BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4393
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 166 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 225
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 226 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 285
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 286 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 159 KTGKCLKTLPAH--SDPVSAVHFNRD 182
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 266 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 319
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 320 ALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 96
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 97 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 168 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 227
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 228 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 287
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 288 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 161 KTGKCLKTLPAH--SDPVSAVHFNRD 184
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 208 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 267
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 268 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 321
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 322 ALENDKTIKLW 332
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 413 bits (1062), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 4/157 (2%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 174
W+++T + ++ L H+D V + + ++I S++ +
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 140 KTGKCLKTLPAH--SDPVSAVHFNRD 163
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 247 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 130 SF--DESVRIW 138
+ D++++++
Sbjct: 301 ALENDKTIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 4/157 (2%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 174
W+++T + ++ L H+D V + + ++I S++ +
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 140 KTGKCLKTLPAH--SDPVSAVHFNRD 163
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK---------LGISDVAWSSD 80
VS VKFSPNG+++ +++ D +K+W GK KT +GHK ++ W
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW--- 254
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
+VSGS+D + IW L + + ++ L+GH++ V +P N+I S + + I
Sbjct: 255 ---IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 89
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 161 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 220
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 221 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 280
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 281 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 154 KTGKCLKTLPAH--SDPVSAVHFNRD 177
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 201 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 260
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 261 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 314
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 315 ALENDKTIKLW 325
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 73
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 145 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 204
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 205 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 264
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 265 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 138 KTGKCLKTLPAH--SDPVSAVHFNRD 161
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 185 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 244
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 245 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 298
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 299 ALENDKTIKLW 309
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 203
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 204 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 137 KTGKCLKTLPAH--SDPVSAVHFNRD 160
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 243
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 244 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 298 ALENDKTIKLW 308
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 209
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 210 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 270 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 143 KTGKCLKTLPAH--SDPVSAVHFNRD 166
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 249
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 250 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 304 ALENDKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 77
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 149 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 208
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 209 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 268
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 269 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 142 KTGKCLKTLPAH--SDPVSAVHFNRD 165
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 189 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 248
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 249 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 302
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 303 ALENDKTIKLW 313
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 203
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 204 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 137 KTGKCLKTLPAH--SDPVSAVHFNRD 160
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 243
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 244 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 298 ALENDKTIKLW 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 209
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 210 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 270 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 143 KTGKCLKTLPAH--SDPVSAVHFNRD 166
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 249
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 250 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 304 ALENDKTIKLW 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/208 (96%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLA+SSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + + S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 140 KTGKCLKTLPAH--SDPVSAVHFNRD 163
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 247 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 301 ALENDKTIKLW 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 209
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 210 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 270 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 143 KTGKCLKTLPAH--SDPVSAVHFNRD 166
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 249
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 250 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 304 ALENDKTIKLW 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 71
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 132 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 191
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 143 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 202
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 203 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 262
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 263 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 136 KTGKCLKTLPAH--SDPVSAVHFNRD 159
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 183 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 242
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 243 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 296
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 297 ALENDKTIKLW 307
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 68
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 140 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 199
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 200 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 259
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 260 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 133 KTGKCLKTLPAH--SDPVSAVHFNRD 156
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 180 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 239
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 240 FSVTGGKW------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 293
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 294 ALENDKTIKLW 304
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 409 bits (1051), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/208 (96%), Positives = 203/208 (97%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y L FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TG CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D TLK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 140 KTGMCLKTLPAH--SDPVSAVHFNRD 163
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 247 FSVTGGKW------IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 301 ALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 406 bits (1044), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/208 (95%), Positives = 202/208 (97%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y L FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
IWDV+TG CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
PPVSFVKFSPNGKYILAATLDN LKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 6/165 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSD 80
TL H+ VS+V F+ +G + SSS D L +IW G+ KT I +S V +S +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC--CNFN-PQSNLIVSGSFDESVRI 137
+ +++ + D LK+W+ S GKCLKT GH N +C NF+ IVSGS D V I
Sbjct: 207 GKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIW 180
W+++T + ++ L H+D V + + ++I S++ D ++W
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
TL GH+ V F+P + S S D+ ++IW GK KT+ H +S V ++ D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+L+VS+S D +IWD +SG+CLKTL N V F+P I++ + D ++++WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
K PA S P++ +F R+
Sbjct: 140 KTGMCLKTLPAH--SDPVSAVHFNRD 163
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------- 69
LK + VS VKFSPNG+++ +++ D +K+W GK KT +GHK
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
++ W +VSGS+D + IW L + + ++ L+GH++ V +P N+I S
Sbjct: 247 FSVTGGKW------IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 130 SF--DESVRIW 138
+ D+++++W
Sbjct: 301 ALENDKTIKLW 311
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
TL GH+ +V V FSP+G+ +AS+S DK +K+W +G+ +T++GH + VA+S D
Sbjct: 93 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 151
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
+ + S SDDKT+K+W +G+ L+TL GHS+ V+ F+P I S S D++V++W+ R
Sbjct: 152 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-R 209
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
G+ L+TL HS V V F+ DG I S+S D ++W+ +GQ L+TL + V+
Sbjct: 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVNG 267
Query: 202 VKFSPNGKYILAATLDNTLKLWD 224
V F P+G+ I +A+ D T+KLW+
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWN 290
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
TL GH+ +V V FSP+G+ +AS+S DK +K+W +G+ +T++GH + VA+S D
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 110
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
+ + S SDDKT+K+W +G+ L+TL GHS+ V+ F+P I S S D++V++W+ R
Sbjct: 111 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-R 168
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
G+ L+TL HS V V F+ DG I S+S D ++W+ +GQ L+TL + V
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRG 226
Query: 202 VKFSPNGKYILAATLDNTLKLWD 224
V FSP+G+ I +A+ D T+KLW+
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWN 249
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
TL GH+ +V V FSP+G+ +AS+S DK +K+W +G+ +T++GH + VA+S D
Sbjct: 380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDD 438
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
+ + S SDDKT+K+W +G+ L+TL GHS+ V F+P I S S D++V++W+ R
Sbjct: 439 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 496
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
G+ L+TL HS V V F+ DG I S+S D ++W+ +GQ L+TL + V
Sbjct: 497 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWG 554
Query: 202 VKFSPNGKYILAATLDNTLKLWD 224
V FSP+G+ I +A+ D T+KLW+
Sbjct: 555 VAFSPDGQTIASASSDKTVKLWN 577
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
TL GH+ +V+ V F P+G+ +AS+S DK +K+W +G+ +T++GH + VA+S D
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 315
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
+ + S SDDKT+K+W +G+ L+TL GHS+ V+ F+P I S S D++V++W+ R
Sbjct: 316 QTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-R 373
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
G+ L+TL HS V V F+ DG I S+S D ++W+ +GQ L+TL + V
Sbjct: 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWG 431
Query: 202 VKFSPNGKYILAATLDNTLKLWD 224
V FSP+ + I +A+ D T+KLW+
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWN 454
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
TL GH+ +V V FSP+G+ +AS+S DK +K+W +G+ +T++GH + VA+S D
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
+ + S SDDKT+K+W +G+ L+TL GHS+ V F+P I S S D++V++W+ R
Sbjct: 357 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 414
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
G+ L+TL HS V V F+ D I S+S D ++W+ +GQ L+TL + V
Sbjct: 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRG 472
Query: 202 VKFSPNGKYILAATLDNTLKLWD 224
V FSP+G+ I +A+ D T+KLW+
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWN 495
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 127/202 (62%), Gaps = 5/202 (2%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
L H+ +V V FSP+G+ +AS+S DK +K+W +G+ +T++GH + VA+S D +
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
+ S SDDKT+K+W +G+ L+TL GHS+ V F+P I S S D++V++W+ R
Sbjct: 71 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 128
Query: 143 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 202
G+ L+TL HS V V F+ DG I S+S D ++W+ +GQ L+TL + V V
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWGV 186
Query: 203 KFSPNGKYILAATLDNTLKLWD 224
FSP+G+ I +A+ D T+KLW+
Sbjct: 187 AFSPDGQTIASASDDKTVKLWN 208
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 104/171 (60%), Gaps = 5/171 (2%)
Query: 55 GAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY 113
G++ G E+ + H + VA+S D + + S SDDKT+K+W +G+ L+TL GHS+
Sbjct: 1 GSHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 59
Query: 114 VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 173
V+ F+P I S S D++V++W+ R G+ L+TL HS V V F+ DG I S+S
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 118
Query: 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
D ++W+ +GQ L+TL + V V FSP+G+ I +A+ D T+KLW+
Sbjct: 119 DKTVKLWN-RNGQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 21/225 (9%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
K+ L+GH V+ V F P + S+S D IK+W G FE+T+ GH + D+++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
+LL S S D T+K+W+ +C++T+ GH + V + P + IVS S D+++++W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
V+TG C+KT H + V V N+DG+LI S S D R+W A+ +C K + + V
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVV 279
Query: 200 SFVKFSPN--------------------GKYILAATLDNTLKLWD 224
+ ++P G ++L+ + D T+K+WD
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 124/225 (55%), Gaps = 21/225 (9%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
T+ GH VSSV PNG+ + S+S DK IK+W G KT +GH+ + V + D
Sbjct: 187 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN----------------- 124
L+ S S+D+T+++W +++ +C L+ H + V C ++ P+S+
Sbjct: 247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306
Query: 125 ---LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
++SGS D+++++WDV TG CL TL H + V V F+ G I+S + D R+WD
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
+ +C+KTL ++ V+ + F Y++ ++D T+K+W+ +
Sbjct: 367 YKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 120/205 (58%), Gaps = 16/205 (7%)
Query: 23 LAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
L GH ++ ++F N + S S D +K+W A GK +T+ GH G+ WSS
Sbjct: 114 LKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQM 167
Query: 82 R--LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
R +++SGS D+TLK+W +G+C+ TL GH++ V C + + + +VSGS D ++R+WD
Sbjct: 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWD 225
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
+ TG+CL L H V V + DG +VS +YD + ++WD + CL TL N
Sbjct: 226 IETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
S +F +G ++++ +LD ++++WD
Sbjct: 284 SL-QF--DGIHVVSGSLDTSIRVWD 305
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 107/205 (52%), Gaps = 8/205 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
TL GHT V + + S S D +++W G+ + GH + V + D
Sbjct: 194 TLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
R +VSG+ D +K+W+ + CL TL+GH+N V+ F+ +VSGS D S+R+WDV
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVE 307
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
TG C+ TL H S + + ++VS + D +IWD +GQCL+TL + +
Sbjct: 308 TGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 365
Query: 202 VKFSPNGKYILAATLDNTLKLWDSK 226
N +++ ++ D T+KLWD K
Sbjct: 366 TCLQFNKNFVITSSDDGTVKLWDLK 390
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 54 WGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY 113
W + K K + GH + +R+ VSGSDD TLK+W +GKCL+TL GH+
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNRI-VSGSDDNTLKVWSAVTGKCLRTLVGHTGG 161
Query: 114 VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 173
V+ + N+I+SGS D ++++W+ TG+C+ TL H+ V +H + +VS S
Sbjct: 162 VWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 217
Query: 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD + T
Sbjct: 218 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET 270
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 100/173 (57%), Gaps = 11/173 (6%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 235 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 290
Query: 83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
+VSGS D ++++W++ +G C+ TL GH + + N++VSG+ D +V+IWD++T
Sbjct: 291 HVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKT 348
Query: 143 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
G+CL+TL H V+ + FN++ +++SS DG ++WD +G+ ++ L+
Sbjct: 349 GQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLV 399
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 120/206 (58%), Gaps = 8/206 (3%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
L GH+ VS V S NG + S+S D +++W +G+ + GH + VA+S D+R
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 83 LLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 138
+VSG D L++W + G+C+ TL H+++V C F+P + +IVSG +D V++W
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
D+ TG+ + L H++ V++V + DGSL SS DG+ R+WD G+ L + P
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA--AGAP 239
Query: 199 VSFVKFSPNGKYILAATLDNTLKLWD 224
++ + FSPN +Y + A + ++++D
Sbjct: 240 INQICFSPN-RYWMCAATEKGIRIFD 264
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 114/218 (52%), Gaps = 18/218 (8%)
Query: 23 LAGHTKAVSSVKFSPNGEW---LASSSADKLIKIWGAYDGKF---------EKTISGHKL 70
L GH V+S+ E + S+S DK + WG + ++ + GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 130
+SDVA S++ VS S D +L++W L +G+C GH+ V F+P + IVSG
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 131 FDESVRIWDVRTGKCLKTLP--AHSDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQ 186
D ++R+W+V+ G+C+ TL AH+D VS V F+ D +IVS +D L ++WD A+G+
Sbjct: 129 RDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 187 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
+ L N V+ V SP+G ++ D +LWD
Sbjct: 188 LVTDLKGHTN-YVTSVTVSPDGSLCASSDKDGVARLWD 224
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 110/214 (51%), Gaps = 13/214 (6%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAW 77
++ GHTK V SV FSP+ + S D +++W G+ T+S H +S V +
Sbjct: 102 QYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRF 160
Query: 78 SS--DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 135
S D+ ++VSG D +K+W+L++G+ + LKGH+NYV +P +L S D
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVA 220
Query: 136 RIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
R+WD+ G+ L + A + P++ + F+ + + +++ G+ RI+D + + L +
Sbjct: 221 RLWDLTKGEALSEMAAGA-PINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPEH 278
Query: 196 N------PPVSFVKFSPNGKYILAATLDNTLKLW 223
P + +S +G + + DN +++W
Sbjct: 279 QGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 107 LKGHSNYV--FCCNFNPQS-NLIVSGSFDESVRIW----DVRTGKCLKTLP-----AHSD 154
L GH +V C P++ +VS S D+++ W D + +C LP HS
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 214
VS V + +G+ VS+S+D R+W+ +GQC + +S V FSP+ + I++
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLS-VAFSPDNRQIVSG 127
Query: 215 TLDNTLKLWDSK 226
DN L++W+ K
Sbjct: 128 GRDNALRVWNVK 139
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 43/125 (34%), Gaps = 47/125 (37%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--------------------- 61
L GHT V+SV SP+G ASS D + ++W G+
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYW 251
Query: 62 -----EKTISGHKLGISDV---------------------AWSSDSRLLVSGSDDKTLKI 95
EK I L D+ AWS+D L SG D +++
Sbjct: 252 MCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRV 311
Query: 96 WELSS 100
W +S
Sbjct: 312 WGVSE 316
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 17/172 (9%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK GI+ + +
Sbjct: 248 LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 305
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
RL+VSGS D T+++W++ G CL+ L+GH V C F+ + IVSG++D +++W
Sbjct: 306 D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVW 361
Query: 139 DVRTG---------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
D+ CL+TL HS V + F D IVSSS+D IWD
Sbjct: 362 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 8/148 (5%)
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
D + +VSG D T+KIW+ ++ +C + L GH+ V C ++ + +I++GS D +VR+WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWD 199
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 197
V TG+ L TL H + V + FN ++V+ S D +WD AS L+ ++
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 198 PVSFVKFSPNGKYILAATLDNTLKLWDS 225
V+ V F + KYI++A+ D T+K+W++
Sbjct: 258 AVNVVDF--DDKYIVSASGDRTIKVWNT 283
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 110/208 (52%), Gaps = 14/208 (6%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
K L GHT +V +++ + + + S+D +++W G+ T+ H + + +++
Sbjct: 166 KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN 223
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
++V+ S D+++ +W+++S + + L GH V +F+ + IVS S D +++
Sbjct: 224 G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIK 279
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
+W+ T + ++TL H ++ + + RD L+VS S D R+WD G CL+ L +
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACLQY-RD-RLVVSGSSDNTIRLWDIECGACLRVL-EGHE 336
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
V ++F + K I++ D +K+WD
Sbjct: 337 ELVRCIRF--DNKRIVSGAYDGKIKVWD 362
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 103/186 (55%), Gaps = 12/186 (6%)
Query: 42 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101
+ S D IKIW + ++ ++GH + + D R++++GS D T+++W++++G
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTG 203
Query: 102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL---KTLPAHSDPVSA 158
+ L TL H V FN + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 204 EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Query: 159 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 218
V F D IVS+S D ++W+T++ + ++TL + ++ +++ + +++ + DN
Sbjct: 262 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 316
Query: 219 TLKLWD 224
T++LWD
Sbjct: 317 TIRLWD 322
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 27/224 (12%)
Query: 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------------------G 67
HT V VKFS +GE+LA+ +K +++ DG +S
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 68 HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 127
L I V +S D + L +G++D+ ++IW++ + K + L+GH ++ ++ P + +V
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
SGS D +VRIWD+RTG+C TL + DG I + S D R+WD+ +G
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 188 LKTLIDDDNP-------PVSFVKFSPNGKYILAATLDNTLKLWD 224
++ L D +N V V F+ +G+ +++ +LD ++KLW+
Sbjct: 242 VERL-DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 20/223 (8%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
+ SV FSP+G++LA+ + D+LI+IW + K + GH+ I + + LVSGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL 149
D+T++IW+L +G+C TL I +GS D +VR+WD TG ++ L
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 150 PA-------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA------------SGQCLKT 190
+ H D V +V F RDG +VS S D ++W+ SG C T
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305
Query: 191 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII 233
I + +S V + N +YIL+ + D + WD K P ++
Sbjct: 306 YIGHKDFVLS-VATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 26/235 (11%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-S 79
L GH + + S+ + P+G+ L S S D+ ++IW G+ T+S G++ VA S
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPG 217
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLK-------GHSNYVFCCNFNPQSNLIVSGSFD 132
D + + +GS D+ +++W+ +G ++ L GH + V+ F +VSGS D
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 133 ESVRIWDVR------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
SV++W+++ +G C T H D V +V ++ I+S S D W
Sbjct: 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
Query: 181 DTASGQCLKTLIDDDNPPVSFV-----KFSPNGKYILAATLDNTLKLWDSKVVTP 230
D SG L L N +S P + D ++W K + P
Sbjct: 338 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAP 392
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
+ + HT AV FS +G+ +AS ADK ++++ A G+ I H+ + A+SS
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 667
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 137
D + + S DK +KIW+ ++GK + T HS V CC+F +SN L+ +GS D +++
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL------ 191
WD+ +C T+ H++ V+ F+ D L+ S S DG R+WD S K++
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 192 IDDDNPP------VSFVKFSPNGKYILAATLDNTL 220
+ ++PP V +S +G I+ A + L
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 16/217 (7%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
+ H V FS + ++A+ SADK +KIW + GK T H ++ +++ S
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 83 --LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 140
LL +GS+D LK+W+L+ +C T+ GH+N V C F+P L+ S S D ++R+WDV
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 141 RTGKCLKTLP------AHSDP-------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
R+ K++ + DP V ++ DG I+ ++ + + ++D +
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGL 831
Query: 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
L + + + + FSP + A ++LW+
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------DV 75
T+ GHT +V+ +FSP+ E LAS SAD +++W K+I+ + +S DV
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 76 -------AWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 128
+WS+D ++ + +K L +SG + GH + + C+F+P +L V
Sbjct: 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 129 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA----- 183
V +W++ + + H V V F+ DGS +++S D R+W+T
Sbjct: 858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 214
S LK ID V F N +LA
Sbjct: 918 SAIVLKQEID--------VVFQENETMVLAV 940
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 88/217 (40%), Gaps = 51/217 (23%)
Query: 24 AGHTKAVSSVKFSPNGEWLASSSADKLI-------------------------------- 51
GH KAV ++F+ +G+ L SSS D +I
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL 1059
Query: 52 --------KIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC 103
K+W G+ E+ + H+ + A SSD+ S S DKT KIW
Sbjct: 1060 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1119
Query: 104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL---------PAHSD 154
L LKGH+ V C F+ L+ +G + +RIW+V G+ L + H
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1179
Query: 155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
V+ V F+ D +VS+ G + W+ A+G +T
Sbjct: 1180 WVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTF 1214
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
++ H++ V+ F+ I S D++++++ TG+ L + AH D V F+ D
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT--LKLW 223
S I + S D +IWD+A+G+ + T D+ + V+ F+ ++L AT N LKLW
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 224 D 224
D
Sbjct: 729 D 729
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 96/211 (45%), Gaps = 16/211 (7%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS---DVAWSSDS 81
GH V V FSP+G ++S D+ I++W + +K + + DV + +
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW-----ETKKVCKNSAIVLKQEIDVVFQENE 934
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
++++ + + L +L +GK + V CC +P + G D +++I ++
Sbjct: 935 TMVLAVDNIRGL---QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP 991
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
+ + H V + F DG ++SSS D + ++W+ +G + + V
Sbjct: 992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKD 1049
Query: 202 VKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232
+ + + +L+ + D T+K+W+ V+T I
Sbjct: 1050 FRLLQDSR-LLSWSFDGTVKVWN--VITGRI 1077
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 152 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 211
H+D V F++DG I S D +++ +G+ L I V FS + YI
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-IKAHEDEVLCCAFSSDDSYI 672
Query: 212 LAATLDNTLKLWDS 225
+ D +K+WDS
Sbjct: 673 ATCSADKKVKIWDS 686
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
+ + HT AV FS +G+ +AS ADK ++++ A G+ I H+ + A+SS
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 674
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 137
D + + S DK +KIW+ ++GK + T HS V CC+F +SN L+ +GS D +++
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL------ 191
WD+ +C T+ H++ V+ F+ D L+ S S DG R+WD S K++
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 192 IDDDNPP------VSFVKFSPNGKYILAATLDNTL 220
+ ++PP V +S +G I+ A + L
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 829
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 16/217 (7%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
+ H V FS + ++A+ SADK +KIW + GK T H ++ +++ S
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 83 --LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 140
LL +GS+D LK+W+L+ +C T+ GH+N V C F+P L+ S S D ++R+WDV
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 141 RTGKCLKTLP------AHSDP-------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
R+ K++ + DP V ++ DG I+ ++ + + ++D +
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGL 838
Query: 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
L + + + + FSP + A ++LW+
Sbjct: 839 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 875
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------DV 75
T+ GHT +V+ +FSP+ E LAS SAD +++W K+I+ + +S DV
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 76 -------AWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 128
+WS+D ++ + +K L +SG + GH + + C+F+P +L V
Sbjct: 805 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 129 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA----- 183
V +W++ + + H V V F+ DGS +++S D R+W+T
Sbjct: 865 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 214
S LK ID V F N +LA
Sbjct: 925 SAIVLKQEID--------VVFQENETMVLAV 947
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 88/217 (40%), Gaps = 51/217 (23%)
Query: 24 AGHTKAVSSVKFSPNGEWLASSSADKLI-------------------------------- 51
GH KAV ++F+ +G+ L SSS D +I
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL 1066
Query: 52 --------KIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC 103
K+W G+ E+ + H+ + A SSD+ S S DKT KIW
Sbjct: 1067 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1126
Query: 104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL---------PAHSD 154
L LKGH+ V C F+ L+ +G + +RIW+V G+ L + H
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1186
Query: 155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
V+ V F+ D +VS+ G + W+ A+G +T
Sbjct: 1187 WVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTF 1221
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
++ H++ V+ F+ I S D++++++ TG+ L + AH D V F+ D
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT--LKLW 223
S I + S D +IWD+A+G+ + T D+ + V+ F+ ++L AT N LKLW
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 224 D 224
D
Sbjct: 736 D 736
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 96/211 (45%), Gaps = 16/211 (7%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS---DVAWSSDS 81
GH V V FSP+G ++S D+ I++W + +K + + DV + +
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW-----ETKKVCKNSAIVLKQEIDVVFQENE 941
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
++++ + + L +L +GK + V CC +P + G D +++I ++
Sbjct: 942 TMVLAVDNIRGL---QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP 998
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
+ + H V + F DG ++SSS D + ++W+ +G + + V
Sbjct: 999 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKD 1056
Query: 202 VKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232
+ + + +L+ + D T+K+W+ V+T I
Sbjct: 1057 FRLLQDSR-LLSWSFDGTVKVWN--VITGRI 1084
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 152 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 211
H+D V F++DG I S D +++ +G+ L I V FS + YI
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-IKAHEDEVLCCAFSSDDSYI 679
Query: 212 LAATLDNTLKLWDS 225
+ D +K+WDS
Sbjct: 680 ATCSADKKVKIWDS 693
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 2/174 (1%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
+ + HT AV FS +G+ +AS ADK ++++ A G+ I H+ + A+S+
Sbjct: 614 RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST 673
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 137
D R + + S DK +KIW +G+ + T HS V CC+F S+ L+ +GS D +++
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
WD+ +C T+ H++ V+ F+ D L+ S S DG ++WD S K++
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSI 787
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 7/186 (3%)
Query: 64 TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS 123
+ H + +S D + + S DKTL++++ +G+ L +K H + V CC F+
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 124 NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWD 181
I + S D+ V+IW+ TG+ + T HS+ V+ HF L+ + S D ++WD
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLN 241
+C T+ N V+ +FSP+ K + + + D TLKLWD+ +N+
Sbjct: 736 LNQKECRNTMFGHTN-SVNHCRFSPDDKLLASCSADGTLKLWDATSANE----RKSINVK 790
Query: 242 YFYRNL 247
F+ NL
Sbjct: 791 QFFLNL 796
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 16/234 (6%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 80
+ H V FS + ++A+ S DK +KIW + G+ T H ++ +++
Sbjct: 657 LEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNS 716
Query: 81 SR--LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
S LL +GS D LK+W+L+ +C T+ GH+N V C F+P L+ S S D ++++W
Sbjct: 717 SHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Query: 139 DVRTGKCLKTLPAHS------DP-------VSAVHFNRDGSLIVSSSYDGLCRIWDTASG 185
D + K++ DP V ++ DG+ I+ ++ + + ++D +
Sbjct: 777 DATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIF-LFDIHTS 835
Query: 186 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239
L + + + + FSP + A ++LW++ + C L+
Sbjct: 836 GLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLS 889
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISD----- 74
T+ GHT +V+ +FSP+ + LAS SAD +K+W A K+I+ + L + D
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDM 803
Query: 75 ------VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 128
+WS+D ++ + +K +SG + GH + + C+F+PQ++L V
Sbjct: 804 EVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVV 863
Query: 129 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA----- 183
V +W+ + + H V V F+ DGS ++SS D R+W+T
Sbjct: 864 ALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKN 923
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
S LK +D V F N +LA L+L + +
Sbjct: 924 SAVMLKQEVD--------VVFQENEVMVLAVDHIRRLQLINGR 958
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 11/177 (6%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
L GH + V + N L S S D +K+W G EK H+ + S D+
Sbjct: 1046 LRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
S S DKT KIW L L+GH+ V C F+ S L+ +G + +RIW+V
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSN 1164
Query: 143 GKCLKTLPAHSDPVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
G+ L S+ +A H F+ DG +++S+ G + W+ +G+ +T
Sbjct: 1165 GELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTF 1219
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
VS SP+ +++A + I+I + + ++ HK + + +++D + L+S SD
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD 1029
Query: 90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL 149
D +++W KC+ L+GH V S L+ S SFD +V++W++ TG K
Sbjct: 1030 DAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDF 1087
Query: 150 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
H V + + D + S+S D +IW
Sbjct: 1088 VCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 87/200 (43%), Gaps = 8/200 (4%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL 84
GH V V FSP+G +SS D+ I++W K K + DV + + ++
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET--KKVCKNSAVMLKQEVDVVFQENEVMV 943
Query: 85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK 144
++ + L++ +G+ + V CC +P I G + ++ I ++ +
Sbjct: 944 LAVDHIRRLQLINGRTGQIDYLTEAQ---VSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 145 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 204
++ H V + F D ++SSS D ++W+ +C+ + V +
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI--FLRGHQETVKDFRL 1058
Query: 205 SPNGKYILAATLDNTLKLWD 224
N + +L+ + D T+K+W+
Sbjct: 1059 LKNSR-LLSWSFDGTVKVWN 1077
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSRLL 84
H V S S + +S+SADK KIW ++D + GH + A+S DS LL
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIW-SFDLLLPLHELRGHNGCVRCSAFSVDSTLL 1148
Query: 85 VSGSDDKTLKIWELSSGKCL--------KTLKGHSNYVFCCNFNPQSNLIVS-GSFDESV 135
+G D+ ++IW +S+G+ L + H +V F+P +++S G + +
Sbjct: 1149 ATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGY---I 1205
Query: 136 RIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
+ W+V TG+ +T + + +H + D V+ G+ I T
Sbjct: 1206 KWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQT 1252
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 128/262 (48%), Gaps = 60/262 (22%)
Query: 18 VLKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWG------AYDGKFEKTISGHK 69
VLK T+ HT V+++ +P N + + S+S DK I +W AY G ++ ++GH
Sbjct: 373 VLKGTMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAY-GVAQRRLTGHS 430
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSS----------------------------- 100
+ DV SSD + +SGS D L++W+L++
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 101 ------------GKCLKTL----KGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVRT 142
G+C T+ +GH ++V C F+P + IVS S+D++V++W++
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 143 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 202
K TL H+ VS V + DGSL S DG+ +WD A G+ L +L + N + +
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL--EANSVIHAL 608
Query: 203 KFSPNGKYILAATLDNTLKLWD 224
FSPN +Y L A ++ +K+WD
Sbjct: 609 CFSPN-RYWLCAATEHGIKIWD 629
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 27/225 (12%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----GHKLGISDVAWS 78
GHTK V SV FS + + S+S D+ IK+W G+ + TIS GH+ +S V +S
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFS 526
Query: 79 SDS--RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
++ +VS S DKT+K+W LS+ K TL GH+ YV +P +L SG D V
Sbjct: 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL----- 191
+WD+ GK L +L A+S + A+ F+ + + +++ G+ +IWD S ++ L
Sbjct: 587 LWDLAEGKKLYSLEANS-VIHALCFSPNRYWLCAATEHGI-KIWDLESKSIVEDLKVDLK 644
Query: 192 -----IDDDNPPVSFVK--------FSPNGKYILAATLDNTLKLW 223
D+ P + K +S +G + + D +++W
Sbjct: 645 AEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 101 GKCLK-TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIW-----DVRTGKCLKTLPAH 152
G LK T++ H++ V P N +IVS S D+S+ +W D G + L H
Sbjct: 371 GLVLKGTMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH 429
Query: 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
S V V + DG +S S+DG R+WD A+G + + +S V FS + + I+
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS-VAFSLDNRQIV 488
Query: 213 AATLDNTLKLWDS 225
+A+ D T+KLW++
Sbjct: 489 SASRDRTIKLWNT 501
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 21/141 (14%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
L+ TLAGHT VS+V SP+G AS D ++ +W +GK ++ + + I + +S
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFS 611
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLK-----------------GHSNYVFCCNFN- 120
+ R + + + +KIW+L S ++ LK ++C + N
Sbjct: 612 PN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670
Query: 121 -PQSNLIVSGSFDESVRIWDV 140
+ + SG D +R+W +
Sbjct: 671 SADGSTLFSGYTDGVIRVWGI 691
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 93/162 (57%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
+++L K + S+ +SP+G++LAS + D +I I+ GK T+ GH + I + +S
Sbjct: 157 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 216
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
DS+LLV+ SDD +KI+++ TL GH+++V F P VS S D+SV++WD
Sbjct: 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
V T C+ T H D V V +N +GS IVS D I+D
Sbjct: 277 VGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 106/193 (54%), Gaps = 1/193 (0%)
Query: 32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK 91
++ FSP+ ++LA+ + + I+G GK E ++ I +A+S D + L SG+ D
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186
Query: 92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA 151
+ I+++++GK L TL+GH+ + F+P S L+V+ S D ++I+DV+ TL
Sbjct: 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246
Query: 152 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 211
H+ V V F D + VSSS D ++WD + C+ T D + V VK++ NG I
Sbjct: 247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD-QVWGVKYNGNGSKI 305
Query: 212 LAATLDNTLKLWD 224
++ D + ++D
Sbjct: 306 VSVGDDQEIHIYD 318
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 91/173 (52%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
L+++L GH V SV S ASSS D I++W +GK K+I + +A+S
Sbjct: 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
DS+ L +G+ + I+ + SGK +L ++ ++P + SG+ D + I+
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
D+ TGK L TL H+ P+ ++ F+ D L+V++S DG +I+D TL
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 108/207 (52%), Gaps = 7/207 (3%)
Query: 26 HTKAVSSVKFS----PNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 79
H A+ SV + N E + + S D L+K+W D + + ++ GH+LG+ V S
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
+ S S D +++W+L +GK +K++ + F+P S + +G+ V I+
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
V +GK +L + ++ ++ DG + S + DG+ I+D A+G+ L TL + P+
Sbjct: 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI 209
Query: 200 SFVKFSPNGKYILAATLDNTLKLWDSK 226
+ FSP+ + ++ A+ D +K++D +
Sbjct: 210 RSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
L TL GH + S+ FSP+ + L ++S D IKI+ T+SGH + +VA+
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
D VS S DK++K+W++ + C+ T H + V+ +N + IVS D+ + I+
Sbjct: 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Query: 139 D 139
D
Sbjct: 318 D 318
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 19 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 72
L+ TL GH V+ + +P + + S+S DK I +W G ++ + GH +
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 73 SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 132
SDV SSD + +SGS D TL++W+L++G + GH+ V F+ + IVSGS D
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 133 ESVRIWDVRTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 188
+++++W+ G C T+ +HS+ VS V F N +IVS +D L ++W+ A+ + L
Sbjct: 150 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 207
Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
KT ++ V SP+G + D LWD
Sbjct: 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 81
GHTK V SV FS + + S S DK IK+W K+ H +S V +S +S
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 82 R--LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
++VS DK +K+W L++ K GH+ Y+ +P +L SG D +WD
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------GQCLKTL 191
+ GK L TL D ++A+ F+ + + +++ + +IWD + + T
Sbjct: 244 LNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSI-KIWDLEGKIIVDELKQEVISTS 301
Query: 192 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229
+ P + + +S +G+ + A DN +++W + T
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
LK GHT +++V SP+G AS D +W +GK T+ G + I+ + +S
Sbjct: 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFS 265
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ---------SNLIVSG 129
+ R + + ++KIW+L + LK PQ + +G
Sbjct: 266 PN-RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324
Query: 130 SFDESVRIWDVRTG 143
D VR+W V G
Sbjct: 325 YTDNLVRVWQVTIG 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 19 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 72
L+ TL GH V+ + +P + + S+S DK I +W G ++ + GH +
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 73 SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 132
SDV SSD + +SGS D TL++W+L++G + GH+ V F+ + IVSGS D
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 133 ESVRIWDVRTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 188
+++++W+ G C T+ +HS+ VS V F N +IVS +D L ++W+ A+ + L
Sbjct: 127 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 184
Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
KT ++ V SP+G + D LWD
Sbjct: 185 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 81
GHTK V SV FS + + S S DK IK+W K+ H +S V +S +S
Sbjct: 101 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160
Query: 82 R--LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
++VS DK +K+W L++ K GH+ Y+ +P +L SG D +WD
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------GQCLKTL 191
+ GK L TL D ++A+ F+ + + +++ + +IWD + + T
Sbjct: 221 LNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSI-KIWDLEGKIIVDELKQEVISTS 278
Query: 192 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229
+ P + + +S +G+ + A DN +++W + T
Sbjct: 279 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 316
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
LK GHT +++V SP+G AS D +W +GK T+ G + I+ + +S
Sbjct: 184 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFS 242
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ---------SNLIVSG 129
+ R + + ++KIW+L + LK PQ + +G
Sbjct: 243 PN-RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301
Query: 130 SFDESVRIWDVRTG 143
D VR+W V G
Sbjct: 302 YTDNLVRVWQVTIG 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18 VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
VL+ TL GH V+S+ S PN L S+S DK + W D KF ++ GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
+ D ++D +S S DKTL++W++++G+ + GH + V + + ++++I+SG
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
S D+++++W ++ G+CL TL H+D VS V + D I+S+ D + + W+
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
Q I N ++ + SP+G I +A D + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 24/216 (11%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------AWS 78
GH V SV + S S DK IK+W G+ T+ GH +S V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
DS ++S +DK +K W L+ + GH++ + +P LI S D + +W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
++ K + TL A D V ++ F+ + + +++ G+ +++ + L+DD P
Sbjct: 224 NLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDP----QYLVDDLRPE 277
Query: 199 VS-----------FVKFSPNGKYILAATLDNTLKLW 223
+ + +S +G+ + A DN +++W
Sbjct: 278 FAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 22/92 (23%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSA--------------DKLIKIWGAYDGKFEKTIS 66
+TL+ + V S+ FSPN WLA+++A D L + Y E
Sbjct: 232 YTLSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEP--- 287
Query: 67 GHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98
H + + AWS+D + L +G D +++W++
Sbjct: 288 -HAVSL---AWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18 VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
VL+ TL GH V+S+ S PN L S+S DK + W D KF ++ GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
+ D ++D +S S DKTL++W++++G+ + GH + V + + ++++I+SG
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
S D+++++W ++ G+CL TL H+D VS V + D I+S+ D + + W+
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
Q I N ++ + SP+G I +A D + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 24/218 (11%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------A 76
GH V SV + S S DK IK+W G+ T+ GH +S V
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
DS ++S +DK +K W L+ + GH++ + +P LI S D +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
+W++ K + TL A D V ++ F+ + + +++ G+ +++ + L+DD
Sbjct: 222 LWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDP----QYLVDDLR 275
Query: 197 PPVS-----------FVKFSPNGKYILAATLDNTLKLW 223
P + + +S +G+ + A DN +++W
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 18/90 (20%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTISGH 68
+TL+ + V S+ FSPN WLA+++A IK++ + G + K H
Sbjct: 232 YTLSAQDE-VFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAG-YSKAAEPH 288
Query: 69 KLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98
+ + AWS+D + L +G D +++W++
Sbjct: 289 AVSL---AWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18 VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
VL+ TL GH V+S+ S PN L S+S DK + W D KF ++ GH
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 59
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
+ D ++D +S S DKTL++W++++G+ + GH + V + + ++++I+SG
Sbjct: 60 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
S D+++++W ++ G+CL TL H+D VS V + D I+S+ D + + W+
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
Q I N ++ + SP+G I +A D + LW+
Sbjct: 179 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 24/218 (11%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------A 76
GH V SV + S S DK IK+W G+ T+ GH +S V
Sbjct: 97 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEK 155
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
DS ++S +DK +K W L+ + GH++ + +P LI S D +
Sbjct: 156 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 215
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
+W++ K + TL A D V ++ F+ + + +++ G+ +++ + L+DD
Sbjct: 216 LWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDP----QYLVDDLR 269
Query: 197 PPVS-----------FVKFSPNGKYILAATLDNTLKLW 223
P + + +S +G+ + A DN +++W
Sbjct: 270 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 18/90 (20%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTISGH 68
+TL+ + V S+ FSPN WLA+++A IK++ + G + K H
Sbjct: 226 YTLSAQDE-VFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAG-YSKAAEPH 282
Query: 69 KLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98
+ + AWS+D + L +G D +++W++
Sbjct: 283 AVSL---AWSADGQTLFAGYTDNVIRVWQV 309
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18 VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
VL+ TL GH V+S+ S PN L S+S DK + W D KF ++ GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
+ D ++D +S S DKTL++W++++G+ + GH + V + + ++++I+SG
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
S D+++++W ++ G+CL TL H+D VS V + D I+S+ D + + W+
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
Q I N ++ + SP+G I +A D + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 24/218 (11%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------A 76
GH V SV + S S DK IK+W G+ T+ GH +S V
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
DS ++S +DK +K W L+ + GH++ + +P LI S D +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
+W++ K + TL A D V ++ F+ + + +++ G+ +++ + L+DD
Sbjct: 222 LWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDP----QYLVDDLR 275
Query: 197 PPVS-----------FVKFSPNGKYILAATLDNTLKLW 223
P + + +S +G+ + A DN +++W
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 18/90 (20%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTISGH 68
+TL+ + V S+ FSPN WLA+++A IK++ + G + K H
Sbjct: 232 YTLSAQDE-VFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAG-YSKAAEPH 288
Query: 69 KLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98
+ + AWS+D + L +G D +++W++
Sbjct: 289 AVSL---AWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18 VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
VL+ TL GH V+S+ S PN L S+S DK + W D KF ++ GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
+ D ++D +S S DKTL++W++++G+ + GH + V + + ++++I+SG
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
S D+++++W ++ G+CL TL H+D VS V + D I+S+ D + + W+
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
Q I N ++ + SP+G I +A D + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 24/218 (11%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------A 76
GH V SV + S S DK IK+W G+ T+ GH +S V
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
DS ++S +DK +K W L+ + GH++ + +P LI S D +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
+W++ K + TL A D V ++ F+ + + +++ G+ +++ + L+DD
Sbjct: 222 LWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDP----QYLVDDLR 275
Query: 197 PPVS-----------FVKFSPNGKYILAATLDNTLKLW 223
P + + +S +G+ + A DN +++W
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 18/89 (20%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTISGH 68
+TL+ + V S+ FSPN WLA+++A IK++ + G + K H
Sbjct: 232 YTLSAQDE-VFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAG-YSKAAEPH 288
Query: 69 KLGISDVAWSSDSRLLVSGSDDKTLKIWE 97
+ + AWS+D + L +G D +++W+
Sbjct: 289 AVSL---AWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 18/221 (8%)
Query: 18 VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
VL+ TL GH V+S+ S PN L S+S DK + W D KF ++ GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
+ D ++D +S S DKTL++W++++G+ + GH + V + + +++ I+SG
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
S D+++++W ++ G+CL TL H+D VS V + D I+S+ D + W+
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
Q I N ++ + SP+G I +A D + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 24/218 (11%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------A 76
GH V SV + S S DK IK+W G+ T+ GH +S V
Sbjct: 103 FVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
DS ++S +DK +K W L+ + GH++ + +P LI S D +
Sbjct: 162 ADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIX 221
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
+W++ K TL A D V ++ F+ + + +++ G+ +++ + L+DD
Sbjct: 222 LWNLAAKKAXYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDP----QYLVDDLR 275
Query: 197 PPVS-----------FVKFSPNGKYILAATLDNTLKLW 223
P + + +S +G+ + A DN +++W
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 18/93 (19%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTISGH 68
+TL+ + V S+ FSPN WLA+++A IK++ + G + K H
Sbjct: 232 YTLSAQDE-VFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAG-YSKAAEPH 288
Query: 69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101
+ + AWS+D + L +G D +++W++ +
Sbjct: 289 AVSL---AWSADGQTLFAGYTDNVIRVWQVXTA 318
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 29/233 (12%)
Query: 18 VLKFTLAGHTKAVSSV------KFSPNGEWLASSSADKLIKIWGAYD----GKF---EKT 64
V + L GH+ V+S+ K + + L S S DK + IW Y+ G F K
Sbjct: 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA 71
Query: 65 ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN 124
++GH +SD+A S ++ +S S DKTL++W+L +G K GH + V+ F+P +
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 125 LIVSGSFDESVRIWDVRTGKCL---KTLPAHSDPVSAVHF----------NRDGSLIVSS 171
I+S + +++W++ G+C HSD VS V + S
Sbjct: 132 QILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
+DG ++W+T ++ V+ + SPNGKYI D L +WD
Sbjct: 191 GWDGRLKVWNT--NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 55/172 (31%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
L GH VS + S + SSS DK +++W G K GH+ + VA+S D+R
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 83 LLVSGSDDKTLKIWELSSGKCL---KTLKGHSNYVFCCNFNP------------------ 121
++S ++ +K+W + G+C + HS++V C ++P
Sbjct: 132 QILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 122 ----------------------QSNL-----------IVSGSFDESVRIWDV 140
+SN+ I +G D+ + IWD+
Sbjct: 191 GWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
+ +++T H V+ + SPNG+++A+ DK + IW + + + I+ +A
Sbjct: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA 262
Query: 77 WSSDSRLLVSGSDDKTLKIWEL 98
++ + + G+ D+ +KI+ L
Sbjct: 263 FNPKLQWVAVGT-DQGVKIFNL 283
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 149 LPAHSDPVSAV------HFNRDGSLIVSSSYDGLCRIWDTASGQ------CLKTLIDDDN 196
L HSD V+++ N D +++S S D IW + + N
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229
VS + S + ++++ D TL+LWD + T
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGT 109
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 32/231 (13%)
Query: 20 KFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
+ TL GH T ++ ++F N ++ + + DK+I+++ + + KF +SGH G+ + ++
Sbjct: 114 RTTLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL--IVSGSFDESVR 136
+LVSGS D+T+++W++ G C +GH++ V C + N+ IV+GS D ++
Sbjct: 172 HGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 137 IWDV-----------------------RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 173
+W + + L H V V + G+++VS SY
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288
Query: 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
D +WD A +CL L + S + + K ++A++D T+++WD
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCISASMDTTIRIWD 338
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 31/230 (13%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS--DVAWS 78
L+GH V ++K++ +G L S S D+ +++W G GH + D+
Sbjct: 156 LQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLK-----------------------TLKGHSNYVF 115
+ + +V+GS D TL +W+L + L+GH V
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 274
Query: 116 CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 175
+ N++VSGS+D ++ +WDV KCL L H+D + + ++ + +S+S D
Sbjct: 275 TVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
RIWD +G+ + TL V ++ S K++++A D +++ WD+
Sbjct: 333 TIRIWDLENGELMYTL-QGHTALVGLLRLSD--KFLVSAAADGSIRGWDA 379
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 50 LIKIWGAYDGKF---EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT 106
++K W Y+ KF T+ GH + D+ +++G+DDK +++++ + K L
Sbjct: 101 ILKNW--YNPKFVPQRTTLRGHMTSVITCLQFEDN-YVITGADDKMIRVYDSINKKFLLQ 157
Query: 107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF--NRD 164
L GH V+ + ++VSGS D +VR+WD++ G C H+ V + ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--------------------VKF 204
IV+ S D +W + ++ + P+ F
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 205 SPNGKYILAATLDNTLKLWD 224
S +G +++ + DNTL +WD
Sbjct: 277 SGHGNIVVSGSYDNTLIVWD 296
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 80
+ L+GHT + S + + S+S D I+IW +G+ T+ GH + + S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS-- 361
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 140
+ LVS + D +++ W+ ++ K H+N F N++VSGS + I+++
Sbjct: 362 DKFLVSAAADGSIRGWD-ANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNL 419
Query: 141 RTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDG 175
R+GK + + +D + +V+F + +L+ + DG
Sbjct: 420 RSGKLVHANILKDADQIWSVNF-KGKTLVAAVEKDG 454
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 26 HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKF--EKTISGHKLGISDVAWS 78
H V F+PNG+ +A D I+ DG + ++GHK S +
Sbjct: 107 HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYV 166
Query: 79 SDSRL-LVSGSDDKTLKIWELSSGKCLKTL-----KGHSNYVFCCNFNP-QSNLIVSGSF 131
D L++GS D+T +W++++G+ + GH+ V + N +N+ +SGS
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC 226
Query: 132 DESVRIWDVR-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 190
D +VR+WD+R T + ++T H +++V F DG + S DG CR++D +G L+
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 191 L------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
D++ P V+ V FS +G+ + A + +WD+
Sbjct: 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 18/219 (8%)
Query: 23 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKF-----EKTISGHKLGISDVA 76
L GH SS ++ P+ E L + S D+ +W G+ + SGH + ++
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 77 WSS-DSRLLVSGSDDKTLKIWELS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
+S ++ + +SGS D T+++W+L + + ++T GH + F P +GS D +
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272
Query: 135 VRIWDVRTGKCLKTLPAHSDP-------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
R++D+RTG L+ D V++V F+ G L+ + +G C +WDT +
Sbjct: 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM 332
Query: 188 ---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 223
L TL + +S + S +G + + D LK+W
Sbjct: 333 VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 63 KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
+T+ GH + + W+ + +VS S D L +W + + +K H +V C F P
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 123 SNLIVSGSFDESVRIWDV-----RTGK--CLKTLPAHSDPVSAVHFNRDG-SLIVSSSYD 174
+ G D + I+++ R G + L H S+ + D + +++ S D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 175 GLCRIWDTASGQCLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLWDSKVV 228
C +WD +GQ + ++ + P +S S N ++ + D T++LWD ++
Sbjct: 180 QTCVLWDVTTGQRI-SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 229 TPAI 232
+ A+
Sbjct: 239 SRAV 242
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 162
C +TL+GHS V+ ++ P+ N IVS S D + +W+ T + + H V F
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-----------KFSPNGK-Y 210
+G + D C I++ +S D N PVS V ++ P+ +
Sbjct: 118 PNGQSVACGGLDSACSIFNLSS-----QADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 211 ILAATLDNTLKLWD 224
++ + D T LWD
Sbjct: 173 LITGSGDQTCVLWD 186
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGHKLGI-SD 74
T GH ++SVKF P+G+ + S D +++ G E + ++L I +
Sbjct: 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS 303
Query: 75 VAWSSDSRLLVSGSDDKTLKIWELSSGKC---LKTLKG-HSNYVFCCNFNPQSNLIVSGS 130
VA+S RLL +G + +W+ + L TL+ H + C + + + +GS
Sbjct: 304 VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363
Query: 131 FDESVRIW 138
+D++++IW
Sbjct: 364 WDKNLKIW 371
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISDVAWSSDSRLLV 85
V+SV FS +G L + ++ +W + + + H+ IS + SSD L
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360
Query: 86 SGSDDKTLKIWELSSGK 102
+GS DK LKIW S +
Sbjct: 361 TGSWDKNLKIWAFSGHR 377
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
LAGHT +S +F + + + +SS D +W G+ T +GH + ++ + D+R
Sbjct: 150 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 208
Query: 83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
L VSG+ D + K+W++ G C +T GH + + F P N +GS D + R++D+R
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 268
Query: 143 GKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
+ L T +H + +++V F++ G L+++ D C +WD L DN V
Sbjct: 269 DQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RV 326
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
S + + +G + + D+ LK+W+
Sbjct: 327 SCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSRLLV 85
V + ++P+G ++A D + I+ +G + + ++GH +S + D++++
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 170
Query: 86 SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
S S D T +W++ +G+ T GH+ V + P + L VSG+ D S ++WDVR G C
Sbjct: 171 S-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 229
Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKF 204
+T H ++A+ F +G+ + S D CR++D + Q L T D+ ++ V F
Sbjct: 230 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 289
Query: 205 SPNGKYILAATLDNTLKLWDS 225
S +G+ +LA D +WD+
Sbjct: 290 SKSGRLLLAGYDDFNCNVWDA 310
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 55 GAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV 114
G + +T+ GH I + W +DSRLLVS S D L IW+ + + + S++V
Sbjct: 52 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 111
Query: 115 FCCNFNPQSNLIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 170
C + P N + G D I++++T + + L H+ +S F D + IV+
Sbjct: 112 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 170
Query: 171 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
SS D C +WD +GQ T +S + +P+ + ++ D + KLWD +
Sbjct: 171 SSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPDTRLFVSGACDASAKLWDVR 225
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
LAGHT +S +F + + + +SS D +W G+ T +GH + ++ + D+R
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
L VSG+ D + K+W++ G C +T GH + + F P N +GS D + R++D+R
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 143 GKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
+ L T +H + +++V F++ G L+++ D C +WD L DN V
Sbjct: 258 DQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RV 315
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
S + + +G + + D+ LK+W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSRLLV 85
V + ++P+G ++A D + I+ +G + + ++GH +S + D++++
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 86 SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
S S D T +W++ +G+ T GH+ V + P + L VSG+ D S ++WDVR G C
Sbjct: 160 S-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKF 204
+T H ++A+ F +G+ + S D CR++D + Q L T D+ ++ V F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 205 SPNGKYILAATLDNTLKLWDS 225
S +G+ +LA D +WD+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDA 299
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 55 GAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV 114
G + +T+ GH I + W +DSRLL+S S D L IW+ + + + S++V
Sbjct: 41 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 115 FCCNFNPQSNLIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 170
C + P N + G D I++++T + + L H+ +S F D + IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 171 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
SS D C +WD +GQ T +S + +P+ + ++ D + KLWD +
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPDTRLFVSGACDASAKLWDVR 214
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
LAGHT +S +F + + + +SS D +W G+ T +GH + ++ + D+R
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
L VSG+ D + K+W++ G C +T GH + + F P N +GS D + R++D+R
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 143 GKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
+ L T +H + +++V F++ G L+++ D C +WD L DN V
Sbjct: 258 DQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RV 315
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
S + + +G + + D+ LK+W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSRLLV 85
V + ++P+G ++A D + I+ +G + + ++GH +S + D++++
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 86 SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
S S D T +W++ +G+ T GH+ V + P + L VSG+ D S ++WDVR G C
Sbjct: 160 S-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKF 204
+T H ++A+ F +G+ + S D CR++D + Q L T D+ ++ V F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 205 SPNGKYILAATLDNTLKLWDS 225
S +G+ +LA D +WD+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDA 299
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 55 GAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV 114
G + +T+ GH I + W +DSRLL+S S D L IW+ + + + S++V
Sbjct: 41 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 115 FCCNFNPQSNLIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 170
C + P N + G D I++++T + + L H+ +S F D + IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 171 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
SS D C +WD +GQ T +S + +P+ + ++ D + KLWD +
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPDTRLFVSGACDASAKLWDVR 214
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
LAGHT +S +F + + + +SS D +W G+ T +GH + ++ + D+R
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
L VSG+ D + K+W++ G C +T GH + + F P N +GS D + R++D+R
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 143 GKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
+ L T +H + +++V F++ G L+++ D C +WD L DN V
Sbjct: 258 DQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RV 315
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
S + + +G + + D+ LK+W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSRLLV 85
V + ++P+G ++A D + I+ +G + + ++GH +S + D++++
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 86 SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
S S D T +W++ +G+ T GH+ V + P + L VSG+ D S ++WDVR G C
Sbjct: 160 S-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKF 204
+T H ++A+ F +G+ + S D CR++D + Q L T D+ ++ V F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 205 SPNGKYILAATLDNTLKLWDS 225
S +G+ +LA D +WD+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDA 299
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 55 GAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV 114
G + +T+ GH I + W +DSRLLVS S D L IW+ + + + S++V
Sbjct: 41 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 115 FCCNFNPQSNLIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 170
C + P N + G D I++++T + + L H+ +S F D + IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 171 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
SS D C +WD +GQ T +S + +P+ + ++ D + KLWD +
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPDTRLFVSGACDASAKLWDVR 214
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
LAGHT +S +F + + + +SS D +W G+ T +GH + ++ + D+R
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
L VSG+ D + K+W++ G C +T GH + + F P N +GS D + R++D+R
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 143 GKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
+ L T +H + +++V F++ G L+++ D C +WD L DN V
Sbjct: 258 DQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RV 315
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
S + + +G + + D+ LK+W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSRLLV 85
V + ++P+G ++A D + I+ +G + + ++GH +S + D++++
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 86 SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
S S D T +W++ +G+ T GH+ V + P + L VSG+ D S ++WDVR G C
Sbjct: 160 S-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKF 204
+T H ++A+ F +G+ + S D CR++D + Q L T D+ ++ V F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 205 SPNGKYILAATLDNTLKLWDS 225
S +G+ +LA D +WD+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDA 299
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 55 GAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV 114
G + +T+ GH I + W +DSRLLVS S D L IW+ + + + S++V
Sbjct: 41 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 115 FCCNFNPQSNLIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 170
C + P N + G D I++++T + + L H+ +S F D + IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 171 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
SS D C +WD +GQ T +S + +P+ + ++ D + KLWD +
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPDTRLFVSGACDASAKLWDVR 214
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 11/201 (5%)
Query: 33 VKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSD 89
+ ++P G LAS D+ I+IWG D K++ GH+ + VAWS L S S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 90 DKTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG---K 144
D T IW+ + +C+ TL+GH N V + P NL+ + S D+SV +W+V +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 145 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFV 202
C+ L +H+ V V ++ L+ S+SYD +++ C TL + V +
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSL 200
Query: 203 KFSPNGKYILAATLDNTLKLW 223
F P+G+ + + + D T+++W
Sbjct: 201 AFDPSGQRLASCSDDRTVRIW 221
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 8/172 (4%)
Query: 17 YVLKFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS 73
++ K L+ GH + V V +SP G +LAS+S D IW FE T+ GH+ +
Sbjct: 50 WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK 109
Query: 74 DVAWSSDSRLLVSGSDDKTLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 130
VAW+ LL + S DK++ +WE+ +C+ L H+ V ++P L+ S S
Sbjct: 110 SVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS 169
Query: 131 FDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
+D++V+++ C TL H V ++ F+ G + S S D RIW
Sbjct: 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 26/148 (17%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------- 63
+V TL GH V S+ F P+G+ LAS S D+ ++IW Y E+
Sbjct: 184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243
Query: 64 --TISG-HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK---------CLKTLKGHS 111
T+SG H I D+AW + L + D +++++ + HS
Sbjct: 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHS 303
Query: 112 NYVFCCNFNP-QSNLIVSGSFDESVRIW 138
V C +NP + L+ S S D V W
Sbjct: 304 QDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 119 FNPQSNLIVSGSFDESVRIWDVRTGK--CLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDG 175
+NP L+ S D +RIW C L H V V ++ G+ + S+S+D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 176 LCRIWDTASG--QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
IW +C+ TL +N V V ++P+G + + D ++ +W+
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENE-VKSVAWAPSGNLLATCSRDKSVWVWE 133
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI--SDVAW 77
K ++A HT +S+ F+ + + ++S D +W G+ ++ GH + D+A
Sbjct: 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
S VSG DK +W++ SG+C++ + H + V + P + SGS D + R+
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 138 WDVRTGKCLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
+D+R + + S S+V F+ G L+ + D +WD G + L +
Sbjct: 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326
Query: 196 NPPVSFVKFSPNGKYILAATLDNTLKLW 223
N VS ++ SP+G + + D+TL++W
Sbjct: 327 N-RVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 9/204 (4%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVAWSSDSRL 83
V + ++P+G +A D ++ K E K+++ H +S ++++
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 84 LVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVR 141
+++ S D T +W++ SG+ L++ GH V C + P N VSG D+ +WD+R
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVS 200
+G+C++ H V++V + G S S D CR++D + + + + S
Sbjct: 229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGAS 288
Query: 201 FVKFSPNGKYILAATLDNTLKLWD 224
V FS +G+ + A D T+ +WD
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWD 312
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 51/224 (22%)
Query: 51 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE------------- 97
++ G + K +T+ GH + + W D R +VS S D + +W+
Sbjct: 46 VEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP 105
Query: 98 ---------------LSSG----KC----------------LKTLKGHSNYVFCCNFNPQ 122
++ G KC K++ H+NY+ C+F
Sbjct: 106 CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 165
Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIW 180
I++ S D + +WDV +G+ L++ H V + + G+ VS D +W
Sbjct: 166 DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
D SGQC++ + V+ V++ P+G + + D T +L+D
Sbjct: 226 DMRSGQCVQAF-ETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 31/230 (13%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS--DVAWS 78
L+GH V ++K++ +G L S S D+ +++W G GH + D+
Sbjct: 156 LQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLK-----------------------TLKGHSNYVF 115
+ + +V+GS D TL +W+L + L+GH V
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR 274
Query: 116 CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 175
+ N++VSGS+D ++ +WDV KCL L H+D + + ++ + +S+S D
Sbjct: 275 TVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
RIWD +G+ TL V ++ S K++++A D +++ WD+
Sbjct: 333 TIRIWDLENGELXYTL-QGHTALVGLLRLSD--KFLVSAAADGSIRGWDA 379
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 50 LIKIWGAYDGKF---EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT 106
++K W Y+ KF T+ GH + D+ +++G+DDK +++++ + K L
Sbjct: 101 ILKNW--YNPKFVPQRTTLRGHXTSVITCLQFEDN-YVITGADDKXIRVYDSINKKFLLQ 157
Query: 107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF--NRD 164
L GH V+ + ++VSGS D +VR+WD++ G C H+ V + ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--------------------VKF 204
IV+ S D +W + ++ + P+ F
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 205 SPNGKYILAATLDNTLKLWD 224
S +G +++ + DNTL +WD
Sbjct: 277 SGHGNIVVSGSYDNTLIVWD 296
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 80
+ L+GHT + S + + S+S D I+IW +G+ T+ GH + + S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS-- 361
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 140
+ LVS + D +++ W+ ++ K H+N F N++VSGS + I+++
Sbjct: 362 DKFLVSAAADGSIRGWD-ANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNL 419
Query: 141 RTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDG 175
R+GK + + +D + +V+F + +L+ + DG
Sbjct: 420 RSGKLVHANILKDADQIWSVNF-KGKTLVAAVEKDG 454
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 6/201 (2%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
V + KF W+ S D I+++ G+ H I +A ++SGSD
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 90 DKTLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLK 147
D T+K+W + L +T +GH ++V C FNP+ + SG D +V++W +
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 148 TLPAHSDP-VSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 204
TL + V+ V + D ++++S D +IWD + C+ TL + VSF F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVF 236
Query: 205 SPNGKYILAATLDNTLKLWDS 225
P I++ + D TLK+W+S
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWS-SD 80
H + S+ P ++ S S D +K+W + E+T GH+ + VA++ D
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLK-GHSNYVFCCNFNPQSN--LIVSGSFDESVRI 137
SG D+T+K+W L TL G V ++ P + +++ S D +++I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
WD +T C+ TL H VS F+ +I+S S DG +IW++++ + KTL
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 17 YVLKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGIS 73
+ L+ T GH V V F+P + AS D+ +K+W G F T +G + G++
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVN 188
Query: 74 DVAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 131
V + D +++ SDD T+KIW+ + C+ TL+GH + V F+P +I+SGS
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 132 DESVRIWDVRTGKCLKTL 149
D +++IW+ T K KTL
Sbjct: 249 DGTLKIWNSSTYKVEKTL 266
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW 77
+K T + + V + F P W+ ++ +++W Y+ + E ++I + + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWN-YETQVEVRSIQVTETPVRAGKF 63
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
+ ++ GSDD ++++ ++G+ + + H +Y+ +P ++SGS D +V++
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 138 WDVRTGKCL-KTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
W+ L +T H V V FN +D S S D ++W TL
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 196 NPPVSFVKFS--PNGKYILAATLDNTLKLWDSK 226
V++V + P+ Y++ A+ D T+K+WD +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 21 FTLA-GHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 77
FTL G + V+ V + P + ++ ++S D IKIW T+ GH +S +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESV 135
+++SGS+D TLKIW S+ K KTL +C +P + N I SG FD
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGF 295
Query: 136 RI 137
+
Sbjct: 296 TV 297
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 152
+++W + +++++ V F + N I+ GS D +R+++ TG+ + AH
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
D + ++ + ++S S D ++W+ + L+ + V V F+P
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 213 AAT-LDNTLKLWDSKVVTPAIICST 236
A+ LD T+K+W TP +T
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTT 181
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 6/201 (2%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
V + KF W+ S D I+++ G+ H I +A ++SGSD
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 90 DKTLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLK 147
D T+K+W + L +T +GH ++V C FNP+ + SG D +V++W +
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 148 TLPAHSDP-VSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 204
TL + V+ V + D ++++S D +IWD + C+ TL + VSF F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVF 236
Query: 205 SPNGKYILAATLDNTLKLWDS 225
P I++ + D TLK+W+S
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWS-SD 80
H + S+ P ++ S S D +K+W + E+T GH+ + VA++ D
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLK-GHSNYVFCCNFNPQSN--LIVSGSFDESVRI 137
SG D+T+K+W L TL G V ++ P + +++ S D +++I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
WD +T C+ TL H VS F+ +I+S S DG +IW++++ + KTL
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 17 YVLKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGIS 73
+ L+ T GH V V F+P + AS D+ +K+W G F T +G + G++
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVN 188
Query: 74 DVAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 131
V + D +++ SDD T+KIW+ + C+ TL+GH + V F+P +I+SGS
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 132 DESVRIWDVRTGKCLKTL 149
D +++IW+ T K KTL
Sbjct: 249 DGTLKIWNSSTYKVEKTL 266
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW 77
+K T + + V + F P W+ ++ +++W Y+ + E ++I + + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWN-YETQVEVRSIQVTETPVRAGKF 63
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
+ ++ GSDD ++++ ++G+ + + H +Y+ +P ++SGS D +V++
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 138 WDVRTGKCL-KTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
W+ L +T H V V FN +D S S D ++W TL
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 196 NPPVSFVKFS--PNGKYILAATLDNTLKLWDSK 226
V++V + P+ Y++ A+ D T+K+WD +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 21 FTLA-GHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 77
FTL G + V+ V + P + ++ ++S D IKIW T+ GH +S +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESV 135
+++SGS+D TLKIW S+ K KTL +C +P + N I SG FD
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGF 295
Query: 136 RI 137
+
Sbjct: 296 TV 297
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 152
+++W + +++++ V F + N I+ GS D +R+++ TG+ + AH
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
D + ++ + ++S S D ++W+ + L+ + V V F+P
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 213 AAT-LDNTLKLWDSKVVTPAIICST 236
A+ LD T+K+W TP +T
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTT 181
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 6/201 (2%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
V + KF W+ S D I+++ G+ H I +A ++SGSD
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 90 DKTLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLK 147
D T+K+W + L +T +GH ++V C FNP+ + SG D +V++W +
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 148 TLPAHSDP-VSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 204
TL + V+ V + D ++++S D +IWD + C+ TL + VSF F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVF 236
Query: 205 SPNGKYILAATLDNTLKLWDS 225
P I++ + D TLK+W+S
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWS-SD 80
H + S+ P ++ S S D +K+W + E+T GH+ + VA++ D
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLK-GHSNYVFCCNFNPQSN--LIVSGSFDESVRI 137
SG D+T+K+W L TL G V ++ P + +++ S D +++I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
WD +T C+ TL H VS F+ +I+S S DG +IW++++ + KTL
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 17 YVLKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGIS 73
+ L+ T GH V V F+P + AS D+ +K+W G F T +G + G++
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVN 188
Query: 74 DVAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 131
V + D +++ SDD T+KIW+ + C+ TL+GH + V F+P +I+SGS
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 132 DESVRIWDVRTGKCLKTL 149
D +++IW+ T K KTL
Sbjct: 249 DGTLKIWNSSTYKVEKTL 266
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW 77
+K T + + V + F P W+ ++ +++W Y+ + E ++I + + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWN-YETQVEVRSIQVTETPVRAGKF 63
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
+ ++ GSDD ++++ ++G+ + + H +Y+ +P ++SGS D +V++
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 138 WDVRTGKCL-KTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
W+ L +T H V V FN +D S S D ++W TL
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 196 NPPVSFVKFS--PNGKYILAATLDNTLKLWDSK 226
V++V + P+ Y++ A+ D T+K+WD +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 21 FTLA-GHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 77
FTL G + V+ V + P + ++ ++S D IKIW T+ GH +S +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESV 135
+++SGS+D TLKIW S+ K KTL +C +P + N I SG FD
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGF 295
Query: 136 RI 137
+
Sbjct: 296 TV 297
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 152
+++W + +++++ V F + N I+ GS D +R+++ TG+ + AH
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
D + ++ + ++S S D ++W+ + L+ + V V F+P
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 213 AAT-LDNTLKLWDSKVVTPAIICST 236
A+ LD T+K+W TP +T
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTT 181
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWG---AYDGKFE----KTISGHKLGISDVAW 77
H KA+ SV + P+ LA+ S D + IW + D FE I GH+ + VAW
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 78 SSDSRLLVSGSDDKTLKIWELSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133
S+D L + S DK++ IWE +C+ L+ HS V ++P L+ S S+D+
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 134 SVRIWDVRTG--KCLKTLPAHSDPVSAVHFNRDGSL--IVSSSYDGLCRIW--------D 181
+VRIW +C+ L H V + F++ + + S S D R+W D
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS-----KVVTPAIICST 236
C L D V V + NG I + D L +++ KV +C
Sbjct: 236 QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG 294
Query: 237 PLNLN 241
+N
Sbjct: 295 VYEIN 299
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWS 78
+ GH V V +S +G +LA+ S DK + IW + E + H + V W
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 79 SDSRLLVSGSDDKTLKIWE--LSSGKCLKTLKGHSNYVFCCNFNPQSNL--IVSGSFDES 134
LL S S D T++IW+ +C+ L GH V+ +F+ + + SGS D +
Sbjct: 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222
Query: 135 VRIW--------DVRTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 185
VR+W D + C LP H V V + +G LI S DG+ +++ G
Sbjct: 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281
Query: 186 QC---LKTLIDDDNPPVSFVKF-SPNGKYILAATLDNTL 220
+ K + ++ VK+ NGK ILA D+ +
Sbjct: 282 EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 66 SGHKLGISDVAWSSDSRLLVSGSDDKTLKIW--ELSSGKC-----LKTLKGHSNYVFCCN 118
+ HK I VAW + LL +GS D T+ IW E S+ + L ++GH N V
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 119 FNPQSNLIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 174
++ + + S D+SV IW+ +C+ L HS V V ++ +L+ SSSYD
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 175 GLCRIW 180
RIW
Sbjct: 175 DTVRIW 180
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 12/152 (7%)
Query: 98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR----TGKCLKTLPAHS 153
++S +K+LK + ++ +F+ ++ +GS D +++ V+ T + AH
Sbjct: 1 MASINLIKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK 58
Query: 154 DPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQCLKTLIDDDNPPVSFVKFSPN 207
+ +V + SL+ + S+D IW D L +I+ V V +S +
Sbjct: 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 208 GKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239
G Y+ + D ++ +W++ C + L
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQ 150
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 6/201 (2%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
V + KF W+ S D I+++ G+ H I +A ++SGSD
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 90 DKTLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLK 147
D T+K+W + L +T +GH ++V C FNP+ + SG D +V++W +
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 148 TLPAHSDP-VSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 204
TL + V+ V + D ++++S D +IWD + C+ TL + VSF F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVF 236
Query: 205 SPNGKYILAATLDNTLKLWDS 225
P I++ + D TLK+W+S
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWS-SD 80
H + S+ P ++ S S D +K+W + E+T GH+ + VA++ D
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLK-GHSNYVFCCNFNPQSN--LIVSGSFDESVRI 137
SG D+T+K+W L TL G V ++ P + +++ S D +++I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
WD +T C+ TL H VS F+ +I+S S DG +IW++++ + KTL
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 17 YVLKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGIS 73
+ L+ T GH V V F+P + AS D+ +K+W G F T +G + G++
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVN 188
Query: 74 DVAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 131
V + D +++ SDD T+KIW+ + C+ TL+GH + V F+P +I+SGS
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 132 DESVRIWDVRTGKCLKTL 149
D +++IW+ T K KTL
Sbjct: 249 DGTLKIWNSSTYKVEKTL 266
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW 77
+K T + + V + F P W+ ++ ++IW Y+ + E ++I + + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWN-YETQVEVRSIQVTETPVRAGKF 63
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
+ ++ GSDD ++++ ++G+ + + H +Y+ +P ++SGS D +V++
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 138 WDVRTGKCL-KTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
W+ L +T H V V FN +D S S D ++W TL
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 196 NPPVSFVKFS--PNGKYILAATLDNTLKLWDSK 226
V++V + P+ Y++ A+ D T+K+WD +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 152
++IW + +++++ V F + N I+ GS D +R+++ TG+ + AH
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
D + ++ + ++S S D ++W+ + L+ + V V F+P
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 213 AAT-LDNTLKLWDSKVVTPAIICST 236
A+ LD T+K+W TP +T
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTT 181
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 16/201 (7%)
Query: 21 FTLA-GHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 77
FTL G + V+ V + P + ++ ++S D IKIW T+ GH +S +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESV 135
+++SGS+D TLKIW S+ K KTL +C +P + N I SG FD
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGF 295
Query: 136 RIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-----IWDTASGQCLKT 190
+ + + +L DPV + ++ + S + + R D K
Sbjct: 296 TVLSLGNDEPTLSL----DPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKE 351
Query: 191 LIDDDNPPVSFVKFSPNGKYI 211
L D P S SPNG+++
Sbjct: 352 LGSVDVFPQSLAH-SPNGRFV 371
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAW 77
TL+GH++ V ++++P+G LAS D L+ +W + G+ +T + H+ + VAW
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 78 SS-DSRLLVS--GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FD 132
S +L + G+ D+ ++IW + SG CL + HS V ++P ++SG
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 343
Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
+ IW T + L H+ V ++ + DG+ + S++ D R+W
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 9/176 (5%)
Query: 64 TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGHSNYVFCCNF 119
T+SGH + + W+ D R L SG +D + +W + G+ L+T H V +
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 120 NP-QSNLIVSG--SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG 175
P QSN++ +G + D +RIW+V +G CL + AHS S + LI +
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 344
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA 231
IW + + L + +S SP+G + +A D TL+LW + PA
Sbjct: 345 QLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVASAAADETLRLWRCFELDPA 399
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 48 DKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK 105
D + +W A G + + + G IS VAW + L G+ +++W++ K L+
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRD 164
+ HS V ++N S ++ SGS + DVR + + TL HS V + + D
Sbjct: 184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241
Query: 165 GSLIVSSSYDGLCRIWDTASGQC----LKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 217
G + S D L +W +A G+ L+T V V + P +LA T D
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSD 300
Query: 218 NTLKLWD 224
+++W+
Sbjct: 301 RHIRIWN 307
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 58
L GHT V S+ SP+G +AS++AD+ +++W ++
Sbjct: 360 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAW 77
TL+GH++ V ++++P+G LAS D L+ +W + G+ +T + H+ + VAW
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 78 SS-DSRLLVS--GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FD 132
S +L + G+ D+ ++IW + SG CL + HS V ++P ++SG
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 354
Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
+ IW T + L H+ V ++ + DG+ + S++ D R+W
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 9/176 (5%)
Query: 64 TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGHSNYVFCCNF 119
T+SGH + + W+ D R L SG +D + +W + G+ L+T H V +
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 120 NP-QSNLIVSG--SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG 175
P QSN++ +G + D +RIW+V +G CL + AHS S + LI +
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 355
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA 231
IW + + L + +S SP+G + +A D TL+LW + PA
Sbjct: 356 QLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVASAAADETLRLWRCFELDPA 410
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 48 DKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK 105
D + +W A G + + + G IS VAW + L G+ +++W++ K L+
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRD 164
+ HS V ++N S ++ SGS + DVR + + TL HS V + + D
Sbjct: 195 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 252
Query: 165 GSLIVSSSYDGLCRIWDTASGQC----LKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 217
G + S D L +W +A G+ L+T V V + P +LA T D
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSD 311
Query: 218 NTLKLWD 224
+++W+
Sbjct: 312 RHIRIWN 318
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 58
L GHT V S+ SP+G +AS++AD+ +++W ++
Sbjct: 371 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 406
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAW 77
TL+GH++ V ++++P+G LAS D L+ +W + G+ +T + H+ + VAW
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 78 SS-DSRLLVS--GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FD 132
S +L + G+ D+ ++IW + SG CL + HS V ++P ++SG
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 263
Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
+ IW T + L H+ V ++ + DG+ + S++ D R+W
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Query: 64 TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGHSNYVFCCNF 119
T+SGH + + W+ D R L SG +D + +W + G+ L+T H V +
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 120 NP-QSNLIVSG--SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG 175
P QSN++ +G + D +RIW+V +G CL + AHS S + LI +
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 264
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 223
IW + + L + +S SP+G + +A D TL+LW
Sbjct: 265 QLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVASAAADETLRLW 311
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 48 DKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK 105
D + +W A G + + + G IS VAW + L G+ +++W++ K L+
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRD 164
+ HS V ++N S ++ SGS + DVR + + TL HS V + + D
Sbjct: 104 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161
Query: 165 GSLIVSSSYDGLCRIWDTASGQC----LKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 217
G + S D L +W +A G+ L+T V V + P +LA T D
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSD 220
Query: 218 NTLKLWD 224
+++W+
Sbjct: 221 RHIRIWN 227
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 75 VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFD 132
V WSS + L V+ D ++ +W SSG L+ L+ Y+ + + N + G+
Sbjct: 31 VDWSSGNVLAVA--LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 88
Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQCLKTL 191
V++WDV+ K L+ + +HS V ++ +N S I+SS S G D +
Sbjct: 89 AEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVAT 145
Query: 192 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
+ + V ++++P+G+++ + DN + +W S
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 58
L GHT V S+ SP+G +AS++AD+ +++W ++
Sbjct: 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 65 ISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVFC 116
+ GH + D+AW + ++ SGS+D T+ +WE+ G + + TL+GH+ V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 117 CNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSY 173
++P + N+++S D + +WDV TG + TL H D + +V ++RDG+LI +S
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 174 DGLCRIWDTASGQCLKTLIDDDNP-----PVSFVKFSPNGKYI---LAATLDNTLKLWDS 225
D R+ + G + + D P PV V F GK + + + + LWD+
Sbjct: 197 DKRVRVIEPRKGTVVA---EKDRPHEGTRPVHAV-FVSEGKILTTGFSRMSERQVALWDT 252
Query: 226 K 226
K
Sbjct: 253 K 253
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 59 GKFEKTIS---GHKLGISDVAW-SSDSRLLVSGSDDKTLKIWELSSG-------KCLKTL 107
G+ +K + GH + D+AW + ++ SGS+D T+ +WE+ G + + TL
Sbjct: 68 GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 108 KGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRD 164
+GH+ V ++P + N+++S D + +WDV TG + TL H D + +V ++RD
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187
Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-----PVSFVKFSPNGKYI---LAATL 216
G+LI +S D R+ + G + + D P PV V F GK + +
Sbjct: 188 GALICTSCRDKRVRVIEPRKGT---VVAEKDRPHEGTRPVHAV-FVSEGKILTTGFSRMS 243
Query: 217 DNTLKLWDSK 226
+ + LWD+K
Sbjct: 244 ERQVALWDTK 253
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL 84
H ++ +KF P+GE L SSS D +KIW DG +T+ GH+ ++D+A R +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCN------------------------FN 120
+S S D T+++WE +G + T N N F
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256
Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---SLIVSSSYDGLC 177
+++G + + +V + + LP+ S DG + I + +G+
Sbjct: 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGML 315
Query: 178 RIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL---WDSKVVTPAII 233
WD S +C + + ++ P++ V F+ G +++ D ++KL D + PAI
Sbjct: 316 AQWDLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGFDTSIKLDIISDPESERPAIE 374
Query: 234 CSTP 237
TP
Sbjct: 375 FETP 378
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%)
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
R + G+ + +K+ + + + + H + + F P ++S S D ++IW V+
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 197
G +TL H V+ + G ++S+S DG R+W+ +G + T +NP
Sbjct: 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 225
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
Q + G+ + +++ D + AH ++ + F G ++SSS D +IW
Sbjct: 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 167
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLN 241
G +TLI V+ + G+ +L+A+LD T++LW+ C T ++
Sbjct: 168 VKDGSNPRTLIGH-RATVTDIAIIDRGRNVLSASLDGTIRLWE---------CGTGTTIH 217
Query: 242 YFYR 245
F R
Sbjct: 218 TFNR 221
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL 84
H ++ +KF P+GE L SSS D +KIW DG +T+ GH+ ++D+A R +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCN------------------------FN 120
+S S D T+++WE +G + T N N F
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 253
Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---SLIVSSSYDGLC 177
+++G + + +V + + LP+ S DG + I + +G+
Sbjct: 254 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGML 312
Query: 178 RIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL---WDSKVVTPAII 233
WD S +C + + ++ P++ V F+ G +++ D ++KL D + PAI
Sbjct: 313 AQWDLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGFDTSIKLDIISDPESERPAIE 371
Query: 234 CSTP 237
TP
Sbjct: 372 FETP 375
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%)
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
R + G+ + +K+ + + + + H + + F P ++S S D ++IW V+
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 197
G +TL H V+ + G ++S+S DG R+W+ +G + T +NP
Sbjct: 167 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 222
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
Q + G+ + +++ D + AH ++ + F G ++SSS D +IW
Sbjct: 105 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 164
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLN 241
G +TLI V+ + G+ +L+A+LD T++LW+ C T ++
Sbjct: 165 VKDGSNPRTLIGH-RATVTDIAIIDRGRNVLSASLDGTIRLWE---------CGTGTTIH 214
Query: 242 YFYR 245
F R
Sbjct: 215 TFNR 218
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 11/210 (5%)
Query: 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRL 83
H+ + K SP+G + AS ++IW + TI + D++W S+S+
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 84 L--VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDV 140
+ V ++ ++ +G L G + + +F P I+SGS D +V I++
Sbjct: 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177
Query: 141 RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 200
K T H+ V +V +N DGSL S+ DG +++ G DD V+
Sbjct: 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237
Query: 201 F------VKFSPNGKYILAATLDNTLKLWD 224
+ +SP+G I +A+ D T+K+W+
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 21/220 (9%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FE----KTISGH 68
+ K T HTK V SV+++P+G AS+ D I ++ DG FE K ++ H
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-H 238
Query: 69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI-- 126
+ + WS D + S S DKT+KIW +++ K KT+ V + Q +I
Sbjct: 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP-----VGTRIEDQQLGIIWT 293
Query: 127 ----VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
VS S + + + G + H+ ++A+ + DG + S+ +G WD
Sbjct: 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 222
++G + D ++ +K + G + + D+ LK+
Sbjct: 354 STGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV 392
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 31 SSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG 87
S V S + +++A D + ++ GA + + + H I+ VA+S++ LV+
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVAT 509
Query: 88 SDDKTLKIWELSSGKCLKTLKG---HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK 144
+ + + +++ L H+ V C +++P + + +GS D SV +W++
Sbjct: 510 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569
Query: 145 ----CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
+K A S S + N + IVS+ D + W+
Sbjct: 570 DHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFWN 608
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--SGHKL-GISDVAWSSDSR 82
HT V+ V +SP+ LA+ S D + +W I H + ++ V W +++
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET- 593
Query: 83 LLVSGSDDKTLKIWEL 98
+VS D +K W +
Sbjct: 594 TIVSAGQDSNIKFWNV 609
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Query: 19 LKFTLAGHTKAV---SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISD 74
L + L H +V V FS N ++SADK IK+W + K KT SG H +
Sbjct: 134 LVYNLQAHNASVWDAKVVSFSENK--FLTASADKTIKLW--QNDKVIKTFSGIHNDVVRH 189
Query: 75 VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
+A D +S S+D +K+ + +G L+T +GH ++V+C P +++ G D +
Sbjct: 190 LAVVDDGHF-ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRT 247
Query: 135 VRIWDVRTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
VRIW G K + TLPA S + +V +G +IV SS D L RI+
Sbjct: 248 VRIWSKENGSLKQVITLPAIS--IWSVDCXSNGDIIVGSS-DNLVRIF 292
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 11/162 (6%)
Query: 64 TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNF-NPQ 122
T+ GH+ + +++ +++SGS DKT K+W+ G + L+ H+ V+ +
Sbjct: 99 TLIGHQGNVCSLSFQDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS 154
Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
N ++ S D+++++W + K +KT H+D V + DG I S S DGL ++ D
Sbjct: 155 ENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVD 211
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 223
+G L+T + V +K PNG I++ D T+++W
Sbjct: 212 XHTGDVLRTY-EGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 50/215 (23%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
Y L TL GH + V V + + +AS S D +++W D + + ++ V
Sbjct: 8 YQLSATLKGHDQDVRDVVAVDDSK-VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVC 66
Query: 77 WSSDSRLLVSGSDDKTLK---IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133
+ S+ LL+ G D + ++ S L TL GH V C+ + Q +++SGS+D+
Sbjct: 67 YDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNV--CSLSFQDGVVISGSWDK 124
Query: 134 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 193
+ ++W + G + L AH+ +WD
Sbjct: 125 TAKVW--KEGSLVYNLQAHN-----------------------ASVWDA----------- 148
Query: 194 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV 228
V FS N L A+ D T+KLW + V
Sbjct: 149 ------KVVSFSEN--KFLTASADKTIKLWQNDKV 175
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 73/131 (55%), Gaps = 9/131 (6%)
Query: 114 VFCCNFNPQS---NLIVSGSFDESVRIWDVR-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 168
+ C +F+P + N +++GS+ VR W+V+ +G+ + K H+ PV V ++ DGS +
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDSK 226
++S D ++WD +S Q ++ I + PV + + +PN ++ + D TLK WD++
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Query: 227 VVTPAIICSTP 237
P ++ P
Sbjct: 160 SSNPMMVLQLP 170
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 29 AVSSVKFSPN---GEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRL 83
++ + FSP G +L + S ++ W D K H + DV WS D
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 100
Query: 84 LVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVR 141
+ + S DKT K+W+LSS + ++ + H V ++ P + +++GS+D++++ WD R
Sbjct: 101 VFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Query: 142 TGKCLKTL 149
+ + L
Sbjct: 160 SSNPMMVL 167
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSRL 83
HT V V +S +G + ++S DK K+W + + I+ H + + W + +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC 143
Query: 84 LVSGSDDKTLKIWELSSGKCLKTLK 108
+++GS DKTLK W+ S + L+
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQ 168
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 119 FNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 174
F+P + + D WD LKT P+SA FN +G++ +SSYD
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 12/226 (5%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 80
T+AGH V + + N L+S S I + T+ GH + +AW SD
Sbjct: 171 TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228
Query: 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG--SFDESVRI 137
L SG +D ++IW+ S T H+ V + P QSNL+ +G + D+ +
Sbjct: 229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGLCRIWD-TASGQCLKTLIDDD 195
W+ TG + T+ A S S + ++ + + D IW ++SG + I
Sbjct: 289 WNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH 348
Query: 196 NPPVSFVKFSPNGKYILAATLDNTLKLW----DSKVVTPAIICSTP 237
+ V + SP+G+ + A D LK W V P I TP
Sbjct: 349 DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTP 394
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 8/188 (4%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-D 80
TL GH+ V + + +G LAS D +++IW A + T + H + VAW
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 81 SRLLVSGSD--DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS--GSFDESVR 136
S LL +G DK + W ++G + T+ S V ++P S I+S G D ++
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLS 330
Query: 137 IWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 194
IW + K +PAH V + DG ++ +++ D + W G +K I
Sbjct: 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPI 390
Query: 195 DNPPVSFV 202
P S +
Sbjct: 391 TKTPSSSI 398
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 131
++ V WS D L G + + I+++ S L+T+ GH V C ++N +++ SGS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSR 194
Query: 132 DESVRIWDVR-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 190
++ DVR + TL HS V + + DG + S D + +IWD A K
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD-ARSSIPKF 253
Query: 191 LIDDDNPPVSFVKFSPNGKYILA---ATLDNTLKLWDS 225
+ N V V + P +LA T+D + W++
Sbjct: 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 28/185 (15%)
Query: 26 HTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGK------FEKTISGHKLGISDVAWS 78
H +V +V++ P+ + SSS DK +K+W + FE+T+ H + S
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMS----PVS 153
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRI 137
+ L+ G+ +++ +L SG C L+GH + +++P+ + I+ + S D V++
Sbjct: 154 TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 138 WDVRTGK-CLKTL---------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
WDVR CL TL AH+ V+ + F DG +++ D R+W+
Sbjct: 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Query: 182 TASGQ 186
+++G+
Sbjct: 274 SSNGE 278
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSS 79
H V+ + F+ +G L + D +++W + +G+ + K + K G+
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
S V T+ ++ + SG+ + LKGH V CC F + SGS D ++ W
Sbjct: 303 CSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 25/223 (11%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 80
L GH + ++ VK++ G+ L S S D +W + +G+ T+ GH + WS D
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH----TGTIWSIDVD 83
Query: 81 --SRLLVSGSDDKTLKIWELSSGKCLKTLKG-----HSNYVFCCNF----------NPQS 123
++ V+GS D ++K+W++S+G+C+ T K + C N+ NP S
Sbjct: 84 CFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143
Query: 124 NLIVSGSFDESVRIWDVRTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
I D + + + + + H D + ++ G I++ DG +D
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD 203
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
++ ID +S ++FSP+ Y + ++ D L D
Sbjct: 204 VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 86/210 (40%), Gaps = 22/210 (10%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
TL GHT + S+ ++ + SAD IK+W +G+ T + + V +S
Sbjct: 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCG 127
Query: 82 RLLVSGSDD-----KTLKIWELSSGKCLKTLKGHS-------------NYVFCCNFNPQS 123
++ D+ ++ I+E+ L S + ++ +
Sbjct: 128 NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG 187
Query: 124 NLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
I++G D + +DV + + ++ H +S + F+ D + ++SS D + D
Sbjct: 188 KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247
Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
++ Q LK D P++ +P ++I+
Sbjct: 248 STLQVLKKYETD--CPLNTAVITPLKEFII 275
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 24/225 (10%)
Query: 18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHK---- 69
VL F H + SVK++ +G + S + + +W G FE +G
Sbjct: 144 VLNF----HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199
Query: 70 --------LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP 121
LG+ DV W D + ++ G +++++ L GH + FN
Sbjct: 200 ENHSGDGSLGV-DVEWVDDDKFVIPGPKGAIF-VYQITEKTPTGKLIGHHGPISVLEFND 257
Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
+ L++S S D ++RIW G HS + + + D ++S S DG R+W
Sbjct: 258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWS 316
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
L I D P+ + S +G+ A +D + ++D K
Sbjct: 317 LKQNTLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 56/168 (33%)
Query: 111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 170
+N V C ++ N IV+G + +R+W+ +TG L L H P+ +V +N+DG+ I+S
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 171 SSYDGLCRIWDTASGQCLKTL---------------------------IDDD-------- 195
+ + +W+ SG ++ +DDD
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 196 --------------------NPPVSFVKFSPNGKYILAATLDNTLKLW 223
+ P+S ++F+ K +L+A+ D TL++W
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 10/145 (6%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
L GH +S ++F+ + L S+S D ++IW +G + GH I +W D +
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
++S S D ++++W L L +F + D V ++D
Sbjct: 303 -VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD--- 358
Query: 143 GKCLKTLPAHSDPVSAVHFNRDGSL 167
LK L + S +++ NRDG L
Sbjct: 359 ---LKKLNSKS---RSLYGNRDGIL 377
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/240 (17%), Positives = 94/240 (39%), Gaps = 22/240 (9%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
+ L + T V+ + +S +G + + + +++W G ++ H+ I V
Sbjct: 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVK 156
Query: 77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK---------------GHSNYVFCCNFNP 121
W+ D ++S + +W + SG ++ + G + +
Sbjct: 157 WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216
Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
++ G ++ ++ + L H P+S + FN L++S+S DG RIW
Sbjct: 217 DDKFVIPGP-KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK---VVTPAIICSTPL 238
+G VS + +++ ++D +++LW K ++ +I+ P+
Sbjct: 276 GGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPI 333
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 30 VSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKL----GISDVAWSSDSRLL 84
V V+FSP+ GE++ + +D+ I + G+F K I + GI ++W +
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 85 VSGSDDKTLKIWELSSGKCL------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
G+D T+++W++++ KC+ K G+ N + I+S S D ++ +
Sbjct: 269 TVGAD-ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR---IISLSLDGTLNFY 324
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 184
++ + LKT+ H+ ++A+ N ++S SYDG W ++S
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 366
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 68 HKLG--ISDVAWSSDS-RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV----FCCNFN 120
HK G + DV +S DS +++ D+ + ++ SG+ LK ++ V F ++
Sbjct: 203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262
Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLC 177
G+ D ++R+WDV T KC++ TL V G+ I+S S DG
Sbjct: 263 DSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
++ + LKT I N ++ + +P +++ + D + W S
Sbjct: 322 NFYELGHDEVLKT-ISGHNKGITALTVNP----LISGSYDGRIMEWSS 364
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 63 KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
KTISGH GI+ + + L+SGS D + W SS + HSN + + N +
Sbjct: 333 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLD-NSK 382
Query: 123 SNLIVSGSFDESVRIWDV---RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 171
+ S S+D+++++ + G K A++D +AV N D LI+ S
Sbjct: 383 AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 19/162 (11%)
Query: 30 VSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKL----GISDVAWSSDSRLL 84
V V+FSP+ GE++ + +D+ I + G+F K I + GI ++W +
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 85 VSGSDDKTLKIWELSSGKCL------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
G+D T+++W++++ KC+ K G+ N + I+S S D ++ +
Sbjct: 269 TVGAD-ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR---IISLSLDGTLNFY 324
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
++ + LKT+ H+ ++A+ N ++S SYDG W
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 68 HKLG--ISDVAWSSDS-RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV----FCCNFN 120
HK G + DV +S DS +++ D+ + ++ SG+ LK ++ V F ++
Sbjct: 203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262
Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLC 177
G+ D ++R+WDV T KC++ TL V G+ I+S S DG
Sbjct: 263 DSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 223
++ + LKT I N ++ + +P +++ + D + W
Sbjct: 322 NFYELGHDEVLKT-ISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 63 KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
KTISGH GI+ + + L+SGS D + W SS + HSN + + N +
Sbjct: 333 KTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSXH-----QDHSNLIVSLD-NSK 382
Query: 123 SNLIVSGSFDESVRIWDV---RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 171
+ S S+D+++++ + G K A++D +AV N D LI+ S
Sbjct: 383 AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 4/206 (1%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
+K L A ++ SP+ + S +D I +W ++ + GH G S + S
Sbjct: 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
+D L +G D T++ W+L G+ L+ ++ +F + P + G +V +
Sbjct: 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
V + L H V ++ F G VS+ D L W T G + ++
Sbjct: 252 HVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSS 308
Query: 199 VSFVKFSPNGKYILAATLDNTLKLWD 224
V S + KYI+ + D +++
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG 87
+ S K P+G L + IW A + + ++ +A S DS++ S
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 88 SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK 147
D + +W+L + ++ +GH++ C + + + +G D +VR WD+R G+ L+
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 17/168 (10%)
Query: 68 HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG---------KCLKTLKGHSNYVFCCN 118
H + V S+ +R + +G +K+W++S CL NY+ C
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQLDCLN----RDNYIRSCK 104
Query: 119 FNPQSNLIVSGSFDESVRIWDVR--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 176
P ++ G ++ IWD+ T + L + + A+ + D + S DG
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164
Query: 177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
+WD + Q L S + S +G + LDNT++ WD
Sbjct: 165 IAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK----GHSNYVFCCNFNPQSN 124
+ G++DVAW S+ +LV+ SD +++WE+ + L K H + V +
Sbjct: 94 EAGVTDVAWVSEKGILVA-SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT 152
Query: 125 LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDT 182
VSG D SV++WD+ LK+ AHS V+ V +D ++ +S DG +WDT
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDT 211
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRI 137
SD VSG D ++K+W+LS LK+ HS+ V C P + I +S D + +
Sbjct: 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 138 WDVRTGK 144
WD R K
Sbjct: 209 WDTRKPK 215
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 27/210 (12%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEK---TISGHKLGISDV 75
K GHT V V + E L S AD + + IW + K T+ H ++ +
Sbjct: 226 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 285
Query: 76 AWSSDSR-LLVSGSDDKTLKIWELSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGS-FD 132
+++ S +L +GS DKT+ +W+L + K L + + H + +F ++P + I++ S D
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Query: 133 ESVRIWDV-RTGKCLKTLPAHSDP-------------VSAVHFNRDGSLIVSS-SYDGLC 177
+ +WD+ + G+ T A P +S +N + I+ S S D +
Sbjct: 346 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405
Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPN 207
++W Q + + +D+ P + + N
Sbjct: 406 QVW-----QMAENVYNDEEPEIPASELETN 430
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 114/280 (40%), Gaps = 82/280 (29%)
Query: 26 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKT--------ISGHKLGISD 74
H V+ ++ P + ++ S+D L+ + + K E + + GH+
Sbjct: 129 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 188
Query: 75 VAWSSD-SRLLVSGSDDKTLKIWEL----------------------------------- 98
++W+ + + L+S SDD T+ +W++
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 248
Query: 99 ------------------SSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWD 139
++ K T+ H+ V C +FNP S I+ +GS D++V +WD
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 140 VRTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDN 196
+R K L + +H D + V ++ + +++ SS D +WD + G+ T +D
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 368
Query: 197 PP------------VSFVKFSPNGKYIL-AATLDNTLKLW 223
PP +S ++PN +I+ + + DN +++W
Sbjct: 369 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIW 54
L F GHT +S ++PN W + S S D ++++W
Sbjct: 372 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 27/210 (12%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEK---TISGHKLGISDV 75
K GHT V V + E L S AD + + IW + K T+ H ++ +
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283
Query: 76 AWSSDSR-LLVSGSDDKTLKIWELSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGS-FD 132
+++ S +L +GS DKT+ +W+L + K L + + H + +F ++P + I++ S D
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
Query: 133 ESVRIWDV-RTGKCLKTLPAHSDP-------------VSAVHFNRDGSLIVSS-SYDGLC 177
+ +WD+ + G+ T A P +S +N + I+ S S D +
Sbjct: 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403
Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPN 207
++W Q + + +D+ P + + N
Sbjct: 404 QVW-----QMAENVYNDEEPEIPASELETN 428
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 114/280 (40%), Gaps = 82/280 (29%)
Query: 26 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKT--------ISGHKLGISD 74
H V+ ++ P + ++ S+D L+ + + K E + + GH+
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 186
Query: 75 VAWSSD-SRLLVSGSDDKTLKIWEL----------------------------------- 98
++W+ + + L+S SDD T+ +W++
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 99 ------------------SSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWD 139
++ K T+ H+ V C +FNP S I+ +GS D++V +WD
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 140 VRTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDN 196
+R K L + +H D + V ++ + +++ SS D +WD + G+ T +D
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366
Query: 197 PP------------VSFVKFSPNGKYIL-AATLDNTLKLW 223
PP +S ++PN +I+ + + DN +++W
Sbjct: 367 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIW 54
L F GHT +S ++PN W + S S D ++++W
Sbjct: 370 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 71/230 (30%)
Query: 65 ISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVF- 115
+ GH+ ++W+S+ S L+S SDD T+ +W++++G GHS V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 116 ---------------------------------------------CCNFNPQSNLIV-SG 129
C +FNP S I+ +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 130 SFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQ 186
S D++V +WD+R K L T +H D + VH++ + +++ SS D +WD + G+
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Query: 187 CLKTLIDDDNPP------------VSFVKFSPNGKYIL-AATLDNTLKLW 223
+D PP +S ++PN +++ + + DN +++W
Sbjct: 355 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 25 GHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS-SDS 81
HT V+ + F+P E+ LA+ SADK + +W + K + T HK I V WS +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 82 RLLVSGSDDKTLKIWELSS--------------GKCLKTLKGHSNYVFCCNFNPQSN-LI 126
+L S D+ L +W+LS + L GH+ + ++NP +I
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 392
Query: 127 VSGSFDESVRIWDV 140
S S D ++IW +
Sbjct: 393 CSVSEDNIMQIWQM 406
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIW 54
L F GHT +S ++PN W + S S D +++IW
Sbjct: 368 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVR 136
S+ SR++V+G + + + + GK L L+ H V NP + + + S D++V+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 137 IWDVRT--GKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
IWD+R GK L +LP H PV+A F+ DG+ ++++ R++ + C LI
Sbjct: 277 IWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335
Query: 193 DDDNPPVSFVKFSP 206
+P F +P
Sbjct: 336 --PHPHRHFQHLTP 347
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVR 136
S+ SR++V+G + + + + GK L L+ H V NP + + + S D++V+
Sbjct: 219 SASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 277
Query: 137 IWDVRT--GKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
IWD+R GK L +LP H PV+A F+ DG+ ++++ R++ + C LI
Sbjct: 278 IWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 336
Query: 193 DDDNPPVSFVKFSP 206
+P F +P
Sbjct: 337 --PHPHRHFQHLTP 348
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVR 136
S+ SR++V+G + + + + GK L L+ H V NP + + + S D++V+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 137 IWDVRT--GKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
IWD+R GK L +LP H PV+A F+ DG+ ++++ R++ + C LI
Sbjct: 277 IWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335
Query: 193 DDDNPPVSFVKFSP 206
+P F +P
Sbjct: 336 --PHPHRHFQHLTP 347
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 71/230 (30%)
Query: 65 ISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVF- 115
+ GH+ ++W+S+ S L+S SDD T+ +W++++G GHS V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 116 ---------------------------------------------CCNFNPQSNLIV-SG 129
C +FNP S I+ +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 130 SFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQ 186
S D++V +WD+R K L T +H D + VH++ + +++ SS D +WD + G+
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Query: 187 CLKTLIDDDNPP------------VSFVKFSPNGKYIL-AATLDNTLKLW 223
+D PP +S ++PN +++ + + DN ++W
Sbjct: 355 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 25 GHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS-SDS 81
HT V+ + F+P E+ LA+ SADK + +W + K + T HK I V WS +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 82 RLLVSGSDDKTLKIWELSS--------------GKCLKTLKGHSNYVFCCNFNPQSN-LI 126
+L S D+ L +W+LS + L GH+ + ++NP +I
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 392
Query: 127 VSGSFDESVRIW 138
S S D +IW
Sbjct: 393 CSVSEDNIXQIW 404
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIW 54
L F GHT +S ++PN W + S S D + +IW
Sbjct: 368 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEK---TISGHKLGISDV 75
K GHT V V + E L S AD + + IW + K T+ H ++ +
Sbjct: 228 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 287
Query: 76 AWSSDSR-LLVSGSDDKTLKIWELSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGS-FD 132
+++ S +L +GS DKT+ +W+L + K L + + H + +F ++P + I++ S D
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Query: 133 ESVRIWDV-RTGKCLKTLPAHSDP-------------VSAVHFNRDGSLIVSS-SYDGLC 177
+ +WD+ + G+ T A P +S +N + I+ S S D +
Sbjct: 348 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407
Query: 178 RIWDTASGQCLKTLIDDDNP 197
++W Q + + +D+ P
Sbjct: 408 QVW-----QMAENVYNDEEP 422
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 114/280 (40%), Gaps = 82/280 (29%)
Query: 26 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKT--------ISGHKLGISD 74
H V+ ++ P + ++ S+D L+ + + K E + + GH+
Sbjct: 131 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 190
Query: 75 VAWSSD-SRLLVSGSDDKTLKIWEL----------------------------------- 98
++W+ + + L+S SDD T+ +W++
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 250
Query: 99 ------------------SSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWD 139
++ K T+ H+ V C +FNP S I+ +GS D++V +WD
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 140 VRTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDN 196
+R K L + +H D + V ++ + +++ SS D +WD + G+ T +D
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 370
Query: 197 PP------------VSFVKFSPNGKYIL-AATLDNTLKLW 223
PP +S ++PN +I+ + + DN +++W
Sbjct: 371 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIW 54
L F GHT +S ++PN W + S S D ++++W
Sbjct: 374 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 65 ISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSS----GKCL--KTL-KGHSNYVFC 116
+ GH+ ++W+ + S L+S SDD T+ +W++S+ GK + KT+ GH+ V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 117 CNFN-PQSNLIVSGSFDESVRIWDVR---TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS- 171
+++ +L S + D+ + IWD R T K ++ AH+ V+ + FN I+++
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWD 224
S D +WD + + + + V++SP+ + ILA++ D L +WD
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 27/200 (13%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEK---TISGHKLGISDV 75
K GHT V V + E L S AD + + IW K ++ H ++ +
Sbjct: 220 KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCL 279
Query: 76 AWSSDSR-LLVSGSDDKTLKIWELSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGS-FD 132
+++ S +L +GS DKT+ +W+L + K L + + H + +F ++P + I++ S D
Sbjct: 280 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 339
Query: 133 ESVRIWDV-RTGKCLKTLPAHSDP-------------VSAVHFNRDGS-LIVSSSYDGLC 177
+ +WD+ + G+ A P +S +N + +I S S D +
Sbjct: 340 RRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 399
Query: 178 RIWDTASGQCLKTLIDDDNP 197
++W Q + + +D++P
Sbjct: 400 QVW-----QMAENIYNDEDP 414
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIW 54
L F GHT +S ++PN W + S S D ++++W
Sbjct: 366 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGS 130
+S V+ S VSGS D +K+W+L+ L + + H+ V C +P + + +S S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 131 FDESVRIWDVRTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
D + +WD R K + + P S + + V +G + DT S C
Sbjct: 190 EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC 249
Query: 188 -LKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDSKV 227
L + + V+ + FSP+ LA+ + D +L + DS +
Sbjct: 250 VLSSAVHSQC--VTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK----GHSNYVFCCNFNPQSN 124
+ G++D+ W + +LV+ SD +++WEL + L K H + V +
Sbjct: 82 EAGVADLTWVGERGILVA-SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT 140
Query: 125 LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 182
VSGS D +++WD+ L + AH+ V+ V + S+ +S S D +WDT
Sbjct: 141 QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 94/246 (38%), Gaps = 36/246 (14%)
Query: 18 VLKFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGIS 73
+L L GH V V ++ G LAS S D+ + IW +G +EK+ +GH ++
Sbjct: 48 ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN 107
Query: 74 DVAWSSDSR--LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 131
V W+ +L GS D + + + + K ++ + CN + +V GS
Sbjct: 108 SVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167
Query: 132 --------------------DESVRIWDVRTG---KCLKTLPAHSDPVSAVHF----NRD 164
D +++W K + L AHSD V V +
Sbjct: 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLP 227
Query: 165 GSLIVSSSYDGLCRIW---DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 221
S I S S DG IW D +S L+ N V V +S + + DN +
Sbjct: 228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT 287
Query: 222 LWDSKV 227
LW V
Sbjct: 288 LWKESV 293
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFNRD--G 165
H + + + + + S D SV+I+DVR G + L H PV V + G
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKT 190
+++ S SYD IW +G K+
Sbjct: 72 NILASCSYDRKVIIWREENGTWEKS 96
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDV 75
V+ H + + G LA+ S+D+ +KI+ +G + GH+ + V
Sbjct: 4 VINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV 63
Query: 76 AWSSD--SRLLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSN--LIVSG 129
AW+ +L S S D+ + IW +G K+ + GH + V + P ++ G
Sbjct: 64 AWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG 123
Query: 130 SFDESVRI 137
S D ++ +
Sbjct: 124 SSDGAISL 131
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH------SNYVFCCNFNPQSNLIV----S 128
S+ L+ +G ++ T++I ELS+ + L + SN + F+PQ +L+ S
Sbjct: 205 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 264
Query: 129 GSFDESVRIWDVRTGKCLKTLP-------------AHSDPVSAVHFNRDGSLIVSSSYDG 175
SF + +++ G+ + +L AHS V ++ FN G + S+ +DG
Sbjct: 265 NSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 323
Query: 176 LCRIWDTASGQCLKTL 191
R WD + + + TL
Sbjct: 324 KLRFWDVKTKERITTL 339
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 26/138 (18%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
+ ++ ++ ++ SVKFSP G LA + Y+ +F G ++G
Sbjct: 236 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-----GERIG-------- 282
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
+L + SS L HS++V +FN + S +D +R WD
Sbjct: 283 ------------SLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 329
Query: 140 VRTGKCLKTLPAHSDPVS 157
V+T + + TL H D +
Sbjct: 330 VKTKERITTLNMHCDDIE 347
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH------SNYVFCCNFNPQSNLIV----S 128
S+ L+ +G ++ T++I ELS+ + L + SN + F+PQ +L+ S
Sbjct: 195 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254
Query: 129 GSFDESVRIWDVRTGKCLKTLP-------------AHSDPVSAVHFNRDGSLIVSSSYDG 175
SF + +++ G+ + +L AHS V ++ FN G + S+ +DG
Sbjct: 255 NSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313
Query: 176 LCRIWDTASGQCLKTL 191
R WD + + + TL
Sbjct: 314 KLRFWDVKTKERITTL 329
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 26/138 (18%)
Query: 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
+ ++ ++ ++ SVKFSP G LA + Y+ +F G ++G
Sbjct: 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-----GERIG-------- 272
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
+L + SS L HS++V +FN + S +D +R WD
Sbjct: 273 ------------SLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319
Query: 140 VRTGKCLKTLPAHSDPVS 157
V+T + + TL H D +
Sbjct: 320 VKTKERITTLNMHCDDIE 337
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 45 SSADKLIKIWGAYDGK--FEKTISGHKLGISDVAW-SSDSRLLVSGSDDKTLKIWELSSG 101
S D I IW + + GH+ GI + W D LL+S D T+ +W S
Sbjct: 236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295
Query: 102 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRI 137
+ L N+ F F P++ +L SFD + +
Sbjct: 296 EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 43 ASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSRLLVSGSDDKTLKIWELSS 100
A+ S D +++W EK I+ ++ +D+ WS +++++ D+ +L+++ +
Sbjct: 39 ANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNE 98
Query: 101 GK----CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP 155
+ HS+ V FN Q N++ SG + + IWD+ KC ++ P++ P
Sbjct: 99 ANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN--KCTES-PSNYTP 155
Query: 156 VS 157
++
Sbjct: 156 LT 157
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 66 SGHKLGISDVAWSSDSRLLV---SGSD-DKTLKIWELSSGKC-LKTL-KGHSNYVFCCNF 119
SG K +S V W + V +GSD D ++ IW+L + L+TL +GH + ++
Sbjct: 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW 270
Query: 120 NPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD 154
Q +L++S D +V +W+ + + L PA +
Sbjct: 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN 306
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR--TGKCLKTLPAHSDPVSAVHFNRD-- 164
H+ + + + + S D++++I++V T K + TL H PV V +
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPN--GKYILAATLDNTLK 221
G+++ S SYDG IW +G+ + + + V+ V+++P+ G +L A+ D +
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 222 LWDSK---VVTPAIICSTPLNLN 241
+ + K +P II + + +N
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVN 149
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 66 SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL--SSGKCLKTLKGHSNYVFCCNF-NPQ 122
+ H I D + + + S DKT+KI+E+ + K + TL GH V+ ++ +P+
Sbjct: 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 123 -SNLIVSGSFDESVRIWDVRTGKC--LKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLC 177
++ S S+D V IW G+ + HS V++V + + G +++ +S DG
Sbjct: 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV 125
Query: 178 RIWD-TASGQCLKTLIDDDNPPVSFVKFSP---------NG----KYILAATLDNTLKLW 223
+ + +G +ID V+ ++P NG + + DN +K+W
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 36/157 (22%)
Query: 24 AGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKT-------ISGHKLGISD 74
A H+ +V+SV+++P+ G L +S+D + + +F++ I H +G++
Sbjct: 96 AVHSASVNSVQWAPHEYGPMLLVASSDGKVSV-----VEFKENGTTSPIIIDAHAIGVNS 150
Query: 75 VAW-------------SSDSRLLVSGSDDKTLKIWELSSGK----CLKTLKGHSNYVFCC 117
+W + +SR V+G D +KIW+ +S TL+GHS++V
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
Query: 118 NFNPQ---SNLIVSGSFDESVRIW--DVRTGKCLKTL 149
++P + + S S D + IW D G KTL
Sbjct: 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL 247
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPN---GEWLASSSADKLIKIWGA--YDGKFEKTISGHKLG 71
YVL+ TL GH+ V V +SP ++AS S D+ IW G ++KT+ +
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEE-K 252
Query: 72 ISDVAWS-----SDSRLLVSGSDDK 91
DV W S + L +SG D+K
Sbjct: 253 FPDVLWRASWSLSGNVLALSGGDNK 277
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 31/229 (13%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSD- 80
H + + G+ +A+ S+DK IKI+ +G+ K T++GH+ + V W+
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIF-EVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 81 -SRLLVSGSDDKTLKIWELSSGKC--LKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 135
+L S S D + IW+ +G+ + HS V + P +++ S D V
Sbjct: 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV 125
Query: 136 RIWDVRTGKCLK--TLPAHSDPVSAVHF-------------NRDGSLIVSSSYDGLCRIW 180
+ + + + AH+ V++ + ++ V+ D L +IW
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 181 ---DTASGQCLKTLIDDDNPPVSFVKFSPN---GKYILAATLDNTLKLW 223
A L++ ++ + V V +SP Y+ + + D T +W
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 130 SFDESVRIWDVR--TGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYDGLCRIWDTASG 185
S D++++I++V T K + TL H PV V + G+++ S SYDG IW +G
Sbjct: 28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENG 87
Query: 186 QCLKTLIDD-DNPPVSFVKFSPN--GKYILAATLDNTLKLWDSK---VVTPAIICSTPLN 239
+ + + + V+ V+++P+ G +L A+ D + + + K +P II + +
Sbjct: 88 RWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147
Query: 240 LN 241
+N
Sbjct: 148 VN 149
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 66 SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL--SSGKCLKTLKGHSNYVFCCNF-NPQ 122
+ H I D + + S DKT+KI+E+ + K + TL GH V+ ++ +P+
Sbjct: 6 NAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 123 -SNLIVSGSFDESVRIWDVRTGKC--LKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLC 177
++ S S+D V IW G+ + HS V++V + + G ++ +S DG
Sbjct: 66 FGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKV 125
Query: 178 RIWD-TASGQCLKTLIDDDNPPVSFVKFSP---------NG----KYILAATLDNTLKLW 223
+ + +G +ID V+ ++P NG + + DN +K+W
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 36/157 (22%)
Query: 24 AGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKT-------ISGHKLGISD 74
A H+ +V+SV+++P+ G L +S+D + + +F++ I H +G++
Sbjct: 96 AVHSASVNSVQWAPHEYGPXLLVASSDGKVSV-----VEFKENGTTSPIIIDAHAIGVNS 150
Query: 75 VAWS-------------SDSRLLVSGSDDKTLKIWELSSGKCL----KTLKGHSNYVFCC 117
+W+ +SR V+G D +KIW+ +S TL+GHS++V
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
Query: 118 NFNPQ---SNLIVSGSFDESVRIW--DVRTGKCLKTL 149
++P + S S D + IW D G KTL
Sbjct: 211 AWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTL 247
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPN---GEWLASSSADKLIKIWGA--YDGKFEKTISGHKLG 71
YVL+ TL GH+ V V +SP + AS S D+ IW G ++KT+ +
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEE-K 252
Query: 72 ISDVAWS-----SDSRLLVSGSDDK 91
DV W S + L +SG D+K
Sbjct: 253 FPDVLWRASWSLSGNVLALSGGDNK 277
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR--TGKCLKTLPAHSDPVSA 158
G + H+ + + + + S D++++I++V T K + TL H PV
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR 60
Query: 159 VHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPN--GKYILA 213
V + G+++ S SYDG IW +G+ + + + V+ V+++P+ G +L
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 120
Query: 214 ATLDNTLKLWDSK---VVTPAIICSTPLNLN 241
A+ D + + + K +P II + + +N
Sbjct: 121 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 151
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 66 SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL--SSGKCLKTLKGHSNYVFCCNF-NPQ 122
+ H I D + L + S DKT+KI+E+ + K + TL GH V+ ++ +P+
Sbjct: 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 67
Query: 123 -SNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLC 177
++ S S+D V IW G+ + HS V++V + + G L++ +S DG
Sbjct: 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 127
Query: 178 RIWD-TASGQCLKTLIDDDNPPVSFVKFSP---------NG----KYILAATLDNTLKLW 223
+ + +G +ID V+ ++P NG + + DN +K+W
Sbjct: 128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 32/155 (20%)
Query: 24 AGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKT-----ISGHKLGISDVA 76
A H+ +V+SV+++P+ G L +S+D + + + K T I H +G++ +
Sbjct: 98 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSV---VEFKENGTTSPIIIDAHAIGVNSAS 154
Query: 77 W-------------SSDSRLLVSGSDDKTLKIWELSSGK----CLKTLKGHSNYVFCCNF 119
W + +SR V+G D +KIW+ +S TL+GHS++V +
Sbjct: 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 214
Query: 120 NPQ---SNLIVSGSFDESVRIW--DVRTGKCLKTL 149
+P + + S S D + IW D G KTL
Sbjct: 215 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 249
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPN---GEWLASSSADKLIKIWGA--YDGKFEKTISGHKLG 71
YVL+ TL GH+ V V +SP +LAS S D+ IW G ++KT+ +
Sbjct: 196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEE-K 254
Query: 72 ISDVAWS-----SDSRLLVSGSDDK 91
DV W S + L +SG D+K
Sbjct: 255 FPDVLWRASWSLSGNVLALSGGDNK 279
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 31/229 (13%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSD- 80
H + + G+ LA+ S+DK IKI+ +G+ K T++GH+ + V W+
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIF-EVEGETHKLIDTLTGHEGPVWRVDWAHPK 67
Query: 81 -SRLLVSGSDDKTLKIWELSSGK--CLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 135
+L S S D + IW+ +G+ + HS V + P L++ S D V
Sbjct: 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 127
Query: 136 RIWDVRTGKCLK--TLPAHSDPVSAVHF-------------NRDGSLIVSSSYDGLCRIW 180
+ + + + AH+ V++ + ++ V+ D L +IW
Sbjct: 128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187
Query: 181 ---DTASGQCLKTLIDDDNPPVSFVKFSPN---GKYILAATLDNTLKLW 223
A L++ ++ + V V +SP Y+ + + D T +W
Sbjct: 188 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR--TGKCLKTLPAHSDPVSAVHFNRD-- 164
H+ + + + + S D++++I++V T K + TL H PV V +
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPN--GKYILAATLDNTLK 221
G+++ S SYDG IW +G+ + + + V+ V+++P+ G +L A+ D +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 222 LWDSK---VVTPAIICSTPLNLN 241
+ + K +P II + + +N
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVN 149
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 66 SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL--SSGKCLKTLKGHSNYVFCCNF-NPQ 122
+ H I D + L + S DKT+KI+E+ + K + TL GH V+ ++ +P+
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 123 -SNLIVSGSFDESVRIWDVRTGKC--LKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLC 177
++ S S+D V IW G+ + HS V++V + + G L++ +S DG
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Query: 178 RIWD-TASGQCLKTLIDDDNPPVSFVKFSP---------NG----KYILAATLDNTLKLW 223
+ + +G +ID V+ ++P NG + + DN +K+W
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 36/157 (22%)
Query: 24 AGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKT-------ISGHKLGISD 74
A H+ +V+SV+++P+ G L +S+D + + +F++ I H +G++
Sbjct: 96 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSV-----VEFKENGTTSPIIIDAHAIGVNS 150
Query: 75 VAWS-------------SDSRLLVSGSDDKTLKIWELSSGK----CLKTLKGHSNYVFCC 117
+W+ +SR V+G D +KIW+ +S TL+GHS++V
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
Query: 118 NFNPQ---SNLIVSGSFDESVRIW--DVRTGKCLKTL 149
++P + + S S D + IW D G KTL
Sbjct: 211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 247
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPN---GEWLASSSADKLIKIWGA--YDGKFEKTISGHKLG 71
YVL+ TL GH+ V V +SP +LAS S D+ IW G ++KT+ +
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEE-K 252
Query: 72 ISDVAWS-----SDSRLLVSGSDDK 91
DV W S + L +SG D+K
Sbjct: 253 FPDVLWRASWSLSGNVLALSGGDNK 277
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 31/229 (13%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSD- 80
H + + G+ LA+ S+DK IKI+ +G+ K T++GH+ + V W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIF-EVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 81 -SRLLVSGSDDKTLKIWELSSGKC--LKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESV 135
+L S S D + IW+ +G+ + HS V + P L++ S D V
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Query: 136 RIWDVRTGKCLK--TLPAHSDPVSAVHF-------------NRDGSLIVSSSYDGLCRIW 180
+ + + + AH+ V++ + ++ V+ D L +IW
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 181 ---DTASGQCLKTLIDDDNPPVSFVKFSPN---GKYILAATLDNTLKLW 223
A L++ ++ + V V +SP Y+ + + D T +W
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 66 SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL--SSGKCLKTLKGHSNYVFCCNF-NPQ 122
+ H I D + L + S DKT+KI+E+ + K + TL GH V+ ++ +P+
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 123 -SNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLC 177
++ S S+D V IW G+ + HS V++V + + G L++ +S DG
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Query: 178 RIWD-TASGQCLKTLIDDDNPPVSFVKFSP---------NG----KYILAATLDNTLKLW 223
+ + +G +ID V+ ++P NG + + DN +K+W
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 70/143 (48%), Gaps = 10/143 (6%)
Query: 109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR--TGKCLKTLPAHSDPVSAVHFN--RD 164
H+ + + + + S D++++I++V T K + TL H PV V + +
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPN--GKYILAATLDNTLK 221
G+++ S SYDG IW +G+ + + + V+ V+++P+ G +L A+ D +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 222 LWDSK---VVTPAIICSTPLNLN 241
+ + K +P II + + +N
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVN 149
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 26/152 (17%)
Query: 24 AGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAW-- 77
A H+ +V+SV+++P+ G L +S+D + + + I H +G++ +W
Sbjct: 96 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
Query: 78 -----------SSDSRLLVSGSDDKTLKIWELSSGK----CLKTLKGHSNYVFCCNFNPQ 122
+ +SR V+G D +KIW+ +S TL+GHS++V ++P
Sbjct: 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
Query: 123 SNL---IVSGSFDESVRIW--DVRTGKCLKTL 149
L + S S D + IW D G KTL
Sbjct: 216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 247
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPN---GEWLASSSADKLIKIWGA--YDGKFEKTISGHKLG 71
YVL+ TL GH+ V V +SP +LAS S D+ IW G ++KT+ +
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEE-K 252
Query: 72 ISDVAWS-----SDSRLLVSGSDDK 91
DV W S + L +SG D+K
Sbjct: 253 FPDVLWRASWSLSGNVLALSGGDNK 277
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 31/229 (13%)
Query: 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDS 81
H + + G+ LA+ S+DK IKI+ +G+ K T++GH+ + V W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 82 --RLLVSGSDDKTLKIWELSSGK--CLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESV 135
+L S S D + IW+ +G+ + HS V + P L++ S D V
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Query: 136 RIWDVRTGKCLK--TLPAHSDPVSAVHF-------------NRDGSLIVSSSYDGLCRIW 180
+ + + + AH+ V++ + ++ V+ D L +IW
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 181 ---DTASGQCLKTLIDDDNPPVSFVKFSPN---GKYILAATLDNTLKLW 223
A L++ ++ + V V +SP Y+ + + D T +W
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 42 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSRLLVSGSDDKTLKIWELSS 100
LA + + +I+I + K GH I+++ + D LL+S S D L++W + +
Sbjct: 124 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
Query: 101 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD 154
+ ++GH + V +++ I+S D S+++W + + + + + D
Sbjct: 184 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 240
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 24 AGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
GH A++ +KF P + L S S D +++W G + G D S+D
Sbjct: 148 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADYD 206
Query: 83 LL----VSGSDDKTLKIWELSSGKCLKTLKGHSNY 113
LL +S D +LK+W ++S + + +K +Y
Sbjct: 207 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 241
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 42 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSRLLVSGSDDKTLKIWELSS 100
LA + + +I+I + K GH I+++ + D LL+S S D L++W + +
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Query: 101 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD 154
+ ++GH + V +++ I+S D S+++W + + + + + D
Sbjct: 147 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 24 AGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
GH A++ +KF P + L S S D +++W G + G D S+D
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADYD 169
Query: 83 LL----VSGSDDKTLKIWELSSGKCLKTLKGHSNY 113
LL +S D +LK+W ++S + + +K +Y
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 204
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 42 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSRLLVSGSDDKTLKIWELSS 100
LA + + +I+I + K GH I+++ + D LL+S S D L++W + +
Sbjct: 88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
Query: 101 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD 154
+ ++GH + V +++ I+S D S+++W + + + + + D
Sbjct: 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 24 AGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
GH A++ +KF P + L S S D +++W G + G D S+D
Sbjct: 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADYD 170
Query: 83 LL----VSGSDDKTLKIWELSSGKCLKTLKGHSNY 113
LL +S D +LK+W ++S + + +K +Y
Sbjct: 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 42 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSRLLVSGSDDKTLKIWELSS 100
LA + + +I+I + K GH I+++ + D LL+S S D L++W + +
Sbjct: 83 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 142
Query: 101 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD 154
+ ++GH + V +++ I+S D S+++W + + + + + D
Sbjct: 143 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 199
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 24 AGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
GH A++ +KF P + L S S D +++W G + G D S+D
Sbjct: 107 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADYD 165
Query: 83 LL----VSGSDDKTLKIWELSSGKCLKTLKGHSNY 113
LL +S D +LK+W ++S + + +K +Y
Sbjct: 166 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 200
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 42 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSRLLVSGSDDKTLKIWELSS 100
LA + + +I+I + K GH I+++ + D LL+S S D L++W + +
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Query: 101 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD 154
+ ++GH + V +++ I+S D S+++W + + + + + D
Sbjct: 147 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 24 AGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
GH A++ +KF P + L S S D +++W G + G D S+D
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADYD 169
Query: 83 LL----VSGSDDKTLKIWELSSGKCLKTLKGHSNY 113
LL +S D +LK+W ++S + + +K +Y
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 204
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 93 LKIWEL----SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKC-L 146
LKIW+ + + +L G + C + +P Q +++ +G D + IWDVR G +
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV 273
Query: 147 KTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS 184
L AH + VHF+ + + + S DG WD ++
Sbjct: 274 SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAST 312
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 10/155 (6%)
Query: 84 LVSGSDDKTLKIWELSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
+V+ +D + ++ + ++T+ S+ + F ++ S + ++IWD R
Sbjct: 163 IVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQ-LKIWDFRQ 221
Query: 143 G----KCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
+ +L P+ V H N+ ++ + DG+ IWD G +L+
Sbjct: 222 QGNEPSQILSLTGDRVPLHCVDRHPNQQ-HVVATGGQDGMLSIWDVRQGTMPVSLLKAHE 280
Query: 197 PPVSFVKFSP-NGKYILAATLDNTLKLWDSKVVTP 230
+ V F P N +++ + D +L WD+ P
Sbjct: 281 AEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVP 315
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 149 LPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSFVKFSP 206
+ AH++PV V NR G ++ + S DG L R++ T +G ++ D + +++SP
Sbjct: 175 VKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSP 234
Query: 207 NGKYILAATLDNTLKLWD 224
+G + + TL +++
Sbjct: 235 DGSKLAVVSDKWTLHVFE 252
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDGLCRIWDTASG 185
++ S +++ + DV + K T+P S+P AV + DG+ + V++++ I DTA+
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPXGAV-ISPDGTKVYVANAHSNDVSIIDTATN 64
Query: 186 QCLKTLIDDDNPPVSFVKFSPNGKYI-LAATLDNTLKLWDS 225
+ T+ +P V SP+GK + + +TL + D+
Sbjct: 65 NVIATVPAGSSP--QGVAVSPDGKQVYVTNXASSTLSVIDT 103
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Query: 85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK 144
++ S+ + + +++S K T+ SN + + V+ + V I D T
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPXGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 145 CLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 203
+ T+PA S P V + DG + V++ + DT S T+ +P +
Sbjct: 66 VIATVPAGSSP-QGVAVSPDGKQVYVTNXASSTLSVIDTTSNTVAGTVKTGKSP--LGLA 122
Query: 204 FSPNGK 209
SP+GK
Sbjct: 123 LSPDGK 128
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 108 KGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGK----CLKTLPAHSDPVSAVHFN 162
K H V FNP+ + L+ + S D +V++WD+R K + +P H PV+A +FN
Sbjct: 201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFN 259
Query: 163 -RDGSLIVSSSYDGLCRIW 180
D + ++++ R++
Sbjct: 260 PTDSTKLLTTDQRNEIRVY 278
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 26 HTKAVSSVKFSPNGEWL-ASSSADKLIKIW 54
H V+ +F+P +WL A+SS D +K+W
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLW 232
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 108 KGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGK----CLKTLPAHSDPVSAVHFN 162
K H V FNP+ + L+ + S D +V++WD+R K + +P H PV+A +FN
Sbjct: 200 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFN 258
Query: 163 -RDGSLIVSSSYDGLCRIW 180
D + ++++ R++
Sbjct: 259 PTDSTKLLTTDQRNEIRVY 277
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 26 HTKAVSSVKFSPNGEWL-ASSSADKLIKIW 54
H V+ +F+P +WL A+SS D +K+W
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLW 231
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 51 IKIWGAYDGKF-EKTISGHKLGISDVAWSSDS---RLLVSGSDDKTLKIWELSSGKCL-- 104
I I + KF ++ I GH ++DV DS + +++ D+ +KI +C
Sbjct: 176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP--QCFIV 233
Query: 105 -KTLKGHSNYV--FCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS 153
K L GH ++V CC + L++S D+ + WD +TGK L T +S
Sbjct: 234 DKWLFGHKHFVSSICCG---KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNS 282
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 20 KFT---LAGHTKAVSSV---KFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLG 71
KFT + GH ++ V K S +++ +S D+ IKI Y F +K + GHK
Sbjct: 185 KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKI-SHYPQCFIVDKWLFGHKHF 243
Query: 72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS 111
+S + D LL +G DDK W+ +GK L T +S
Sbjct: 244 VSSICCGKDYLLLSAGGDDKIFA-WDWKTGKNLSTFDYNS 282
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVAWSS 79
+GH V V + G +A+ S+D+ IK++ + + + H I + W+S
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 80 DS--RLLVSGSDDKTLKIWE 97
R++ S S DKT+K+WE
Sbjct: 68 PEYGRIIASASYDKTVKLWE 87
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 66 SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL----SSGKCLKTLKGHSNYVFCCNF-N 120
SGH + DV + R + + S D+ +K+++L S+ + + + H + + ++ +
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 121 PQ-SNLIVSGSFDESVRIWD 139
P+ +I S S+D++V++W+
Sbjct: 68 PEYGRIIASASYDKTVKLWE 87
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVAWSS 79
+GH V V + G +A+ S+D+ IK++ + + + H I + W+S
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 80 DS--RLLVSGSDDKTLKIWE 97
R++ S S DKT+K+WE
Sbjct: 66 PEYGRIIASASYDKTVKLWE 85
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 66 SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL----SSGKCLKTLKGHSNYVFCCNF-N 120
SGH + DV + R + + S D+ +K+++L S+ + + + H + + ++ +
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 121 PQ-SNLIVSGSFDESVRIWD 139
P+ +I S S+D++V++W+
Sbjct: 66 PEYGRIIASASYDKTVKLWE 85
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVAWSS 79
+GH V V + G +A+ S+D+ IK++ + + + H I + W+S
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 80 DS--RLLVSGSDDKTLKIWE 97
R++ S S DKT+K+WE
Sbjct: 68 PEYGRIIASASYDKTVKLWE 87
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 66 SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL----SSGKCLKTLKGHSNYVFCCNF-N 120
SGH + DV + R + + S D+ +K+++L S+ + + + H + + ++ +
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 121 PQ-SNLIVSGSFDESVRIWD 139
P+ +I S S+D++V++W+
Sbjct: 68 PEYGRIIASASYDKTVKLWE 87
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDG----KFEKTISGHKLGISDVAW 77
+ HT + V+ + + +A+ S D +I+++ DG +F + + + + D+ W
Sbjct: 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD--RADVVDMKW 248
Query: 78 SSDSRLLVSGSDDKTLKIWELSSGKCLK--TLKGHSNYVF------CCNFNPQSNLIVSG 129
S+D L SD TL ++E+ + + K LKG N + CNF + V G
Sbjct: 249 STDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRG 308
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 149 LPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSFVKFSP 206
+ AH++P+ V NR ++ + S DG + R++ T G ++ D V +K+S
Sbjct: 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST 250
Query: 207 NGKYILAATLDNTLKLWD 224
+G + + TL +++
Sbjct: 251 DGSKLAVVSDKWTLHVFE 268
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 120 NPQSNLIVSGSFDESVRIWDVRTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGL 176
N + +L+V+ + V I+D+RT + L+ + P H VS++ + + +++ + G+
Sbjct: 179 NEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGI 237
Query: 177 CRIWDTASGQCLKTLIDDDNPPVSFVK----FSPNGKYILAATLDNTLKLWD 224
IWD +++ D+ P++ V+ + N ++ + L +W+
Sbjct: 238 IDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/208 (18%), Positives = 86/208 (41%), Gaps = 27/208 (12%)
Query: 27 TKAVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFE--------------KTISGHKL 70
+ V+ + PN + A SS D I + Y + E K ++
Sbjct: 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170
Query: 71 GISDVAWSSDSR-LLVSGSDDKTLKIWELSSGKCLKTLKGHSNY--VFCCNFNPQSNLIV 127
+ A+ ++ + LLV+ ++ + I+++ + + L+ ++ + V + + +++
Sbjct: 171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLI 230
Query: 128 SGSFDESVRIWDVRTGKCLKT--LPAHSDPVSAVH----FNRDGSLIVSSSYDGLCRIWD 181
G+ + IWD+R +++ H+ P++ V + ++ ++V S IW+
Sbjct: 231 LGTTRGIIDIWDIRFNVLIRSWSFGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGK 209
G C I+ D P S F P K
Sbjct: 290 FVKGHCQYAFINSDEQP-SMEHFLPIEK 316
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSG 129
IS AW+ D + ++ + I+E S K ++ LK H+ V ++ P SN IV+
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70
Query: 130 SFDESVRIWDVR 141
D + +W ++
Sbjct: 71 GTDRNAYVWTLK 82
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD-- 74
+V L H V+ V ++P+ + + D+ +W ++ T+ ++ +
Sbjct: 42 WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC 101
Query: 75 VAWSSDSRLLVSGSDDKTLKIWELSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGS 130
V W+ + + GS + + I C K + V +++P S L+ +GS
Sbjct: 102 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161
Query: 131 FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 172
D RI+ K ++ PA + S + F G L+ SS
Sbjct: 162 CDFKCRIFSAYI-KEVEERPAPTPWGSKMPF---GELMFESS 199
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSG 129
IS AW+ D + ++ + I+E S K ++ LK H+ V ++ P SN IV+
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC 70
Query: 130 SFDESVRIWDVR 141
D + +W ++
Sbjct: 71 GTDRNAYVWTLK 82
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Query: 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD-- 74
+V L H V+ + ++P+ + + D+ +W ++ T+ ++ +
Sbjct: 42 WVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC 101
Query: 75 VAWSSDSRLLVSGSDDKTLKIWELSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGS 130
V W+ + + GS + + I C K + V +++P S L+ +GS
Sbjct: 102 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161
Query: 131 FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 172
D RI+ K ++ PA + S + F G L+ SS
Sbjct: 162 CDFKCRIFSAYI-KEVEERPAPTPWGSKMPF---GELMFESS 199
>pdb|3H2T|A Chain A, Crystal Structure Of Gene Product 6, Baseplate Protein Of
Bacteriophage T4
pdb|3H2T|B Chain B, Crystal Structure Of Gene Product 6, Baseplate Protein Of
Bacteriophage T4
pdb|3H3W|A Chain A, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|B Chain B, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|C Chain C, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|D Chain D, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|E Chain E, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|F Chain F, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|G Chain G, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|H Chain H, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|I Chain I, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|J Chain J, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|K Chain K, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|L Chain L, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3Y|A Chain A, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|B Chain B, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|C Chain C, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|D Chain D, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|E Chain E, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|F Chain F, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|G Chain G, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|H Chain H, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|I Chain I, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|J Chain J, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|K Chain K, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|L Chain L, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
Length = 335
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 146 LKTLPAHSDPVSAVHFNRDGSLIV 169
++T+ +SDP V F RDGSLIV
Sbjct: 285 VQTIELYSDPTDDVIFTRDGSLIV 308
>pdb|1UOE|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
pdb|1UOE|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
Length = 366
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 125 LIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
L+V+GS+ ++R WD + G + P S N G+ +S Y R+
Sbjct: 252 LLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLT 311
Query: 181 DTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232
L + LI + FS L D TL LWD+ V TPA+
Sbjct: 312 TRCQQAGLTIERNLIGAYCTSLDMTGFS----ITLLKVDDETLALWDAPVHTPAL 362
>pdb|1OI2|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI2|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1UOD|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
pdb|1UOD|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
Length = 366
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 125 LIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
L+V+GS+ ++R WD + G + P S N G+ +S Y R+
Sbjct: 252 LLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLT 311
Query: 181 DTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232
L + LI + FS L D TL LWD+ V TPA+
Sbjct: 312 TRCQQAGLTIERNLIGAYCTSLDMTGFS----ITLLKVDDETLALWDAPVHTPAL 362
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 169
H N + + P++ L+ S S D ++RI D + D + ++ ++
Sbjct: 143 HKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKXKDKIGTAYYI--APEVL 200
Query: 170 SSSYDGLCRIWDTA 183
+YD C +W T
Sbjct: 201 HGTYDEKCDVWSTG 214
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 169
H N + + P++ L+ S S D ++RI D + D + ++ ++
Sbjct: 166 HKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYI--APEVL 223
Query: 170 SSSYDGLCRIWDTA 183
+YD C +W T
Sbjct: 224 HGTYDEKCDVWSTG 237
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 169
H N + + P++ L+ S S D ++RI D + D + ++ ++
Sbjct: 167 HKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYI--APEVL 224
Query: 170 SSSYDGLCRIWDTA 183
+YD C +W T
Sbjct: 225 HGTYDEKCDVWSTG 238
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 169
H N + + P++ L+ S S D ++RI D + D + ++ ++
Sbjct: 143 HKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYI--APEVL 200
Query: 170 SSSYDGLCRIWDTA 183
+YD C +W T
Sbjct: 201 HGTYDEKCDVWSTG 214
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 169
H N + + P++ L+ S S D ++RI D + D + ++ ++
Sbjct: 149 HKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYI--APEVL 206
Query: 170 SSSYDGLCRIWDTA 183
+YD C +W T
Sbjct: 207 HGTYDEKCDVWSTG 220
>pdb|3PNK|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNK|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNL|A Chain A, Crystal Structure Of E.coli Dha Kinase Dhak-dhal Complex
Length = 357
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 125 LIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
L+V+GS+ ++R WD + G + P S N G+ +S Y R+
Sbjct: 243 LLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLT 302
Query: 181 DTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232
L + LI + FS L D TL LWD+ V TPA+
Sbjct: 303 TRCQQAGLTIERNLIGAYCTSLDMTGFS----ITLLKVDDETLALWDAPVHTPAL 353
>pdb|3PNO|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNQ|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
Length = 357
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 125 LIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
L+V+GS+ ++R WD + G + P S N G+ +S Y R+
Sbjct: 243 LLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLT 302
Query: 181 DTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232
L + LI + FS L D TL LWD+ V TPA+
Sbjct: 303 TRCQQAGLTIERNLIGAYCTSLDMTGFS----ITLLKVDDETLALWDAPVHTPAL 353
>pdb|3PNM|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
Length = 357
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 125 LIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
L+V+GS+ ++R WD + G + P S N G+ +S Y R+
Sbjct: 243 LLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLT 302
Query: 181 DTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232
L + LI + FS L D TL LWD+ V TPA+
Sbjct: 303 TRCQQAGLTIERNLIGAYCTSLDMTGFS----ITLLKVDDETLALWDAPVHTPAL 353
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 76 AWSSDSRLLVSGSDDKTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133
A++S V+ + ++++E K +T H V C ++ P+SN IV+ S D
Sbjct: 18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR 77
Query: 134 SVRIWDVR 141
+ +++ R
Sbjct: 78 NAYVYEKR 85
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
P + + + RDG L+ SS+Y + +I++T S L+ D +N
Sbjct: 46 PSATISWFRDGQLLPSSNYSNI-KIYNTPSASYLEVTPDSEN 86
>pdb|1Y6Z|A Chain A, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
Protein Pf14_0417
pdb|1Y6Z|B Chain B, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
Protein Pf14_0417
Length = 263
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 148 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
T A+ DP++ VHFN +G + S++ + I + + K + D++
Sbjct: 26 TFKAYDDPLAYVHFNVEGQI----SFNSILYIPGSLPWELSKNMFDEE 69
>pdb|3EU7|A Chain A, Crystal Structure Of A Palb2 BRCA2 COMPLEX
Length = 356
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 175 GLCRIWDTASGQCLKTLIDDDNPPV-----SFVKFSPNGKYILAATLDNTL 220
G IWD GQC L PPV SFVK+S ++LA D +
Sbjct: 305 GTIAIWDLLLGQCTALL-----PPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 175 GLCRIWDTASGQCLKTLIDDDNPPV-----SFVKFSPNGKYILAATLDNTL 220
G IWD GQC L PPV SFVK+S ++LA D +
Sbjct: 305 GTIAIWDLLLGQCTALL-----PPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 20/97 (20%)
Query: 72 ISDVAWSSDSRLLVSGSDDKTLKIWELS-SGKCLKTLKGHSNYV---------------- 114
ISDV +S R +++ D ++K+W+L+ + ++T + H Y+
Sbjct: 288 ISDVKFSHSGRYMMT-RDYLSVKVWDLNMENRPVETYQVHE-YLRSKLCSLYENDCIFDK 345
Query: 115 FCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA 151
F C +N +++++GS++ R++D T + + TL A
Sbjct: 346 FECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEA 381
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,587,597
Number of Sequences: 62578
Number of extensions: 313296
Number of successful extensions: 2266
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 573
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)