RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4385
(473 letters)
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 410 bits (1054), Expect = e-140
Identities = 184/441 (41%), Positives = 271/441 (61%), Gaps = 7/441 (1%)
Query: 20 ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
+ + I D GVLK +K G G+ TP G KV VHY G L +G FDSS R EPF F
Sbjct: 21 QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFS 80
Query: 80 LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
LGKGQVIKAWD G+ATMK+ E+ CKPEYAYG GS P IP ++TL FE+E++ ++ E
Sbjct: 81 LGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 140
Query: 140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
D+ GI R +G +S P +GA VEI L+G C G++F +F +GEG ++DI
Sbjct: 141 DLFEDG--GIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGEDHDI 198
Query: 200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
P ++KALEK + +E+ L++ P++ + G K G+ N Y +T+ +FEK K++W+
Sbjct: 199 PIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWE 258
Query: 260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
+++ EKLEQ ++KE+GT YFK K+ A Y K + +L+ + G ++ + L A
Sbjct: 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318
Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
LN AMC LKL++ A + CDKA+ L+ NEK +RRG A L +NE E A+ DF+KVL
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
Query: 380 QIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTL 439
+++P NKAA +++ ++K +E +++++YANMF KFA+ D ++E + K
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMG-----KKT 433
Query: 440 GEWGAEERGRESTNFEKENPN 460
E E+G +S E+E P
Sbjct: 434 SEGVTNEKGTDSQAMEEEKPE 454
Score = 102 bits (256), Expect = 6e-24
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 15 RIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGE 74
I +++ K DL +DGG+++ K G G + P+ G V++H G G +FD
Sbjct: 131 EIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGR-CGGRMFDC-----R 184
Query: 75 PFEFDLGKGQ---VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFE 130
F +G+G+ + D+ + M+++E + P Y +G+ G P I P++ L++E
Sbjct: 185 DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYE 244
Query: 131 VEMISWEAEDISPTHD 146
V + S+E S D
Sbjct: 245 VTLKSFEKAKESWEMD 260
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 274 bits (703), Expect = 3e-89
Identities = 119/321 (37%), Positives = 189/321 (58%), Gaps = 2/321 (0%)
Query: 137 EAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSE 196
+ DGGI R I G ++ P +GA VE+ L+G + K+F + F +GEG
Sbjct: 17 RGSHMEE--DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGEN 74
Query: 197 YDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKD 256
D+P LE+A+++ + E S ++++P + + G +K +P N Y + + +FEK K+
Sbjct: 75 LDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 134
Query: 257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKT 316
+W++NS+EKLEQ ++KERGT YFK+ K++ A YKK + +L+++ F E+ + +
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376
A HLN AMC LKL+ A + C+KA+EL+ NNEK RRG A+L +N+ ELA DFQ
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254
Query: 377 KVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVM 436
KVLQ+ PNNKAA +L +Q++R Q +EK++YANMF++ A+ + + + E +
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTD 314
Query: 437 KTLGEWGAEERGRESTNFEKE 457
+ E + E E
Sbjct: 315 TEMKEEQKSNTAGSQSQVETE 335
Score = 110 bits (277), Expect = 3e-27
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 10/126 (7%)
Query: 19 VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
+ + + +DGG+++ I+T G G P+ G V+V G D +FD F
Sbjct: 14 LVPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK-LFDQ-----RELRF 67
Query: 79 DLGKGQ---VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPT-IPPDSTLVFEVEMI 134
++G+G+ + +R I M+K E ++ KP YA+G G IPP++ L +E+ +
Sbjct: 68 EIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLK 127
Query: 135 SWEAED 140
S+E
Sbjct: 128 SFEKAK 133
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 261 bits (668), Expect = 1e-84
Identities = 112/240 (46%), Positives = 151/240 (62%)
Query: 20 ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
E I D GVLK IK G G P G +V VHYTG LLDGT FDSS R + F FD
Sbjct: 41 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 100
Query: 80 LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
LGKG+VIKAWD IATMK EV TCKPEYAYG GSPP IPP++TLVFEVE+ ++ E
Sbjct: 101 LGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGE 160
Query: 140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
D++ DGGI R I G ++ P +GA VE+ L+G + K+F + F +GEG D+
Sbjct: 161 DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDL 220
Query: 200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
P LE+A+++ + E S ++++P + + G +K +P N Y + + +FEK K++W+
Sbjct: 221 PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWE 280
Score = 49.1 bits (117), Expect = 1e-06
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 20/127 (15%)
Query: 114 KQGSPPTIPPDSTLVFEVEMISWEAE-----------DISPTHDGGIRREILEEGASFST 162
+ P + + EM + E+ DISP D G+ + I EG
Sbjct: 7 HHHHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEM 66
Query: 163 PKDGANVEITLKGE-CEGKVF-----QEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKS 216
P G V + G +G F ++ FSF LG+G + + + A+ K E
Sbjct: 67 PMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGE---VIKAWDIAIATMKVGEVC 123
Query: 217 RLFVQPQ 223
+ +P+
Sbjct: 124 HITCKPE 130
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 229 bits (586), Expect = 2e-71
Identities = 96/245 (39%), Positives = 135/245 (55%), Gaps = 10/245 (4%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
G+ K++ G G TP G +V+VHYTGTLLDG FDSS+ R + F+F LG+GQVI
Sbjct: 8 IGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVI 67
Query: 87 KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHD 146
K WD+GI TMKK E A+FT PE AYG+ GSPPTIP ++TL F+VE++SW D
Sbjct: 68 KGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWT-SVRDIAKD 126
Query: 147 GGIRREILEEGASFSTPKDGANVEITLKGECE-GKVFQEG-TFSFVLGEGSEYDIPENLE 204
GGI ++IL+EG + PKD V + + E G V + F + +G + L
Sbjct: 127 GGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGH---LCPALA 183
Query: 205 KALEKFKYKEKSRLFVQPQHLWSGKGNDKLG----VPSNKPATYTITMNNFEKIKDTWQL 260
KA++ K EK L V+PQ+ + G G VP N + + +++ + +
Sbjct: 184 KAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDD 243
Query: 261 NSDEK 265
K
Sbjct: 244 KKILK 248
Score = 183 bits (466), Expect = 7e-54
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 21/236 (8%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
G+ K+I G P +V V Y L DGTV S E EF + G + A
Sbjct: 128 GIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALA 183
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPP-----TIPPDSTLVFEVEMISWEAEDISPTH 145
+ + TMKK E + KP+Y +G+ G P +PP+++LV ++E++SW+
Sbjct: 184 KAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWK-TVTEIGD 242
Query: 146 DGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVFQ------EGTFSFVLGEGSEYD 198
D I +++L+E + P +GA V + + G+ + G VF + F F E
Sbjct: 243 DKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEE---A 299
Query: 199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLG-VPSNKPATYTITMNNFEK 253
+ E L++A+ K E + + + P++ + + + VP N Y + + +F K
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK 355
Score = 155 bits (393), Expect = 3e-43
Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVF-DSSKTRGEPFEFDLGKGQV 85
DD +LK++ G P+ G V V TG L DGTVF EPFEF + V
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAV 300
Query: 86 IKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP--TIPPDSTLVFEVEMISWEAE 139
I+ DR + MKK EVA+ T PEYAYG S +PP+ST+++EVE++S+ +
Sbjct: 301 IEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 356
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 227 bits (579), Expect = 8e-71
Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 29/342 (8%)
Query: 97 KKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEE 156
E + T + + +PP EV D + ++I++E
Sbjct: 12 HDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL-------------DEKVSKQIIKE 58
Query: 157 GASFSTPKDGANVEITLKGECEG-------KVFQEGTFSFVLGEGSEYDIPENLEKALEK 209
G S P + + + + ++ VLG+ E L +
Sbjct: 59 GHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGK--EKKELAGLAIGVAS 115
Query: 210 FKYKEKSRLFVQPQHLWSGKGNDKL-GVPSNKPATYTIT---MNNFEKIKDTWQLNSDEK 265
K E++ + V + + +GN VP Y + + ++ K + +E+
Sbjct: 116 MKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEER 175
Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE--GEQETERKKTLTACHLN 323
+ K G + FK++K E A + Y+ AI Y+ D F+ G+ + CHLN
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLN 235
Query: 324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383
A CL+KLK+ A C+ + E N KA FRRG A +L + + A DF+K + P
Sbjct: 236 IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295
Query: 384 NNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKE 425
++KA ++L ++ + K+K++Y +F + + +
Sbjct: 296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 214 bits (546), Expect = 2e-68
Identities = 77/135 (57%), Positives = 92/135 (68%), Gaps = 2/135 (1%)
Query: 19 VESKAIDLTD--DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPF 76
+ + ID+T DGGVLK IK G G P+ G VKVHY GTL +GT FDSS+ RG+ F
Sbjct: 1 MSGEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQF 60
Query: 77 EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
F+LG+G VIK WD G+ATM K EVA FT + +Y YG GSPP IP +TL+FEVE+ W
Sbjct: 61 SFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW 120
Query: 137 EAEDISPTHDGGIRR 151
AEDISP DG I R
Sbjct: 121 SAEDISPDRDGTILR 135
Score = 43.4 bits (103), Expect = 2e-05
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 134 ISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVF----QEGT-F 187
+S E DI+P DGG+ + I +EG P G V++ G E G F G F
Sbjct: 1 MSGEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQF 60
Query: 188 SFVLGEG 194
SF LG G
Sbjct: 61 SFNLGRG 67
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 199 bits (507), Expect = 8e-63
Identities = 66/120 (55%), Positives = 80/120 (66%)
Query: 20 ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
+ + I D GVLK +K G G+ TP G KV VHY G L +G FDSS R EPF F
Sbjct: 9 QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFS 68
Query: 80 LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
LGKGQVIKAWD G+ATMKK E+ CKPEYAYG GS P IP ++TL FE+E++ ++ E
Sbjct: 69 LGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 128
Score = 39.2 bits (92), Expect = 5e-04
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 133 MISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVF----QEGT- 186
++ + EDI+ D G+ + + G TP G V + KG+ GK F
Sbjct: 5 TVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEP 64
Query: 187 FSFVLGEG 194
F F LG+G
Sbjct: 65 FVFSLGKG 72
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 194 bits (494), Expect = 1e-60
Identities = 66/120 (55%), Positives = 80/120 (66%)
Query: 20 ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
+ + I D GVLK +K G G+ TP G KV VHY G L +G FDSS R EPF F
Sbjct: 25 QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFS 84
Query: 80 LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
LGKGQVIKAWD G+ATMKK E+ CKPEYAYG GS P IP ++TL FE+E++ ++ E
Sbjct: 85 LGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 144
Score = 36.2 bits (84), Expect = 0.007
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 137 EAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVF----QEGT-FSFV 190
+ EDI+ D G+ + + G TP G V + KG+ GK F F F
Sbjct: 25 QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFS 84
Query: 191 LGEG 194
LG+G
Sbjct: 85 LGKG 88
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 189 bits (483), Expect = 2e-59
Identities = 53/110 (48%), Positives = 67/110 (60%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
+G V + +PG G T P G V +HYTGTL +G FDSS RG PF+ ++G GQVI
Sbjct: 3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVI 62
Query: 87 KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
K WD GI + E A T YAYG +G P IPP+STLVF+VE++
Sbjct: 63 KGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112
Score = 33.3 bits (77), Expect = 0.039
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 142 SPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVF----QEGT-FSFVLGEG 194
S +G ++ + + G + PK G V I G E G+ F G+ F +G G
Sbjct: 1 SEVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVG 59
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 188 bits (481), Expect = 3e-59
Identities = 53/107 (49%), Positives = 67/107 (62%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
GV E +PG G T P G VHYTG L DG FDSS+ R +PF+F LGK +VI+ W+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
G+A M + A T P+YAYG G P IPP +TLVF+VE++ E
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 29.4 bits (67), Expect = 0.67
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 148 GIRREILEEGASFSTPKDGANVEITLKGECE-GKVF----QEGT-FSFVLGEG 194
G++ E + G + PK G + G E GK F F F+LG+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQ 53
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5;
2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A*
3ni6_A 3pa7_A
Length = 129
Score = 189 bits (481), Expect = 6e-59
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 20 ESKAIDLTDDGGVLKEIKTPGVGD--TTPSAGCKVKVHYTGTLLD-GTVFDSSKTRGEPF 76
E + ++LT DGGV+K I G P G +V VHY G L G VFDSS R PF
Sbjct: 6 EFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPF 65
Query: 77 EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
+F L +G+VIK WD +++M+K+E + + Y YG +G +IP +S L+FE+E++S+
Sbjct: 66 KFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
Query: 137 EAED 140
+
Sbjct: 126 RELE 129
Score = 37.3 bits (87), Expect = 0.002
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 137 EAEDISPTHDGGIRREILEEG--ASFSTPKDGANVEITLKG--ECEGKVF----QEGT-F 187
E E + T DGG+ + IL++G + PK G V + G E GKVF F
Sbjct: 6 EFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPF 65
Query: 188 SFVLGEG 194
F L +G
Sbjct: 66 KFHLEQG 72
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 186 bits (475), Expect = 5e-58
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 20 ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLD-GTVFDSSKTRGEPFEF 78
+ +D++ D GVLK++ G GD + V V Y+G L FDS+ R P
Sbjct: 16 SQRMLDISGDRGVLKDVIREGAGDL-VAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLM 74
Query: 79 DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
LG+ + + G+ +M++ E+A F KP YAYG G PP IPP++T++FE+E++ +
Sbjct: 75 KLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 132
Score = 35.7 bits (83), Expect = 0.009
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 132 EMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKG--ECEGKVF----QEG 185
E +S DI + D G+ ++++ EG + A+V + G E + F
Sbjct: 13 ERLSQRMLDI--SGDRGVLKDVIREG-AGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRK 69
Query: 186 T-FSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQ 223
T LGE + +E L + E +R +P
Sbjct: 70 TPRLMKLGEDIT--LW-GMELGLLSMRRGELARFLFKPN 105
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura
genomics, seattle structural genomics center for
infectious; NMR {Giardia lamblia}
Length = 130
Score = 185 bits (473), Expect = 1e-57
Identities = 58/109 (53%), Positives = 77/109 (70%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
+ + K++ TPG G T P AG KV VHY G DG FDSS++RG+PF+F LG G+VI
Sbjct: 21 SMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVI 80
Query: 87 KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
K WD+G+ATM E A+FT + AYG++G PP IPP +TLVFEVE+++
Sbjct: 81 KGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129
Score = 29.5 bits (67), Expect = 0.92
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 12/60 (20%)
Query: 144 THDGGIRREILEEGASFSTPKDGANVEI----TLKGECEGKVF----QEGT-FSFVLGEG 194
+ + +++L G + P+ G V + +GK F G F F LG G
Sbjct: 21 SMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFP---DGKQFDSSRSRGKPFQFTLGAG 77
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 186 bits (474), Expect = 6e-57
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 2/178 (1%)
Query: 250 NFEKI-KDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGE 308
F+ K + +EK++ +KE G +FK+++ A YK+A+ + ++ +
Sbjct: 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77
Query: 309 QETERKKTL-TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE 367
++KK + +C+LN A C K K A D K ++++ NN KA ++ G A +
Sbjct: 78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137
Query: 368 PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKE 425
E A+++ K ++PNN KL+E + K+K + MFDK ++ +K
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKN 195
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor,
SHH signalling antagonist, structural genomics
consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Length = 118
Score = 178 bits (455), Expect = 3e-55
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 24 IDLTDDGGVLKEIKTPG-VGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGK 82
+D+ +G + K+ PG G + P G V VH +L +GT F LG
Sbjct: 7 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGD 62
Query: 83 GQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
VI+A D + M E A+ T +Y YG QG P IPP + L EV + +
Sbjct: 63 CDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117
Score = 43.4 bits (103), Expect = 1e-05
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 137 EAEDISPTHDGGIRREILEEG-ASFSTPKDGANVEITLKGECE-GKVFQEGT-FSFVLGE 193
E DI +G +R++ L G S P G V + L+ E G QE F LG+
Sbjct: 5 EWLDI--LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGD 62
Query: 194 GSEYDIPENLEKALEKFKYKEKSRLFVQPQ 223
D+ + L+ ++ E + + +
Sbjct: 63 C---DVIQALDLSVPLMDVGETAMVTADSK 89
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus,
phosphoprotein, R isomerase-inhibitor complex; HET: RAP;
1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 176 bits (448), Expect = 3e-54
Identities = 47/117 (40%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 29 DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS-------KTRGEPFEFDLG 81
K I G P G V YTGTL DGTVFD++ K +P F +G
Sbjct: 3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62
Query: 82 KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSP-PTIPPDSTLVFEVEMISWE 137
G+VI+ WD + TM K E A +PE+AYGK+G P IPP++ L+FEVE++ +
Sbjct: 63 VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDID 119
Score = 28.8 bits (65), Expect = 1.4
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 13/62 (20%)
Query: 146 DGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVF------------QEGTFSFVLG 192
+ IL++G + PK G V G G VF SF +G
Sbjct: 3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62
Query: 193 EG 194
G
Sbjct: 63 VG 64
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 171 bits (436), Expect = 1e-52
Identities = 45/101 (44%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 40 GVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKD 99
G G + +HYTG L DGT FDSS + +PF F LG GQVIK WD+G+ M +
Sbjct: 1 GSPIK-SRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEG 59
Query: 100 EVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAED 140
E E YG++G+PP IP +TLVFEVE++ E
Sbjct: 60 EKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRT 100
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 171 bits (435), Expect = 5e-52
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 24 IDLTDDGGVLKEIKTPGVG-DTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGK 82
+D+ +G + K+ PG + P G V VH +L +GT F LG
Sbjct: 11 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGD 66
Query: 83 GQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS-PPTIPPDSTLVFEVEMISW-EAED 140
VI+A D + M E A+ T +Y YG QGS P IPP + L EV + + + D
Sbjct: 67 CDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPD 126
Query: 141 ISP 143
+
Sbjct: 127 LEM 129
Score = 48.1 bits (115), Expect = 5e-07
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 137 EAEDISPTHDGGIRREILEEG-ASFSTPKDGANVEITLKGECE-GKVFQEGT-FSFVLGE 193
E DI +G +R++ L G S P G V + L+ E G QE F LG+
Sbjct: 9 EWLDI--LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGD 66
Query: 194 GSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK 253
D+ + L+ ++ E + + ++ + +G+ +P + +T+
Sbjct: 67 C---DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVD 123
Query: 254 IKDTWQ 259
D
Sbjct: 124 RPDLEM 129
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 169 bits (430), Expect = 6e-51
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 4/158 (2%)
Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD---FDGGFEGEQETERKKTL 317
D+KL+ + L+++G F Q ++ A Y+ A+ LD + E +
Sbjct: 3 AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN 62
Query: 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK 377
+ N + C L + A++ + ++ E NEKA FRR A + + + AE+D +
Sbjct: 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122
Query: 378 VLQIDPNNKAAVQK-LTQTKQKLREQKIKEKQVYANMF 414
+L+ P + V + + ++ E+K + Y+ MF
Sbjct: 123 LLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 165 bits (420), Expect = 1e-49
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 20 ESKAIDLTDDGGVLKEIKTPGVG-DTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
+ +D+ +G + K+ PG + P G V VH +L +GT F
Sbjct: 33 PEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVF 88
Query: 79 DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS-PPTIPPDSTLVFEVEMISW- 136
LG VI+A D + M E A+ T +Y YG QGS P IPP + L EV + +
Sbjct: 89 TLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAV 148
Query: 137 EAEDISPTH 145
+ E H
Sbjct: 149 DLEHHHHHH 157
Score = 42.1 bits (99), Expect = 7e-05
Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 6/135 (4%)
Query: 130 EVEMISWEAEDISPTHDGGIRREILEEG-ASFSTPKDGANVEITLKGECE-GKVFQEGT- 186
E E + +G +R++ L G S P G V + L+ E G QE
Sbjct: 26 EPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPE 85
Query: 187 FSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTI 246
F LG+ D+ + L+ ++ E + + ++ + +G+ +P + +
Sbjct: 86 LVFTLGDC---DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEV 142
Query: 247 TMNNFEKIKDTWQLN 261
T+ ++ +
Sbjct: 143 TLKTAVDLEHHHHHH 157
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET:
SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A
2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Length = 133
Score = 163 bits (416), Expect = 3e-49
Identities = 53/109 (48%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
T + G+ E T G G AG V VHYTG L DG FDSSK R +PF F LG G VI
Sbjct: 25 TTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVI 83
Query: 87 KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
K WD G+ MK V T P+ YG +G+ IPP++TLVFEVE++
Sbjct: 84 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 164 bits (417), Expect = 7e-49
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGT-VFDSSKTRGEPFEFDLGK-GQ 84
D V K+I G G PS +HY + F+ + +P E LGK +
Sbjct: 46 VLDEKVSKQIIKEGHGSK-PSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKK 104
Query: 85 VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQG--SPPTIPPDSTLVFEVEMISWEAEDIS 142
+ G+A+MK E A+ E AYGK+G S P +PP + L++EVE+I ++
Sbjct: 105 ELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEG 164
Query: 143 PTHDGGIRREILEEG 157
E +
Sbjct: 165 KARSDMTVEERIGAA 179
Score = 36.8 bits (85), Expect = 0.007
Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 27/187 (14%)
Query: 94 ATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREI 153
E + T + + +PP EV D + ++I
Sbjct: 9 TQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL-------------DEKVSKQI 55
Query: 154 LEEGASFSTPKDGANVEITLKGECE--GKVF----QEGT-FSFVLGEGSEYDIPENLEKA 206
++EG S P + + + + F E VLG+ + + L
Sbjct: 56 IKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKE-LA-GLAIG 112
Query: 207 LEKFKYKEKSRLFVQPQHLWSGKGN-DKLGVPSNKPATYTITMNNFEKIKDT---WQLNS 262
+ K E++ + V + + +GN VP Y + + F++ K+ +
Sbjct: 113 VASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTV 172
Query: 263 DEKLEQG 269
+E++
Sbjct: 173 EERIGAA 179
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 163 bits (415), Expect = 4e-48
Identities = 53/109 (48%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
T + G+ E T G G AG V VHYTG L DG FDSSK R +PF F LG G VI
Sbjct: 101 TTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVI 159
Query: 87 KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
K WD G+ MK V T P+ YG +G+ IPP++TLVFEVE++
Sbjct: 160 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLD 208
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 159 bits (403), Expect = 2e-44
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 1/160 (0%)
Query: 256 DTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD-FDGGFEGEQETERK 314
D + D+ L + LK G T+FK +E+A + Y K + Y++ E + +
Sbjct: 210 DVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ 269
Query: 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKD 374
+C LN C LK+ + A D C +A+E++P+N KA +RR + L E + A D
Sbjct: 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 329
Query: 375 FQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF 414
+K +I P +KA +L + KQK++ QK KEK YA MF
Sbjct: 330 LKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics,
structural genomics consortium, SGC, PE prolyl CIS-trans
isomerase; 1.82A {Homo sapiens}
Length = 125
Score = 150 bits (380), Expect = 4e-44
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 20 ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTL-LDGTVFDSSKTR--GEPF 76
+S + + ++ ++ P + G + VHY G L DG++F S+ G+P
Sbjct: 3 QSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPI 62
Query: 77 EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
F LG + +K WD+G+ M E P YGK+G IPP+STL+F ++++
Sbjct: 63 WFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLEI 121
Query: 137 E 137
Sbjct: 122 R 122
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506
binding protein; 1.85A {Arabidopsis thaliana} SCOP:
d.26.1.1 PDB: 1y0o_A
Length = 129
Score = 149 bits (379), Expect = 6e-44
Identities = 44/121 (36%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
G+ K G G G +K HY G L +G VFDSS RG+P F +G G+VI
Sbjct: 9 VSPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVI 67
Query: 87 KAWDRGI------ATMKKDEVAVFTCKPEYAYGKQG-----SPPTIPPDSTLVFEVEMIS 135
K WD+GI M PE AYG +G IPP S L+F++E I
Sbjct: 68 KGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 127
Query: 136 W 136
Sbjct: 128 K 128
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase,
isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Length = 167
Score = 137 bits (346), Expect = 1e-38
Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
G++ + G G P+ K +VHYTG L DGTVFDSS+ RG+P F +VI
Sbjct: 34 KLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVI 91
Query: 87 KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
K W + M++ + + AYG G IPP S L F+VE+IS
Sbjct: 92 KGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 125 bits (316), Expect = 9e-34
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
G+ ++ G G P V V YTG L+DGTVFDS++ G+P F + QVI W
Sbjct: 107 GLQYKVINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWT 163
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
+ M AYG + I P+ TL+F++ +IS
Sbjct: 164 EALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 120 bits (302), Expect = 1e-31
Identities = 47/109 (43%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
T G++ ++ G G+ P V V+Y GTL+DG FD+S TRGEP F L VI
Sbjct: 118 TSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVI 174
Query: 87 KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
W G+ +KK PE AYGK G P IPP+STLVF+VE++
Sbjct: 175 PGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLD 222
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 119 bits (301), Expect = 1e-31
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
G+L TPG G P A +V+V Y G L DG +FD S +P F L VI W
Sbjct: 118 GILMTELTPGTGPK-PDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWT 171
Query: 91 RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
+ M + AYG +G+ I P + LVFE+E+I+
Sbjct: 172 SALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 111 bits (279), Expect = 2e-29
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
+ + L++ G FK + A Y +A+ + H
Sbjct: 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD------------ATPQDQAVLH 68
Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
N A C LKL+ A+ + KAIE + + KA +RR A L + A D Q+ + +
Sbjct: 69 RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128
Query: 382 DPNNKAAVQKLTQ 394
+P NK + L
Sbjct: 129 EPKNKVFQEALRN 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 108 bits (273), Expect = 1e-28
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 15/142 (10%)
Query: 260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
L S+E + + LK G K + FE A Y KAI E
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAI---------------ELNPANAV 47
Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
N A KL A C++AI ++P KA+ R G A LN+ A ++K L
Sbjct: 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107
Query: 380 QIDPNNKAAVQKLTQTKQKLRE 401
++DP+N+ L + KLRE
Sbjct: 108 ELDPDNETYKSNLKIAELKLRE 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 109 bits (274), Expect = 2e-28
Identities = 35/172 (20%), Positives = 74/172 (43%), Gaps = 19/172 (11%)
Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
+D L++ + LK + YFK +E A + Y +AI E + +
Sbjct: 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAI---------------ELNPSNAIYY 50
Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
N ++ L+ + A +AIEL+ K ++RR + + L + A +D++ V+++
Sbjct: 51 GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110
Query: 382 DPNNKAAVQKLTQTKQKLREQK----IKEKQVYANMFDKFAKHDTEKEEEEK 429
P++K A K + + ++++ I + ++ D E+E
Sbjct: 111 KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 103 bits (258), Expect = 2e-26
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 15/142 (10%)
Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
+ LKE+G F K+ A Y +AI R + + N A+
Sbjct: 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAI---------------TRNPLVAVYYTNRAL 51
Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
C LK++Q + A C +A+EL+ + KA F G L++ + A + Q+ + +
Sbjct: 52 CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111
Query: 387 AAVQKLTQTKQKLREQKIKEKQ 408
+ ++ ++K
Sbjct: 112 LNFGDDIPSALRIAKKKRWNSI 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 101 bits (255), Expect = 3e-26
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
E + K +G YFK+ + A R+Y +A+ +R + N A
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAV---------------KRDPENAILYSNRAA 55
Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
CL KL + + A D CD I L+ K + R+ + + E A++ ++ LQ+DP+N+
Sbjct: 56 CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
Query: 387 AAVQKLTQTKQ 397
A + + +
Sbjct: 116 EAREGVRNCLR 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 101 bits (255), Expect = 3e-26
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 17/134 (12%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
+ G YF + + A + Y + I +R + N A L KL
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMI---------------KRAPEDARGYSNRAAALAKL 51
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP--NNKAAV 389
A C+KAIE +PN +A+ R+ A + + E A + D NN ++
Sbjct: 52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111
Query: 390 QKLTQTKQKLREQK 403
+++ Q K +Q+
Sbjct: 112 REIDQLYYKASQQR 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 101 bits (254), Expect = 6e-26
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
+K +G F++ + A ++Y +AI +R + N A C KL
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAI---------------KRNPKDAKLYSNRAACYTKL 63
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
+ + A C++ I+LEP K + R+ A + + A +QK L +D + K A
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
Query: 392 LTQTKQKLR 400
+
Sbjct: 124 YQRCMMAQY 132
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 100 bits (251), Expect = 1e-25
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 15/133 (11%)
Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAA 325
+EQ LKE+G + A + Y +AI + + N +
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAI---------------KLDPHNHVLYSNRS 45
Query: 326 MCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
K + A + K ++L+P+ K + R+ A LN E A++ +++ L+ + NN
Sbjct: 46 AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105
Query: 386 KAAVQKLTQTKQK 398
+ L + +
Sbjct: 106 PQLKEGLQNMEAR 118
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 105 bits (265), Expect = 7e-25
Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 25/171 (14%)
Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAA 325
L++ + LK + YFK +E A + Y +AI E + + N +
Sbjct: 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAI---------------ELNPSNAIYYGNRS 47
Query: 326 MCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
+ L+ + A +AIEL+ K ++RR + + L + A +D++ V+++ P++
Sbjct: 48 LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107
Query: 386 KAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVM 436
K A K + + ++++ F++ D K + + M
Sbjct: 108 KDAKMKYQECNKIVKQKA----------FERAIAGDEHKRSVVDSLDIESM 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 97.1 bits (242), Expect = 5e-24
Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
LK G + ++ A Y +A+ N A
Sbjct: 14 LKSEGNAAMARKEYSKAIDLYTQAL---------------SIAPANPIYLSNRAAAYSAS 58
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
Q + A + + A ++P KA+ R G A D+ + + A++ ++K ++ + N + K
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
Query: 392 --LTQTKQKLREQKIKEKQ 408
L TK+K+ E +
Sbjct: 119 RGLETTKRKIEEANRGAEP 137
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 100 bits (251), Expect = 2e-23
Identities = 22/143 (15%), Positives = 57/143 (39%), Gaps = 13/143 (9%)
Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
++++ L E + ++ A Y+ + + E +
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVM-----------KTEPSVAEYTVRSKERI 278
Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
C K ++ A C + +++EP+N A R AYL + A +D++ + + N
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338
Query: 385 NKAAVQKLTQTKQKLREQKIKEK 407
++ + L + ++ L ++ +++
Sbjct: 339 DQQIREGLEKAQRLL--KQSQKR 359
Score = 93.1 bits (232), Expect = 6e-21
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 15/140 (10%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
E G + A + A+ + + A L +
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAV---------------DGDPDNYIAYYRRATVFLAM 50
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
++K A K I L+ + A +RG+ L + + AE DF+KVL+ +P+ + +
Sbjct: 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110
Query: 392 LTQTKQKLREQKIKEKQVYA 411
+Q + Q+++ + + A
Sbjct: 111 ESQLVKADEMQRLRSQALDA 130
Score = 80.0 bits (198), Expect = 1e-16
Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 15/152 (9%)
Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
K ++ + L+ + F + A K + E
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKIL---------------EVCVWDAELRELR 160
Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
A C +K + + A A +L+ +N +AF++ Y L + EL+ + ++ L++D +
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220
Query: 385 NKAAVQKLTQTKQKLREQKIKEKQVYANMFDK 416
+K Q K+ + + E+ + +
Sbjct: 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252
Score = 64.2 bits (157), Expect = 2e-11
Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 30/129 (23%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
R T + K + A + K I K TA L LLK +
Sbjct: 43 RATVFLAMGKSKAALPDLTKVI---------------ALKMDFTAARLQRGHLLLKQGKL 87
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGN---------------AYLDLNEPELAEKDFQKVL 379
A+D K ++ P+ ++ D + A K+L
Sbjct: 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147
Query: 380 QIDPNNKAA 388
++ +
Sbjct: 148 EVCVWDAEL 156
Score = 38.0 bits (89), Expect = 0.006
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ + G L + A F + DP+N A
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIA 39
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 97.3 bits (242), Expect = 7e-23
Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 19/187 (10%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
LKE+G F K+ A Y +AI R + + N A+C LK+
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAI---------------TRNPLVAVYYTNRALCYLKM 51
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
+Q + A C +A+EL+ + KA F G L++ + A + Q+ + +
Sbjct: 52 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
Query: 392 LTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGEWGAEERGRES 451
+ ++ ++K + + + + + L E G E
Sbjct: 112 DIPSALRIAKKKRWNSIEER----RIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167
Query: 452 TNFEKEN 458
+
Sbjct: 168 DGHIRAQ 174
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 99.4 bits (248), Expect = 1e-22
Identities = 28/182 (15%), Positives = 66/182 (36%), Gaps = 32/182 (17%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
L E + ++ A Y+ + + E + C K
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVM-----------KTEPSIAEYTVRSKERICHCFSKD 308
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
++ A C + +++EP+N A R AYL + A +D++ + + N++ +
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368
Query: 392 LTQTKQKLREQKIKE----------------KQVYANMF-----DKFAKHDTEKEEEEKK 430
L + ++ L++ + ++ + Y + D F + +K+ E+K
Sbjct: 369 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 428
Query: 431 KE 432
+
Sbjct: 429 ID 430
Score = 93.6 bits (233), Expect = 9e-21
Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 21/157 (13%)
Query: 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL 322
+ + + E G + A + A+ + +
Sbjct: 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAV---------------DGDPDNYIAYY 64
Query: 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382
A L + ++K A K I+L+ + A +RG+ L + + AE DF+KVL+ +
Sbjct: 65 RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124
Query: 383 PNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAK 419
P+ + +Q K E Q +
Sbjct: 125 PSENEEKEAQSQL------IKSDEMQRLRSQALNAFG 155
Score = 79.3 bits (196), Expect = 4e-16
Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 15/152 (9%)
Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
K ++ + L+ + F + A K + E
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL---------------EVCVWDAELRELR 183
Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
A C +K + + A A +L+ +N +AF++ Y L + EL+ + ++ L++D +
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Query: 385 NKAAVQKLTQTKQKLREQKIKEKQVYANMFDK 416
+K Q K+ + + E+ + +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275
Score = 65.9 bits (161), Expect = 9e-12
Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 30/142 (21%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
R T + K + A + K I + K TA L LLK +
Sbjct: 66 RATVFLAMGKSKAALPDLTKVI---------------QLKMDFTAARLQRGHLLLKQGKL 110
Query: 335 KPAKDQCDKAIELEPNNEKA---------------FFRRGNAYLDLNEPELAEKDFQKVL 379
A+D K ++ P+ + + + A K+L
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170
Query: 380 QIDPNNKAAVQKLTQTKQKLRE 401
++ + + + K E
Sbjct: 171 EVCVWDAELRELRAECFIKEGE 192
Score = 62.4 bits (152), Expect = 1e-10
Identities = 14/135 (10%), Positives = 42/135 (31%), Gaps = 27/135 (20%)
Query: 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329
+L + R + K+ + A + K A + K T +
Sbjct: 178 ELRELRAECFIKEGEPRKAISDLKAAS---------------KLKNDNTEAFYKISTLYY 222
Query: 330 KLKQAKPAKDQCDKAIELEPNNEKAF------------FRRGNAYLDLNEPELAEKDFQK 377
+L + + + + ++L+ ++++ F + A ++
Sbjct: 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282
Query: 378 VLQIDPNNKAAVQKL 392
V++ +P+ +
Sbjct: 283 VMKTEPSIAEYTVRS 297
Score = 39.7 bits (93), Expect = 0.002
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
H ++ + L + +K +E G L + A F +
Sbjct: 6 HHSSGVDLGTENLYFQSMADVEKHLE-----------LGKKLLAAGQLADALSQFHAAVD 54
Query: 381 IDPNNKAA 388
DP+N A
Sbjct: 55 GDPDNYIA 62
Score = 39.3 bits (92), Expect = 0.002
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 23/117 (19%)
Query: 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329
LK+R Y ++ ++ A ++Y+ A E +
Sbjct: 330 NALKDRAEAYLIEEMYDEAIQDYETAQ---------------EHNENDQQIREGLEKAQR 374
Query: 330 KLKQAKPAKDQCDKAIELEPNNE---KAFFRRG-----NAYLDLNEPELAEKDFQKV 378
LKQ++ ++ + KA+ + + + + E + AEK F +
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDI 431
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 91.6 bits (228), Expect = 2e-22
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 23/144 (15%)
Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
+Q KE G +K+ F+ A ++Y KA E T N A
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAK---------------ELDPTNMTYITNQAA 46
Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNE-------KAFFRRGNAYLDLNEPELAEKDFQKVL 379
+ ++ C+KAIE+ N KA+ R GN+Y + + A + K L
Sbjct: 47 VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
Query: 380 QIDPNNKAAVQKLTQTKQKLREQK 403
+K Q ++ L+EQ+
Sbjct: 107 AEHRTPDVL-KKCQQAEKILKEQE 129
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 92.2 bits (230), Expect = 2e-21
Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 17/131 (12%)
Query: 273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK 332
+ G YF + + A + Y + I +R + N A L KL
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMI---------------KRAPEDARGYSNRAAALAKLM 187
Query: 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA--VQ 390
A C+KAIE +PN +A+ R+ A + + E A + D +
Sbjct: 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 247
Query: 391 KLTQTKQKLRE 401
++ Q K +
Sbjct: 248 EIDQLYYKASQ 258
Score = 79.9 bits (198), Expect = 4e-17
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 17/136 (12%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
K G ++K +F+ A +Y KA E K +T N A +
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAW---------------ELHKDITY-LNNRAAAEYEK 51
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
+ + A + A+E + ++ + D +K ++ + +
Sbjct: 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111
Query: 392 -LTQTKQKLREQKIKE 406
TK + E+++K+
Sbjct: 112 ADILTKLRNAEKELKK 127
Score = 73.0 bits (180), Expect = 1e-14
Identities = 15/114 (13%), Positives = 24/114 (21%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
K E + +
Sbjct: 111 TADILTKLRNAEKELKKAEAEA---------------YVNPEKAEEARLEGKEYFTKSDW 155
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A + I+ P + + + R A L A D K ++ DPN A
Sbjct: 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209
Score = 68.7 bits (169), Expect = 3e-13
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 16/114 (14%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
++ + + KK I E + H A L KL+ A
Sbjct: 78 ISKSFARIGNAYHKLGDLKKTI---------------EYYQKSLTEH-RTADILTKLRNA 121
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ + + + P + G Y ++ A K + ++++ P +
Sbjct: 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175
Score = 41.0 bits (97), Expect = 4e-04
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-----NKAAV 389
+ GN + + + A + + K ++ + N+AA
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAA 47
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 86.6 bits (215), Expect = 1e-20
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 23/143 (16%)
Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
S+ + K+ G +KQ FE A +Y KAI E + +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI---------------ELDPSNITFY 45
Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNE-------KAFFRRGNAYLDLNEPELAEKD 374
N A + K+ C+KA+E+ KA R GNA+ N+ LA +
Sbjct: 46 NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105
Query: 375 FQKVLQIDPNNKAAVQKLTQTKQ 397
F + L + + +K+ + ++
Sbjct: 106 FHRSLSEFRDPELV-KKVKELEK 127
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 91.7 bits (228), Expect = 4e-20
Identities = 37/201 (18%), Positives = 69/201 (34%), Gaps = 16/201 (7%)
Query: 201 ENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQL 260
+ L Y E + + + S ++T FE+ D
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC 320
+ K + L+ G F ++ A + KKAI E + +
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI---------------ELFPRVNS- 272
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
++ A+ + + + DKA++L+ NN ++ RG L + A KDF K +
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332
Query: 381 IDPNNKAAVQKLTQTKQKLRE 401
+DP N +L + +
Sbjct: 333 LDPENIFPYIQLACLAYRENK 353
Score = 90.6 bits (225), Expect = 1e-19
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 24/147 (16%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
++ F+ A + Y AI E + L ++ A + K
Sbjct: 378 FAEILTDKNDFDKALKQYDLAI---------------ELENKLDGIYVGIAPLVGKATLL 422
Query: 335 KPAKDQ---------CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
+KA +L+P +E+A L + + A F++ +
Sbjct: 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482
Query: 386 KAAVQKLTQTKQKLREQKIKEKQVYAN 412
+ +Q +T + +Q+I+ V A
Sbjct: 483 EEKLQAITFAEAAKVQQRIRSDPVLAK 509
Score = 81.3 bits (201), Expect = 1e-16
Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 17/170 (10%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
LK++G +F+ K++ A + Y A+ K + N + C + +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWAL----------------ELKEDPVFYSNLSACYVSV 52
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV-LQIDPNNKAAVQ 390
K + KA+EL+P+ K RR +A L + A D + L D N+ +
Sbjct: 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112
Query: 391 KLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLG 440
L + K K+KEK + + + +E+K + + + ++
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162
Score = 80.2 bits (198), Expect = 2e-16
Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
RG F ++ A +++ KA E ++ A + +
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAK---------------ELDPENIFPYIQLACLAYRENKF 354
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ +A P + D N+ + A K + ++++
Sbjct: 355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408
Score = 73.6 bits (181), Expect = 3e-14
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 15/111 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
++ + KA+ + ++ + + L+
Sbjct: 276 MALIMADRNDSTEYYNYFDKAL---------------KLDSNNSSVYYHRGQMNFILQNY 320
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
A DKA EL+P N + + N+ + E F + + P
Sbjct: 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371
Score = 39.3 bits (92), Expect = 0.002
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387
A +GN + + + A K + L++ +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVF 41
Score = 38.6 bits (90), Expect = 0.004
Identities = 16/134 (11%), Positives = 41/134 (30%), Gaps = 9/134 (6%)
Query: 259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT 318
LN D + + ER K + + A ++ ++++ L
Sbjct: 100 SLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159
Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
+ + + + + + D++ E + + A++ F K
Sbjct: 160 S--VTSMASFFGIFKPELTFANYDESNEADKELMNGL--SNLYKRSPESYDKADESFTKA 215
Query: 379 LQ-----IDPNNKA 387
+ +D NN+
Sbjct: 216 ARLFEEQLDKNNED 229
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 87.9 bits (218), Expect = 1e-18
Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 5/148 (3%)
Query: 275 RGTTYFKQDKFELACRNYKKAI---PYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
+ F+ A + Y A + G K T+ A + L
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEE--VQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
++ A KA EL+P +E+A L + + + A + F+ + +Q
Sbjct: 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501
Query: 392 LTQTKQKLREQKIKEKQVYANMFDKFAK 419
T + +++++ + + +
Sbjct: 502 TTFAEAAKIQKRLRADPIISAKMELTLA 529
Score = 82.8 bits (205), Expect = 4e-17
Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 248 MNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEG 307
+ + + ++ + L G +F ++ A +++I
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI----------- 270
Query: 308 EQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE 367
T + ++ A+ L + ++ KA++L P ++ RG Y L +
Sbjct: 271 ----NLHPTPNS-YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325
Query: 368 PELAEKDFQKVLQIDPNNKAA 388
+ A++DFQK ++P N
Sbjct: 326 YKNAKEDFQKAQSLNPENVYP 346
Score = 82.5 bits (204), Expect = 6e-17
Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 15/154 (9%)
Query: 259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT 318
L+ ++ LK RG +F F A + Y+ AI E
Sbjct: 15 GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI---------------ELDPNEP 59
Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
+ N + C + + + KA+E++P++ KA RR +A L A D +
Sbjct: 60 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119
Query: 379 LQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYAN 412
+ A+++ + + + K+ + + +
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153
Score = 76.3 bits (188), Expect = 5e-15
Identities = 14/114 (12%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
RG YF ++ A +++KA ++ A L K +
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQ---------------SLNPENVYPYIQLACLLYKQGKF 360
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
++ ++ P + D + + A K + +++ +
Sbjct: 361 TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414
Score = 74.4 bits (183), Expect = 2e-14
Identities = 31/195 (15%), Positives = 52/195 (26%), Gaps = 40/195 (20%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
+KQ KF + + + + TL A L
Sbjct: 350 LACLLYKQGKFTESEAFFNETK---------------LKFPTLPEVPTFFAEILTDRGDF 394
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNA----------------YLDLNEPELAEKDFQKV 378
A Q D A LE EK G LD + A K K
Sbjct: 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454
Query: 379 LQIDPNNKAAVQKLTQTKQKLREQK---------IKEKQVYANMFDKFAKHDTEKEEEEK 429
++DP ++ A L Q K ++ + + + K ++
Sbjct: 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRL 514
Query: 430 KKEPDVMKTLGEWGA 444
+ +P + + A
Sbjct: 515 RADPIISAKMELTLA 529
Score = 74.0 bits (182), Expect = 3e-14
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 15/111 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
T ++ + + ++KA+ + + + L+
Sbjct: 282 LALTLADKENSQEFFKFFQKAV---------------DLNPEYPPTYYHRGQMYFILQDY 326
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
K AK+ KA L P N + + + +E F + P
Sbjct: 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377
Score = 63.6 bits (155), Expect = 5e-11
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 11/105 (10%)
Query: 284 KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK 343
+ + +++ N K A
Sbjct: 2 SHMNGEPDIAQLK-----------GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQY 50
Query: 344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
AIEL+PN + Y+ + E + K L+I P++ A
Sbjct: 51 AIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95
Score = 61.7 bits (150), Expect = 2e-10
Identities = 18/188 (9%), Positives = 40/188 (21%), Gaps = 17/188 (9%)
Query: 201 ENLEKALEKFKYKEKSRLFVQPQ-HLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
N A+ + F + +K + + +
Sbjct: 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS 166
Query: 260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
L S + L ++ ++ A A+ + T
Sbjct: 167 LASFFGIFDSHL---EVSSVNTSSNYDTAYALLSDAL-------------QRLYSATDEG 210
Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
+ + L N A G + N A+ Q+ +
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270
Query: 380 QIDPNNKA 387
+ P +
Sbjct: 271 NLHPTPNS 278
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 83.1 bits (206), Expect = 5e-18
Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 17/166 (10%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G K+ + LA + Y+ A+ +R T +
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAV---------------DRDTTRLDMYGQIGSYFYNKGNF 124
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
A +K I + K F+ G AY E A+ F KVL++ PN +
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR 184
Query: 395 TKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLG 440
+ ++K + + K + + + +
Sbjct: 185 ANAAQDPDTKQGLAKPY--YEKLIEVCAPGGAKYKDELIEANEYIA 228
Score = 74.6 bits (184), Expect = 3e-15
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 18/117 (15%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ- 333
FK + + A + K +K + A+C +L +
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLE---------------AKKYNSPYIYNRRAVCYYELAKY 53
Query: 334 --AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A+ + + F G + + LA + +Q + D
Sbjct: 54 DLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110
Score = 72.7 bits (179), Expect = 1e-14
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 26/139 (18%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y+ ++ A ++ K + E K + +L A
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVL---------------ELKPNIYIGYLWRARANAAQDPD 192
Query: 335 ---KPAKDQCDKAIELEPNNEK--------AFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383
AK +K IE+ A Y + A+ ++ +L +DP
Sbjct: 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252
Query: 384 NNKAAVQKLTQTKQKLREQ 402
NK A+ L +
Sbjct: 253 TNKKAIDGLKMKLEHHHHH 271
Score = 70.8 bits (174), Expect = 7e-14
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 18/117 (15%)
Query: 275 RGTTYFKQDKFELA---CRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
R Y++ K++LA Y + K +A L+K
Sbjct: 43 RAVCYYELAKYDLAQKDIETYFSKV---------------NATKAKSADFEYYGKILMKK 87
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
Q A Q A++ + + + G+ + + LA + +K ++ +
Sbjct: 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144
Score = 70.0 bits (172), Expect = 1e-13
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 18/122 (14%)
Query: 273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK 332
+ G+ ++ + F LA + +K I T K
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQI---------------RPTTTDPKVFYELGQAYYYNK 156
Query: 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN---EPELAEKDFQKVLQIDPNNKAAV 389
+ A K +EL+PN + R A + + LA+ ++K++++ A
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216
Query: 390 QK 391
+
Sbjct: 217 KD 218
Score = 58.1 bits (141), Expect = 1e-09
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKD---FQK 377
A L K A + +K + N+ + RR Y +L + +LA+KD +
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 378 VLQIDPNNKAA 388
+ A
Sbjct: 66 KVNATKAKSAD 76
Score = 44.6 bits (106), Expect = 3e-05
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
N+ FR + N A + F K+ N+
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI 39
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 85.7 bits (212), Expect = 5e-18
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 8/129 (6%)
Query: 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329
LL E G F + + A +++ A+ ++ +K A N
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNALLL--------VKKTQSNEKPWAATWANLGHAYR 527
Query: 330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV 389
KLK A D ++ + L N+ YL P LA + L I PN A
Sbjct: 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587
Query: 390 QKLTQTKQK 398
L + ++
Sbjct: 588 DLLKRALEE 596
Score = 73.3 bits (180), Expect = 5e-14
Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 15/118 (12%)
Query: 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK 330
LL + T F + +F K + E + L +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKIL---------------EIDPYNLDVYPLHLASLHE 351
Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ + ++ P + G YL +N+ A + F K +DP A
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409
Score = 71.0 bits (174), Expect = 3e-13
Identities = 15/111 (13%), Positives = 26/111 (23%), Gaps = 15/111 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y +K A R + K+ + A +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSS---------------TMDPQFGPAWIGFAHSFAIEGEH 423
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
A A L + G ++ L LA + Q + +
Sbjct: 424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474
Score = 65.2 bits (159), Expect = 2e-11
Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 15/125 (12%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
++ + + + A Y A + +L M ++L
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAA---------------RLFQGTHLPYLFLGMQHMQLGNI 457
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
A + + L + G + ++ + A FQ L + ++ +
Sbjct: 458 LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517
Query: 395 TKQKL 399
T L
Sbjct: 518 TWANL 522
Score = 65.2 bits (159), Expect = 2e-11
Identities = 9/111 (8%), Positives = 29/111 (26%), Gaps = 15/111 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
+ + + + +R L + L + +
Sbjct: 345 HLASLHESGEKNKLYLISNDLV---------------DRHPEKAVTWLAVGIYYLCVNKI 389
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
A+ K+ ++P A+ +++ E + A + ++
Sbjct: 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440
Score = 64.5 bits (157), Expect = 3e-11
Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 22/136 (16%)
Query: 275 RGTTYFKQDKFELACRNYKKAI---PY-------------------LDFDGGFEGEQETE 312
RG Y F+ A YK+A+ D ++
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265
Query: 313 RKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAE 372
+ + + +I + + + +
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325
Query: 373 KDFQKVLQIDPNNKAA 388
K+L+IDP N
Sbjct: 326 AITTKILEIDPYNLDV 341
Score = 50.6 bits (121), Expect = 7e-07
Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 30/134 (22%)
Query: 282 QDKFELA-----CRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP 336
D F LA +Y +A L + + +AC AA CL+KL +
Sbjct: 118 NDAFWLAQVYCCTGDYARAKCLL---------TKEDLYNRSSACRYLAAFCLVKLYDWQG 168
Query: 337 AKDQCDKAIELEPNNEK----------------AFFRRGNAYLDLNEPELAEKDFQKVLQ 380
A + + + + + RG Y +L+ + A++ +++ L
Sbjct: 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228
Query: 381 IDPNNKAAVQKLTQ 394
+D A +L
Sbjct: 229 VDAKCYEAFDQLVS 242
Score = 47.9 bits (114), Expect = 5e-06
Identities = 19/168 (11%), Positives = 45/168 (26%), Gaps = 11/168 (6%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC-HLNAAMCLLKLKQ 333
K ++ A + P+ + + L A L
Sbjct: 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
AK+ +A+ ++ +AF + + +L + E + A ++ L
Sbjct: 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275
Query: 394 QTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGE 441
K + + + D +K D++ +
Sbjct: 276 MLKLNKTSHEDELR----------RAEDYLSSINGLEKSSDLLLCKAD 313
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 82.0 bits (203), Expect = 2e-17
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 6/129 (4%)
Query: 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK 330
++ E G F+ +++ A + + A+ + + N K
Sbjct: 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKI------KAIGNEVTVDKWEPLLNNLGHVCRK 248
Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390
LK+ A D +A+ L P N + G + + E A F L + ++ +V
Sbjct: 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308
Query: 391 KLTQTKQKL 399
L +
Sbjct: 309 MLGHCIEMY 317
Score = 69.2 bits (170), Expect = 4e-13
Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 17/141 (12%)
Query: 250 NFEKIKDTWQLNSDEKLEQ-GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGE 308
++ K +T S + L++ ++ ++ F++ + +
Sbjct: 2 SYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM------------ 49
Query: 309 QETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL-NE 367
E+ +C L++L +A K ++L P+N ++F G YL + ++
Sbjct: 50 ---EKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK 106
Query: 368 PELAEKDFQKVLQIDPNNKAA 388
E A + K ++ A
Sbjct: 107 NEHARRYLSKATTLEKTYGPA 127
Score = 65.0 bits (159), Expect = 9e-12
Identities = 23/112 (20%), Positives = 31/112 (27%), Gaps = 16/112 (14%)
Query: 275 RGTTYFKQ-DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
G Y K E A R KA +KT + +
Sbjct: 96 VGCYYLMVGHKNEHARRYLSKAT---------------TLEKTYGPAWIAYGHSFAVESE 140
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
A A +L G Y N +LAE+ F + L I P +
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192
Score = 63.9 bits (156), Expect = 2e-11
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 15/117 (12%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G ++ + + + A Y A + K L + +
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAA---------------QLMKGCHLPMLYIGLEYGLTNNS 175
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
K A+ +A+ + P + G E + AEK F L+ V
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Score = 57.7 bits (140), Expect = 2e-09
Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 16/115 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL-KQ 333
T + +K K + + + L + +
Sbjct: 62 HIGTLVELNKANELFYLSHKLV---------------DLYPSNPVSWFAVGCYYLMVGHK 106
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ A+ KA LE A+ G+++ +E + A + Q+
Sbjct: 107 NEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161
Score = 52.3 bits (126), Expect = 1e-07
Identities = 11/97 (11%), Positives = 25/97 (25%), Gaps = 15/97 (15%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G K K+ A +++A+ + + +
Sbjct: 242 LGHVCRKLKKYAEALDYHRQAL---------------VLIPQNASTYSAIGYIHSLMGNF 286
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELA 371
+ A D A+ L ++ + G+ A
Sbjct: 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323
Score = 49.2 bits (118), Expect = 1e-06
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 303 GGFEGEQETERKKTLTA------CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFF 356
G + ET +++ ++ A K +E +P +
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 357 RRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
++LN+ K++ + P+N
Sbjct: 61 VHIGTLVELNKANELFYLSHKLVDLYPSN 89
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 79.9 bits (198), Expect = 4e-17
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
++ E A Y KA+ E + + A + +
Sbjct: 63 FANLLSSVNELERALAFYDKAL---------------ELDSSAATAYYGAGNVYVVKEMY 107
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
K AKD +KA+ N F+ G + L +P+LA Q+ ++++ N+ A
Sbjct: 108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Score = 78.7 bits (195), Expect = 8e-17
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
GT K ++ +LA ++A+ E + T MCL
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAV---------------ELNENDTEARFQFGMCLANEGML 175
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A Q E +P + AF+ G Y E A + K + I P++ A
Sbjct: 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
Score = 74.5 bits (184), Expect = 2e-15
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y ++ ++ A ++KA+ L+KL+Q
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKAL---------------RAGMENGDLFYMLGTVLVKLEQP 141
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
K A +A+EL N+ +A F+ G + + A F V + DP + A
Sbjct: 142 KLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Score = 70.2 bits (173), Expect = 7e-14
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
+ + +E A + KAI E K ++N A L + +
Sbjct: 29 QMGRGSEFGDYEKAAEAFTKAI---------------EENKEDAIPYINFANLLSSVNEL 73
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ A DKA+EL+ + A++ GN Y+ + A+ F+K L+ N
Sbjct: 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127
Score = 61.4 bits (150), Expect = 7e-11
Identities = 14/68 (20%), Positives = 24/68 (35%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
+ + A + KAIE + + N +NE E A + K L+
Sbjct: 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE 85
Query: 381 IDPNNKAA 388
+D + A
Sbjct: 86 LDSSAATA 93
Score = 52.1 bits (126), Expect = 7e-08
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 15/93 (16%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + + A + E+ NA + +
Sbjct: 165 FGMCLANEGMLDEALSQFAAVT---------------EQDPGHADAFYNAGVTYAYKENR 209
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE 367
+ A + DKAI+++P++ A + +
Sbjct: 210 EKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
Score = 41.0 bits (97), Expect = 4e-04
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 337 AKDQCDKAIELEPNNEKAFFRRGNAYL----DLNEPELAEKDFQKVLQIDPNNKAA 388
+ + L P G + + + E A + F K ++ + +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 79.0 bits (195), Expect = 4e-17
Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 1/140 (0%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPY-LDFDGGFEGEQETERKKTLTACHLNAAMCLLK 330
+ ++ + + + A +++ I +D + + + + A+ K
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390
+ A + ++ PNN + + + A + ++K+LQ++ +N AA
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126
Query: 391 KLTQTKQKLREQKIKEKQVY 410
L EQ+ K+ +
Sbjct: 127 FLGNYYYLTAEQEKKKLETD 146
Score = 72.9 bits (179), Expect = 5e-15
Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 17/131 (12%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL-LK 330
L+ + + + A R Y+K + + + A ++ L
Sbjct: 91 LEACAEMQVCRGQEKDALRMYEKIL---------------QLEADNLAANIFLGNYYYLT 135
Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390
+Q K + K + + A +R G + L E A QKV+ P+ A +
Sbjct: 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQK 194
Query: 391 KLTQTKQKLRE 401
L + + +E
Sbjct: 195 TLDKILRIEKE 205
Score = 70.9 bits (174), Expect = 3e-14
Identities = 28/145 (19%), Positives = 43/145 (29%), Gaps = 16/145 (11%)
Query: 258 WQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTL 317
W KL E Y K ++ A YK+ + ++
Sbjct: 43 WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL---------------QKAPNN 87
Query: 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPEL-AEKDFQ 376
C A + Q K A +K ++LE +N A GN Y E E +
Sbjct: 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147
Query: 377 KVLQIDPNNKAAVQKLTQTKQKLRE 401
K L + A + +K
Sbjct: 148 KKLSSPTKMQYARYRDGLSKLFTTR 172
Score = 36.6 bits (85), Expect = 0.009
Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK--QVYA 411
++ +A ++ + A F++ + ++ + K K+ + Y
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65
Query: 412 NM--FDKFAKHDTEKEEEEKKKEPDVMKTLGE 441
+DK A ++ ++ D ++ E
Sbjct: 66 KNRNYDK-AYLFYKELLQKAPNNVDCLEACAE 96
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 76.7 bits (189), Expect = 6e-17
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 18/135 (13%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
L G ++ K++ A + ++ L C L
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALC---------------MLDHYDARYFLGLGACRQSL 65
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAA 388
+ A ++ N + F +L L + + AE F + +A
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 389 VQKLTQTKQKLREQK 403
+ + + +K
Sbjct: 126 AARAGAMLEAVTARK 140
Score = 46.7 bits (111), Expect = 2e-06
Identities = 10/59 (16%), Positives = 20/59 (33%)
Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401
L + + + G + + A+K FQ + +D + L +Q L
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 78.9 bits (195), Expect = 1e-16
Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 15/133 (11%)
Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
ERG Y LA ++ +A+ + + + L +
Sbjct: 48 ERGVLYDSLGLRALARNDFSQAL---------------AIRPDMPEVFNYLGIYLTQAGN 92
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
A + D +EL+P A RG A +LA+ D Q DPN+ L
Sbjct: 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152
Query: 394 QTKQKLREQKIKE 406
+QKL E++ KE
Sbjct: 153 LAEQKLDEKQAKE 165
Score = 68.5 bits (168), Expect = 4e-13
Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 23/136 (16%)
Query: 275 RGTTYFKQDKFELACRNYKKAI------PYLDFDGGFEGEQETERKKTLTAC-------- 320
RG + + +LA + P+ EQ+ + K+
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEKSD 175
Query: 321 -----HLNAAMCLLKLKQA---KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAE 372
L + + + K L + + F G YL L + + A
Sbjct: 176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235
Query: 373 KDFQKVLQIDPNNKAA 388
F+ + + +N
Sbjct: 236 ALFKLAVANNVHNFVE 251
Score = 64.6 bits (158), Expect = 7e-12
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 14/127 (11%)
Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
S+ + ++L + E+ ++ +
Sbjct: 1 SNTSWRKSEVL---AVPLQPTLQQEVILARMEQIL-----------ASRALTDDERAQLL 46
Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
+ L A++ +A+ + P+ + F G + A + F VL++
Sbjct: 47 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106
Query: 382 DPNNKAA 388
DP A
Sbjct: 107 DPTYNYA 113
Score = 59.2 bits (144), Expect = 5e-10
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 16/128 (12%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + F+ A + + E T HLN + L +
Sbjct: 83 LGIYLTQAGNFDAAYEAFDSVL---------------ELDPTYNYAHLNRGIALYYGGRD 127
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
K A+D + +PN+ A L+E + A++ ++ + + +
Sbjct: 128 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ-AKEVLKQHFEKSDKEQWGWNIVEF 186
Query: 395 TKQKLREQ 402
+ EQ
Sbjct: 187 YLGNISEQ 194
Score = 48.8 bits (117), Expect = 1e-06
Identities = 9/100 (9%), Positives = 20/100 (20%), Gaps = 15/100 (15%)
Query: 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPA 337
+Q E + + L+ + L L A
Sbjct: 190 NISEQTLMERLKADATDNT---------------SLAEHLSETNFYLGKYYLSLGDLDSA 234
Query: 338 KDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK 377
A+ +N L + + + +
Sbjct: 235 TALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 78.0 bits (193), Expect = 9e-16
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + E A Y KAI E + N +
Sbjct: 141 LGNLLKALGRLEEAKACYLKAI---------------ETQPNFAVAWSNLGCVFNAQGEI 185
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A +KA+ L+PN A+ GN + + A + + L + PN+
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Score = 77.6 bits (192), Expect = 1e-15
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 15/127 (11%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
++ A Y A+ T N A +
Sbjct: 277 LANALKEKGSVAEAEDCYNTAL---------------RLCPTHADSLNNLANIKREQGNI 321
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
+ A KA+E+ P A + + + A +++ ++I P A +
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
Query: 395 TKQKLRE 401
T +++++
Sbjct: 382 TLKEMQD 388
Score = 76.8 bits (190), Expect = 2e-15
Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
E A + Y A+ + L + L L +
Sbjct: 107 LAAALVAAGDMEGAVQAYVSAL---------------QYNPDLYCVRSDLGNLLKALGRL 151
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ AK KAIE +PN A+ G + E LA F+K + +DPN A
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205
Score = 76.4 bits (189), Expect = 3e-15
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
Y++Q +LA Y++AI E + + N A L +
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAI---------------ELQPHFPDAYCNLANALKEKGSV 287
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A+D + A+ L P + + N + E A + ++K L++ P AA
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341
Score = 76.0 bits (188), Expect = 4e-15
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y ++ + + A +Y+ A+ K ++N A L+
Sbjct: 73 LGNVYKERGQLQEAIEHYRHAL---------------RLKPDFIDGYINLAAALVAAGDM 117
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ A A++ P+ GN L E A+ + K ++ PN A
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Score = 75.7 bits (187), Expect = 5e-15
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + Q + LA +++KA+ ++N L + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAV---------------TLDPNFLDAYINLGNVLKEARIF 219
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A +A+ L PN+ Y + +LA +++ +++ P+ A
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273
Score = 75.3 bits (186), Expect = 5e-15
Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + F+ A Y +A+ H N A +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRAL---------------SLSPNHAVVHGNLACVYYEQGLI 253
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A D +AIEL+P+ A+ NA + AE + L++ P + +
Sbjct: 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Score = 74.9 bits (185), Expect = 8e-15
Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 15/117 (12%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
L + +F+ + + + AI ++ L + N +
Sbjct: 36 LLLLSSIHFQCRRLDRSAHFSTLAI---------------KQNPLLAEAYSNLGNVYKER 80
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
Q + A + A+ L+P+ + A + + E A + + LQ +P+
Sbjct: 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137
Score = 73.0 bits (180), Expect = 4e-14
Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 15/115 (13%)
Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
E ++ FE A R+ + ++ T L + + ++
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLW---------------RQEPDNTGVLLLLSSIHFQCRR 48
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ AI+ P +A+ GN Y + + + A + ++ L++ P+
Sbjct: 49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103
Score = 64.5 bits (158), Expect = 2e-11
Identities = 8/67 (11%), Positives = 21/67 (31%)
Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
+ A + + A+ C + EP+N + + + + ++
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 382 DPNNKAA 388
+P A
Sbjct: 63 NPLLAEA 69
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 72.0 bits (177), Expect = 1e-15
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 17/118 (14%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
KE+G + FKQ + A Y + I + + N AM L+KL
Sbjct: 7 QKEQGNSLFKQGLYREAVHCYDQLI---------------TAQPQNPVGYSNKAMALIKL 51
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ-IDPNNKAA 388
+ A C + + E R L + A Q + +D +
Sbjct: 52 GEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDELPEGY 108
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF
domain, chaperone, peptidyl-prolyl isomerase isomerase;
1.35A {Escherichia coli}
Length = 169
Score = 73.5 bits (181), Expect = 1e-15
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 47 SAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106
+ V VH+T L DGT +S++ G+P F LG + + ++ + +K + F+
Sbjct: 26 QSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSL 85
Query: 107 KPEYAYGKQGSPPTIPPDSTLVFEVEM 133
+P+ A+G P L+
Sbjct: 86 EPDAAFG--------VPSPDLIQYFSR 104
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 74.6 bits (184), Expect = 2e-15
Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 13/128 (10%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
G ++Q ++E A + +A + + N + L++K+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEAS-------------QDTLYPERSRVFENLGLVSLQMKKPA 158
Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395
AK+ +K++ L N + E A + + Q N ++ +
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL 218
Query: 396 KQKLREQK 403
+ ++
Sbjct: 219 AKVFEDRD 226
Score = 67.7 bits (166), Expect = 6e-13
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
++ + L+ + AK KA+E++P++ A + EP+LA+++++K L
Sbjct: 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA 99
Query: 381 IDPNN 385
D N
Sbjct: 100 SDSRN 104
Score = 57.7 bits (140), Expect = 1e-09
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 17/117 (14%)
Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
+ G Y ++ E A +KA+ E + H A+ +
Sbjct: 42 QLGLGYLQRGNTEQAKVPLRKAL---------------EIDPSSADAHAALAVVFQTEME 86
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ--IDPNNKAA 388
K A ++ KA+ + N + G + E A + + Q + P
Sbjct: 87 PKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143
Score = 57.7 bits (140), Expect = 1e-09
Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 16/121 (13%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
G + K A ++K++ + + L A L K ++
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSL---------------RLNRNQPSVALEMADLLYKEREYV 192
Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395
PA+ D + N ++ + + A ++ ++ P + Q+
Sbjct: 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY-QEFQAE 251
Query: 396 K 396
K
Sbjct: 252 K 252
Score = 50.7 bits (122), Expect = 2e-07
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
H ++ L + + K + A+ + G YL E A+ +K L+
Sbjct: 9 HHSSG---LVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65
Query: 381 IDPNNKAA 388
IDP++ A
Sbjct: 66 IDPSSADA 73
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 72.1 bits (177), Expect = 3e-15
Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
D+ ++ + ++ + + E A ++ Y ++ +
Sbjct: 32 PDDMMDD---IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY---------------I 73
Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
+ A +Q + A D A L N+ F G L L P A++ F+ V+Q
Sbjct: 74 MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 382 DPNNKAAVQ 390
+ K ++
Sbjct: 134 SNDEKLKIK 142
Score = 42.1 bits (99), Expect = 6e-05
Identities = 8/59 (13%), Positives = 17/59 (28%)
Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401
+ + + + + E AE F+ + D N + L Q +
Sbjct: 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 72.5 bits (179), Expect = 4e-15
Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G TY + K++LA K E + L L +
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVA---------------EANPINFNVRFRLGVALDNLGRF 126
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A D A+ L PN K +Y + E A F+K ++D
Sbjct: 127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
Score = 71.7 bits (177), Expect = 7e-15
Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
+G ++ K ++ A ++ + L+ + +K
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVY---------------DADAFDVDVALHLGIAYVKTGAV 58
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ ++++ P+N K G Y+ + + +LA KV + +P N
Sbjct: 59 DRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112
Score = 70.6 bits (174), Expect = 2e-14
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y K + ++++ + +++++
Sbjct: 48 LGIAYVKTGAVDRGTELLERSL---------------ADAPDNVKVATVLGLTYVQVQKY 92
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A K E P N FR G A +L + A F+ L + PN
Sbjct: 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146
Score = 64.0 bits (157), Expect = 3e-12
Identities = 8/70 (11%), Positives = 23/70 (32%)
Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
+ + + K + A ++ + + + G AY+ + + ++
Sbjct: 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 379 LQIDPNNKAA 388
L P+N
Sbjct: 69 LADAPDNVKV 78
Score = 46.3 bits (111), Expect = 4e-06
Identities = 4/44 (9%), Positives = 14/44 (31%)
Query: 345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ + + + +G ++ A ++V D +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV 44
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 69.3 bits (171), Expect = 1e-14
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y+KQ ++ A Y+KA+ E N K
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKAL---------------ELDPNNAEAWYNLGNAYYKQGDY 59
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A + KA+EL+PNN +A++ GNAY + + A + +QK L++DPNN A
Sbjct: 60 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 58.6 bits (143), Expect = 8e-11
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
N K A + KA+EL+PNN +A++ GNAY + + A + +QK L+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 381 IDPNNKAA 388
+DPNN A
Sbjct: 72 LDPNNAEA 79
Score = 46.2 bits (111), Expect = 2e-06
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y+KQ ++ A Y+KA+ E N K
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKAL---------------ELDPNNAEAWYNLGNAYYKQGDY 93
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDL 365
A + KA+EL+PNN +A GNA
Sbjct: 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
Score = 40.8 bits (97), Expect = 1e-04
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
N+ +A++ GNAY + + A + +QK L++DPNN A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 69.0 bits (170), Expect = 2e-14
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y+KQ ++ A Y+KA+ E N K
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKAL---------------ELDPRSAEAWYNLGNAYYKQGDY 85
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
A + KA+EL+P + +A++ GNAY + + A + +QK L++DP +
Sbjct: 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 68.2 bits (168), Expect = 4e-14
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y+KQ ++ A Y+KA+ E N K
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKAL---------------ELDPRSAEAWYNLGNAYYKQGDY 51
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A + KA+EL+P + +A++ GNAY + + A + +QK L++DP + A
Sbjct: 52 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 57.8 bits (141), Expect = 2e-10
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
N K A + KA+EL+P + +A++ GNAY + + A + +QK L+
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 381 IDPNNKAA 388
+DP + A
Sbjct: 64 LDPRSAEA 71
Score = 38.5 bits (91), Expect = 0.001
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A++ GNAY + + A + +QK L++DP + A
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 37
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 74.1 bits (182), Expect = 2e-14
Identities = 12/137 (8%), Positives = 32/137 (23%), Gaps = 15/137 (10%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
++ + ++
Sbjct: 29 LADAELGMGDTTAGEMAVQRGL---------------ALHPGHPEAVARLGRVRWTQQRH 73
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
A +A + P + G+A D + E A + + Q+ P +L
Sbjct: 74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133
Query: 395 TKQKLREQKIKEKQVYA 411
+++L + + +
Sbjct: 134 WRRRLCDWRALDVLSAQ 150
Score = 59.5 bits (144), Expect = 1e-09
Identities = 12/104 (11%), Positives = 23/104 (22%), Gaps = 15/104 (14%)
Query: 285 FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344
+ A+ + L A L + + +
Sbjct: 5 GPRELLQLRAAV---------------RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRG 49
Query: 345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ L P + +A R G A Q+ P +
Sbjct: 50 LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93
Score = 52.2 bits (125), Expect = 2e-07
Identities = 13/71 (18%), Positives = 26/71 (36%)
Query: 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396
Q A+ P + A+ +A L + + E Q+ L + P + AV +L + +
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 397 QKLREQKIKEK 407
+
Sbjct: 68 WTQQRHAEAAV 78
Score = 46.8 bits (111), Expect = 1e-05
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 15/116 (12%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + Q + A ++A + L L QA
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQAS---------------DAAPEHPGIALWLGHALEDAGQA 107
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390
+ A +A +L P + N L + + +V AV+
Sbjct: 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 74.1 bits (181), Expect = 3e-14
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 15/133 (11%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
+ +Q K + A +YK+AI T + N L +++
Sbjct: 49 LASVLQQQGKLQEALMHYKEAI---------------RISPTFADAYSNMGNTLKEMQDV 93
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
+ A +AI++ P A + + D A ++ L++ P+ A L
Sbjct: 94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153
Query: 395 TKQKLREQKIKEK 407
Q + + ++
Sbjct: 154 CLQIVCDWTDYDE 166
Score = 65.2 bits (158), Expect = 2e-11
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
+Q E A R Y+KA+ E A H N A L + +
Sbjct: 15 LANIKREQGNIEEAVRLYRKAL---------------EVFPEFAAAHSNLASVLQQQGKL 59
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
+ A +AI + P A+ GN ++ + + A + + + +QI+P A L
Sbjct: 60 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
Query: 395 TKQKLREQK 403
++
Sbjct: 120 I---HKDSG 125
Score = 57.1 bits (137), Expect = 6e-09
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G T + + A + Y +AI + H N A
Sbjct: 83 MGNTLKEMQDVQGALQCYTRAI---------------QINPAFADAHSNLASIHKDSGNI 127
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A A++L+P+ A+ + + + ++ +K++ I +
Sbjct: 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
Score = 54.4 bits (130), Expect = 5e-08
Identities = 13/79 (16%), Positives = 29/79 (36%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
N A + + A KA+E+ P A + + + A +++ ++
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 381 IDPNNKAAVQKLTQTKQKL 399
I P A + T +++
Sbjct: 72 ISPTFADAYSNMGNTLKEM 90
Score = 39.4 bits (91), Expect = 0.002
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392
P + + N + E A + ++K L++ P AA L
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 49
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 70.1 bits (172), Expect = 5e-14
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 18/113 (15%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + ++ A + + N LK
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQD------------------PHSRICFNIGCMYTILKNM 53
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387
A+ ++I + + A+F+RG Y + +LA KD ++ L N+
Sbjct: 54 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 106
Score = 59.7 bits (145), Expect = 2e-10
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 31/128 (24%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y A + + ++I R K L + M + ++
Sbjct: 43 IGCMYTILKNMTEAEKAFTRSI---------------NRDKHLAVAYFQRGMLYYQTEKY 87
Query: 335 KPAKDQCDKAIELEPNNE----------------KAFFRRGNAYLDLNEPELAEKDFQKV 378
A +A+ N+ + + Y E + AE+
Sbjct: 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147
Query: 379 LQIDPNNK 386
+ +
Sbjct: 148 TSMKSEPR 155
Score = 53.6 bits (129), Expect = 2e-08
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382
N + K K A D + + F G Y L AEK F + + D
Sbjct: 11 NEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 383 PNNKAA 388
+ A
Sbjct: 68 KHLAVA 73
Score = 50.1 bits (120), Expect = 3e-07
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC--HLNAAMCLLKLK 332
RG Y++ +K++LA ++ K+A+ L + + + + K L AC N A K +
Sbjct: 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK-LFACEVLYNIAFMYAKKE 135
Query: 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383
+ K A++Q A ++ ++ +D A + K +P
Sbjct: 136 EWKKAEEQLALATSMKSEPR-------HSKID-----KAMECVWKQKLYEP 174
Score = 28.5 bits (64), Expect = 3.3
Identities = 4/38 (10%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ + G D + + A F + +
Sbjct: 5 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRI 39
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 72.9 bits (179), Expect = 5e-14
Identities = 10/130 (7%), Positives = 23/130 (17%), Gaps = 15/130 (11%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
+ + + +A + L
Sbjct: 347 IASHDGGKQALETVQRLLPVLCQAH---------------GLTPEQVVAIASNGGGKQAL 391
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
+ + +A L P A L + + + P A+
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 451
Query: 392 LTQTKQKLRE 401
+ L
Sbjct: 452 NGGGRPALES 461
Score = 69.4 bits (170), Expect = 7e-13
Identities = 11/114 (9%), Positives = 19/114 (16%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + + +A + L+
Sbjct: 384 NGGGKQALETVQRLLPVLCQAH---------------GLTPEQVVAIASHDGGKQALETV 428
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ +A L P A G L L N+
Sbjct: 429 QRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482
Score = 69.0 bits (169), Expect = 1e-12
Identities = 14/128 (10%), Positives = 27/128 (21%), Gaps = 15/128 (11%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
+ G + + +A + + L
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAH---------------GLTPQQVVAIASNSGGKQAL 289
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
+ + +A L P A G L + + + P A+
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 349
Query: 392 LTQTKQKL 399
KQ L
Sbjct: 350 HDGGKQAL 357
Score = 68.6 bits (168), Expect = 1e-12
Identities = 12/125 (9%), Positives = 23/125 (18%), Gaps = 15/125 (12%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
+ + +A + L+
Sbjct: 282 NSGGKQALETVQRLLPVLCQAH---------------GLTPQQVVAIASNGGGKQALETV 326
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
+ +A L P A L + + + P A+
Sbjct: 327 QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGG 386
Query: 395 TKQKL 399
KQ L
Sbjct: 387 GKQAL 391
Score = 68.2 bits (167), Expect = 2e-12
Identities = 13/128 (10%), Positives = 25/128 (19%), Gaps = 15/128 (11%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
+ + + +A + L
Sbjct: 143 IASHDGGKQALETVQALLPVLCQAH---------------GLTPEQVVAIASNGGGKQAL 187
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
+ + +A L P A G L + + + P A+
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 247
Query: 392 LTQTKQKL 399
KQ L
Sbjct: 248 NGGGKQAL 255
Score = 67.9 bits (166), Expect = 2e-12
Identities = 13/126 (10%), Positives = 24/126 (19%), Gaps = 15/126 (11%)
Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
G + + +A + L+
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAH---------------GLTPQQVVAIASNGGGKQALET 257
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
+ +A L P A L + + + P A+
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317
Query: 394 QTKQKL 399
KQ L
Sbjct: 318 GGKQAL 323
Score = 67.9 bits (166), Expect = 3e-12
Identities = 16/133 (12%), Positives = 29/133 (21%), Gaps = 15/133 (11%)
Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
EQ + G + + +A +
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAH---------------GLTPQQVVAIASNGG 216
Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
L+ + +A L P A G L + + + P
Sbjct: 217 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 276
Query: 387 AAVQKLTQTKQKL 399
A+ + KQ L
Sbjct: 277 VAIASNSGGKQAL 289
Score = 65.9 bits (161), Expect = 8e-12
Identities = 14/133 (10%), Positives = 26/133 (19%), Gaps = 15/133 (11%)
Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
EQ + + + +A +
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAH---------------GLTPQQVVAIASHDG 114
Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
L+ + +A L P A L + + + P
Sbjct: 115 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQV 174
Query: 387 AAVQKLTQTKQKL 399
A+ KQ L
Sbjct: 175 VAIASNGGGKQAL 187
Score = 50.9 bits (122), Expect = 6e-07
Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 2/74 (2%)
Query: 328 LLKLKQAKPAKDQ--CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
+ +A A + L P A L + + + P
Sbjct: 46 GVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105
Query: 386 KAAVQKLTQTKQKL 399
A+ KQ L
Sbjct: 106 VVAIASHDGGKQAL 119
Score = 36.7 bits (85), Expect = 0.016
Identities = 10/63 (15%), Positives = 17/63 (26%)
Query: 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396
A + ++L+ +RG L + P A+ K
Sbjct: 23 AGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGK 82
Query: 397 QKL 399
Q L
Sbjct: 83 QAL 85
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 64.8 bits (159), Expect = 4e-13
Identities = 13/113 (11%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + + + ++KAI + + L L L++
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAI---------------QLDPEESKYWLMKGKALYNLERY 56
Query: 335 KPAKDQCDKAIELEPN--NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
+ A D + I + + N+ + + +A + E+ + + +++ ++
Sbjct: 57 EEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 59.0 bits (144), Expect = 3e-11
Identities = 13/68 (19%), Positives = 26/68 (38%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
+ + + D +KAI+L+P K + +G A +L E A + V+
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 381 IDPNNKAA 388
+ +
Sbjct: 69 VIEDEYNK 76
Score = 43.6 bits (104), Expect = 1e-05
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
N + ++ G D + F+K +Q+DP
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 65.7 bits (160), Expect = 4e-13
Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 18/147 (12%)
Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
S + LEQ L ++ +E A ++ +
Sbjct: 17 SSDTLEQ---LYSLAFNQYQSGXYEDAHXVFQALC---------------VLDHYDSRFF 58
Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
L C + Q A ++ + F L E AE ++
Sbjct: 59 LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118
Query: 382 DPNNKAAVQKLTQTKQKLREQKIKEKQ 408
N + T+ L K+K++
Sbjct: 119 IANXPEFXELSTRVSSMLEAIKLKKEM 145
Score = 41.1 bits (96), Expect = 1e-04
Identities = 8/59 (13%), Positives = 18/59 (30%)
Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401
E+ + + + E A FQ + +D + L +Q + +
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70
>1ix5_A FKBP; ppiase, isomerase; NMR
{Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Length = 151
Score = 65.8 bits (161), Expect = 4e-13
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 21/108 (19%)
Query: 49 GCKVKVHYTGTLLDGTVFDSSKTR-------------GEPFEFDLGKGQVIKAWDRGIAT 95
G K+KV Y G L G VFD+S EP EF +G+GQ+I+ ++ +
Sbjct: 5 GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64
Query: 96 MKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISP 143
M+ + E AYG + L+ ++ +++ D P
Sbjct: 65 MEVGDEKTVKIPAEKAYG--------NRNEMLIQKIPRDAFKEADFEP 104
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 66.2 bits (162), Expect = 4e-13
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 47 SAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106
+ V + Y DG + D S P ++ G G +I + + + +
Sbjct: 4 AKDLVVSLAYQVRTEDGVLVDES-PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62
Query: 107 KPEYAYGKQGSPPTIPPDSTLVFEV 131
AYG D LV V
Sbjct: 63 GANDAYG--------QYDENLVQRV 79
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 66.5 bits (163), Expect = 8e-13
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
AM ++ + + A + A++ +P NE A+ R Y L + A++ F++ L
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 381 IDPNNKAA 388
I P++
Sbjct: 71 IKPDSAEI 78
Score = 65.7 bits (161), Expect = 2e-12
Identities = 24/156 (15%), Positives = 44/156 (28%), Gaps = 22/156 (14%)
Query: 275 RGTTYFKQDKFELACRNYKKAI---P-----------YLDFDGGFEGEQETERKKTLTAC 320
R Y + A ++++A+ P +L E K L
Sbjct: 48 RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADP 107
Query: 321 --------HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAE 372
+LN +C K Q A+ +++ +P AF + + A+
Sbjct: 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167
Query: 373 KDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ 408
F+K +A L K +
Sbjct: 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203
Score = 50.7 bits (122), Expect = 2e-07
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 16/116 (13%)
Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
+ Y + + A + + A+ + L A LK
Sbjct: 13 QLAMEYMRGQDYRQATASIEDAL---------------KSDPKNELAWLVRAEIYQYLKV 57
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLD-LNEPELAEKDFQKVLQIDPNNKAA 388
A++ +A+ ++P++ + G LN P + F K L
Sbjct: 58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY 113
Score = 43.8 bits (104), Expect = 4e-05
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 17/110 (15%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
+G KQ +F LA K+++ + A + Q
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSL---------------AAQPQFPPAFKELARTKMLAGQL 163
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
A K + + A+ ++ Q+ N
Sbjct: 164 GDADYYFKKYQSRVEVLQADDL--LLGWKIAKALGNAQAAYEYEAQLQAN 211
Score = 38.4 bits (90), Expect = 0.002
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
E + Y+ + A + L+ DP N+ A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELA 44
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 67.7 bits (166), Expect = 1e-12
Identities = 11/114 (9%), Positives = 38/114 (33%), Gaps = 6/114 (5%)
Query: 275 RGTTYFKQDKFELACRNYKKAI---PYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
++ + A + + + P ++ + + +
Sbjct: 95 LAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQ-SEDFFFAAP 151
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
+ + + A+E+ PN+ + G Y N + A + ++ +++ P++
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205
Score = 66.9 bits (164), Expect = 2e-12
Identities = 12/128 (9%), Positives = 32/128 (25%), Gaps = 15/128 (11%)
Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
E G + K A ++ + + + + ++
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVC---------------QAAPEREEAWRSLGLTQAENEK 70
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
A + A L+P + ++ + + A + L P +
Sbjct: 71 DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130
Query: 394 QTKQKLRE 401
Q + +
Sbjct: 131 QADVDIDD 138
Score = 65.4 bits (160), Expect = 6e-12
Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
+ +++ A+ E H + +
Sbjct: 144 EDFFFAAPNEYRECRTLLHAAL---------------EMNPNDAQLHASLGVLYNLSNNY 188
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
A +A+EL P++ + + + G + N P+ A + + L I+P
Sbjct: 189 DSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
Score = 61.9 bits (151), Expect = 1e-10
Identities = 15/114 (13%), Positives = 40/114 (35%), Gaps = 15/114 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y + ++ A N ++A+ E + L +
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAV---------------ELRPDDAQLWNKLGATLANGNRP 222
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+ A D ++A+++ P + + +Y ++++ +LA K + + +
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276
Score = 59.6 bits (145), Expect = 6e-10
Identities = 13/68 (19%), Positives = 24/68 (35%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
+ + +LKL A + + P E+A+ G + + LA
Sbjct: 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83
Query: 381 IDPNNKAA 388
+DP + A
Sbjct: 84 LDPKDIAV 91
Score = 54.6 bits (132), Expect = 3e-08
Identities = 18/126 (14%), Positives = 29/126 (23%), Gaps = 30/126 (23%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G T + +K LA A A H A+ A
Sbjct: 61 LGLTQAENEKDGLAIIALNHAR---------------MLDPKDIAVHAALAVSHTNEHNA 105
Query: 335 KPAKDQCDKAIELEPNNEKA---------------FFRRGNAYLDLNEPELAEKDFQKVL 379
A + +P E+ + NE L
Sbjct: 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165
Query: 380 QIDPNN 385
+++PN+
Sbjct: 166 EMNPND 171
Score = 47.3 bits (113), Expect = 5e-06
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 27/119 (22%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G T ++ + A Y +A+ + N A+ + Q
Sbjct: 212 LGATLANGNRPQEALDAYNRAL---------------DINPGYVRVMYNMAVSYSNMSQY 256
Query: 335 KPAKDQCDKAIELEPNNEKAFFRR------------GNAYLDLNEPELAEKDFQKVLQI 381
A Q +AI ++ +N P+L E + + ++
Sbjct: 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315
Score = 43.4 bits (103), Expect = 1e-04
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 339 DQCDKAIELEPNN----EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
Q + E NN + G + L L A F+ V Q P + A
Sbjct: 4 LQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA 57
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 65.1 bits (159), Expect = 2e-12
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 47 SAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106
+ V + Y DG + D S P ++ G G +I + + + +
Sbjct: 4 AKDLVVSLAYQVRTEDGVLVDES-PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62
Query: 107 KPEYAYGKQGSPPTIPPDSTLVFEVE 132
AYG D LV V
Sbjct: 63 GANDAYG--------QYDENLVQRVP 80
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 65.2 bits (160), Expect = 2e-12
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 22/113 (19%)
Query: 275 RGTTYFKQDKFELACRNYKKAI---PYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
RG Y + + A + K+A+ + A L +
Sbjct: 124 RGLVYALLGERDKAEASLKQALALEDTPE-------------------IRSALAELYLSM 164
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
+ A Q KA+E P + R +A L + E A + +
Sbjct: 165 GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
Score = 64.1 bits (157), Expect = 6e-12
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 10/116 (8%)
Query: 275 RGTTYFKQDKFELACRNYKKAI---PYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
T K A N K + P + GG+ + A + A
Sbjct: 45 LARTQLKLGLVNPALENGKTLVARTP--RYLGGYMV-----LSEAYVALYRQAEDRERGK 97
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387
+ A A + P +RG Y L E + AE ++ L ++ +
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI 153
Score = 63.3 bits (155), Expect = 9e-12
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 26/125 (20%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + +++ A +++A+ + A LKL
Sbjct: 11 LGVQLYALGRYDAALTLFERAL---------------KENPQDPEALYWLARTQLKLGLV 55
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEP-----------ELAEKDFQKVLQIDP 383
PA + + P + AY+ L E A + +++P
Sbjct: 56 NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115
Query: 384 NNKAA 388
Sbjct: 116 RYAPL 120
Score = 61.8 bits (151), Expect = 4e-11
Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 16/119 (13%)
Query: 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329
L ++ + E A K A HL +
Sbjct: 85 ALYRQAEDRERGKGYLEQALSVLKDAE---------------RVNPRYAPLHLQRGLVYA 129
Query: 330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
L + A+ +A+ LE E YL + + A + K L+ P +
Sbjct: 130 LLGERDKAEASLKQALALEDTPE-IRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187
Score = 59.9 bits (146), Expect = 1e-10
Identities = 11/68 (16%), Positives = 25/68 (36%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
L + L L + A ++A++ P + +A + L L A ++ + ++
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 381 IDPNNKAA 388
P
Sbjct: 68 RTPRYLGG 75
Score = 40.2 bits (95), Expect = 6e-04
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
E+ R G L + A F++ L+ +P + A
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA 41
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 68.1 bits (166), Expect = 2e-12
Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 27/185 (14%)
Query: 211 KYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGK 270
+ S L + H+ S G ++G S + E+ K Q +++
Sbjct: 7 HHHHSSGLVPRGSHMASMTGGQQMGRGSM-------MADEEEEAKHVLQ-KLQGLVDRLY 58
Query: 271 LLKERGTTYFKQDKFELACRN-------YKKAIPYLDFDGGFEGEQETERKKTLTACHLN 323
++ +YF+ E A R +K + ++ + + +
Sbjct: 59 CFRD---SYFETHSVEDAGRKQQDVQEEMEKTLQQME--------EVLGSAQVEAQALML 107
Query: 324 AAMCLLKL-KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382
L + A+ KA++LEP +A+ + G Y + A F L
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167
Query: 383 PNNKA 387
N +
Sbjct: 168 KNKVS 172
Score = 63.5 bits (154), Expect = 5e-11
Identities = 25/176 (14%), Positives = 49/176 (27%), Gaps = 15/176 (8%)
Query: 269 GKLLKE--RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
+L++ + + R K A+ +D +G + + N
Sbjct: 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-QMDVL---DGRSWYILGNAYLSLYFNTGQ 232
Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
+QA A Q +K +N R + A + F + +DP
Sbjct: 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292
Query: 387 AAVQKLTQTKQKLRE--------QKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPD 434
Q+ Q + L K K K+ +M + + +
Sbjct: 293 EPQQREQQLLEFLSRLTSLLESKGKTKPKK-LQSMLGSLRPAHLGPCGDGRYQSAS 347
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 67.0 bits (164), Expect = 3e-12
Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT 318
Q + L E G ++ A ++ A+ ++
Sbjct: 54 QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV---------------QQDPKHM 98
Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
+ +Q A + +EL+P+N+ A ++ + + A + +
Sbjct: 99 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158
Query: 379 LQIDPNNKAAVQKLTQT 395
L+ P V +
Sbjct: 159 LRYTPAYAHLVTPAEEG 175
Score = 66.2 bits (162), Expect = 5e-12
Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 16/143 (11%)
Query: 251 FEKIKDTWQLNSDEKLEQGKLLKERGTTY-----FKQDKFELACRNYKKAIPYLDFDGGF 305
FE+ K + + D + L+E + D +L Y K +
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQF------- 55
Query: 306 EGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL 365
E E + L+ A + A++ +P + +A+ G +
Sbjct: 56 ----EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN 111
Query: 366 NEPELAEKDFQKVLQIDPNNKAA 388
+ LA ++ L++ P+N+ A
Sbjct: 112 EQELLAISALRRCLELKPDNQTA 134
Score = 61.2 bits (149), Expect = 2e-10
Identities = 15/125 (12%), Positives = 41/125 (32%), Gaps = 15/125 (12%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + +++ A + A+ + L Q+
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAAL---------------SVRPNDYLLWNKLGATLANGNQS 267
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
+ A +A+EL+P ++ + G + ++L A + F + L + ++ +
Sbjct: 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327
Query: 395 TKQKL 399
+ +
Sbjct: 328 MSENI 332
Score = 58.9 bits (143), Expect = 1e-09
Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 22/124 (17%)
Query: 269 GKLLKERGTTYFKQDKFELACRNYKKAI---P-YLDFDGGFEGEQETERKKTLTACHLNA 324
G + G+ F + A+ P +D D
Sbjct: 182 GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPD-----------------VQCGL 223
Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
+ + A D A+ + PN+ + + G + N+ E A +++ L++ P
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283
Query: 385 NKAA 388
+
Sbjct: 284 YIRS 287
Score = 51.6 bits (124), Expect = 3e-07
Identities = 29/229 (12%), Positives = 61/229 (26%), Gaps = 58/229 (25%)
Query: 195 SEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKI 254
S+ D + L+ LE+ ++ H W +D +K Y N +
Sbjct: 12 SDVDFWDKLQAELEEMAKRDAE------AHPWLSDYDDLTSATYDK--GYQFEEENPLRD 63
Query: 255 KDTWQLNSDEKLEQGKL--------------------LKERGTTYFKQDKFELACRNYKK 294
+L++G L + GTT + ++ LA ++
Sbjct: 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123
Query: 295 AIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA 354
+ E K + A+ + A + + P
Sbjct: 124 CL---------------ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 168
Query: 355 F---------------FRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
R + L + ++ F +++DP +
Sbjct: 169 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217
Score = 49.3 bits (118), Expect = 1e-06
Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 26/121 (21%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G T ++ E A Y++A+ E + N + + L
Sbjct: 257 LGATLANGNQSEEAVAAYRRAL---------------ELQPGYIRSRYNLGISCINLGAH 301
Query: 335 KPAKDQCDKAIELEPNNEKAFFRR-----------GNAYLDLNEPELAEKDFQKVLQIDP 383
+ A + +A+ ++ + A L + + + L
Sbjct: 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361
Query: 384 N 384
Sbjct: 362 T 362
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein,
rotamase; NMR {Helicobacter pylori}
Length = 151
Score = 63.0 bits (154), Expect = 4e-12
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 52 VKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYA 111
+ Y ++ S EP EF +G Q+I ++ + + E PE A
Sbjct: 13 ALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEA 72
Query: 112 YGKQGSPPTIPPDSTLVFEVEMISWEAEDISP 143
YG +S+ + EV +E ++
Sbjct: 73 YG--------VYESSYLQEVPRDQFEGIELEK 96
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 66.2 bits (161), Expect = 1e-11
Identities = 13/128 (10%), Positives = 27/128 (21%), Gaps = 15/128 (11%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
+ + + +A + L
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAH---------------GLPPDQVVAIASNIGGKQAL 273
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
+ + +A L P+ A G L + + + P+ A+
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333
Query: 392 LTQTKQKL 399
KQ L
Sbjct: 334 HDGGKQAL 341
Score = 63.9 bits (155), Expect = 6e-11
Identities = 15/135 (11%), Positives = 29/135 (21%), Gaps = 15/135 (11%)
Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
+Q + G + + +A G +Q +
Sbjct: 527 TPDQVVAIASNGGGKQALETVQRLLPVLCQAH-------GLTPDQVV--------AIASN 571
Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
L+ + +A L A L + + + P
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Query: 385 NKAAVQKLTQTKQKL 399
A+ KQ L
Sbjct: 632 QVVAIASHDGGKQAL 646
Score = 63.1 bits (153), Expect = 1e-10
Identities = 18/166 (10%), Positives = 37/166 (22%), Gaps = 25/166 (15%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
+ G + + +A + L
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAH---------------GLTPDQVVAIASHDGGKQAL 341
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN------N 385
+ + +A L P+ A G L + + + P+ +
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 401
Query: 386 KAAVQKLTQTKQKL----REQKIKEKQVYANMFDKFAKHDTEKEEE 427
Q L ++ L + + QV A K E +
Sbjct: 402 NGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQR 447
Score = 63.1 bits (153), Expect = 1e-10
Identities = 13/135 (9%), Positives = 26/135 (19%), Gaps = 15/135 (11%)
Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
Q + + + +A +
Sbjct: 595 TQVQVVAIASNIGGKQALETVQRLLPVLCQAH---------------GLTPAQVVAIASH 639
Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
L+ + +A L P+ A G L + + +
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699
Query: 385 NKAAVQKLTQTKQKL 399
A+ KQ L
Sbjct: 700 QVVAIASNNGGKQAL 714
Score = 62.7 bits (152), Expect = 2e-10
Identities = 13/133 (9%), Positives = 28/133 (21%), Gaps = 15/133 (11%)
Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
+Q + + + +A +
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAH---------------GLTPDQVVAIASHGG 302
Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
L+ + +A L P+ A L + + + P+
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQV 362
Query: 387 AAVQKLTQTKQKL 399
A+ KQ L
Sbjct: 363 VAIASNGGGKQAL 375
Score = 62.0 bits (150), Expect = 2e-10
Identities = 14/128 (10%), Positives = 28/128 (21%), Gaps = 15/128 (11%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
+ G + + +A + + L
Sbjct: 670 IASNGGGKQALETVQRLLPVLCQAH---------------GLTQEQVVAIASNNGGKQAL 714
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
+ + +A L P+ A G L + + + P A+
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 774
Query: 392 LTQTKQKL 399
KQ L
Sbjct: 775 NIGGKQAL 782
Score = 61.2 bits (148), Expect = 5e-10
Identities = 12/133 (9%), Positives = 25/133 (18%), Gaps = 15/133 (11%)
Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
Q + + + +A +
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAH---------------GLTPDQVVAIASNGG 675
Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
L+ + +A L A L + + + P+
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQV 735
Query: 387 AAVQKLTQTKQKL 399
A+ KQ L
Sbjct: 736 VAIASNGGGKQAL 748
Score = 60.8 bits (147), Expect = 6e-10
Identities = 13/128 (10%), Positives = 26/128 (20%), Gaps = 15/128 (11%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
+ + + +A + L
Sbjct: 466 IASHDGGKQALETVQQLLPVLCQAH---------------GLTPDQVVAIASNIGGKQAL 510
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
+ +A L P+ A G L + + + P+ A+
Sbjct: 511 ATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 570
Query: 392 LTQTKQKL 399
KQ L
Sbjct: 571 NGGGKQAL 578
Score = 58.9 bits (142), Expect = 2e-09
Identities = 13/135 (9%), Positives = 26/135 (19%), Gaps = 15/135 (11%)
Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
+Q + + +A +
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAH---------------GLTPDQVVAIASN 537
Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
L+ + +A L P+ A G L + + +
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597
Query: 385 NKAAVQKLTQTKQKL 399
A+ KQ L
Sbjct: 598 QVVAIASNIGGKQAL 612
Score = 56.6 bits (136), Expect = 1e-08
Identities = 11/79 (13%), Positives = 20/79 (25%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
+ L+ + +A L P A L + +
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 381 IDPNNKAAVQKLTQTKQKL 399
+ P+ A+ KQ L
Sbjct: 255 LPPDQVVAIASNIGGKQAL 273
Score = 55.8 bits (134), Expect = 2e-08
Identities = 17/153 (11%), Positives = 34/153 (22%), Gaps = 18/153 (11%)
Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAI----PYLDFDGGFEGEQETERKKTLTAC 320
+Q + G + + +A + G+Q E + L
Sbjct: 358 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPV 417
Query: 321 --------------HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN 366
+ L+ + + L P A L
Sbjct: 418 LCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALE 477
Query: 367 EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399
+ + + P+ A+ KQ L
Sbjct: 478 TVQQLLPVLCQAHGLTPDQVVAIASNIGGKQAL 510
Score = 45.8 bits (108), Expect = 3e-05
Identities = 9/58 (15%), Positives = 14/58 (24%)
Query: 342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399
+ L P A L + + + P A+ KQ L
Sbjct: 182 GAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL 239
Score = 44.6 bits (105), Expect = 6e-05
Identities = 11/128 (8%), Positives = 23/128 (17%), Gaps = 15/128 (11%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
+ + + +A + L
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAH---------------GLTPDQVVAIASNGGGKQAL 748
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
+ + +A L P A L + + + A+
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIAS 808
Query: 392 LTQTKQKL 399
KQ L
Sbjct: 809 NIGGKQAL 816
Score = 43.1 bits (101), Expect = 2e-04
Identities = 11/123 (8%), Positives = 28/123 (22%), Gaps = 8/123 (6%)
Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
+ + A ++ +P L G +Q + L+
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQ--------VVAIASNIGGKQALET 852
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
+ + L P+ A L + + + + A+
Sbjct: 853 VQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNG 912
Query: 394 QTK 396
+
Sbjct: 913 GKQ 915
Score = 39.2 bits (91), Expect = 0.003
Identities = 22/173 (12%), Positives = 46/173 (26%), Gaps = 11/173 (6%)
Query: 231 NDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACR 290
G+ ++ + + ++ +L + G L ++ + A
Sbjct: 827 CQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHG-LTPDQVVAIASNIGGKQALE 885
Query: 291 NYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350
++ +P L D G +Q A L+ + + L P+
Sbjct: 886 TVQRLLPVLCQDHGLTLDQVVAIASN----GGKQA-----LETVQRLLPVLCQDHGLTPD 936
Query: 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK 403
A L + + + PN A+ KQ L
Sbjct: 937 QVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIAS-NGGKQALESIV 988
Score = 38.1 bits (88), Expect = 0.006
Identities = 14/122 (11%), Positives = 29/122 (23%), Gaps = 8/122 (6%)
Query: 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPA 337
+ A ++ +P L Q+ + L+ +
Sbjct: 771 AIASNIGGKQALETVQRLLPVLC--------QDHGLTLAQVVAIASNIGGKQALETVQRL 822
Query: 338 KDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397
+A L + A L + + + P+ A+ KQ
Sbjct: 823 LPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQ 882
Query: 398 KL 399
L
Sbjct: 883 AL 884
Score = 35.8 bits (82), Expect = 0.038
Identities = 21/181 (11%), Positives = 39/181 (21%), Gaps = 16/181 (8%)
Query: 220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTY 279
QP D + ++ I + + ++
Sbjct: 40 AQPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQ--- 96
Query: 280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT-ACHLNAAMCLLKLKQAKPAK 338
Y+ I L E + + + A L L A
Sbjct: 97 -HPAALGTVAVTYQHIITALP---------EATHEDIVGVGKQWSGARALEAL--LTDAG 144
Query: 339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398
+ ++L+ +RG L + P A+ KQ
Sbjct: 145 ELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQA 204
Query: 399 L 399
L
Sbjct: 205 L 205
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 65.1 bits (159), Expect = 1e-11
Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 15/128 (11%)
Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
E G K+ + + AI + + + +
Sbjct: 70 EEGLKRLKEGDLPVTILFMEAAI---------------LQDPGDAEAWQFLGITQAENEN 114
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
+ A + +EL+PNN KA +Y + + + A + + ++ +P K V+
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174
Query: 394 QTKQKLRE 401
+ R
Sbjct: 175 GSPGLTRR 182
Score = 63.2 bits (154), Expect = 5e-11
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 21/139 (15%)
Query: 252 EKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAI--PYLDFDGGFEGEQ 309
+ D Q +E + + Q + + Y P+ D+ G
Sbjct: 16 TEFWDKMQAEWEEMARRNWI--SENQEAQNQVTVSASEKGYYFHTENPFKDWPG------ 67
Query: 310 ETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPE 369
+ LK + AI +P + +A+ G + +
Sbjct: 68 -----------AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQ 116
Query: 370 LAEKDFQKVLQIDPNNKAA 388
A Q+ L++ PNN A
Sbjct: 117 AAIVALQRCLELQPNNLKA 135
Score = 61.2 bits (149), Expect = 2e-10
Identities = 16/149 (10%), Positives = 45/149 (30%), Gaps = 15/149 (10%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G + +F A + A+ + + L ++
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAAL---------------TVRPEDYSLWNRLGATLANGDRS 263
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
+ A + +A+E++P ++ + G + ++L A +F L + ++ Q
Sbjct: 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHP 323
Query: 395 TKQKLREQKIKEKQVYANMFDKFAKHDTE 423
++ + + F +
Sbjct: 324 AISGNIWAALRIALSLMDQPELFQAANLG 352
Score = 60.1 bits (146), Expect = 5e-10
Identities = 16/145 (11%), Positives = 34/145 (23%), Gaps = 31/145 (21%)
Query: 275 RGTTYFKQDKFELACRNYKKAI-------------PYLDFDGGFEGEQETERKKTLTA-- 319
+Y + AC K I + +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198
Query: 320 ----------------CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYL 363
+ + A D + A+ + P + + R G
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258
Query: 364 DLNEPELAEKDFQKVLQIDPNNKAA 388
+ + E A + + + L+I P +
Sbjct: 259 NGDRSEEAVEAYTRALEIQPGFIRS 283
Score = 54.7 bits (132), Expect = 2e-08
Identities = 12/118 (10%), Positives = 31/118 (26%), Gaps = 16/118 (13%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G T + + + A ++ + E + + A+
Sbjct: 105 LGITQAENENEQAAIVALQRCL---------------ELQPNNLKALMALAVSYTNTSHQ 149
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-NKAAVQK 391
+ A + I+ P + + + + D + + +AA Q
Sbjct: 150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207
Score = 46.6 bits (111), Expect = 1e-05
Identities = 15/111 (13%), Positives = 28/111 (25%), Gaps = 15/111 (13%)
Query: 282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQC 341
+FE A + +F + E E + + Q +
Sbjct: 2 AMEFERAKAAVESDT---EFWDKMQAEWEEM--------ARRNWISENQEAQNQVTVSAS 50
Query: 342 DKAIELEPNNE----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+K N F G L + + + + DP + A
Sbjct: 51 EKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEA 101
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 59.7 bits (145), Expect = 2e-11
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
+ +Q A A++ +P A+ G + A + ++ L
Sbjct: 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 381 IDPNN--KAAVQKLTQTKQKLREQ 402
+ + V++L ++L +
Sbjct: 82 AAQSRGDQQVVKELQVFLRRLARE 105
Score = 54.6 bits (132), Expect = 1e-09
Identities = 12/65 (18%), Positives = 24/65 (36%)
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
+ ++ + + +N F G Y + + + A + L DP A + L +
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 395 TKQKL 399
T Q
Sbjct: 62 TLQGQ 66
Score = 40.0 bits (94), Expect = 2e-04
Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 15/77 (19%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G TY + ++F+ A + + A+ + T + L
Sbjct: 25 LGKTYAEHEQFDAALPHLRAAL---------------DFDPTYSVAWKWLGKTLQGQGDR 69
Query: 335 KPAKDQCDKAIELEPNN 351
A+ + + +
Sbjct: 70 AGARQAWESGLAAAQSR 86
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 61.0 bits (148), Expect = 3e-11
Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 15/138 (10%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
G Y Q+ + + Y++A+ Q L A
Sbjct: 51 GEYYLWQNDYSNSLLAYRQAL------------QLRGENAELYAALATVLYYQASQHMTA 98
Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAVQKL 392
+ DKA+ L+ N A + A + +QKV+ ++ V+ +
Sbjct: 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158
Query: 393 TQTKQKLREQKIKEKQVY 410
K R ++ +
Sbjct: 159 NMAKLLQRRSDLEHHHHH 176
Score = 46.0 bits (109), Expect = 5e-06
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
I P N + + G YL N+ + +++ LQ+ N
Sbjct: 35 DKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 58.9 bits (143), Expect = 3e-11
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNN-EKAFFRRGNAYLDLNEPELAEKDFQKVL 379
L L+ + A ++ ++ EP ++A++ GNAY L + + A ++Q +
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
Query: 380 QIDPNNKAA 388
+++P++ A
Sbjct: 63 ELNPDSPAL 71
Score = 33.9 bits (78), Expect = 0.017
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 21/95 (22%)
Query: 264 EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLN 323
++L+ K L +G E A + ++ + + G E +
Sbjct: 2 DQLKTIKELINQG-------DIENALQALEEFLQ-TEPVGKDE-------------AYYL 40
Query: 324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR 358
KL + A + AIEL P++ R+
Sbjct: 41 MGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein,
chaperone; 1.95A {Methanocaldococcus jannaschii} PDB:
3pra_A
Length = 157
Score = 59.7 bits (145), Expect = 7e-11
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 22/108 (20%)
Query: 49 GCKVKVHYTGTLLDGTVFDSSKTR-------------GEPFEFDLGKGQVIKAWDRGIAT 95
G VK+ Y G + DG +FD++ P G+GQV+ D I
Sbjct: 5 GKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63
Query: 96 MKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISP 143
M E PE A+G D + + + + + I P
Sbjct: 64 MDVGEEREVVLPPEKAFG--------KRDPSKIKLIPLSEFTKRGIKP 103
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 56.6 bits (138), Expect = 2e-10
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
N K A + KA+EL+PNN +A++ GNAY + + A + +QK L+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 381 IDPNNKAA 388
+DPNN A
Sbjct: 72 LDPNNAEA 79
Score = 45.1 bits (108), Expect = 2e-06
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G Y+KQ ++ A Y+KA+ E N K
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKAL---------------ELDPNNAEAWYNLGNAYYKQGDY 59
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDL 365
A + KA+EL+PNN +A GNA
Sbjct: 60 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90
Score = 40.5 bits (96), Expect = 8e-05
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
N+ +A++ GNAY + + A + +QK L++DPNN A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 56.5 bits (137), Expect = 2e-10
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
A LK A A ++ +E +P+ ++ G Y L+ + A + + ++
Sbjct: 10 RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69
Query: 381 IDPN--NKAAVQKLTQTKQKL 399
+ + + +L K K
Sbjct: 70 VAREEGTQKDLSELQDAKLKA 90
Score = 44.6 bits (106), Expect = 3e-06
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+P + + +L + A F+++++ DP+
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT 43
Score = 43.4 bits (103), Expect = 1e-05
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 17/92 (18%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
+ K D A +++ + E + + +L +
Sbjct: 14 AQEHLKHDNASRALALFEELV---------------ETDPDYVGTYYHLGKLYERLDRTD 58
Query: 336 PAKDQCDKAIELEPN--NEKAFFRRGNAYLDL 365
A D + IE+ +K +A L
Sbjct: 59 DAIDTYAQGIEVAREEGTQKDLSELQDAKLKA 90
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 58.0 bits (141), Expect = 2e-10
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 14/85 (16%)
Query: 47 SAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106
V + YT + +G V D + G +I + + ++ E
Sbjct: 4 GQDKVVTIRYTLQV-EGEVLDQG-----ELSYLHGHRNLIPGLEEALEGREEGEAFQAHV 57
Query: 107 KPEYAYGKQGSPPTIPPDSTLVFEV 131
E AYG P D V V
Sbjct: 58 PAEKAYG--------PHDPEGVQVV 74
Score = 31.5 bits (72), Expect = 0.30
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 164 KDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQP 222
V I + EG+V +G S++ G + + LE+ALE + E + V
Sbjct: 4 GQDKVVTIRYTLQVEGEVLDQGELSYLHGHRN---LIPGLEEALEGREEGEAFQAHVPA 59
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 56.7 bits (137), Expect = 3e-10
Identities = 14/68 (20%), Positives = 25/68 (36%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
+ + +LKL A + + EP E+A+ G + + LA
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 381 IDPNNKAA 388
+DP + A
Sbjct: 80 LDPKDIAV 87
Score = 56.3 bits (136), Expect = 4e-10
Identities = 11/111 (9%), Positives = 30/111 (27%), Gaps = 15/111 (13%)
Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
E G + K A ++ +++ + + + ++
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVC---------------QKEPEREEAWRSLGLTQAENEK 66
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
A + A L+P + ++ + + A + L P
Sbjct: 67 DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
Score = 32.4 bits (74), Expect = 0.10
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 348 EPNN----EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392
E NN + G + L L A F+ V Q +P + A + L
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL 57
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 57.6 bits (138), Expect = 4e-10
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 14/152 (9%)
Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
++ L +++ A N ++A+ + E+ + CH
Sbjct: 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAM---EISHTMPPEEAFDHAGFDAFCHAGL 63
Query: 325 AMCLLKLKQAKPAKDQCDKAI-------ELEPNNEKAF----FRRGNAYLDLNEPELAEK 373
A L L+ A DKA+ EL + K + + R A L A
Sbjct: 64 AEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123
Query: 374 DFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK 405
+F+KV+++ K + + ++ +
Sbjct: 124 EFKKVVEMIEERKGETPGKERMMEVAIDRIAQ 155
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 59.6 bits (144), Expect = 1e-09
Identities = 36/215 (16%), Positives = 64/215 (29%), Gaps = 37/215 (17%)
Query: 202 NLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK----IKDT 257
E ALE + E+ L N Y M +
Sbjct: 66 QNEAALECLRKAEELIQQEHADQA----EIRSLVTWGNYAWVY-YHMGRLSDVQIYVDKV 120
Query: 258 WQLN----SDEKLEQGKLLKERGTTYFK--QDKFELACRNYKKAIPYLDFDGGFEGEQET 311
+ S ++E +L E G T K ++ E A ++KA+
Sbjct: 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL--------------- 165
Query: 312 ERKKTLTACHLN---AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL--- 365
E+K A+ L ++ A D +AI L P+N+ +
Sbjct: 166 EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREE 225
Query: 366 -NEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399
E EK ++ L+ P ++ + ++
Sbjct: 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260
Score = 58.8 bits (142), Expect = 2e-09
Identities = 29/188 (15%), Positives = 55/188 (29%), Gaps = 19/188 (10%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAI---PYLDFDGGFEGEQETERKKTLTACHLNAAMCL 328
L+ Y ++D+ + A KKA+ P + G + + N
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309
Query: 329 LKLKQAKP-AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387
KL + A KA E N + + + ++ E AE FQK + A
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369
Query: 388 AVQ------KLTQTKQKLREQ---------KIKEKQVYANMFDKFAKHDTEKEEEEKKKE 432
+ K ++ KI +K + + + +
Sbjct: 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGAD 429
Query: 433 PDVMKTLG 440
+ + L
Sbjct: 430 SEALHVLA 437
Score = 56.9 bits (137), Expect = 7e-09
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 5/123 (4%)
Query: 291 NYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP--AKDQCDKAIELE 348
Y+D + + + LK + AK +KA+E +
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168
Query: 349 PNNEKAFFRRGNAYL---DLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK 405
P N + A + + A ++ ++++P+N+ L K+RE+ +
Sbjct: 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228
Query: 406 EKQ 408
E +
Sbjct: 229 EGE 231
Score = 52.2 bits (125), Expect = 2e-07
Identities = 14/130 (10%), Positives = 39/130 (30%), Gaps = 21/130 (16%)
Query: 276 GTTYFKQDKFELACRNYKKAI---------PYLDFDGGFEGEQETERKKTLTACHLNAAM 326
+ + D++E A ++K L G + + + +
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG-- 398
Query: 327 CLLKLKQAKPAKDQC--------DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
+K+ Q K++ + + +A + + A++D ++
Sbjct: 399 --VKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456
Query: 379 LQIDPNNKAA 388
L+ +A
Sbjct: 457 LESGSLIPSA 466
Score = 49.6 bits (118), Expect = 1e-06
Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 16/142 (11%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
+ + E A +KA + + E + + N A + +
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELI------QQEHADQAEIRSLVTWGNYAWVYYHMGRLS 111
Query: 336 PAKDQCDKAIELEPNNEKAF--------FRRGNAYLDL--NEPELAEKDFQKVLQIDPNN 385
+ DK + + G L N+ E A+ F+K L+ P N
Sbjct: 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171
Query: 386 KAAVQKLTQTKQKLREQKIKEK 407
L +L +
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQN 193
Score = 30.3 bits (68), Expect = 1.7
Identities = 12/126 (9%), Positives = 37/126 (29%), Gaps = 13/126 (10%)
Query: 248 MNNFEKIKDTWQ----LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAI---PYLD 300
+ +E+ + +Q +Q L+ ++ + A ++ + +
Sbjct: 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406
Query: 301 FDGGFEGEQETERKKTLTA------CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA 354
+ + + K L+ A ++ + A + ++ +E A
Sbjct: 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466
Query: 355 FFRRGN 360
G
Sbjct: 467 SSWNGE 472
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A
{Methanocaldococcus jannaschii} PDB: 3prd_A
Length = 231
Score = 56.7 bits (137), Expect = 2e-09
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 22/108 (20%)
Query: 49 GCKVKVHYTGTLLDGTVFDSSKTR-------------GEPFEFDLGKGQVIKAWDRGIAT 95
G VK+ Y G + DG +FD++ P G+GQV+ D I
Sbjct: 5 GKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63
Query: 96 MKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISP 143
M E PE A+G D + + + + + I P
Sbjct: 64 MDVGEEREVVLPPEKAFG--------KRDPSKIKLIPLSEFTKRGIKP 103
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 55.1 bits (132), Expect = 1e-08
Identities = 26/160 (16%), Positives = 44/160 (27%), Gaps = 17/160 (10%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
K D+ +LA + KK + T L A L
Sbjct: 136 TVQILLKLDRLDLARKELKKMQDQDEDA---------------TLTQLATAWVSLAAGGE 180
Query: 335 KP--AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392
K A + + + ++ E AE Q+ L D + + L
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240
Query: 393 TQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKE 432
Q L + + + + D H KE K+ +
Sbjct: 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEND 280
Score = 44.0 bits (103), Expect = 5e-05
Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 17/183 (9%)
Query: 252 EKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIP-----------YLD 300
+ + + + +E+ L Y Q K+ + K + YL
Sbjct: 20 NEAQRVKPSSPERDVERDVFL---YRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLA 76
Query: 301 FDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL--EPNNEKAFFRR 358
+ ++ + + LL D A+ + ++ +
Sbjct: 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMT 136
Query: 359 GNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE-KQVYANMFDKF 417
L L+ +LA K+ +K+ D + +K+++ ++ M DK
Sbjct: 137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196
Query: 418 AKH 420
+
Sbjct: 197 SPT 199
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 47.4 bits (113), Expect = 5e-07
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 284 KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK 343
A Y+KAI G +G+ L C+L L + + A+
Sbjct: 5 LEAQAVPYYEKAI-----ASGLQGKD-------LAECYLGLGSTFRTLGEYRKAEAVLAN 52
Query: 344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387
++ PN++ +L E + K++ +++
Sbjct: 53 GVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
Score = 42.8 bits (101), Expect = 2e-05
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 342 DKAIEL---EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+KAI + + + G+ + L E AE ++ PN++A
Sbjct: 14 EKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Score = 32.8 bits (75), Expect = 0.063
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 15/78 (19%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
G+T+ ++ A + ++ A + AM L L +
Sbjct: 33 LGSTFRTLGEYRKAEAVLANGV---------------KQFPNHQALRVFYAMVLYNLGRY 77
Query: 335 KPAKDQCDKAIELEPNNE 352
+ + K I ++E
Sbjct: 78 EQGVELLLKIIAETSDDE 95
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 49.8 bits (119), Expect = 9e-07
Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 15/149 (10%)
Query: 244 YTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG 303
Y + + + + SD+ +E+ + + Y+ + ++ + +A+
Sbjct: 117 YVEAIGYYREAEKELPFVSDD-IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY---- 171
Query: 304 GFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL--EPNNEK----AFFR 357
+ A K A + A+EL + N++ +
Sbjct: 172 ----QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227
Query: 358 RGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
N+Y + ++A + FQK ++
Sbjct: 228 IANSYDRSGDDQMAVEHFQKAAKVSREKV 256
Score = 46.7 bits (111), Expect = 9e-06
Identities = 19/186 (10%), Positives = 54/186 (29%), Gaps = 22/186 (11%)
Query: 201 ENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQL 260
+A ++ + + + + K+ ++M + + D +Q
Sbjct: 122 GYYREAEKELPF--------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN 173
Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC 320
+ + + L Y ++ A + + A+ + + + +
Sbjct: 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA---------MDIQNDRFIAIS 224
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE-----KAFFRRGNAYLDLNEPELAEKDF 375
LN A + + A + KA ++ K F + + A +
Sbjct: 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFI 284
Query: 376 QKVLQI 381
++ L
Sbjct: 285 EEGLDH 290
Score = 41.3 bits (97), Expect = 5e-04
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 16/117 (13%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
L RG F Q ++ A Y++A L F + E H A +
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF---------HFKVAEAYYHM 154
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRR-------GNAYLDLNEPELAEKDFQKVLQI 381
KQ + +A+++ N+ R Y D + A + L++
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211
Score = 38.6 bits (90), Expect = 0.003
Identities = 11/112 (9%), Positives = 29/112 (25%), Gaps = 20/112 (17%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
T K + + A + ++ + + + + L + +
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDH--------------ITARSHKFYKELFLFLQAVYKET 313
Query: 336 PAKDQCDKAIE------LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
+ + + L E + E A ++KVL+
Sbjct: 314 VDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
Score = 32.9 bits (75), Expect = 0.25
Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 9/118 (7%)
Query: 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329
L+ R + + + Y + E Q+ M
Sbjct: 56 SLMCFR---HQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEF 112
Query: 330 KLKQAKPAKDQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
K+ A +A + + + F+ AY + + ++ + L I
Sbjct: 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI 170
Score = 29.8 bits (67), Expect = 2.3
Identities = 10/104 (9%), Positives = 23/104 (22%), Gaps = 9/104 (8%)
Query: 194 GSEYDIPENLEKALEKF-KYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE 252
+KA + + + + + + ++ FE
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327
Query: 253 KIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAI 296
K + + FE A Y+K +
Sbjct: 328 KKNL--------HAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 49.7 bits (118), Expect = 9e-07
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
+ A+ L + + + I+LE + + G Y A +
Sbjct: 280 YQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFN 338
Query: 381 IDPNNKAA 388
+ P
Sbjct: 339 LRPGANTL 346
Score = 35.8 bits (82), Expect = 0.027
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFR--RGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV 389
KQ + D + L N + + + L + + + + + ++ + V
Sbjct: 255 KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYV 314
Score = 35.1 bits (80), Expect = 0.041
Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 8/65 (12%)
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAY--------LDLNEPELAEKDFQKVLQIDP 383
K A + + ++ P A + LD + + ++ +
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 384 NNKAA 388
N +
Sbjct: 273 LNNLS 277
Score = 30.1 bits (67), Expect = 1.5
Identities = 7/88 (7%), Positives = 22/88 (25%), Gaps = 16/88 (18%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
+ + + K + + + I + + + ++
Sbjct: 283 KAVSALVKGKTDESYQAINTGI---------------DLEMSWLN-YVLLGKVYEMKGMN 326
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAY 362
+ A D A L P ++ +
Sbjct: 327 REAADAYLTAFNLRPGANTLYWIENGIF 354
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 49.8 bits (119), Expect = 1e-06
Identities = 34/260 (13%), Positives = 81/260 (31%), Gaps = 27/260 (10%)
Query: 183 QEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPA 242
+ F G A++ FK E +FV + + K+
Sbjct: 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMK 157
Query: 243 TYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFD 302
+M+ + + ++ + + + T + ++E A +++KA
Sbjct: 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA--- 214
Query: 303 GGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL------EPNNEKAFF 356
+ ++ + + N +C Q + A +AI + P+ +A+F
Sbjct: 215 ------EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268
Query: 357 RRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE-KQVYANMFD 415
+ L + + A + K + + + + + K +Y + D
Sbjct: 269 LITQIHYKLGKIDKAHEYHSKGMAY----------SQKAGDVIYLSEFEFLKSLYLSGPD 318
Query: 416 KFAKHDTEKEEEEKKKEPDV 435
+ A E K D+
Sbjct: 319 EEAIQGFFDFLESKMLYADL 338
Score = 37.1 bits (86), Expect = 0.011
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 20/112 (17%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
++K K + A + K + Y +K +L+ L L +
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAY--------------SQKAGDVIYLSEFEFLKSLYLSG 316
Query: 336 PAKDQCDKAI------ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
P ++ L + E Y + + A F KV Q+
Sbjct: 317 PDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
Score = 27.9 bits (62), Expect = 9.3
Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 9/104 (8%)
Query: 194 GSEYDIPENLEKALEKF-KYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE 252
+ ++KA E K S+ +L + L + + E
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330
Query: 253 KIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAI 296
+ + Y ++ F+ A + K
Sbjct: 331 SKM--------LYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 48.0 bits (114), Expect = 3e-06
Identities = 17/170 (10%), Positives = 44/170 (25%), Gaps = 34/170 (20%)
Query: 279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAK 338
+ A Y++A + ER + A+ L++ ++ A
Sbjct: 125 LMEPLDLSKAVHLYQQAA---------AVFENEERLRQAAELIGKASRLLVRQQKFDEAA 175
Query: 339 DQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392
K + P K + L + A+K ++ I
Sbjct: 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP---------- 225
Query: 393 TQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGEW 442
++ ++ + + D E+ + ++ +
Sbjct: 226 -------GFSGSEDCAALEDLLQAYDEQDEEQLLRVCRS--PLVTYMDND 266
Score = 32.9 bits (75), Expect = 0.18
Identities = 26/110 (23%), Positives = 36/110 (32%), Gaps = 14/110 (12%)
Query: 280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL--NAAMCLLKLKQAKPA 337
K A + KA YL F + +A AA+ KQ + A
Sbjct: 2 IAAQKISEAHEHIAKAEKYLK--TSFMKW----KPDYDSAASEYAKAAVAFKNAKQLEQA 55
Query: 338 KDQCDKAIELEPNNE------KAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
KD + E NN KAF + G DL A + +K +
Sbjct: 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM 105
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 45.5 bits (107), Expect = 5e-06
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 21/111 (18%)
Query: 308 EQETERKKTLTACHLNAAMCLLKLKQAKPAKDQ----------CDKAIELEPNNEKAFFR 357
E + LL+L Q D ++A+ ++P ++A +
Sbjct: 26 ENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC 85
Query: 358 RGNAYLDLNEP-----------ELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397
GNAY +LA + FQ+ + P+N ++ L T +
Sbjct: 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136
Score = 34.7 bits (79), Expect = 0.026
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL----------NEPELAEKDFQKVL 379
++ + + + + P + R G L+L + A F++ L
Sbjct: 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL 73
Query: 380 QIDPNNKAAVQKL---TQTKQKLREQKIKEKQVYANMFDKFAK 419
IDP AV + + L + + K + F +
Sbjct: 74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ 116
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 44.7 bits (105), Expect = 4e-05
Identities = 7/59 (11%), Positives = 19/59 (32%)
Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
+ L+ + + + N A+ R + + + ++L+ D N
Sbjct: 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233
Score = 42.8 bits (100), Expect = 2e-04
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 341 CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
IE +P N + + R L +P + +L D N
Sbjct: 155 ITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199
Score = 39.7 bits (92), Expect = 0.002
Identities = 8/120 (6%), Positives = 29/120 (24%), Gaps = 21/120 (17%)
Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
R + + + + + K
Sbjct: 172 RRVLVEWLRDPSQELEFIADIL---------------NQDAKNYHAWQHRQWVIQEFKLW 216
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAE------KDFQKVLQIDPNNKAA 388
D+ ++ + N + +R + + +++++ P+N++A
Sbjct: 217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 276
Score = 38.9 bits (90), Expect = 0.003
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 341 CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA--AVQKLTQTKQK 398
+ I+L P+NE A+ D ++L + P++ + + L +
Sbjct: 263 TLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 321
Query: 399 LREQKIKEKQVYAN 412
+ E + K+ N
Sbjct: 322 MLENQCDNKEDILN 335
Score = 33.5 bits (76), Expect = 0.15
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAE-KDFQKVLQI 381
L + ++++ A AIEL N + R L + E +++
Sbjct: 102 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 161
Query: 382 DPNNKAA 388
P N
Sbjct: 162 QPKNYQV 168
Score = 30.8 bits (69), Expect = 1.0
Identities = 8/63 (12%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRG----NAYLDLNEPELAEKDFQKV 378
N +L+ + + ++ ++L+P++ + + N+ + E K
Sbjct: 278 NYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 337
Query: 379 LQI 381
L++
Sbjct: 338 LEL 340
Score = 28.5 bits (63), Expect = 4.7
Identities = 5/42 (11%), Positives = 11/42 (26%)
Query: 344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
I + E A K + ++++ N
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN 130
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 43.0 bits (101), Expect = 5e-05
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
L LL+ + A + + + + + L+ + ELA++ +
Sbjct: 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69
Query: 382 DPNNKA----AVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHD 421
+N A +L Q + E K E+++ AN + +
Sbjct: 70 YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 60/492 (12%), Positives = 119/492 (24%), Gaps = 172/492 (34%)
Query: 123 PDSTL-VFEVEMISWEAEDI--SPTHDGGIRR---EILEEGAS----FSTPKDGANVEI- 171
D + E E + I S G R +L + F N +
Sbjct: 39 QDMPKSILSKE----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 172 --TLKGECEGKVFQEGTFSF---VLGEGSE----YDIP-----ENLEKALEKFKYKE--- 214
+K E + L ++ Y++ L +AL + + +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 215 --------KSRLF--------VQPQH----LWSGKGNDKLGVPSNKPATYTITMNNF-EK 253
K+ + VQ + W N N P T + +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC------NSPETVLEMLQKLLYQ 208
Query: 254 IKDTWQLNSD------EKLEQGKLLKERGTTYFKQ-------------------DKFELA 288
I W SD ++ ++ K + F L+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHS---IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 289 CR----------------NYKKAIPYLDFDGGFEGEQETE---------RKKTL--TACH 321
C+ I E + R + L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 322 LN---AAMCLLKLKQ--------AKPAKDQCDKAIE-----LEPNNEKAFFR-----RGN 360
N ++ ++ D+ IE LEP + F +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 361 A------------YLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ 408
A + ++ + K ++ K + + +L+ + E
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 409 VYANMFDKFAKHDTEKEEEEKKKEPDV---------MKTLGEWGAEERGRESTNFEKENP 459
++ ++ D + T ++ D +K + E T F
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI------EHPERMTLF----R 494
Query: 460 NIFMLDGTGDFK 471
+F+ DF+
Sbjct: 495 MVFL-----DFR 501
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 4e-04
Identities = 47/332 (14%), Positives = 94/332 (28%), Gaps = 112/332 (33%)
Query: 125 STLVFEVEMISWEAEDISPTHDGGIR-REILEEGASFSTPKDGANVEITLK-GECEGKVF 182
S +V W D G +I+ P +T+ G +GK
Sbjct: 1639 SKAAQDV----WNRADNHFKDTYGFSILDIVINN-----PV-----NLTIHFGGEKGKRI 1684
Query: 183 QEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSN-KP 241
+E +S ++ E + D EK ++ S F L +P
Sbjct: 1685 REN-YSAMIFE-TIVDGKLKTEKIFKEINEHSTSYTFRSE--------KGLLSATQFTQP 1734
Query: 242 ATYTITMNNFEKIKDTWQLNSD---------E-----------KLEQG-KLLKERGTTYF 280
A + FE +K + +D E +E +++ RG T
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM- 1793
Query: 281 KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQ 340
+ A+P E N M + + A
Sbjct: 1794 ------------QVAVP--------RDELGRS----------NYGMI--AINPGRVAASF 1821
Query: 341 CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI----DPN-------NKAAV 389
+A++ + E + ++ +++I N + A+
Sbjct: 1822 SQEALQ-----------------YVVE-RVGKRT-GWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 390 QKLTQTKQKLREQKIKEKQVYANM-FDKFAKH 420
+T ++ QKI ++ ++ ++ H
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 38.9 bits (91), Expect = 7e-04
Identities = 12/84 (14%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEK---AFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383
+ + A+ Q + P ++K + G + + A++ Q+V P
Sbjct: 48 SYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107
Query: 384 NNKAAVQKLTQTKQKLREQKIKEK 407
+ AA +++L+ ++ ++
Sbjct: 108 GSDAARVA----QERLQSIRLGQQ 127
Score = 33.1 bits (76), Expect = 0.054
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEK---AFFRRGNAYLDLNEPELAEKDFQKVL 379
N A LK + A +EL PN A + G +Y +LAE F+ ++
Sbjct: 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66
Query: 380 QIDPN-NKA--AVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKE 432
P +KA + KL ++ + + +Q + ++ D + +E+ +
Sbjct: 67 SRYPTHDKAAGGLLKLGLSQYGE-GKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 40.0 bits (93), Expect = 0.001
Identities = 21/126 (16%), Positives = 33/126 (26%), Gaps = 17/126 (13%)
Query: 267 EQGKLLKERGTTYFKQ-DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAA 325
E G + A Y+ A + + + C + A
Sbjct: 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWY---------AQDQSVALSNKCFIKCA 165
Query: 326 MCLLKLKQAKPAKDQCDKAIELEPNNE-------KAFFRRGNAYLDLNEPELAEKDFQKV 378
Q A D K I+ N F ++G L + A + Q+
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225
Query: 379 LQIDPN 384
DPN
Sbjct: 226 QSEDPN 231
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 38.8 bits (91), Expect = 0.001
Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 14/125 (11%)
Query: 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL 322
+ + + L + G ++ A R + + L E +A
Sbjct: 60 GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL--------ASLPEDPLAASANAY 111
Query: 323 NAAMCLLKLKQAKPAKDQCDKAIEL--EPNNE----KAFFRRGNAYLDLNEPELAEKDFQ 376
A L A+ + +K++ + +++ AF G+ A++ +
Sbjct: 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171
Query: 377 KVLQI 381
+ I
Sbjct: 172 RARDI 176
Score = 35.3 bits (82), Expect = 0.019
Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 16/126 (12%)
Query: 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL 322
G Y D+F+ A +++ + Q++
Sbjct: 20 AHPATASGARFMLGYVYAFMDRFDEARASFQALQ---------QQAQKSGDHTAEHRALH 70
Query: 323 NAAMCLLKLKQAKPAKDQCDKAIEL--EPNNEK-----AFFRRGNAYLDLNEPELAEKDF 375
M A+ + EL + + L + A +++
Sbjct: 71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130
Query: 376 QKVLQI 381
+K L
Sbjct: 131 EKSLVY 136
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 39.4 bits (93), Expect = 0.002
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 36/124 (29%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQ--ETERKKTLTACHLNAAMCLLKLKQ 333
+ Y KQ K +K+A ++ ++ + + ++
Sbjct: 202 ASCYLKQGK-------FKQAETLY--------KEILTRAHEREFGSVDDENKPIWMHAEE 246
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRR----------------GNAYLDLNEPELAEKDFQK 377
+ K + E + + G Y + E AE +
Sbjct: 247 REECKGKQKDGTSFG---EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303
Query: 378 VLQI 381
++
Sbjct: 304 AMRS 307
Score = 31.4 bits (72), Expect = 0.62
Identities = 24/125 (19%), Positives = 36/125 (28%), Gaps = 37/125 (29%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETE-RKKTLTACHLNAAMCLLKLKQA 334
Y Q+K YK A L R+KTL H A L L
Sbjct: 76 ALVYRDQNK-------YKDAANLL--------NDALAIREKTLGKDHPAVAATLNNLAVL 120
Query: 335 KPAKDQCDKAIELEPNNEKAFFRR------------------GNAYLDLNEPELAEKDFQ 376
+ + +A L ++A R + + E E +Q
Sbjct: 121 YGKRGKYKEAEPLC---KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177
Query: 377 KVLQI 381
+ L+I
Sbjct: 178 RALEI 182
Score = 29.4 bits (67), Expect = 2.1
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 37/125 (29%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETE-RKKTLTACHLNAAMCLLKLKQA 334
Y K+ K YK+A P ++ E R+K L H + A L L
Sbjct: 118 AVLYGKRGK-------YKEAEPLC--------KRALEIREKVLGKDHPDVAKQLNNLALL 162
Query: 335 KPAKDQCDKAIELEPNNEKAFFRR------------------GNAYLDLNEPELAEKDFQ 376
+ + ++ ++A + YL + + AE ++
Sbjct: 163 CQNQGKYEEVEYYY---QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219
Query: 377 KVLQI 381
++L
Sbjct: 220 EILTR 224
Score = 28.3 bits (64), Expect = 5.2
Identities = 19/107 (17%), Positives = 27/107 (25%), Gaps = 43/107 (40%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETE-RKKTLTACHLNAAMCLLKLKQA 334
Y Q + Y+ A+P +Q E +KT H + A L
Sbjct: 34 VIQYASQGR-------YEVAVPLC--------KQALEDLEKTSGHDHPDVATML------ 72
Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
N Y D N+ + A L I
Sbjct: 73 ---------------NI------LALVYRDQNKYKDAANLLNDALAI 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A
{Rhodothermus marinus}
Length = 261
Score = 37.4 bits (87), Expect = 0.005
Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 30/150 (20%)
Query: 270 KLLKERGTTY-FKQDKFELACRNYKKAIPYLD-----FDGGFEGEQETERKKTLTACHLN 323
L+ F++ Y +AI Y
Sbjct: 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAAD----------AQFY 57
Query: 324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEK---AFFRRGNAY--------LDLNEPELAE 372
A + K+ A + ++ I++ + + A + R Y LD + A
Sbjct: 58 LARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAI 117
Query: 373 KDFQKVLQIDPNNK---AAVQKLTQTKQKL 399
+ FQ + PN++ A QK+ + + KL
Sbjct: 118 EAFQLFIDRYPNHELVDDATQKIRELRAKL 147
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 38.1 bits (89), Expect = 0.006
Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 15/112 (13%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
G ++ +FE A +YK+ + E ++ + L +
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTLALA---------VELGEREVEAQSCYSLGNTYTLLHEFN 320
Query: 336 PAKDQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
A + ++ + + +A + GNA+ + E A K ++ LQ+
Sbjct: 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 37.7 bits (88), Expect = 0.006
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 291 NYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350
+ DG + ++ ++ L + AI+
Sbjct: 23 SGGGGTNS--HDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE 80
Query: 351 NEK----AFFRRGNAYLDLNEPELAEKDFQKVLQI 381
+ + + + GNAY L + A + + L +
Sbjct: 81 DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115
Score = 33.0 bits (76), Expect = 0.22
Identities = 18/142 (12%), Positives = 44/142 (30%), Gaps = 32/142 (22%)
Query: 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL 322
+++L + K G T +F+ A ++ L ++ + +
Sbjct: 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH---LTLA------RQLGDRLSEGRALY 170
Query: 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA--FFRR---------------------G 359
N + ++ +++ +A F++ G
Sbjct: 171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLG 230
Query: 360 NAYLDLNEPELAEKDFQKVLQI 381
N Y L + + A + Q+ L+I
Sbjct: 231 NTYYLLGDFQAAIEHHQERLRI 252
Score = 31.5 bits (72), Expect = 0.67
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 8/61 (13%)
Query: 329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
+Q + +EL E G + + FQ +Q +
Sbjct: 33 GNSQQGSGSDGGSSMCLEL--ALE------GERLCNAGDCRAGVAFFQAAIQAGTEDLRT 84
Query: 389 V 389
+
Sbjct: 85 L 85
Score = 30.0 bits (68), Expect = 1.9
Identities = 16/123 (13%), Positives = 31/123 (25%), Gaps = 43/123 (34%)
Query: 259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT 318
Q +++ + + G YF + A + +K
Sbjct: 76 QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD----------------------- 112
Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
L AK D+ +A N GN + + A ++
Sbjct: 113 ------------LTLAKSMNDRLGEAKSS--GN------LGNTLKVMGRFDEAAICCERH 152
Query: 379 LQI 381
L +
Sbjct: 153 LTL 155
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 37.3 bits (87), Expect = 0.008
Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 17/120 (14%)
Query: 268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMC 327
L G K ++ A+ + TE KTL+A +
Sbjct: 8 SCLELALEGERLCKSGDCRAGVSFFEAAV-----------QVGTEDLKTLSAIYSQLGNA 56
Query: 328 LLKLKQAKPAKDQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
L A + + L + KA GN L + A Q+ L I
Sbjct: 57 YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116
Score = 36.9 bits (86), Expect = 0.013
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 15/125 (12%)
Query: 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL 322
+K + + G Y +FE A YKK + ++ + +
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA---------RQLKDRAVEAQSCY 271
Query: 323 NAAMCLLKLKQAKPAKDQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376
+ L+ + A D K + + +A + GNAY L + A +
Sbjct: 272 SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331
Query: 377 KVLQI 381
K L+I
Sbjct: 332 KHLEI 336
Score = 32.3 bits (74), Expect = 0.36
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 15/125 (12%)
Query: 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL 322
++ QG+ G T++ F A +++ + +E K +
Sbjct: 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI---------AKEFGDKAAERRAYS 231
Query: 323 NAAMCLLKLKQAKPAKDQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376
N + L + + A + K + L ++ + GN Y L + E A
Sbjct: 232 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291
Query: 377 KVLQI 381
K L I
Sbjct: 292 KHLAI 296
Score = 30.7 bits (70), Expect = 0.96
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 310 ETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK----AFFRRGNAYLDL 365
+ + L K + + A+++ + K + + GNAY L
Sbjct: 2 PGSMEASCLELA-LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL 60
Query: 366 NEPELAEKDFQKVLQI 381
++ A + L +
Sbjct: 61 HDYAKALEYHHHDLTL 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 36.7 bits (86), Expect = 0.009
Identities = 14/124 (11%), Positives = 33/124 (26%), Gaps = 36/124 (29%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQ--ETERKKTLTACHLNAAMCLLKLKQ 333
+ Y KQ K Y+ A ++ +K + + + + ++
Sbjct: 176 ASCYLKQGK-------YQDAETLY--------KEILTRAHEKEFGSVNGDNKPIWMHAEE 220
Query: 334 AKPAKDQCDKAIELEPNNEKAFFRR----------------GNAYLDLNEPELAEKDFQK 377
+ +KD+ + E + + G Y + E A
Sbjct: 221 REESKDKRRDSAPYG---EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277
Query: 378 VLQI 381
+
Sbjct: 278 ASRN 281
Score = 27.9 bits (63), Expect = 6.2
Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 37/125 (29%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETE-RKKTLTACHLNAAMCLLKLKQA 334
Y Q+K YK+A L R+KTL H A L L
Sbjct: 50 ALVYRDQNK-------YKEAAHLL--------NDALAIREKTLGKDHPAVAATLNNLAVL 94
Query: 335 KPAKDQCDKAIELEPNNEKAFFRR------------------GNAYLDLNEPELAEKDFQ 376
+ + +A L ++A R + + E E ++
Sbjct: 95 YGKRGKYKEAEPLC---KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151
Query: 377 KVLQI 381
+ L+I
Sbjct: 152 RALEI 156
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Length = 108
Score = 34.8 bits (79), Expect = 0.011
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 176 ECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLG 235
C+ F +G F+FV G G + + ++F+Q + + + + +
Sbjct: 25 ACQSHAFMKGVFTFVTGTGMAFGL-----------------QMFIQRKFPYPLQWSLLVA 67
Query: 236 VPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGT 277
V + +Y +T EK + W LE G+L K+R T
Sbjct: 68 VVAGSVVSYGVTRVESEKCNNLWLF-----LETGQLPKDRST 104
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 36.5 bits (85), Expect = 0.014
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 15/125 (12%)
Query: 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL 322
+K + + G Y +FE A YKK + ++ + +
Sbjct: 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL---------LLARQLKDRAVEAQSCY 267
Query: 323 NAAMCLLKLKQAKPAKDQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376
+ L+ + A D K + + +A + GNAY L + A +
Sbjct: 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327
Query: 377 KVLQI 381
K L+I
Sbjct: 328 KHLEI 332
Score = 34.9 bits (81), Expect = 0.047
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 17/116 (14%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
L G K ++ A+ + TE KTL+A + L
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAV-----------QVGTEDLKTLSAIYSQLGNAYFYL 56
Query: 332 KQAKPAKDQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
A + + L + KA GN L + A Q+ L I
Sbjct: 57 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112
Score = 32.6 bits (75), Expect = 0.25
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 15/124 (12%)
Query: 264 EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLN 323
++ QG+ G T++ F A +++ + +E K + N
Sbjct: 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI---------AKEFGDKAAERRAYSN 228
Query: 324 AAMCLLKLKQAKPAKDQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQK 377
+ L + + A + K + L ++ + GN Y L + E A K
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288
Query: 378 VLQI 381
L I
Sbjct: 289 HLAI 292
Score = 28.8 bits (65), Expect = 3.6
Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 23/128 (17%)
Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
+GK G + E + A+ E+ L
Sbjct: 135 AKGKSFGCPGP-QDTGEFPEDVRNALQAAVDLY--------EENLSLVTALGD-RAAQGR 184
Query: 327 CLLKLKQAKPAKDQCDKAIEL--------EPNNEKAFFRR-----GNAYLDLNEPELAEK 373
L A+ + +KA RR GNAY+ L E E A +
Sbjct: 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244
Query: 374 DFQKVLQI 381
++K L +
Sbjct: 245 YYKKTLLL 252
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.027
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 366 NEPELAEK---DFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ----VYANMFDKFA 418
EPE K + +K LQ A K +Q+ RE+ K+ + + +K
Sbjct: 82 QEPESIRKWREEQRKRLQE----LDAASK--VMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 419 KHDTEKEEEEKKKEPD 434
++ ++ ++
Sbjct: 136 INNRIADKAFYQQPDA 151
Score = 27.4 bits (60), Expect = 8.0
Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 387 AAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGEWGAEE 446
A +LTQ + +R+ + ++++ + + D + E++ K L EW +
Sbjct: 75 AQADRLTQEPESIRKWREEQRK-------RLQELDAASKVMEQEWREKAKKDLEEW-NQR 126
Query: 447 RGRESTNFEKEN 458
+ + + N
Sbjct: 127 QSEQVEKNKINN 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 33.6 bits (76), Expect = 0.10
Identities = 21/167 (12%), Positives = 46/167 (27%), Gaps = 18/167 (10%)
Query: 182 FQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKP 241
+Q ++VL + L+K L + + + + +
Sbjct: 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--------DVYQNLYIENAIANIYAEN 168
Query: 242 ATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF 301
++ FE+I + D + K+ + ++E + KAI
Sbjct: 169 GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-- 226
Query: 302 DGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQC-DKAIEL 347
+ + CL KL+ + + KA
Sbjct: 227 -------CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266
Score = 29.7 bits (66), Expect = 1.7
Identities = 18/145 (12%), Positives = 42/145 (28%), Gaps = 9/145 (6%)
Query: 244 YTITMNNFEKIKDTWQLNSDEKLEQGKLLK-ERGTTYFKQDKFELACRNYKKAIPYLDFD 302
+M+ + I Q+ E ER + Q + YK+ + +
Sbjct: 42 VYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101
Query: 303 GGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR---- 358
+ E+ + A +LK + + K + + +
Sbjct: 102 --LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159
Query: 359 --GNAYLDLNEPELAEKDFQKVLQI 381
N Y + + F+++L+
Sbjct: 160 AIANIYAENGYLKKGIDLFEQILKQ 184
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 33.6 bits (76), Expect = 0.18
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401
+ + + P+ R A N ++ D Q V +D + A+Q+ Q ++
Sbjct: 607 EMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITT 666
Query: 402 QKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGEWGAEERGRESTNFEKEN 458
+ KH+ ++ E+E + + K L + AE+ +E E +
Sbjct: 667 NSQEAAA----------KHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMS 713
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 31.4 bits (72), Expect = 0.32
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 15/112 (13%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
G Y +FE A YKK + ++ + + + L+ +
Sbjct: 56 GNAYIFLGEFETASEYYKKTL---------LLARQLKDRAVEAQSCYSLGNTYTLLQDYE 106
Query: 336 PAKDQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
A D K + + +A + GNAY L + A +K L+I
Sbjct: 107 KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 32.2 bits (72), Expect = 0.35
Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 16/159 (10%)
Query: 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329
+LL+E T + +L CR + + + K ++C CL+
Sbjct: 104 QLLQELCTVF----NVDLPCRVKSSQLGIIS---NKQTHTSAIVKPQSSSCSYICQHCLV 156
Query: 330 KLKQAKPAKDQCD-------KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382
L ++Q A +L P+N + + + + + + + +
Sbjct: 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216
Query: 383 PNNKAAVQKLTQTKQKLREQ--KIKEKQVYANMFDKFAK 419
AA L + K E ++K K ++ F K
Sbjct: 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIK 255
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 30.6 bits (69), Expect = 0.44
Identities = 4/59 (6%), Positives = 14/59 (23%)
Query: 374 DFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKE 432
+ + Q L + + + + K + + +K+
Sbjct: 10 NMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKD 68
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 144
Score = 30.6 bits (69), Expect = 0.50
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 264 EKLEQGKLLKERGTTYFKQDKFELAC--------RNYKKAIPYLDFDGGFEGEQETERKK 315
E L Q +++ E G T Q +F A + + + L ++ + R+
Sbjct: 23 EILRQ-QVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILT--DIYKEAESRRRE- 78
Query: 316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA 354
C + KL + AK D E E NN++
Sbjct: 79 ----CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 31.5 bits (71), Expect = 0.72
Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 5/145 (3%)
Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGE----QETERKKTL 317
++ L++ L + K +E A + Y+ A+ Y +E + +++ R K
Sbjct: 4 TNTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCT 63
Query: 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK 377
+ K+ K + + + + D + +L +
Sbjct: 64 EYLDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGA 123
Query: 378 VLQIDPNNK-AAVQKLTQTKQKLRE 401
++ PN K + V L K+ L+E
Sbjct: 124 IVIERPNVKWSDVAGLEGAKEALKE 148
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 29.1 bits (65), Expect = 0.92
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAVQKLTQTKQK 398
++A++LEP NE A N + + A + +L + N ++ + + K+
Sbjct: 33 EQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIESINKAKKL 92
Query: 399 L 399
+
Sbjct: 93 M 93
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 30.6 bits (69), Expect = 1.1
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQI------DPNNKAAVQKLTQTKQKLREQKIK 405
E+ FR L L E L + DF + Q D + + + + R +K
Sbjct: 259 EEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPEDLPAEELFASIATIQMQSRNKK-- 316
Query: 406 EKQVYANMFDKFAKHDTEKEE 426
+A + K E E+
Sbjct: 317 ----WAQVLTALQKDSREMEK 333
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar
binding, sugar binding protein, beta-galactoside binding
lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A
{Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A*
1ulf_A* 1ulg_A* 1uld_A*
Length = 150
Score = 29.5 bits (66), Expect = 1.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 440 GEWGAEERGRESTNFEKENPNIFMLDGTGDFK 471
G WG EER + F NP+I ++D F+
Sbjct: 70 GAWGPEERIPYAEKFRPPNPSITVIDHGDRFQ 101
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated
protein, nascent chain, cell division, isomerase; 2.7A
{Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1
PDB: 2vrh_A 1w2b_5
Length = 432
Score = 29.9 bits (68), Expect = 1.7
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 51 KVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCK-PE 109
+V + +TG++ DG F+ K F +G+G++I ++ GI K E PE
Sbjct: 163 RVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPE 219
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase,
chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1
d.241.2.1 d.26.1.1 PDB: 1l1p_A
Length = 392
Score = 29.9 bits (68), Expect = 1.7
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 51 KVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCK-PE 109
+V + + G++ DG F+ K E F ++G G++I ++ GI K V PE
Sbjct: 166 RVSIDFVGSI-DGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPE 222
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 29.7 bits (66), Expect = 2.1
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 1/111 (0%)
Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL-NEPELAEKDFQKVLQIDPNNKAAVQ 390
++ K KA + K + E + A++ F+K+ KA V+
Sbjct: 116 QERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVE 175
Query: 391 KLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGE 441
K Q Q + K Y+++ KF E ++ + E
Sbjct: 176 KARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEE 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR,
scaffold, peroxisome, membrane fission, protein binding;
1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A
3uux_A
Length = 134
Score = 28.3 bits (63), Expect = 2.6
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 264 EKLEQGKLLKERGTTYFKQDKFELAC--------RNYKKAIPYLDFDGGFEGEQETERKK 315
E L Q +++ E G T Q +F A + + + L ++ + R+
Sbjct: 24 EILRQ-QVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILT--DIYKEAESRRRE- 79
Query: 316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA 354
C + KL + AK D E E NN++
Sbjct: 80 ----CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.7
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 22/47 (46%)
Query: 204 EK-ALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMN 249
EK AL+K + + L KL + PA + +
Sbjct: 18 EKQALKKLQ----ASL--------------KLYADDSAPA---LAIK 43
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 3.9
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 189 FVLGEGSEYDIPENLEKALE 208
F+ +G+ I + AL+
Sbjct: 1177 FMEAQGAGIQIIMQADLALK 1196
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma
genitalium} SCOP: d.26.1.1
Length = 113
Score = 27.5 bits (62), Expect = 4.2
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 51 KVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDE 100
+ +TG + D S+ + +E +G IK ++ G+ MK ++
Sbjct: 35 IAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQ 81
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote
interaction, syphilis, lipoprotein, transport protein;
2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Length = 301
Score = 28.6 bits (63), Expect = 4.5
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 5/75 (6%)
Query: 337 AKDQCDKAIELEPNNE---KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
A + ++ + N ++ + L IDP KL
Sbjct: 223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR-AGFDEALDRALAIDP-ESVPHNKLL 280
Query: 394 QTKQKLREQKIKEKQ 408
+ R + +K
Sbjct: 281 VILSQKRARWLKAHV 295
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 28.1 bits (63), Expect = 5.7
Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQI----DPNNKAAVQKLTQTKQKLREQKIKEK 407
F A L ++ +L + DF+ L+ P A + + ++ K+ K
Sbjct: 220 LNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTK 279
Query: 408 QVYANMFDKFAKHDTEKEEEEKKKEP 433
+ + ++ T +E + ++++P
Sbjct: 280 K----LKKYEKEYQTMRESQLQQEDP 301
>3naj_A Galectin-8; sugar binding protein; HET: GAL BGC; 2.80A {Homo
sapiens} PDB: 3ojb_A
Length = 291
Score = 28.2 bits (62), Expect = 5.8
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 440 GEWGAEERGRESTNFEKENP-NIFMLDGTGDFK 471
WG EER S F + + +FK
Sbjct: 221 ESWGEEERNITSFPFSPGMYFEMIIYCDVREFK 253
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET: TAR;
2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 27.9 bits (63), Expect = 6.5
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 103 VFTCKPEYAYGKQGSPPTIPPDSTLV-FEVEM---ISWEAEDISP 143
+ KP + G +IP D V E+E+ I S
Sbjct: 41 ILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRAST 85
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1
PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Length = 809
Score = 28.4 bits (64), Expect = 6.7
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 183 QEGTFSFVLGEGSEYD---IPENLEKALEKFKYKEKSRLFVQPQHLW-SGKGNDKLGV 236
Q F ++ G EYD P ++KA++ Y + Q + G+ + +G+
Sbjct: 424 QPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGI 481
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 27.1 bits (60), Expect = 7.3
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 281 KQDKFELAC--------RNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK 332
K +FE A + +K I L+ + E++ A+ +LK
Sbjct: 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLE--ELLPKGSKEEQRD----YVFYLAVGNYRLK 85
Query: 333 QAKPAKDQCDKAIELEPNNEKA 354
+ + A ++ EP N +A
Sbjct: 86 EYEKALKYVRGLLQTEPQNNQA 107
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.9 bits (62), Expect = 9.7
Identities = 7/47 (14%), Positives = 21/47 (44%)
Query: 386 KAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKE 432
+ +++ +QKL+ +K+ M D + + + K+++
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.132 0.383
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,275,578
Number of extensions: 449258
Number of successful extensions: 1681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1192
Number of HSP's successfully gapped: 404
Length of query: 473
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 376
Effective length of database: 3,993,456
Effective search space: 1501539456
Effective search space used: 1501539456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (26.4 bits)