEQETERKKTLTACHLNAAMCLLKLKQAKPA 337 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~---~----~~----~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A 337 (473)
+-.+.-.|......+...+|.+++.++++.+.... . .+ .+...-+......+++..+.|.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 33444457777777877799999999998766532 1 11 1112234456677888889999999999999
Q ss_pred HHHHHHHhhhC---C------CCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCC
Q psy4385 338 KDQCDKAIELE---P------NNEKAFFRRGNAYLDLNEPELAEKDFQ--------KVLQIDPNN 385 (473)
Q Consensus 338 ~~~~~~al~~~---p------~~~ka~~~~g~a~~~lg~~~~A~~~~~--------~al~l~P~~ 385 (473)
......+.... | ..+..+|-.|..+...|+.+.|+..|. .+....+.+
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~ 445 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR 445 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence 99888777553 2 246789999999999999999999998 555555544
No 357
>KOG2047|consensus
Probab=83.27 E-value=24 Score=37.07 Aligned_cols=152 Identities=12% Similarity=0.098 Sum_probs=90.0
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCC--CCChhH-HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG--GFEGEQ-ETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK 343 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~--~~~~~~-~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 343 (473)
+.+..+.+-|..-....+++.|+...++|...-.... ..+..+ ....--....+|...+...-.+|-++.+...|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4577788888888889999999999999874422211 001000 1111122345566666666667777888888888
Q ss_pred HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHhhhhc
Q psy4385 344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID--PNNKAAVQK-LTQTKQKL-REQKIKEKQVYANMFDKFA 418 (473)
Q Consensus 344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~--P~~~~~~~~-l~~~~~~~-~~~~~~~k~~~~~~f~~~~ 418 (473)
+|.+.--.+....|.|..+.....|++|-+.|++.+.+- |+-.+++.. |.+..++. +..-+..+.+|.++++.+.
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 887777777777777777777777777777777776664 333444432 22222222 2223444555555555444
No 358
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=83.16 E-value=32 Score=34.09 Aligned_cols=102 Identities=12% Similarity=0.022 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHhcCCCCHH
Q psy4385 316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL----EPNNEKAFFRRGNAYLD---LNEPELAEKDFQK-VLQIDPNNKA 387 (473)
Q Consensus 316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~----~p~~~ka~~~~g~a~~~---lg~~~~A~~~~~~-al~l~P~~~~ 387 (473)
+.+....|+=.+|....+|+.-+...+..-.+ -++....-+.+|.|+.+ .|+.++|+..+.. .....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 34556678888899999999999888877666 34566777888999988 9999999999999 4555667789
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhh
Q psy4385 388 AVQKLTQTKQKLREQ--------KIKEKQVYANMFDKF 417 (473)
Q Consensus 388 ~~~~l~~~~~~~~~~--------~~~~k~~~~~~f~~~ 417 (473)
++-.++++++.+-.. ..+.-..|++.|..-
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 999999988776443 223335677777543
No 359
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.99 E-value=27 Score=37.43 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=81.5
Q ss_pred hhHHHHhhcchhh-hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 268 QGKLLKERGTTYF-KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 268 ~a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
.+.....+|..++ ...+++.|..+..+++.+.... .+......+.+-++.++.+.+... |...++++++
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---------~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~ 127 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERH---------RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE 127 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---------chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence 3667778888887 8889999999999999777541 344455666667788888888766 9999999997
Q ss_pred hCCC----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcC--CCCHHHH
Q psy4385 347 LEPN----NEKAFFRRGNAY--LDLNEPELAEKDFQKVLQID--PNNKAAV 389 (473)
Q Consensus 347 ~~p~----~~ka~~~~g~a~--~~lg~~~~A~~~~~~al~l~--P~~~~~~ 389 (473)
.-.. ...-.|++-.+. ...+++..|+..++....+. +.++.+.
T Consensus 128 ~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 128 DSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 7544 344445554332 22379999999999998876 3555443
No 360
>KOG2422|consensus
Probab=82.88 E-value=15 Score=37.88 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=81.7
Q ss_pred hhcchhh---hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh---
Q psy4385 274 ERGTTYF---KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL--- 347 (473)
Q Consensus 274 ~~G~~~~---~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~--- 347 (473)
+.|+.+| ....|++|...|.-|+...+.... -..-.-.|.....++.+|..+...|+.+.|.....++|-.
T Consensus 240 q~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v---~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~ 316 (665)
T KOG2422|consen 240 QKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNV---LILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDR 316 (665)
T ss_pred cCceeEEEeecchHHHHHHHHHHHHHhhcCCcce---eeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 3455554 345688888888888755433110 0000224778889999999999999999999888888721
Q ss_pred ------------------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHH
Q psy4385 348 ------------------EPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-NKAAVQ 390 (473)
Q Consensus 348 ------------------~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~-~~~~~~ 390 (473)
.|.| ..++|+.-+.+.+.|.+.-|.+.++..+.++|. |+-+..
T Consensus 317 a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l 381 (665)
T KOG2422|consen 317 ALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGIL 381 (665)
T ss_pred HhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHH
Confidence 2333 257778888888999999999999999999998 775433
No 361
>KOG1839|consensus
Probab=82.74 E-value=4.9 Score=45.30 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=85.3
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.+....+.|......+.+.+|.+ ..+++.+++... -.+++....+|..+|..+.+++++++|+..+.+|.-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii 1002 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACII 1002 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-------hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceee
Confidence 45566677777888888888888 667766655311 2678888999999999999999999999999988754
Q ss_pred C--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 348 E--------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 348 ~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
. |+...+|-+++...+.......|+..+.+++.+
T Consensus 1003 ~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1003 SERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred echhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 2 456788889998888888999999999998876
No 362
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=82.66 E-value=16 Score=34.82 Aligned_cols=98 Identities=20% Similarity=0.150 Sum_probs=70.4
Q ss_pred hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHhhhCCCC-HHHH
Q psy4385 281 KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK----LKQAKPAKDQCDKAIELEPNN-EKAF 355 (473)
Q Consensus 281 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~-~ka~ 355 (473)
...++..|+..|..+. ....+...+++|..|.. ..++.+|..+|.+|....-.. ..+.
T Consensus 89 v~~~~~~A~~~~~~~a-----------------~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 89 VSRDKTKAADWYRCAA-----------------ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred ccccHHHHHHHHHHHh-----------------hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 3445788888888555 33456688889999877 458999999999999886433 3448
Q ss_pred HHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385 356 FRRGNAYLDLN-------EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397 (473)
Q Consensus 356 ~~~g~a~~~lg-------~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 397 (473)
+++|.+|..-. +...|...|.++.... +..+...|+.++.
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~ 198 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYE 198 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 89998887741 2337899999888765 5666666665553
No 363
>KOG3617|consensus
Probab=82.56 E-value=5.8 Score=42.60 Aligned_cols=112 Identities=14% Similarity=-0.003 Sum_probs=72.3
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC------CCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDF------DGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD 342 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~------~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 342 (473)
-..+++.+..+-.+++...|+.+|+++-...-. +.+. .-+.--.......+|.-.|+..-..|+.+.|+.+|.
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~-~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPK-QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChH-HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 344556666666677777777777776421100 0000 000001122334677788888888899999998888
Q ss_pred HHhh---------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 343 KAIE---------------------LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 343 ~al~---------------------~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
.|-. ....+--|-|.+|..|...|++-+|+..|.+|..+
T Consensus 937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7742 23456678999999999999999999888776543
No 364
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=82.29 E-value=3.7 Score=38.40 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=63.5
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
...+.+.=..+...+++..|...-.+.+ .++|..+.-+.-+|.+|.+++.+..|+.+++..++..
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l---------------~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLL---------------DLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHH---------------hhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 3445556667888999999999999999 4455556667789999999999999999999999999
Q ss_pred CCCHHHHHHHHHH
Q psy4385 349 PNNEKAFFRRGNA 361 (473)
Q Consensus 349 p~~~ka~~~~g~a 361 (473)
|+.+.+-.-+.+.
T Consensus 246 P~~~~a~~ir~~l 258 (269)
T COG2912 246 PDDPIAEMIRAQL 258 (269)
T ss_pred CCchHHHHHHHHH
Confidence 9998776655543
No 365
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.10 E-value=11 Score=34.30 Aligned_cols=88 Identities=11% Similarity=-0.033 Sum_probs=51.4
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC----CCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF----DGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD 342 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~----~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 342 (473)
..|..+..++-.+-..++-+.....+++|+..+.. ...... .-....+.+-+|..+.++|++++|+..+.
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~------~~~~~~l~YLigeL~rrlg~~~eA~~~fs 189 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE------GMDEATLLYLIGELNRRLGNYDEAKRWFS 189 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC------CchHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44555555555555555544444444444433322 000000 11224578889999999999999999999
Q ss_pred HHhhhCCCCH-HHHHHHHH
Q psy4385 343 KAIELEPNNE-KAFFRRGN 360 (473)
Q Consensus 343 ~al~~~p~~~-ka~~~~g~ 360 (473)
+++.....+. ..+..+|.
T Consensus 190 ~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 190 RVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHcCCCCCCcHHHHHHHH
Confidence 9998754333 34444443
No 366
>KOG0292|consensus
Probab=81.81 E-value=9.2 Score=41.41 Aligned_cols=124 Identities=18% Similarity=0.175 Sum_probs=78.1
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-----cC--ChhHH-
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK-----LK--QAKPA- 337 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-----l~--~~~~A- 337 (473)
+.......+.|..+...|+|.+|+..|..+|-.++-..-.+.++..+.+.+...+...+.-..+. ++ ..+.+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 44566677889999999999999999999986555433334445555555554443322222211 22 23333
Q ss_pred -HHHHHHHhhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385 338 -KDQCDKAIELEPNN-EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV 389 (473)
Q Consensus 338 -~~~~~~al~~~p~~-~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~ 389 (473)
+..|=.-+.+.|-+ +-|+..--.+++++++|..|-....+.|++.|..+.+.
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 22222223455543 34444444678899999999999999999999877653
No 367
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.79 E-value=4 Score=34.39 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEP 368 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~ 368 (473)
......+|...+..|+|.-|++.++.++..+|+|..+..-++.+|.+++.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345567888889999999999999999999999999999999988877653
No 368
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.55 E-value=9.5 Score=28.53 Aligned_cols=65 Identities=17% Similarity=0.046 Sum_probs=46.4
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCC------CCChhHHHHHHHHHHHHHHHHHHHHHHc
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG------GFEGEQETERKKTLTACHLNAAMCLLKL 331 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~------~~~~~~~~~~~~~~~~~~~nla~~~~kl 331 (473)
+.|-...+.|..+-..|+.+.|+.+|+++++.+.... ....++|.....+....-.+++.+-.++
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777788888888999999999999998876511 2344566666666666666666665444
No 369
>KOG1839|consensus
Probab=81.31 E-value=22 Score=40.37 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=87.1
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
+.+..+..++..+...+++++|+..-.+|.-+.+.....+ .+.....|.|++...+..++...|+..+.+++.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d-------s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD-------SPNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC-------CHHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 4566778888899999999999999988886655433322 234567889999999999999999999999986
Q ss_pred h--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385 347 L--------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382 (473)
Q Consensus 347 ~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 382 (473)
+ .|.-.-..-+++..+..+++++-|+++++.|+.+.
T Consensus 1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 6 34444556788899999999999999999999864
No 370
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.11 E-value=35 Score=33.78 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=75.9
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC-----C-----CCCC----hhHHHHHHHHHHHHHHHHHHHHHHc
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF-----D-----GGFE----GEQETERKKTLTACHLNAAMCLLKL 331 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~-----~-----~~~~----~~~~~~~~~~~~~~~~nla~~~~kl 331 (473)
+-.+..+.+.+..+..+|++..|....++|+-.++. - .... -+....-+...-.+++.....+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 345677888888888899999999988888865542 0 0000 0000011223344555666778899
Q ss_pred CChhHHHHHHHHHhhhCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 332 KQAKPAKDQCDKAIELEPN-NEK-AFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 332 ~~~~~A~~~~~~al~~~p~-~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
|.|.-|.+.|.-.+.+||. ++- +++.+=...++.++|+--+..++....
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999999999998 664 445555555666777766655555443
No 371
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.86 E-value=4.6 Score=37.67 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=33.1
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 345 (473)
++|..|+..|+|++|+..|+.+......+ .=..+...++..+..|+.++|+.+..+..+-+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRRE---------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45666666666666666666664332211 1122344455556666666666666655554443
No 372
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=80.08 E-value=34 Score=33.83 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=64.2
Q ss_pred hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA 354 (473)
Q Consensus 275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka 354 (473)
.+....-.|+|+.|.+.|+.-+..- +...+-..+ |=....++|.++.|+++...+-..-|.-.=+
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~dP------------EtRllGLRg---LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA 190 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLDDP------------ETRLLGLRG---LYLEAQRLGAREAARHYAERAAEKAPQLPWA 190 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCh------------HHHHHhHHH---HHHHHHhcccHHHHHHHHHHHHhhccCCchH
Confidence 3445566789999999988776221 111111222 2233457899999999999999999988877
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 355 FFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 355 ~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
+.-.=...+..|+|+.|++.++....
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 77666778889999999988876544
No 373
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=79.98 E-value=26 Score=32.11 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=66.8
Q ss_pred hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCCh-hHHH-HHHHHHhh-hC-CCCHHH
Q psy4385 279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA-KPAK-DQCDKAIE-LE-PNNEKA 354 (473)
Q Consensus 279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~-~~A~-~~~~~al~-~~-p~~~ka 354 (473)
+|-.|+|+.|+....-||..--..+.. .....-...+.-..+-|....+.|+. +-+. ..+..+.. .+ |+.+.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~---f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQ---FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCcc---ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 356789999999999999763332211 00011223344455566666666652 2221 11222211 11 444444
Q ss_pred --HHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 355 --FFRRGNAYL---------DLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 355 --~~~~g~a~~---------~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
|--.|.+++ ..++...|+..|++|+.++|+- -+...+.++.++++
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 444555553 3467889999999999999874 45556666665554
No 374
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=79.74 E-value=5.9 Score=29.50 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=27.8
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhc
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLD 300 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~ 300 (473)
.+..+...|..+-+.|+|.+|+.+|.+||..+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 355667778889999999999999999997654
No 375
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.51 E-value=8.3 Score=28.63 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=27.7
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhc
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLD 300 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~ 300 (473)
.|..+...+..+-+.|+|.+|+.+|..|+.++-
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI 37 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 456677778888999999999999999997653
No 376
>KOG0985|consensus
Probab=79.43 E-value=13 Score=41.18 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=80.4
Q ss_pred HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC--
Q psy4385 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP-- 349 (473)
Q Consensus 272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p-- 349 (473)
....|..+|..+.|+.|.-.|...- -|..+|..+..+|+|..|.+..++|-...-
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~vS-----------------------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVS-----------------------NFAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 4567889999999999988887544 566788999999999999999888753310
Q ss_pred ---------C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385 350 ---------N--------------NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK 403 (473)
Q Consensus 350 ---------~--------------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 403 (473)
. ++.-+--+-.-|...|-|++-+..++.+|-++..+-...-+|+.++.+.+-.+
T Consensus 1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~k 1330 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEK 1330 (1666)
T ss_pred HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHH
Confidence 0 01122223345667889999999999999998777777888888887764433
No 377
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=79.20 E-value=5.6 Score=28.73 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=28.3
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhc
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD 300 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~ 300 (473)
+.|..+...|..+-+.|+|.+|+.+|.+|+..+.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3466677788888899999999999999997654
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.00 E-value=16 Score=35.59 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=56.3
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385 339 DQCDKAIELEPNNEKAFFRRGNAYLDLNE------------PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406 (473)
Q Consensus 339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~------------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 406 (473)
..+++.+.-+|+++.+|..+....-.+-. .+..+..|++||+.+|++...+..+-.+..++- ..+.-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHH
Confidence 45788899999999999998876655533 466788999999999999888776666655553 22333
Q ss_pred HHHHHHHhhhh
Q psy4385 407 KQVYANMFDKF 417 (473)
Q Consensus 407 k~~~~~~f~~~ 417 (473)
.+.+++++...
T Consensus 85 ~~~we~~l~~~ 95 (321)
T PF08424_consen 85 AKKWEELLFKN 95 (321)
T ss_pred HHHHHHHHHHC
Confidence 44566666553
No 379
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.51 E-value=13 Score=31.52 Aligned_cols=77 Identities=6% Similarity=-0.134 Sum_probs=58.4
Q ss_pred hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHH
Q psy4385 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFR 357 (473)
Q Consensus 278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~ 357 (473)
......+..++.......- -+.|....+..--+..++..|+|.+|+..++.+..-.+..+-+---
T Consensus 19 ~aL~~~d~~D~e~lLdALr---------------vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALR---------------VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHhcCCHHHHHHHHHHHH---------------HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence 3334666666665554433 4456667777888999999999999999999999988888877677
Q ss_pred HHHHHHhcCCHH
Q psy4385 358 RGNAYLDLNEPE 369 (473)
Q Consensus 358 ~g~a~~~lg~~~ 369 (473)
++.|+..+|+.+
T Consensus 84 ~A~CL~al~Dp~ 95 (153)
T TIGR02561 84 LALCLNAKGDAE 95 (153)
T ss_pred HHHHHHhcCChH
Confidence 888999988853
No 380
>KOG4459|consensus
Probab=77.66 E-value=8.9 Score=38.35 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=82.5
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCC-----------C--CCCh--hHHH----HHHHHHHHHHHHHHHHHHHc
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFD-----------G--GFEG--EQET----ERKKTLTACHLNAAMCLLKL 331 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~-----------~--~~~~--~~~~----~~~~~~~~~~~nla~~~~kl 331 (473)
..+..|...+..++|..++...++||+..... . .... +... .+..-....++.++.
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~----- 107 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAA----- 107 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHH-----
Confidence 45677888899999999999999999764310 0 0000 0000 000111222223333
Q ss_pred CChhHHHHHHHHHhhhCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385 332 KQAKPAKDQCDKAIELEPNN----------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401 (473)
Q Consensus 332 ~~~~~A~~~~~~al~~~p~~----------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 401 (473)
++.-|...+.-.|.. -..|-.+-.||++.|++..|++.-...+-.+|++..+...+.--...+..
T Consensus 108 -----Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~ 182 (471)
T KOG4459|consen 108 -----CLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGV 182 (471)
T ss_pred -----HHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCC
Confidence 333444443333322 25677788999999999999999999999999999998887766533332
Q ss_pred HH----HHHHHHHHHHhhhh
Q psy4385 402 QK----IKEKQVYANMFDKF 417 (473)
Q Consensus 402 ~~----~~~k~~~~~~f~~~ 417 (473)
.. +-+++-+..+|-+-
T Consensus 183 s~d~l~DlE~~~~~~~Fir~ 202 (471)
T KOG4459|consen 183 SEDELTDLERREHEQWFIRG 202 (471)
T ss_pred CcccccccccchHHHHHHHH
Confidence 22 22344555556443
No 381
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.53 E-value=14 Score=34.43 Aligned_cols=85 Identities=14% Similarity=0.028 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC--C----CHHHHHHHH
Q psy4385 286 ELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP--N----NEKAFFRRG 359 (473)
Q Consensus 286 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p--~----~~ka~~~~g 359 (473)
...+..+.+|+..+... ....+...+...+|.-|+++|+|++|+..++.++..-- . ....+-.+.
T Consensus 155 ~~iI~lL~~A~~~f~~~---------~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~ 225 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKY---------GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLL 225 (247)
T ss_pred HHHHHHHHHHHHHHHHh---------ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 44556666666444321 12345566777899999999999999999999965421 1 235677888
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q psy4385 360 NAYLDLNEPELAEKDFQKVL 379 (473)
Q Consensus 360 ~a~~~lg~~~~A~~~~~~al 379 (473)
.|+..+|+.+..+...-+.+
T Consensus 226 ~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 226 ECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 99999999888776655443
No 382
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=77.35 E-value=5.9 Score=37.38 Aligned_cols=62 Identities=15% Similarity=-0.066 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHh
Q psy4385 288 ACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLD 364 (473)
Q Consensus 288 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~ 364 (473)
|..+|.+|+ .+.|.....|+.+|..+...++.-.|+=+|-+++....-.+.|.-++...+.+
T Consensus 1 A~~~Y~~A~---------------~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAI---------------RLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHH---------------HH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHH---------------HhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 788999999 55666788999999999999999999999999997765567788888777766
No 383
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.75 E-value=4.1 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 322 LNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 322 ~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
+++|..|+.+|+++.|....++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 68999999999999999999999953
No 384
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.35 E-value=1.1e+02 Score=33.74 Aligned_cols=105 Identities=16% Similarity=0.004 Sum_probs=78.2
Q ss_pred HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351 (473)
Q Consensus 272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 351 (473)
..-.+-.+....+|.+|.....++...++..... ......+...--.|.+.+..++++.|++.++.++..=|.+
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~------~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHS------RQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCccc------chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 3345556677888888888888877665542111 1122334444556778888999999999999999887765
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385 352 -----EKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382 (473)
Q Consensus 352 -----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 382 (473)
+-++...|.+..-.|+|++|+...+.+.++.
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3677889999999999999999999988873
No 385
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=75.10 E-value=10 Score=28.09 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=28.6
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhc
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD 300 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~ 300 (473)
..|..+...|...-..|+|++|+.+|..||..+-
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4566777788888899999999999999997654
No 386
>KOG2581|consensus
Probab=74.99 E-value=12 Score=37.03 Aligned_cols=68 Identities=15% Similarity=0.019 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhh--CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIEL--EP--NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~--~p--~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~ 387 (473)
+.+-+=.+|+.-+.|+.|-....++.-- +. .++..+|.+|.+..-..+|..|.++|-.|++..|++..
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 4444456677778888888877776522 22 34567788999999999999999999999999998543
No 387
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.86 E-value=31 Score=25.47 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHH
Q psy4385 370 LAEKDFQKVLQIDPNNKAAVQ 390 (473)
Q Consensus 370 ~A~~~~~~al~l~P~~~~~~~ 390 (473)
+|++.|.+++...|+++....
T Consensus 31 ~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHHHhCCChHHHHH
Confidence 444556666667777765433
No 388
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.57 E-value=14 Score=34.96 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK 403 (473)
Q Consensus 353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 403 (473)
+.+...+..|...|.+.+|+...++++.++|-+...+..|..++..++..-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~i 330 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEI 330 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccch
Confidence 555667889999999999999999999999999999998888887776643
No 389
>KOG0889|consensus
Probab=74.22 E-value=32 Score=43.25 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHhcCCCC
Q psy4385 314 KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL----NE----PELAEKDFQKVLQIDPNN 385 (473)
Q Consensus 314 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l----g~----~~~A~~~~~~al~l~P~~ 385 (473)
+...+..+.-.|..+.+++++++|-..|..|++++-.-.|+|+..|.-+..+ .. -..|+.+|-+|.... ++
T Consensus 2808 ~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~ 2886 (3550)
T KOG0889|consen 2808 DRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NS 2886 (3550)
T ss_pred hHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cc
Confidence 4456778888999999999999999999999999999999999999765442 11 346888888888776 44
Q ss_pred HHHHHHHHHHHHHHH
Q psy4385 386 KAAVQKLTQTKQKLR 400 (473)
Q Consensus 386 ~~~~~~l~~~~~~~~ 400 (473)
..++..++++...+.
T Consensus 2887 skaRk~iakvLwLls 2901 (3550)
T KOG0889|consen 2887 SKARKLIAKVLWLLS 2901 (3550)
T ss_pred hhhHHHHHHHHHHHH
Confidence 567788887776663
No 390
>KOG1463|consensus
Probab=73.45 E-value=55 Score=31.80 Aligned_cols=117 Identities=19% Similarity=0.179 Sum_probs=80.2
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH--HHHHHHHHhhhC
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP--AKDQCDKAIELE 348 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~--A~~~~~~al~~~ 348 (473)
.-...|..+....+|.-|..+|-+|..-+..... ..+ -...+-.+=.|-+.++..++ ++-....+++.+
T Consensus 211 lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~-------~v~--A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~ 281 (411)
T KOG1463|consen 211 LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD-------DVK--ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYA 281 (411)
T ss_pred HHHhccceeecccccchHHHHHHHHHccccccCC-------cHH--HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhcc
Confidence 3345688888889999999999999865543211 011 12233334455566666665 455556788888
Q ss_pred CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 349 PNNEKAFFRRGNAYLD--LNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 349 p~~~ka~~~~g~a~~~--lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
.....|....+.++.+ +.+|+.|+.+|..=|.-|| -++..+..++..+
T Consensus 282 g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 282 GRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYDNL 331 (411)
T ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHHHH
Confidence 8899999999999866 4689999999998887554 5566666665554
No 391
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=73.30 E-value=14 Score=27.18 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=29.3
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhc
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD 300 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~ 300 (473)
+..+..+...|...-..|+|.+|+.+|..|+..+.
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34566777888889999999999999999997654
No 392
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=72.90 E-value=14 Score=27.13 Aligned_cols=35 Identities=29% Similarity=0.310 Sum_probs=27.7
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF 301 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~ 301 (473)
..+..+...|...-..|+|.+|+.+|..|+..+..
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34556666777888889999999999999976543
No 393
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=72.06 E-value=15 Score=27.15 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=28.3
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF 301 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~ 301 (473)
..|..+...|...-..|+|.+|..+|..+|+.+-.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34566667778888889999999999999987654
No 394
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=71.78 E-value=42 Score=33.35 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=43.0
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC--ChhHHHHHHH
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK--QAKPAKDQCD 342 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~ 342 (473)
.....+..+|++++|..|.+.|..++.-... .-.......+.+++.+|.... +|++|.+.++
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~----------~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLLS----------AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcccC----------hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3444666899999999999999999844221 012234566777777776644 6788888887
No 395
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.58 E-value=13 Score=21.48 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385 367 EPELAEKDFQKVLQIDPNNKAAVQKLT 393 (473)
Q Consensus 367 ~~~~A~~~~~~al~l~P~~~~~~~~l~ 393 (473)
+++.|...|++++...|.+..++....
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 456666666666666666666554443
No 396
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=70.54 E-value=26 Score=25.77 Aligned_cols=35 Identities=31% Similarity=0.285 Sum_probs=28.4
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF 301 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~ 301 (473)
..|..+...|..+-..|+|++|+.+|..|+..+..
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44566677788888899999999999999976643
No 397
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.11 E-value=20 Score=32.12 Aligned_cols=51 Identities=18% Similarity=0.140 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhhCCC----CHHHHHHHHHHHHhcCCHHHH
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPN----NEKAFFRRGNAYLDLNEPELA 371 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~----~~ka~~~~g~a~~~lg~~~~A 371 (473)
+.+.+|..|. ..+..+|+..+.++|++.+. |+..+..++.+++.+++++.|
T Consensus 143 lq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 143 LQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444444333 34455555555555555321 345555555555555555544
No 398
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.01 E-value=62 Score=32.32 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=45.5
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH--cCChhHHHHHHHHHh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK--LKQAKPAKDQCDKAI 345 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--l~~~~~A~~~~~~al 345 (473)
.+......+..+|+.++|..|.+.+...+.-++. ... ...+..++.+|.. .-+|.+|.+.++..+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~----------~~~---~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPG----------REE---YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc----------hhh---HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456667788899999999999999998853221 011 3456666666655 447788888887665
Q ss_pred h
Q psy4385 346 E 346 (473)
Q Consensus 346 ~ 346 (473)
.
T Consensus 197 ~ 197 (379)
T PF09670_consen 197 K 197 (379)
T ss_pred H
Confidence 4
No 399
>KOG1497|consensus
Probab=68.91 E-value=1.1e+02 Score=29.42 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC------CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH--hcCCC
Q psy4385 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP------NNE--KAFFRRGNAYLDLNEPELAEKDFQKVL--QIDPN 384 (473)
Q Consensus 315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p------~~~--ka~~~~g~a~~~lg~~~~A~~~~~~al--~l~P~ 384 (473)
.....+...+|..|-+.++|..|.+... ++.++. .+. ..+.+.|.+|+..++-.+|..+..++- ..+..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 3457788999999999999999877553 233332 112 345689999999999999999998873 33557
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy4385 385 NKAAVQKLTQTKQKLREQKIK 405 (473)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~~ 405 (473)
|....-.+..|+.+.-.++.+
T Consensus 179 Ne~Lqie~kvc~ARvlD~krk 199 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRK 199 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777666544443
No 400
>KOG2114|consensus
Probab=68.01 E-value=49 Score=35.96 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=29.5
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF 301 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~ 301 (473)
.+..++..|.-+|++|+|++|...|-++|..++.
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 4566778899999999999999999999977654
No 401
>KOG1914|consensus
Probab=67.76 E-value=33 Score=35.35 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 308 EQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
.+..+.+|.+..+|+.+-.-+.-. -++++...|++.+..-|..+.+|--.....+...+|+.-...|.++|.-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 455566777777777665544333 7777777777777777777777777777777777777777777777653
No 402
>KOG0546|consensus
Probab=67.70 E-value=2.8 Score=40.46 Aligned_cols=79 Identities=16% Similarity=0.057 Sum_probs=57.2
Q ss_pred hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA 354 (473)
Q Consensus 275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka 354 (473)
.+...++.+.+..|+..-..++ ..++....+|+.+++.++.+.++++|+++...+....|++...
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~---------------~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEAL---------------RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred hHHhcccccCCCcceecccccc---------------ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 4445556666666665555555 3455678899999999999999999999999999999998766
Q ss_pred HHHHHHHHHhcCCH
Q psy4385 355 FFRRGNAYLDLNEP 368 (473)
Q Consensus 355 ~~~~g~a~~~lg~~ 368 (473)
.-.+..+-....++
T Consensus 346 ~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 346 EEELENVRQKKKQY 359 (372)
T ss_pred HHHHHHhhhHHHHH
Confidence 55554444444433
No 403
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.00 E-value=7.3 Score=28.81 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=28.7
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF 301 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~ 301 (473)
+.+..+...|...-..|+|++|+..|..|+.++..
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34566777788888999999999999999977654
No 404
>KOG2396|consensus
Probab=66.81 E-value=42 Score=34.27 Aligned_cols=81 Identities=10% Similarity=-0.014 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANM 413 (473)
Q Consensus 334 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 413 (473)
...-...|..|+..-+.+++.|.+...-..+.+.+.+-...|.++|..+|++++++..-+.-....+..-+..|+++.+.
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 45567788999999899999999988777777779999999999999999999988766655555544444555554444
Q ss_pred h
Q psy4385 414 F 414 (473)
Q Consensus 414 f 414 (473)
+
T Consensus 167 L 167 (568)
T KOG2396|consen 167 L 167 (568)
T ss_pred h
Confidence 4
No 405
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.39 E-value=33 Score=34.75 Aligned_cols=96 Identities=8% Similarity=-0.019 Sum_probs=64.8
Q ss_pred hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHH
Q psy4385 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFR 357 (473)
Q Consensus 278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~ 357 (473)
.....|+...|-+....+++-. +..+....-++..+..+|.|+.|.+...-+-.+-..-.++.-.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~---------------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~ 362 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQ---------------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRC 362 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhC---------------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHH
Confidence 3456678888887777777433 3334455567778888999999888877665555555666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385 358 RGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388 (473)
Q Consensus 358 ~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~ 388 (473)
+-..+..++++++|.....-.|.-+-+++++
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei 393 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLSNEIEDEEV 393 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhccccCChhh
Confidence 6667778888888877666666544444443
No 406
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=64.11 E-value=58 Score=27.19 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHHH-HcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 320 CHLNAAMCLL-KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 320 ~~~nla~~~~-kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
-|.++|.-++ +.+.-++--+.+...+..+..++..++.+|.||.++|+..+|-..+.+|.+-
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4556666554 4444444445555555566678999999999999999999999999988753
No 407
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.91 E-value=12 Score=27.78 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=8.4
Q ss_pred hcCCHHHHHHHHHHHHh
Q psy4385 364 DLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 364 ~lg~~~~A~~~~~~al~ 380 (473)
..|+|++|+..|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 44555555555554443
No 408
>KOG2041|consensus
Probab=63.86 E-value=24 Score=37.47 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=25.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy4385 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376 (473)
Q Consensus 323 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~ 376 (473)
|...|++++.+|++-... ...-|++.+.+-.+|.++...|--++|...|-
T Consensus 827 ~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred hHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 344455555554432211 12235565555556666666666666655543
No 409
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=63.53 E-value=32 Score=25.24 Aligned_cols=17 Identities=6% Similarity=0.102 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy4385 368 PELAEKDFQKVLQIDPN 384 (473)
Q Consensus 368 ~~~A~~~~~~al~l~P~ 384 (473)
|.+|+..|.+++..+|+
T Consensus 31 Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 31 YKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 34455555666666665
No 410
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=63.23 E-value=18 Score=34.30 Aligned_cols=66 Identities=11% Similarity=-0.020 Sum_probs=56.6
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
.....+..+...+...++++.++...++-+ .++|.+-.+|..+=..|++.|+...|+..|.+.-.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li---------------~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLI---------------ELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHH---------------hcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 346677788888999999999999999999 66677788899999999999999999999988755
Q ss_pred h
Q psy4385 347 L 347 (473)
Q Consensus 347 ~ 347 (473)
.
T Consensus 216 ~ 216 (280)
T COG3629 216 T 216 (280)
T ss_pred H
Confidence 4
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.15 E-value=35 Score=30.29 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384 (473)
Q Consensus 334 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~ 384 (473)
....++...+.++..| ++..+.+++.++..+|+.++|.....++..+-|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455666777788888 6788899999999999999999999999999994
No 412
>KOG1464|consensus
Probab=63.06 E-value=82 Score=29.63 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=69.1
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK 353 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 353 (473)
.+|+.+|..++|.+-....++.-..+..+... +...--.....+|----+.|-..++-.+-...|.++|.+...-+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe---dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE---DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCc---hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 47888999998887766666655444432221 111111223344444456677788888888889999988754433
Q ss_pred HHH------HHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 354 AFF------RRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 354 a~~------~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
.+. .-|..+++-|+|++|..+|-.|++-
T Consensus 227 PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 227 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 221 2368889999999999999999875
No 413
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=62.92 E-value=9.6 Score=35.37 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=61.6
Q ss_pred chhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC---C--
Q psy4385 277 TTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN---N-- 351 (473)
Q Consensus 277 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~---~-- 351 (473)
.+++..++.-.|+..|...+.--+..-..-- .-..-.-..|+....|+. --....|.++.+.||-+... -
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~----~~a~~lEk~~~~Fs~~~s-~~~~~n~~e~~d~ALm~Ae~r~D~~~ 77 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALI----FKAACLEKLYFGFSDWHS-DATMENAKELLDKALMTAEGRGDRSK 77 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEe----ehhhhHHHHHhhhhhhhc-ccChhhHHHHHHHHHHhhhccCCcce
Confidence 3455556666677777766533222100000 000011223444444442 23456788999999865321 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385 352 -EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385 (473)
Q Consensus 352 -~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~ 385 (473)
--+-++++.+|+.+.+|+.|..+|..|+.+.-++
T Consensus 78 IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 78 IGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred eeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 2356899999999999999999999999885443
No 414
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.83 E-value=19 Score=20.62 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNA 361 (473)
Q Consensus 332 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 361 (473)
++++.|...|++++...|.++..|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467889999999999999998888776543
No 415
>KOG1464|consensus
Probab=62.15 E-value=21 Score=33.45 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=44.3
Q ss_pred HHcCChhHHHHHHHHHhhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 329 LKLKQAKPAKDQCDKAIELEPNN----EKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 329 ~kl~~~~~A~~~~~~al~~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
++..++++|+..|.+++++.+.. .||+-..-.+++++++|++-...|.+.|..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35668999999999999999874 488888899999999999888887776643
No 416
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=61.37 E-value=8.7 Score=34.30 Aligned_cols=61 Identities=21% Similarity=0.093 Sum_probs=47.1
Q ss_pred HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q psy4385 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAK 338 (473)
Q Consensus 266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 338 (473)
++.++....+|..|. ..+..+|+..|.+++.+..... ..++..+..||..++++++++.|-
T Consensus 138 l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~-----------~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 138 LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD-----------NFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC-----------CCCHHHHHHHHHHHHHhcchhhhh
Confidence 344556666665554 6889999999999998876532 345778899999999999999884
No 417
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=60.71 E-value=93 Score=25.51 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH----Hhc
Q psy4385 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPN---------------NEKAFFRRGNAYLDLNEPELAEKDFQKV----LQI 381 (473)
Q Consensus 321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~---------------~~ka~~~~g~a~~~lg~~~~A~~~~~~a----l~l 381 (473)
+.++|...++.+++-.++-+|++|+.+-.+ .+-.-.|+|..+...|+-+=.+++++.| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888899999999999999999865211 1245578999999999999999999765 555
Q ss_pred CCCCH-----HHHHHHHHHHHHHH
Q psy4385 382 DPNNK-----AAVQKLTQTKQKLR 400 (473)
Q Consensus 382 ~P~~~-----~~~~~l~~~~~~~~ 400 (473)
-|..+ .....|+-|...+-
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl 107 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALL 107 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHH
Confidence 55432 33556666665543
No 418
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=60.47 E-value=53 Score=31.86 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELE--PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~--p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 394 (473)
.-+|+|.+.-+..-...++...+....-. ......+--+|-.+.++|+-++|...|++|+.+.++..+....+..
T Consensus 331 V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 331 VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 45689988888877888887776665441 2233455578999999999999999999999999887665444333
No 419
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=60.30 E-value=58 Score=24.17 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcCCCCH
Q psy4385 368 PELAEKDFQKVLQIDPNNK 386 (473)
Q Consensus 368 ~~~A~~~~~~al~l~P~~~ 386 (473)
|.+|+..|..+++..|+..
T Consensus 29 Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 29 YQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHHHhhCCCHH
Confidence 3345555666666677543
No 420
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=60.13 E-value=24 Score=20.72 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHH
Q psy4385 337 AKDQCDKAIELEPNNEKAFFRRGNAYL 363 (473)
Q Consensus 337 A~~~~~~al~~~p~~~ka~~~~g~a~~ 363 (473)
.++.+..++..+|.|..+|..|--++.
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHH
Confidence 356667777777777777766554443
No 421
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=59.50 E-value=1.3e+02 Score=30.37 Aligned_cols=102 Identities=17% Similarity=0.057 Sum_probs=68.2
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCCh--------------hH
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA--------------KP 336 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~--------------~~ 336 (473)
..+.+|..+|-.++|+.|...|+.+.+-+..+ ..-...+.++--.|.|++..+.. +.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D---------kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~ 280 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND---------KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLEN 280 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc---------hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence 56678999999999999999999998655432 22333455666667777776633 33
Q ss_pred HHHHHHHH----hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 337 AKDQCDKA----IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 337 A~~~~~~a----l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
|...|.++ ......-..+.+..+.++...+.|.+|...+-+....
T Consensus 281 A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 281 AYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 44444442 1122233466677778888899988888877777655
No 422
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.85 E-value=1e+02 Score=28.09 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=48.3
Q ss_pred hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK 353 (473)
Q Consensus 278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 353 (473)
.+.+.+...+|+...+.-+ ..+|.+..+..-+=..+.-.|+|++|...|+-+-++.|+..+
T Consensus 10 eLL~~~sL~dai~~a~~qV---------------kakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQV---------------KAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHhccHHHHHHHHHHHH---------------hcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 4567788899999888888 444555556556666778899999999999999999998754
No 423
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.52 E-value=26 Score=30.64 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=68.5
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH-hhhCC
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA-IELEP 349 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a-l~~~p 349 (473)
+....|......|+-..|+..|..+-.--+. -....-.+.+.-|..+.-.|.|++...-.+.. -.-+|
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~-----------P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~ 164 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSI-----------PQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCC-----------cchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCCh
Confidence 3445567778899999999999987643221 11222345556677777888898876655432 23344
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
--..|.--+|.+-++-|+|..|...|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4556666788999999999999999998876
No 424
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.73 E-value=16 Score=33.80 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHhh
Q psy4385 285 FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK-LKQAKPAKDQCDKAIE 346 (473)
Q Consensus 285 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 346 (473)
-+.|...|++|+.+....-+ ..+|....+.+|.+..|+. +++.++|+..+++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~-------~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELP-------PTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-------TTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccC-------CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36788889998876543111 3367778888888887755 8888999888887753
No 425
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.12 E-value=1.6e+02 Score=27.98 Aligned_cols=64 Identities=14% Similarity=0.042 Sum_probs=43.6
Q ss_pred HhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385 273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK 343 (473)
Q Consensus 273 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 343 (473)
.+++|.+.+.+++++|+..|.+.+.--- +-. +......-...++++..|...|+|..--+....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~-----s~d--ek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~ 70 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGV-----SKD--EKTLNEQEATVLELFKLYVSKGDYCSLGDTITS 70 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCC-----Chh--hhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh
Confidence 3567788899999999999999884311 101 122233455678999999999988765554433
No 426
>KOG3783|consensus
Probab=57.10 E-value=66 Score=33.18 Aligned_cols=74 Identities=18% Similarity=0.083 Sum_probs=58.5
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 350 (473)
-+...+..+.-.|+-+.|+..++.++. ...+.....+++-+|.++.-+.+|.+|..++....... +
T Consensus 269 wll~~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-d 334 (546)
T KOG3783|consen 269 WLLMEARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-D 334 (546)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-h
Confidence 344556666677777888888888884 26777888999999999999999999999998887764 6
Q ss_pred CHHHHHHH
Q psy4385 351 NEKAFFRR 358 (473)
Q Consensus 351 ~~ka~~~~ 358 (473)
+.+|+|..
T Consensus 335 WS~a~Y~Y 342 (546)
T KOG3783|consen 335 WSHAFYTY 342 (546)
T ss_pred hhHHHHHH
Confidence 77777754
No 427
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.92 E-value=33 Score=35.02 Aligned_cols=26 Identities=15% Similarity=0.000 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCDKA 344 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~~a 344 (473)
..|..+|...+..|+++-|..++.++
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 35666666666666666666666554
No 428
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.09 E-value=1.4e+02 Score=26.22 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=74.1
Q ss_pred cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC--C--
Q psy4385 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN--N-- 351 (473)
Q Consensus 276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~--~-- 351 (473)
+..+-+.+..++|+..|...-+. .+ ......+.+..|.+....|+-..|+.+|+.+-.-.|. -
T Consensus 65 AL~lA~~~k~d~Alaaf~~lekt-g~------------g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~r 131 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKT-GY------------GSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGR 131 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhc-CC------------CcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhh
Confidence 44456778889999988776532 11 1223556778889999999999999999998776543 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHH
Q psy4385 352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQID--PNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~--P~~~~~~~~l~~~~~~~~ 400 (473)
--|..|-+.++...|-|++-..-.+ .|.-+ |--..++..|+....+-.
T Consensus 132 d~ARlraa~lLvD~gsy~dV~srve-pLa~d~n~mR~sArEALglAa~kag 181 (221)
T COG4649 132 DLARLRAAYLLVDNGSYDDVSSRVE-PLAGDGNPMRHSAREALGLAAYKAG 181 (221)
T ss_pred HHHHHHHHHHHhccccHHHHHHHhh-hccCCCChhHHHHHHHHhHHHHhcc
Confidence 2466777888889999987655443 23322 222356667776655443
No 429
>KOG4014|consensus
Probab=55.58 E-value=1.1e+02 Score=26.99 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=49.7
Q ss_pred hHHHHhhcchhh-----hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc-----C--ChhH
Q psy4385 269 GKLLKERGTTYF-----KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL-----K--QAKP 336 (473)
Q Consensus 269 a~~~~~~G~~~~-----~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-----~--~~~~ 336 (473)
+...+..|+-++ ..++...|++.|..|... ..+.+..++++.+..- . +..+
T Consensus 68 ~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-----------------n~~~aC~~~gLl~~~g~~~r~~dpd~~K 130 (248)
T KOG4014|consen 68 PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-----------------NIPQACRYLGLLHWNGEKDRKADPDSEK 130 (248)
T ss_pred cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-----------------CCHHHHhhhhhhhccCcCCccCCCCcHH
Confidence 344455555444 345678888888887732 2355666777766432 2 3678
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHhc
Q psy4385 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDL 365 (473)
Q Consensus 337 A~~~~~~al~~~p~~~ka~~~~g~a~~~l 365 (473)
|.++++++..++ +..+-|.++..|+.-
T Consensus 131 a~~y~traCdl~--~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 131 AERYMTRACDLE--DGEACFLLSTMYMGG 157 (248)
T ss_pred HHHHHHHhccCC--CchHHHHHHHHHhcc
Confidence 999999998875 556667776666543
No 430
>KOG3616|consensus
Probab=55.39 E-value=38 Score=36.20 Aligned_cols=98 Identities=13% Similarity=-0.004 Sum_probs=46.6
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCC-CCChhHH---------HHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDG-GFEGEQE---------TERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK 343 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~-~~~~~~~---------~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 343 (473)
..|.-+-..|+|+.|+.+|-+|-.+..... .....+| .+-+......|-..|.-|...++|+.|.+.|.+
T Consensus 711 ~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 711 AWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence 346666777888888877766542221100 0000000 011111223344556666666677777666655
Q ss_pred HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy4385 344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379 (473)
Q Consensus 344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al 379 (473)
+=..+ .| -..|-+.|+|+.|.+.-.++.
T Consensus 791 ~~~~~----da----i~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 791 ADLFK----DA----IDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred cchhH----HH----HHHHhccccHHHHHHHHHHhc
Confidence 42211 11 133445666766655544443
No 431
>PF12854 PPR_1: PPR repeat
Probab=54.05 E-value=30 Score=20.88 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy4385 351 NEKAFFRRGNAYLDLNEPELAEKDFQ 376 (473)
Q Consensus 351 ~~ka~~~~g~a~~~lg~~~~A~~~~~ 376 (473)
|...|..+-.+|.+.|+.++|.+.|+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455556666666777777766664
No 432
>KOG0529|consensus
Probab=54.00 E-value=2.2e+02 Score=28.51 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=58.4
Q ss_pred CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE--PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ 402 (473)
Q Consensus 332 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~--~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 402 (473)
...+.-+.....+|+.+|+..-+|+.|..++.+... +..=++.+.++|++||.|-.++....-+.......
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 356677788888999999999999999999987764 68888999999999999988877776666555444
No 433
>PF15469 Sec5: Exocyst complex component Sec5
Probab=53.62 E-value=35 Score=30.04 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=18.8
Q ss_pred hhhcccHHHHHHHHHHHhhhhc
Q psy4385 279 YFKQDKFELACRNYKKAIPYLD 300 (473)
Q Consensus 279 ~~~~~~~~~A~~~y~~al~~~~ 300 (473)
+.+.|+|+.|+..|.+|-.++.
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~ 117 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFE 117 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHH
Confidence 4688999999999999986654
No 434
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.03 E-value=30 Score=25.87 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHhhhC
Q psy4385 334 AKPAKDQCDKAIELE 348 (473)
Q Consensus 334 ~~~A~~~~~~al~~~ 348 (473)
|+.|....++||..|
T Consensus 5 ~~~A~~~I~kaL~~d 19 (79)
T cd02679 5 YKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHhhhh
Confidence 455555555555554
No 435
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=52.62 E-value=46 Score=34.02 Aligned_cols=54 Identities=24% Similarity=0.267 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
...+.|| +++|+.+.|.+.+ ...++...|-++|.+.+..|+++-|..+|+++-.
T Consensus 322 ~~rFeLA---l~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 322 DHRFELA---LQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHH---HHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHhHHH---HhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 3444444 5677777776643 2344778999999999999999999999998743
No 436
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=52.06 E-value=10 Score=36.18 Aligned_cols=64 Identities=6% Similarity=0.169 Sum_probs=50.4
Q ss_pred hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHH-HHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHH
Q psy4385 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLN-AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFF 356 (473)
Q Consensus 278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~n-la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~ 356 (473)
-..+.+-|..-...|.+++ ..+|.++.+|.. .+.-+.-.++++.|...+.++|+++|.+++.|+
T Consensus 116 Y~~k~k~y~~~~nI~~~~l---------------~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 116 YVIKKKMYGEMKNIFAECL---------------TKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------hcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3345567777778888888 777888888876 344466778999999999999999999998764
No 437
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=51.99 E-value=47 Score=23.80 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=6.3
Q ss_pred HHHHHHHHHhcCC
Q psy4385 371 AEKDFQKVLQIDP 383 (473)
Q Consensus 371 A~~~~~~al~l~P 383 (473)
|+..|..++...|
T Consensus 31 ai~~l~~~~~~~~ 43 (69)
T PF04212_consen 31 AIEYLMQALKSES 43 (69)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHhccCC
Confidence 3444445555554
No 438
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=51.84 E-value=69 Score=36.02 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK-------AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k-------a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~ 388 (473)
+.-|+..|.+|.++++|++-++++.-|++.-|+.+. ..||+-.+.+... ..|+...-.++.+-|.....
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 552 PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEKISS 627 (932)
T ss_pred chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCcccccc
Confidence 345888999999999999999999999999988773 4455555554433 35677777888888876543
No 439
>KOG1258|consensus
Probab=51.80 E-value=2.4e+02 Score=29.66 Aligned_cols=54 Identities=19% Similarity=-0.055 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEK 373 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~ 373 (473)
+++--|..--..|++..|...+++..+--|....+-++......++|+.+.+..
T Consensus 368 i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 368 IHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 444444444556788888888888887778888888888888888888877773
No 440
>KOG1258|consensus
Probab=51.06 E-value=3.2e+02 Score=28.76 Aligned_cols=105 Identities=8% Similarity=-0.058 Sum_probs=78.9
Q ss_pred hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE 348 (473)
Q Consensus 269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 348 (473)
...+...-......|++....-.|++++- -=.+....|.+.+.-....|+..-|-....++.++.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli---------------~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI---------------PCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh---------------HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 34455555555688999999999999882 223456677888887778899988888888888775
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385 349 -PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388 (473)
Q Consensus 349 -p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~ 388 (473)
|..+-.....+..-...|+++.|...|++...-.|+...+
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence 4555555666666777899999999999999888886554
No 441
>KOG0739|consensus
Probab=49.49 E-value=71 Score=30.60 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=28.0
Q ss_pred HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhc
Q psy4385 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD 300 (473)
Q Consensus 265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~ 300 (473)
.+..+..+...+...-+.++|.+|...|..|+.++-
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHH
Confidence 445566666677777788999999999999997653
No 442
>COG4499 Predicted membrane protein [Function unknown]
Probab=49.42 E-value=1.2e+02 Score=29.84 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHH-HHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy4385 317 LTACHLNAAMCLLKLKQAKPAKDQ-CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDF 375 (473)
Q Consensus 317 ~~~~~~nla~~~~kl~~~~~A~~~-~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~ 375 (473)
--.+.+.+|..|........+-.- ..-.|.+..+.-..+| -++...|+|++|+..-
T Consensus 280 Pksv~Y~LA~SYV~~e~L~~~kkeNi~NnislkSd~~~llY---Wi~~GRGe~~eAinIA 336 (434)
T COG4499 280 PKSVQYILAVSYVNLEDLTTTKKENILNNISLKSDDNYLLY---WIYSGRGEFKEAINIA 336 (434)
T ss_pred cHHHHHHHHHHHhhccccchHHHHHHhhccccccchhHHHH---HHHhcCccHHHHhhHH
Confidence 345778888888887665544321 1111222222222222 2566789999998654
No 443
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=49.31 E-value=1.6e+02 Score=30.54 Aligned_cols=96 Identities=13% Similarity=0.265 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 397 (473)
-.++..+-..+-....+.-....|+++|.+. .+--+|+.+++||... .-+.-...+++..+.|-++...-.+|...++
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3344444344444455667778999999986 4567999999999998 5566778889999999898888888988888
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy4385 398 KLREQKIKEKQVYANMFDKF 417 (473)
Q Consensus 398 ~~~~~~~~~k~~~~~~f~~~ 417 (473)
+.+.+.. ...|+++.-+.
T Consensus 144 kik~sk~--a~~f~Ka~yrf 161 (711)
T COG1747 144 KIKKSKA--AEFFGKALYRF 161 (711)
T ss_pred HhchhhH--HHHHHHHHHHh
Confidence 7644332 23445544443
No 444
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=47.84 E-value=64 Score=23.53 Aligned_cols=17 Identities=12% Similarity=0.047 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy4385 368 PELAEKDFQKVLQIDPN 384 (473)
Q Consensus 368 ~~~A~~~~~~al~l~P~ 384 (473)
|.+|+..|..++...|+
T Consensus 29 Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 29 YKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 33444555555555655
No 445
>KOG3807|consensus
Probab=47.73 E-value=2e+02 Score=28.01 Aligned_cols=58 Identities=19% Similarity=0.082 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy4385 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNN--EKAFFRRGNAYLDLNEPELAEKDFQKV 378 (473)
Q Consensus 321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~lg~~~~A~~~~~~a 378 (473)
-..+|+|..|+|+..+|++.+....+--|-. ...+-++-.+++.+.-|.+....+-+.
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467888888888888888888877766632 133445666666666665555444444
No 446
>KOG2422|consensus
Probab=47.63 E-value=3.6e+02 Score=28.40 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=24.5
Q ss_pred HHHHHcCChhHHHHHHHHHhhhCCC-CHHH
Q psy4385 326 MCLLKLKQAKPAKDQCDKAIELEPN-NEKA 354 (473)
Q Consensus 326 ~~~~kl~~~~~A~~~~~~al~~~p~-~~ka 354 (473)
..+.+.|.+.-|.++|.-.+.++|. ++-+
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~ 379 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLG 379 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchh
Confidence 4455789999999999999999998 6644
No 447
>KOG3783|consensus
Probab=47.27 E-value=1.8e+02 Score=30.10 Aligned_cols=65 Identities=17% Similarity=0.096 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhh------CC-CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCC
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIEL------EP-NNEKAFFRRGNAYLDLNE-PELAEKDFQKVLQIDPN 384 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~------~p-~~~ka~~~~g~a~~~lg~-~~~A~~~~~~al~l~P~ 384 (473)
-++-+|.|+..+|+...|..++..+++- ++ --+-|+|-+|..|..++. ..+|.+.+.+|-....+
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 4667899999999999999999888733 11 246899999999999999 99999999999876644
No 448
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.26 E-value=99 Score=21.81 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=37.6
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQ 340 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 340 (473)
..|..+|..|+|-+|....+..=...+.. ........+...-|..+++.|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~---------~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGP---------ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CC---------HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcc---------hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 35677899999999999988875322110 23334444555556667788898888764
No 449
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=47.20 E-value=87 Score=23.36 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=39.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4385 361 AYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFA 418 (473)
Q Consensus 361 a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~ 418 (473)
.+.++..++=|+.++...|.-+|+|..|.........+. .+.++.|.+.|.-+.
T Consensus 4 LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~----~~l~~~Ye~~yGPLt 57 (78)
T PF12652_consen 4 LLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQR----KQLKKEYEKRYGPLT 57 (78)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHH----HHHHHHHHHHhCCCc
Confidence 445556677789999999999999999988877776554 345556666665443
No 450
>KOG4563|consensus
Probab=47.02 E-value=30 Score=33.73 Aligned_cols=58 Identities=22% Similarity=0.150 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELE--------PNNEKAFFRRGNAYLDLNEPELAEKDF 375 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~ 375 (473)
..-+...|.-++.+++|+.|...+..|..+. -++..++|.+|.+++.+++++.++-..
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3345567888899999999999999998763 246689999999999999998877443
No 451
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=45.91 E-value=1.4e+02 Score=23.64 Aligned_cols=51 Identities=16% Similarity=0.055 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcC
Q psy4385 316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN 366 (473)
Q Consensus 316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg 366 (473)
......+..|...+-.|+|..|.+...++-+..+...-+|.--+++-..+|
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 334455566677777788888888888776665555555555555555444
No 452
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=45.01 E-value=1.9e+02 Score=29.53 Aligned_cols=100 Identities=12% Similarity=-0.054 Sum_probs=70.0
Q ss_pred HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350 (473)
Q Consensus 271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 350 (473)
.+-..|-.+.+++++.+|...|.+..+-.... -.-..-.++.++-...+-+++.+.-.......-+..|+
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~----------~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~ 77 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESS----------PFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGK 77 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcc----------hHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 34557888999999999999999988433321 11222345566665566666666665555555666787
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
.+...+-.|...++.+.|..|+..+..-..
T Consensus 78 s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~ 107 (549)
T PF07079_consen 78 SAYLPLFKALVAYKQKEYRKALQALSVWKE 107 (549)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777777888888999999999988865443
No 453
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.62 E-value=44 Score=20.18 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHhhhCCCCHHHHHHHH
Q psy4385 334 AKPAKDQCDKAIELEPNNEKAFFRRG 359 (473)
Q Consensus 334 ~~~A~~~~~~al~~~p~~~ka~~~~g 359 (473)
++.|...|++.+...|+ ++.|.+.|
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 44455555555544432 44444433
No 454
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=44.50 E-value=1.3e+02 Score=31.36 Aligned_cols=60 Identities=8% Similarity=0.152 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhh-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHH
Q psy4385 336 PAKDQCDKAIEL-----EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI------DPNNKAAVQKLTQT 395 (473)
Q Consensus 336 ~A~~~~~~al~~-----~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l------~P~~~~~~~~l~~~ 395 (473)
.++..|.+|+.. +-.++..|-.+|-.|++.++|.+|+..+-.|-.. ..++.++++++-.+
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 355555555533 3456677778888899999999999998877554 23566777665544
No 455
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.70 E-value=97 Score=25.41 Aligned_cols=82 Identities=6% Similarity=-0.042 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh--CCCCHHHHHHHHHHHH
Q psy4385 286 ELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL--EPNNEKAFFRRGNAYL 363 (473)
Q Consensus 286 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~--~p~~~ka~~~~g~a~~ 363 (473)
..-...++++++.+...... .-++-...++...|.. ...+.+.|...... .-..+.-|-..|..+.
T Consensus 43 ~~L~~lLer~~~~f~~~~~Y------~nD~RylkiWi~ya~~------~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le 110 (126)
T PF08311_consen 43 SGLLELLERCIRKFKDDERY------KNDERYLKIWIKYADL------SSDPREIFKFLYSKGIGTKLALFYEEWAEFLE 110 (126)
T ss_dssp HHHHHHHHHHHHHHTTSGGG------TT-HHHHHHHHHHHTT------BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHhh------cCCHHHHHHHHHHHHH------ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 33445566666555432111 1233344455544432 33788888877654 4566777778999999
Q ss_pred hcCCHHHHHHHHHHHH
Q psy4385 364 DLNEPELAEKDFQKVL 379 (473)
Q Consensus 364 ~lg~~~~A~~~~~~al 379 (473)
..|++.+|.+.|++++
T Consensus 111 ~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 111 KRGNFKKADEIYQLGI 126 (126)
T ss_dssp HTT-HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhC
Confidence 9999999999998875
No 456
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.36 E-value=1.3e+02 Score=22.18 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=12.9
Q ss_pred hcCCHHHHHHHHHHHHhc
Q psy4385 364 DLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 364 ~lg~~~~A~~~~~~al~l 381 (473)
..|+|++|+..|..|++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 567777777777777664
No 457
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=43.00 E-value=61 Score=19.12 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHh
Q psy4385 354 AFFRRGNAYLDL----NEPELAEKDFQKVLQ 380 (473)
Q Consensus 354 a~~~~g~a~~~l----g~~~~A~~~~~~al~ 380 (473)
+.+++|.+|..- .++..|...|++|.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 444455444321 245555555555543
No 458
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=42.08 E-value=65 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385 357 RRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV 389 (473)
Q Consensus 357 ~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~ 389 (473)
.+|..+...|++++|...|-+|+.+.|+-.+..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 456777777777777777777777777654443
No 459
>KOG4563|consensus
Probab=41.95 E-value=55 Score=32.01 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=47.0
Q ss_pred HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q psy4385 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAK 338 (473)
Q Consensus 265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 338 (473)
.-..+..+...|+.++..++|..|...|..|..++..... .-......+++..|..+++++++..++
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~G-------e~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYG-------EKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888999999999999999999999977654322 112334455666677777666555443
No 460
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=41.82 E-value=85 Score=29.17 Aligned_cols=55 Identities=16% Similarity=0.064 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHhh
Q psy4385 285 FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK-LKQAKPAKDQCDKAIE 346 (473)
Q Consensus 285 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 346 (473)
-+.|...|+.|+.+....-+ ..+|....+.+|.+..|+. +++.++|+....+|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~-------pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELP-------PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCC-------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788899999876443111 3367777888888888776 5888888887766653
No 461
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=41.35 E-value=56 Score=19.77 Aligned_cols=13 Identities=31% Similarity=0.143 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHh
Q psy4385 368 PELAEKDFQKVLQ 380 (473)
Q Consensus 368 ~~~A~~~~~~al~ 380 (473)
+++|...|++|.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 5666666666654
No 462
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=41.08 E-value=41 Score=18.99 Aligned_cols=24 Identities=17% Similarity=0.009 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHh
Q psy4385 322 LNAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 322 ~nla~~~~kl~~~~~A~~~~~~al 345 (473)
+.+=.+|.+.+++++|.+.+++..
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 344444555555555555555443
No 463
>KOG1914|consensus
Probab=40.13 E-value=2.1e+02 Score=29.85 Aligned_cols=75 Identities=11% Similarity=0.160 Sum_probs=58.4
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4385 342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFA 418 (473)
Q Consensus 342 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~ 418 (473)
++-++.+|.++.+|+.+-.-+... -++++...|++.+..-|..+.++....+...+-+.++.-++ .|.+++.+..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEk-LF~RCLvkvL 84 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEK-LFSRCLVKVL 84 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHh
Confidence 677899999999999988766655 99999999999999999999988776666555555554443 5666665543
No 464
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=39.01 E-value=3.8e+02 Score=27.56 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399 (473)
Q Consensus 337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 399 (473)
-+++..+.|-.|..|..++-..+.--+.+.+|..|+.++++.-+.+.-...+-.++..|...+
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (831)
T PRK15180 761 HLDYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCITAL 823 (831)
T ss_pred hHhhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Confidence 456677788889999999888888888999999999999999888744444556666665544
No 465
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.77 E-value=3.9e+02 Score=28.31 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy4385 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376 (473)
Q Consensus 317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~ 376 (473)
.+...+..|..+-..++.++|-.+|++.+..+|+ .+++-.++-+.+.|-...|...++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 41 TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 4556667777788889999999999999999988 678888999999999888888877
No 466
>KOG3677|consensus
Probab=38.05 E-value=57 Score=32.52 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=37.1
Q ss_pred HHHHHcCChhHHHHHHHHHhhhCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 326 MCLLKLKQAKPAKDQCDKAIELEPNNE-------KAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 326 ~~~~kl~~~~~A~~~~~~al~~~p~~~-------ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
..|.-+|++. | ..+.+.++|..+ ..-|..|.||+.+++|.+|++.|..+|-
T Consensus 243 R~H~lLgDhQ-a---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 243 RMHILLGDHQ-A---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHhhhhH-h---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688844 4 555677776543 2238899999999999999999887764
No 467
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=36.87 E-value=3.6e+02 Score=26.80 Aligned_cols=100 Identities=13% Similarity=-0.005 Sum_probs=63.8
Q ss_pred hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHH----HHHHHHHHHHHcCChhHHHHHHHHHhhh------
Q psy4385 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA----CHLNAAMCLLKLKQAKPAKDQCDKAIEL------ 347 (473)
Q Consensus 278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~nla~~~~kl~~~~~A~~~~~~al~~------ 347 (473)
...++....++-+...++...+-.+..+. +.|..-. +-+-+-..|+++++++.+..... |.+.
T Consensus 139 s~~~~d~l~~~sr~l~R~Fn~il~dR~p~------ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lk-a~~~vs~~Di 211 (413)
T COG5600 139 SELNQDNLSKISRLLTRMFNSILNDRSPA------LNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLK-ASKEVSMPDI 211 (413)
T ss_pred chhhHhhHHHHHHHHHHHHHHhcCCcCcc------CChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHH-hccccccccc
Confidence 33444555666666666665554433321 1122112 22345567889999887765443 3322
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385 348 ----EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384 (473)
Q Consensus 348 ----~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~ 384 (473)
-.+-+-..|.+|.+|+...++.+|-..+..|+...|.
T Consensus 212 ~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 212 SEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred chhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 1123356789999999999999999999999999987
No 468
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.81 E-value=2.3e+02 Score=27.10 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
...-+...+-..+...+++.++|.+|+...+.++.. .++-+..+..-..+|....+...+...+..|-.+
T Consensus 119 kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 119 KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 334456667788899999999999999999888743 2455677777888888888888888777666443
No 469
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=35.77 E-value=2e+02 Score=31.76 Aligned_cols=98 Identities=10% Similarity=-0.027 Sum_probs=70.7
Q ss_pred HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC-
Q psy4385 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE- 348 (473)
Q Consensus 270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~- 348 (473)
...--.|.....+++++.|.+.-+.++..++.. ..-....+++++|.++.-.|+|.+|..+...+.++.
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~----------~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEA----------AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc----------cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 333345667788999999999999999877652 233457789999999999999999999999988773
Q ss_pred ---CCC--HHHHHHHHHHHHhcCC--HHHHHHHHHH
Q psy4385 349 ---PNN--EKAFFRRGNAYLDLNE--PELAEKDFQK 377 (473)
Q Consensus 349 ---p~~--~ka~~~~g~a~~~lg~--~~~A~~~~~~ 377 (473)
.-. .-+.+-.+.++...|+ +++....|..
T Consensus 529 ~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 529 QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222 2344566788888883 4444444433
No 470
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=35.51 E-value=49 Score=28.36 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=20.1
Q ss_pred cchhHHHHhccCCCCcEEEEEec
Q psy4385 85 VIKAWDRGIATMKKDEVAVFTCK 107 (473)
Q Consensus 85 ~~~g~~~~l~~m~~Ge~~~v~i~ 107 (473)
+..-+-.+|.|.++|+.+.|.+|
T Consensus 122 ~~SPlG~aLlGk~~Gd~v~~~~p 144 (157)
T PRK00226 122 IESPIARALIGKKVGDTVEVTTP 144 (157)
T ss_pred cCChHHHHHhCCCCCCEEEEEcC
Confidence 45668899999999999999876
No 471
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=35.10 E-value=92 Score=17.92 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
.|..+-.++.+.|+++.|...++.-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355556666777777777777665443
No 472
>KOG0276|consensus
Probab=33.46 E-value=1.7e+02 Score=30.89 Aligned_cols=21 Identities=14% Similarity=-0.015 Sum_probs=14.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q psy4385 360 NAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 360 ~a~~~lg~~~~A~~~~~~al~ 380 (473)
.||..+|+++++++.+..--+
T Consensus 729 ~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHHcCCHHHHHHHHHhcCc
Confidence 467778888888777665533
No 473
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=32.80 E-value=61 Score=22.78 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=18.2
Q ss_pred cHHHHHHHHhcccCcEEEEEecCC
Q psy4385 200 PENLEKALEKFKYKEKSRLFVQPQ 223 (473)
Q Consensus 200 ~~gle~al~~m~~gE~~~~~i~~~ 223 (473)
-+.+..|+..|+.||++.+.+.++
T Consensus 34 D~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 34 DAELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp -HHHHHHHTT-BTT-EEEEEETTS
T ss_pred CHHHHHHHHHhhcCceeEEEEecC
Confidence 457889999999999999998654
No 474
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=32.78 E-value=90 Score=17.82 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=12.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHh
Q psy4385 323 NAAMCLLKLKQAKPAKDQCDKAI 345 (473)
Q Consensus 323 nla~~~~kl~~~~~A~~~~~~al 345 (473)
.+=.+|.+.+++++|.+.+.+..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444555666666666555543
No 475
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=32.64 E-value=2e+02 Score=21.11 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=7.9
Q ss_pred hHHHHHHHHHhhhC
Q psy4385 335 KPAKDQCDKAIELE 348 (473)
Q Consensus 335 ~~A~~~~~~al~~~ 348 (473)
.+|+....+|++.|
T Consensus 4 ~~Ai~lv~~Av~~D 17 (75)
T cd02684 4 EKAIALVVQAVKKD 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666665554
No 476
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=32.22 E-value=1.1e+02 Score=24.30 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=29.8
Q ss_pred hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhh
Q psy4385 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPY 298 (473)
Q Consensus 263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~ 298 (473)
.-+.+.+......|...+-.|+|..|.+...++-+.
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 335566777888999999999999999999999744
No 477
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=32.07 E-value=3.9e+02 Score=24.26 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHc-CChhHHHHHHHH-Hh-hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385 320 CHLNAAMCLLKL-KQAKPAKDQCDK-AI-ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396 (473)
Q Consensus 320 ~~~nla~~~~kl-~~~~~A~~~~~~-al-~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 396 (473)
+..+-|..|... ..|-.++..... +| .-||....++.++|.+...+-.+-.-+.+=-..+-..|-+.-+...|..++
T Consensus 27 ~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK 106 (215)
T cd07642 27 AIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDLKGVK 106 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhH
Confidence 344444444432 246666666655 33 345566688889998888887765544332222333455555666777776
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy4385 397 QKLREQKIKEKQVYANMFDK 416 (473)
Q Consensus 397 ~~~~~~~~~~k~~~~~~f~~ 416 (473)
..+++.-++..+.|..++.+
T Consensus 107 ~d~KK~fdK~~~dyE~~~~k 126 (215)
T cd07642 107 GDLKKPFDKAWKDYETKVTK 126 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666556666677766644
No 478
>KOG0890|consensus
Probab=31.86 E-value=2.4e+02 Score=34.89 Aligned_cols=64 Identities=13% Similarity=-0.010 Sum_probs=36.0
Q ss_pred HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
..++.+.+.+....+.|+++.|....-.|.... .+.++.-+|..+.+.|+-..|+...++.+.
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-----------------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR-----------------LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-----------------cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 334445555555555666666655555554211 344566666666666666666666666664
Q ss_pred h
Q psy4385 347 L 347 (473)
Q Consensus 347 ~ 347 (473)
+
T Consensus 1731 ~ 1731 (2382)
T KOG0890|consen 1731 K 1731 (2382)
T ss_pred h
Confidence 4
No 479
>KOG4014|consensus
Probab=31.82 E-value=2.3e+02 Score=25.13 Aligned_cols=31 Identities=16% Similarity=0.063 Sum_probs=19.9
Q ss_pred hhHHHHhhcchhhh-----ccc--HHHHHHHHHHHhhh
Q psy4385 268 QGKLLKERGTTYFK-----QDK--FELACRNYKKAIPY 298 (473)
Q Consensus 268 ~a~~~~~~G~~~~~-----~~~--~~~A~~~y~~al~~ 298 (473)
...+....|..+.. ..+ ..+|.++|.+|..+
T Consensus 104 ~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 104 IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 34455666665543 223 67899999999854
No 480
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=31.78 E-value=2e+02 Score=21.17 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=8.2
Q ss_pred hHHHHHHHHHhhhC
Q psy4385 335 KPAKDQCDKAIELE 348 (473)
Q Consensus 335 ~~A~~~~~~al~~~ 348 (473)
.+|+..+.+|++.|
T Consensus 4 ~~A~~l~~~Ave~d 17 (75)
T cd02677 4 EQAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666554
No 481
>KOG0985|consensus
Probab=31.55 E-value=5.9e+02 Score=29.12 Aligned_cols=58 Identities=16% Similarity=-0.001 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
+..|..+|.+.+..+...+|++.|-+| +++..|...-.+..+.|.|++-++++..|-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 446666666666666666666666332 3455555555556666666666666655533
No 482
>KOG2758|consensus
Probab=31.52 E-value=2.1e+02 Score=27.68 Aligned_cols=69 Identities=10% Similarity=-0.063 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH--hhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 313 RKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA--IEL--EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 313 ~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a--l~~--~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
..+.....++..|...+.-|+|..|-.+.-.- +-- ++++..|++..-.+-.-+.+|+-|++++.+.-+.
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34566778888888888999998887765433 322 3445666666655666678888898888776553
No 483
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=31.27 E-value=2.5e+02 Score=27.73 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=40.3
Q ss_pred ChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy4385 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK 377 (473)
Q Consensus 333 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~ 377 (473)
..-+|+-..+.++..+|.|......+...|..+|-...|...|..
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 456788888999999999999999999999999999999887753
No 484
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.26 E-value=1.2e+02 Score=26.83 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhh
Q psy4385 361 AYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ-VYANMFDKF 417 (473)
Q Consensus 361 a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~-~~~~~f~~~ 417 (473)
++.+.|.|++|.+.|++... +|++...+..|..+-.....+..--.. .|..|.+++
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnFSy~~~~~ki 176 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNFSYSHFMQKM 176 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhccHHHHHHHH
No 485
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.96 E-value=50 Score=33.57 Aligned_cols=122 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHhcccCc-----EEEEEecCCCCCCCCCCCCCC-CCCCCCceeeeeeccccccccccccCchhHHHhhHHHHhhcc
Q psy4385 204 EKALEKFKYKE-----KSRLFVQPQHLWSGKGNDKLG-VPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGT 277 (473)
Q Consensus 204 e~al~~m~~gE-----~~~~~i~~~~~~~~~g~~~~~-ip~~~~~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 277 (473)
++.|+.+..|= ...+.+||.++-........+ +..|+..+|...|.-|+-.+....--+.+.
T Consensus 373 DQTLrL~NqG~T~~eI~~~~~lPpaL~~~W~~rGYyGSvshNarAVy~rYlG~yD~NPa~L~P~~p~d------------ 440 (655)
T COG2015 373 DQTLRLANQGYTGNEIADMIQLPPALAREWYTRGYYGSVSHNARAVYNRYLGYYDGNPANLHPLPPVD------------ 440 (655)
T ss_pred HHHHHHHhcCccHHHHHHHhcCChHHHHhHhhcCccccccccHHHHHHHHhccccCCccccCCCChhH------------
Q ss_pred hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHH
Q psy4385 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFR 357 (473)
Q Consensus 278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~ 357 (473)
..++|-+|.-=-.+.+ ++|.-.+..|+|.=|.+..++++--+|.|..|..-
T Consensus 441 ---~a~ryV~amGGadrVl--------------------------~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L 491 (655)
T COG2015 441 ---SAKRYVEAMGGADRVL--------------------------ELAREAFDKGDYRWAAELLNQAVFADPGNKAAREL 491 (655)
T ss_pred ---hHHHHHHHhccHHHHH--------------------------HHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHH
Q ss_pred HHHHHHhcC
Q psy4385 358 RGNAYLDLN 366 (473)
Q Consensus 358 ~g~a~~~lg 366 (473)
.+.++.++|
T Consensus 492 ~Ad~lEQLg 500 (655)
T COG2015 492 QADALEQLG 500 (655)
T ss_pred HHhHHHHhh
No 486
>KOG2709|consensus
Probab=30.43 E-value=80 Score=31.49 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
+..++|.||-.+++++.|+.+|+++|.+
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 6678999999999999999999998865
No 487
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=29.59 E-value=4.8e+02 Score=25.82 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=24.6
Q ss_pred hHHHhhHHHHhhcchhhhcc---------cHHHHHHHHHHHhhhhc
Q psy4385 264 EKLEQGKLLKERGTTYFKQD---------KFELACRNYKKAIPYLD 300 (473)
Q Consensus 264 ~~~~~a~~~~~~G~~~~~~~---------~~~~A~~~y~~al~~~~ 300 (473)
...+.+..+++.|..+.+.+ ....|..+|+.|.-++.
T Consensus 109 l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~ 154 (361)
T cd09239 109 IKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFA 154 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence 44566777777777664333 36778888888876554
No 488
>PHA02122 hypothetical protein
Probab=29.44 E-value=89 Score=21.32 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=16.5
Q ss_pred CCCCEEEEEEEEEecCCCEEe
Q psy4385 47 SAGCKVKVHYTGTLLDGTVFD 67 (473)
Q Consensus 47 ~~gd~V~v~y~~~~~dg~~~~ 67 (473)
..||.|.++|.... +|+.|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 35899999999998 787764
No 489
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=28.87 E-value=2.5e+02 Score=21.04 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385 366 NEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR 400 (473)
Q Consensus 366 g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 400 (473)
+....++.....+++.+|+|+.++..+........
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn 55 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYN 55 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 44556666666777888888887766665554443
No 490
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.07 E-value=3.6e+02 Score=25.26 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=48.9
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChh-HHHHHHHHHhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK-PAKDQCDKAIE 346 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~-~A~~~~~~al~ 346 (473)
..+.++.-+..+++.+++..|...-.-.++.+.......+ ....-++..++..+..-+ .-....++|++
T Consensus 9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~----------~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~ 78 (260)
T PF04190_consen 9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD----------EESIARLIELISLFPPEEPERKKFIKAAIK 78 (260)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S----------HHHHHHHHHHHHHS-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 3455666667778888888887776555554443211111 111223444443333211 12222233322
Q ss_pred ------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy4385 347 ------LEPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376 (473)
Q Consensus 347 ------~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~ 376 (473)
..-.++..+...|..|.+-++|.+|...|-
T Consensus 79 WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 79 WSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 122356777788888888888888876663
No 491
>KOG0276|consensus
Probab=27.61 E-value=2.2e+02 Score=30.15 Aligned_cols=50 Identities=30% Similarity=0.316 Sum_probs=38.9
Q ss_pred HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381 (473)
Q Consensus 327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l 381 (473)
+.+++|+++.|.+. ..+.++..-|-.+|.+.+..+++..|.++|.+|..+
T Consensus 646 lal~lgrl~iA~~l-----a~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDL-----AVEANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHH-----HHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34677888877663 334566777888999999999999999999988655
No 492
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=27.55 E-value=6.4e+02 Score=26.32 Aligned_cols=55 Identities=18% Similarity=0.045 Sum_probs=44.7
Q ss_pred cCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHhcCCCC
Q psy4385 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLD--------------------LNEPELAEKDFQKVLQIDPNN 385 (473)
Q Consensus 331 l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~--------------------lg~~~~A~~~~~~al~l~P~~ 385 (473)
..+|.+|++.....|++|..+..|.-++-.-+.. -.+|-+|+.+|++.+.++..|
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 5689999999999999999998887666555544 456889999999999887654
No 493
>KOG1811|consensus
Probab=26.28 E-value=3.2e+02 Score=28.89 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=41.1
Q ss_pred HHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385 329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385 (473)
Q Consensus 329 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~ 385 (473)
+....|..|+..|.+. . -+...+|...|.++++.++|..|..-|++++++-.++
T Consensus 567 ie~ErYqlaV~mckKc-~--iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkged 620 (1141)
T KOG1811|consen 567 IEAERYQLAVEMCKKC-G--IDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGED 620 (1141)
T ss_pred HHHHHHHHHHHHHhhc-C--CCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCc
Confidence 3345566666666554 1 2355789999999999999999999999999986443
No 494
>KOG4056|consensus
Probab=26.09 E-value=1.5e+02 Score=24.74 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385 357 RRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393 (473)
Q Consensus 357 ~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 393 (473)
.+|..|+..|+++++...|-.|+.+.|.-.+....|.
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vlq 122 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVLQ 122 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4788899999999999999999999988666554443
No 495
>KOG0890|consensus
Probab=25.69 E-value=3.7e+02 Score=33.43 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385 312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382 (473)
Q Consensus 312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~ 382 (473)
.++.....+|++.|....+.|+++.|-.+.-.|.+.. -+.++.-+|+.+-..|+-..|+..++..+.++
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4456678899999999999999999999998888887 57889999999999999999999999999765
No 496
>PRK11619 lytic murein transglycosylase; Provisional
Probab=25.66 E-value=4.4e+02 Score=28.48 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=42.9
Q ss_pred HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
..+..++++.+...+...-..........|.+|.++..+|+-++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 445788888887777775443445678999999999999999999999998754
No 497
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.63 E-value=6.5e+02 Score=24.76 Aligned_cols=148 Identities=9% Similarity=0.003 Sum_probs=0.0
Q ss_pred hhcchhhhcccHHHHHHHHHHHhhhhcCCCC------------------CChhHHHHHHHHHHHHHHHHHHHHHHcCChh
Q psy4385 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGG------------------FEGEQETERKKTLTACHLNAAMCLLKLKQAK 335 (473)
Q Consensus 274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~------------------~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~ 335 (473)
+.|..++..++|.+....+..|-.-.....+ .+-.+-....-...-+++.+|.-|+..++++
T Consensus 63 ~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~ 142 (449)
T COG3014 63 QNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDSA 142 (449)
T ss_pred hhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcchh
Q ss_pred HHHHHHHHHh------------------------hhCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385 336 PAKDQCDKAI------------------------ELEPNNE-----------KAFFRRGNAYLDLNEPELAEKDFQKVLQ 380 (473)
Q Consensus 336 ~A~~~~~~al------------------------~~~p~~~-----------ka~~~~g~a~~~lg~~~~A~~~~~~al~ 380 (473)
.|.--+++|. .++|+-- ..|.++..-|-.-.++-.+-.+|.++|-
T Consensus 143 ~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~lf 222 (449)
T COG3014 143 KARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGLF 222 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHh
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy4385 381 IDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTE 423 (473)
Q Consensus 381 l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~ 423 (473)
..|++ +....+..+.+...-+.+ ++..++...........+
T Consensus 223 ~a~n~-dv~kg~~~~~e~~gi~qd-~~~~~~qY~~~~k~~~A~ 263 (449)
T COG3014 223 YALNG-DVNKGLGYLNEAYGISQD-QSPFVAQYLVFFKNPNAS 263 (449)
T ss_pred cccCc-cHhHHHHHHHHHhccCch-hhHHHHHhcceeccCCcc
No 498
>PF13041 PPR_2: PPR repeat family
Probab=25.48 E-value=2e+02 Score=18.67 Aligned_cols=28 Identities=7% Similarity=-0.175 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385 320 CHLNAAMCLLKLKQAKPAKDQCDKAIEL 347 (473)
Q Consensus 320 ~~~nla~~~~kl~~~~~A~~~~~~al~~ 347 (473)
.|+-+=.++.+.|++++|.+.+++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444444555555555555555555543
No 499
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=25.26 E-value=1.7e+02 Score=25.08 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=20.4
Q ss_pred cchhHHHHhccCCCCcEEEEEecC
Q psy4385 85 VIKAWDRGIATMKKDEVAVFTCKP 108 (473)
Q Consensus 85 ~~~g~~~~l~~m~~Ge~~~v~i~~ 108 (473)
...-+-.||.|.++||.+.+.+|.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCC
Confidence 455688999999999999998763
No 500
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=25.19 E-value=2.7e+02 Score=23.76 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=47.5
Q ss_pred hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE 346 (473)
Q Consensus 268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 346 (473)
.........+.+++.|+...|....+.+-.-+..... .+--.......+.|..++..|+|.+|......|+.
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~-------~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTA-------LLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEE-------EEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeee-------eCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3556777889999999999999988776532211000 00011234556889999999999999998888763
Done!