Query psy4393
Match_columns 247
No_of_seqs 280 out of 1295
Neff 11.0
Searched_HMMs 29240
Date Sat Aug 17 00:25:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ery_A WD repeat-containing pr 100.0 3.5E-41 1.2E-45 265.3 37.7 228 12-239 8-235 (312)
2 2ynn_A Coatomer subunit beta'; 100.0 1.4E-40 4.9E-45 261.2 35.0 223 18-240 4-230 (304)
3 3ow8_A WD repeat-containing pr 100.0 8.4E-39 2.9E-43 253.0 35.5 220 19-239 72-291 (321)
4 1vyh_C Platelet-activating fac 100.0 4E-39 1.4E-43 263.0 32.4 221 18-239 99-339 (410)
5 1got_B GT-beta; complex (GTP-b 100.0 1.2E-37 4.2E-42 248.2 36.6 219 16-236 44-266 (340)
6 4gqb_B Methylosome protein 50; 100.0 3.1E-38 1.1E-42 251.9 32.3 210 17-228 117-332 (344)
7 3frx_A Guanine nucleotide-bind 100.0 1.5E-37 5.3E-42 245.6 35.8 221 16-238 6-238 (319)
8 1vyh_C Platelet-activating fac 100.0 3.3E-38 1.1E-42 257.6 32.7 219 20-239 143-381 (410)
9 3ow8_A WD repeat-containing pr 100.0 8.1E-38 2.8E-42 247.4 32.9 206 19-225 114-319 (321)
10 2pbi_B Guanine nucleotide-bind 100.0 5.3E-37 1.8E-41 245.8 38.0 222 18-239 55-327 (354)
11 2ynn_A Coatomer subunit beta'; 100.0 2.8E-37 9.5E-42 242.5 34.0 220 19-239 47-271 (304)
12 3frx_A Guanine nucleotide-bind 100.0 1E-36 3.5E-41 240.8 34.9 170 20-190 58-233 (319)
13 1got_B GT-beta; complex (GTP-b 100.0 1.5E-36 5.3E-41 241.8 35.9 220 20-240 90-314 (340)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.5E-37 1.2E-41 246.0 31.9 211 16-226 4-224 (345)
15 2xzm_R RACK1; ribosome, transl 100.0 3.1E-36 1.1E-40 240.3 34.5 211 14-226 8-243 (343)
16 4gqb_B Methylosome protein 50; 100.0 8.4E-37 2.9E-41 243.6 30.9 210 26-238 81-299 (344)
17 2pbi_B Guanine nucleotide-bind 100.0 4.9E-36 1.7E-40 240.3 33.6 204 20-224 147-354 (354)
18 4g56_B MGC81050 protein; prote 100.0 6.4E-37 2.2E-41 245.6 28.0 208 20-229 132-345 (357)
19 3iz6_a 40S ribosomal protein R 100.0 3.3E-37 1.1E-41 249.3 26.0 221 16-237 55-290 (380)
20 1nr0_A Actin interacting prote 100.0 8E-36 2.7E-40 254.9 32.5 215 20-236 52-279 (611)
21 1erj_A Transcriptional repress 100.0 4.3E-35 1.5E-39 237.9 34.2 210 28-239 124-353 (393)
22 4ery_A WD repeat-containing pr 100.0 1.1E-34 3.7E-39 228.2 35.2 221 19-239 57-280 (312)
23 2pm7_B Protein transport prote 100.0 7.3E-36 2.5E-40 233.7 28.1 207 21-228 3-239 (297)
24 2hes_X YDR267CP; beta-propelle 100.0 3.9E-35 1.3E-39 232.8 32.6 204 25-229 56-282 (330)
25 3zwl_B Eukaryotic translation 100.0 8.4E-35 2.9E-39 232.8 34.8 226 11-238 16-260 (369)
26 2hes_X YDR267CP; beta-propelle 100.0 6.2E-35 2.1E-39 231.7 33.7 208 18-228 5-231 (330)
27 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-35 5.9E-40 234.6 30.2 212 21-233 5-343 (351)
28 1erj_A Transcriptional repress 100.0 1.1E-34 3.9E-39 235.4 33.7 202 25-228 62-288 (393)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.9E-35 3E-39 232.1 31.5 204 24-227 58-283 (345)
30 2pm7_B Protein transport prote 100.0 7.5E-35 2.6E-39 227.9 29.8 208 20-227 46-285 (297)
31 3iz6_a 40S ribosomal protein R 100.0 1.3E-35 4.6E-40 239.8 25.3 210 21-230 151-378 (380)
32 3dm0_A Maltose-binding peripla 100.0 3.5E-34 1.2E-38 248.1 35.2 220 17-237 372-602 (694)
33 4h5i_A Guanine nucleotide-exch 100.0 1.1E-34 3.7E-39 233.4 29.6 200 27-228 133-344 (365)
34 2xzm_R RACK1; ribosome, transl 100.0 7.4E-34 2.5E-38 226.6 33.4 207 19-230 68-288 (343)
35 2ymu_A WD-40 repeat protein; u 100.0 2.8E-34 9.6E-39 243.3 32.4 201 19-224 377-577 (577)
36 1nr0_A Actin interacting prote 100.0 1.7E-34 6E-39 246.6 31.3 212 19-232 95-360 (611)
37 4aow_A Guanine nucleotide-bind 100.0 2.8E-33 9.5E-38 222.0 35.8 224 15-239 26-258 (340)
38 3bg1_A Protein SEC13 homolog; 100.0 3.4E-35 1.2E-39 231.8 24.6 210 19-228 49-294 (316)
39 4g56_B MGC81050 protein; prote 100.0 7.3E-35 2.5E-39 233.7 26.5 210 23-234 90-308 (357)
40 3bg1_A Protein SEC13 homolog; 100.0 2.4E-35 8.2E-40 232.7 22.8 206 21-227 7-247 (316)
41 3ei3_B DNA damage-binding prot 100.0 5.3E-34 1.8E-38 230.3 31.0 216 16-235 62-290 (383)
42 3dwl_C Actin-related protein 2 100.0 3.1E-36 1.1E-40 242.7 17.8 204 25-230 9-239 (377)
43 4e54_B DNA damage-binding prot 100.0 6E-35 2E-39 240.0 25.7 217 17-234 109-334 (435)
44 1gxr_A ESG1, transducin-like e 100.0 9.9E-33 3.4E-37 218.3 36.8 214 21-237 91-306 (337)
45 3jrp_A Fusion protein of prote 100.0 3.5E-34 1.2E-38 230.1 28.2 210 20-229 4-242 (379)
46 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-33 5.4E-38 226.1 31.9 215 24-239 5-245 (372)
47 3mkq_A Coatomer beta'-subunit; 100.0 5.5E-34 1.9E-38 250.3 31.6 222 18-239 4-229 (814)
48 1gxr_A ESG1, transducin-like e 100.0 3.7E-33 1.2E-37 220.8 33.2 211 19-232 43-260 (337)
49 2aq5_A Coronin-1A; WD40 repeat 100.0 9.3E-34 3.2E-38 230.5 30.1 208 23-230 77-302 (402)
50 3vl1_A 26S proteasome regulato 100.0 4.9E-34 1.7E-38 232.9 27.1 208 28-235 98-331 (420)
51 3dm0_A Maltose-binding peripla 100.0 6.6E-33 2.3E-37 240.1 34.9 214 19-235 422-640 (694)
52 3vl1_A 26S proteasome regulato 100.0 9.7E-34 3.3E-38 231.1 27.0 207 20-227 132-365 (420)
53 3jrp_A Fusion protein of prote 100.0 6.8E-33 2.3E-37 222.6 31.6 211 18-228 46-288 (379)
54 2ymu_A WD-40 repeat protein; u 100.0 1.4E-32 4.8E-37 232.9 34.5 213 21-239 338-550 (577)
55 3gre_A Serine/threonine-protei 100.0 8.7E-34 3E-38 232.8 26.0 222 15-237 50-302 (437)
56 1sq9_A Antiviral protein SKI8; 100.0 3E-33 1E-37 226.5 25.6 218 17-235 52-330 (397)
57 3mmy_A MRNA export factor; mRN 100.0 1.6E-32 5.5E-37 219.4 29.2 223 16-239 28-316 (368)
58 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-32 9.3E-37 249.4 34.2 221 19-239 607-883 (1249)
59 3odt_A Protein DOA1; ubiquitin 100.0 5.5E-32 1.9E-36 212.1 31.3 220 12-239 3-226 (313)
60 3dw8_B Serine/threonine-protei 100.0 7E-33 2.4E-37 227.7 27.3 210 26-237 27-326 (447)
61 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-32 3.7E-37 244.2 30.4 208 22-233 12-248 (902)
62 3k26_A Polycomb protein EED; W 100.0 1.4E-33 4.7E-38 225.7 22.2 206 19-226 107-365 (366)
63 1sq9_A Antiviral protein SKI8; 100.0 1.3E-32 4.3E-37 222.9 27.7 208 20-228 109-396 (397)
64 2pm9_A Protein WEB1, protein t 100.0 6.1E-33 2.1E-37 225.9 25.7 215 25-239 65-306 (416)
65 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-33 5.5E-38 235.6 21.8 205 21-227 201-428 (524)
66 1k8k_C P40, ARP2/3 complex 41 100.0 3.3E-32 1.1E-36 218.3 28.6 207 19-227 44-274 (372)
67 1r5m_A SIR4-interacting protei 100.0 1.1E-31 3.6E-36 218.6 31.9 201 26-229 107-363 (425)
68 1r5m_A SIR4-interacting protei 100.0 5.1E-32 1.7E-36 220.5 30.0 207 19-226 141-424 (425)
69 4a11_B DNA excision repair pro 100.0 5.6E-32 1.9E-36 219.3 29.8 210 21-231 37-280 (408)
70 3zwl_B Eukaryotic translation 100.0 3.9E-31 1.3E-35 211.5 34.2 218 19-239 66-316 (369)
71 4aow_A Guanine nucleotide-bind 100.0 5.9E-31 2E-35 208.6 33.9 211 18-228 77-338 (340)
72 3dwl_C Actin-related protein 2 100.0 1.5E-33 5.1E-38 227.0 19.2 205 19-226 47-280 (377)
73 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-31 3.4E-36 221.7 29.9 213 24-237 99-354 (450)
74 3dw8_B Serine/threonine-protei 100.0 4.5E-32 1.5E-36 222.8 27.5 216 15-232 69-378 (447)
75 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-31 4.9E-36 235.0 31.8 218 19-237 47-269 (814)
76 3i2n_A WD repeat-containing pr 100.0 8.3E-32 2.8E-36 214.7 27.6 211 19-231 10-247 (357)
77 3k26_A Polycomb protein EED; W 100.0 9.5E-32 3.3E-36 215.0 28.0 206 23-230 14-263 (366)
78 3jro_A Fusion protein of prote 100.0 2E-32 6.8E-37 239.0 25.9 208 21-228 3-239 (753)
79 3gre_A Serine/threonine-protei 100.0 3E-32 1E-36 223.6 25.4 212 25-237 109-369 (437)
80 1pgu_A Actin interacting prote 100.0 2.3E-31 8E-36 226.5 31.8 216 19-237 55-293 (615)
81 4aez_A CDC20, WD repeat-contai 100.0 6.8E-31 2.3E-35 213.6 33.0 204 25-232 132-341 (401)
82 3v7d_B Cell division control p 100.0 6E-31 2.1E-35 217.5 33.0 216 19-240 113-354 (464)
83 3ei3_B DNA damage-binding prot 100.0 1.3E-31 4.4E-36 216.3 27.6 212 21-237 112-349 (383)
84 2w18_A PALB2, fancn, partner a 100.0 1.4E-31 4.9E-36 208.7 26.4 196 28-225 112-355 (356)
85 3v7d_B Cell division control p 100.0 1.6E-30 5.4E-35 215.0 34.4 211 19-235 154-389 (464)
86 4aez_A CDC20, WD repeat-contai 100.0 4.7E-31 1.6E-35 214.6 30.6 211 19-232 168-385 (401)
87 2xyi_A Probable histone-bindin 100.0 1.1E-31 3.7E-36 220.3 27.0 206 21-227 122-353 (430)
88 4e54_B DNA damage-binding prot 100.0 1.6E-32 5.5E-37 225.5 22.1 210 20-231 157-434 (435)
89 2pm9_A Protein WEB1, protein t 100.0 2.8E-32 9.4E-37 222.0 23.1 211 19-230 105-340 (416)
90 4a11_B DNA excision repair pro 100.0 6.8E-31 2.3E-35 212.9 30.5 209 25-234 97-372 (408)
91 2xyi_A Probable histone-bindin 100.0 2.7E-31 9.2E-36 218.0 28.2 210 18-228 172-411 (430)
92 3i2n_A WD repeat-containing pr 100.0 7.7E-32 2.6E-36 214.9 24.1 209 20-230 104-356 (357)
93 3odt_A Protein DOA1; ubiquitin 100.0 9.8E-31 3.4E-35 204.9 29.0 210 20-239 97-308 (313)
94 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.7E-31 9.3E-36 219.1 25.7 207 28-236 5-280 (450)
95 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-30 5.3E-35 208.4 29.0 203 22-228 14-272 (355)
96 1yfq_A Cell cycle arrest prote 100.0 2E-31 6.8E-36 211.6 23.3 209 24-237 8-241 (342)
97 3jro_A Fusion protein of prote 100.0 3.6E-31 1.2E-35 231.0 26.9 210 18-227 44-285 (753)
98 4ggc_A P55CDC, cell division c 100.0 6.3E-30 2.1E-34 200.9 31.1 209 20-230 60-318 (318)
99 1yfq_A Cell cycle arrest prote 100.0 5.7E-31 2E-35 208.9 25.3 212 21-237 50-292 (342)
100 1pgu_A Actin interacting prote 100.0 2.1E-30 7.1E-35 220.7 28.9 206 25-234 16-245 (615)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-30 4.5E-35 211.9 25.9 201 29-229 36-256 (402)
102 2j04_B YDR362CP, TAU91; beta p 100.0 1E-31 3.5E-36 224.7 19.6 207 21-228 260-518 (524)
103 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-29 5.3E-34 231.2 33.1 208 19-227 649-913 (1249)
104 4gga_A P55CDC, cell division c 100.0 1.1E-28 3.6E-33 201.9 33.5 217 20-240 140-366 (420)
105 1p22_A F-BOX/WD-repeat protein 100.0 3.7E-29 1.3E-33 205.5 30.3 200 19-229 165-367 (435)
106 3lrv_A PRE-mRNA-splicing facto 100.0 5.3E-30 1.8E-34 204.2 24.4 197 28-228 77-293 (343)
107 3mmy_A MRNA export factor; mRN 100.0 5.4E-30 1.9E-34 204.8 24.4 211 19-231 78-353 (368)
108 1p22_A F-BOX/WD-repeat protein 100.0 6.6E-29 2.2E-33 204.0 31.2 205 24-239 130-337 (435)
109 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.1E-29 1.4E-33 205.7 29.8 210 20-239 111-320 (445)
110 2j04_A TAU60, YPL007P, hypothe 100.0 9.5E-30 3.3E-34 210.2 24.3 192 25-226 83-296 (588)
111 4gq1_A NUP37; propeller, trans 100.0 3.4E-30 1.2E-34 209.1 20.2 200 23-224 132-386 (393)
112 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.7E-28 1.6E-32 199.3 33.0 207 19-236 151-357 (445)
113 2j04_A TAU60, YPL007P, hypothe 100.0 7.4E-30 2.5E-34 210.8 22.1 205 19-233 7-260 (588)
114 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-28 3.9E-33 196.5 25.9 196 25-226 123-332 (343)
115 4gga_A P55CDC, cell division c 100.0 1.7E-27 5.9E-32 194.7 30.8 211 19-233 181-401 (420)
116 1l0q_A Surface layer protein; 100.0 2.1E-26 7.3E-31 186.1 35.6 216 20-241 25-247 (391)
117 3vu4_A KMHSV2; beta-propeller 100.0 1.8E-27 6.1E-32 190.6 27.6 200 28-228 59-337 (355)
118 4ggc_A P55CDC, cell division c 100.0 1E-26 3.4E-31 182.6 31.0 207 30-240 28-286 (318)
119 4h5i_A Guanine nucleotide-exch 100.0 4.2E-28 1.4E-32 195.0 22.8 216 20-239 66-313 (365)
120 4gq1_A NUP37; propeller, trans 100.0 1.7E-28 5.8E-33 199.1 18.0 204 34-238 96-359 (393)
121 3f3f_A Nucleoporin SEH1; struc 100.0 4.6E-27 1.6E-31 186.0 25.6 172 18-189 48-342 (351)
122 1l0q_A Surface layer protein; 100.0 1.9E-25 6.4E-30 180.5 35.6 209 27-240 73-288 (391)
123 2oaj_A Protein SNI1; WD40 repe 100.0 4.6E-27 1.6E-31 208.4 28.0 198 25-225 56-310 (902)
124 3bws_A Protein LP49; two-domai 100.0 4.9E-26 1.7E-30 186.3 30.6 211 24-238 166-401 (433)
125 3bws_A Protein LP49; two-domai 100.0 7.2E-26 2.5E-30 185.3 27.1 208 28-238 123-345 (433)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.6E-25 1.6E-29 180.1 30.6 204 21-230 172-390 (415)
127 2w18_A PALB2, fancn, partner a 99.9 3.5E-26 1.2E-30 178.4 20.9 162 19-182 170-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 2E-23 7E-28 170.4 25.0 207 20-231 110-348 (415)
129 2oit_A Nucleoporin 214KDA; NH2 99.9 4E-24 1.4E-28 175.4 20.1 200 27-228 36-279 (434)
130 2ojh_A Uncharacterized protein 99.9 5.1E-23 1.7E-27 159.3 23.8 208 22-233 36-264 (297)
131 2ecf_A Dipeptidyl peptidase IV 99.9 6.6E-23 2.3E-27 178.6 23.3 207 27-236 36-330 (741)
132 3vgz_A Uncharacterized protein 99.9 1.4E-21 4.7E-26 155.5 28.1 210 28-240 89-316 (353)
133 3vgz_A Uncharacterized protein 99.9 2.5E-21 8.5E-26 154.0 29.4 210 26-236 39-271 (353)
134 1pby_B Quinohemoprotein amine 99.9 3.9E-21 1.3E-25 151.7 28.8 203 29-238 35-321 (337)
135 1ri6_A Putative isomerase YBHE 99.9 1.1E-20 3.8E-25 149.4 30.2 200 25-226 35-261 (343)
136 1nir_A Nitrite reductase; hemo 99.9 2.3E-21 7.8E-26 163.2 27.5 200 34-235 144-363 (543)
137 3u4y_A Uncharacterized protein 99.9 1.3E-20 4.3E-25 148.9 29.9 205 22-230 35-255 (331)
138 2oit_A Nucleoporin 214KDA; NH2 99.9 9.5E-22 3.2E-26 161.3 21.3 200 25-225 90-331 (434)
139 1ri6_A Putative isomerase YBHE 99.9 2.7E-20 9.3E-25 147.2 29.1 196 28-226 84-307 (343)
140 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-22 6.4E-27 175.2 17.2 203 29-234 18-296 (723)
141 1nir_A Nitrite reductase; hemo 99.9 5.9E-20 2E-24 154.6 31.0 207 30-239 181-421 (543)
142 3u4y_A Uncharacterized protein 99.9 4E-20 1.4E-24 146.0 27.2 205 33-240 3-223 (331)
143 1jmx_B Amine dehydrogenase; ox 99.9 3.2E-20 1.1E-24 147.3 25.7 201 29-237 44-335 (349)
144 3hfq_A Uncharacterized protein 99.9 3.8E-19 1.3E-23 141.4 30.0 202 24-226 36-270 (347)
145 3hfq_A Uncharacterized protein 99.9 4.9E-19 1.7E-23 140.8 29.9 207 24-231 82-323 (347)
146 1xfd_A DIP, dipeptidyl aminope 99.9 9.6E-21 3.3E-25 164.5 20.3 201 22-224 52-341 (723)
147 1jmx_B Amine dehydrogenase; ox 99.9 1.8E-19 6E-24 143.0 24.9 201 32-238 4-295 (349)
148 2ecf_A Dipeptidyl peptidase IV 99.9 5.6E-21 1.9E-25 166.4 17.5 195 29-226 110-366 (741)
149 2ojh_A Uncharacterized protein 99.9 1.4E-20 4.9E-25 145.5 17.6 189 27-218 84-293 (297)
150 1k32_A Tricorn protease; prote 99.9 2.5E-20 8.7E-25 168.0 21.3 197 26-228 294-503 (1045)
151 2z3z_A Dipeptidyl aminopeptida 99.9 3E-20 1E-24 161.0 20.8 195 28-226 82-341 (706)
152 1pby_B Quinohemoprotein amine 99.9 6.7E-19 2.3E-23 138.9 26.5 194 40-238 2-280 (337)
153 2z3z_A Dipeptidyl aminopeptida 99.9 6.6E-20 2.3E-24 158.9 21.0 205 23-229 116-393 (706)
154 1k32_A Tricorn protease; prote 99.9 3.8E-19 1.3E-23 160.4 26.2 199 24-229 375-639 (1045)
155 3o4h_A Acylamino-acid-releasin 99.8 7.6E-20 2.6E-24 155.3 19.7 196 27-231 21-231 (582)
156 3scy_A Hypothetical bacterial 99.8 2.4E-17 8.4E-22 131.7 30.5 199 26-226 48-290 (361)
157 3scy_A Hypothetical bacterial 99.8 2E-17 6.7E-22 132.3 29.3 197 26-226 98-336 (361)
158 3pe7_A Oligogalacturonate lyas 99.8 2E-18 6.7E-23 139.2 22.9 212 20-233 23-279 (388)
159 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.7E-18 2.6E-22 135.1 25.9 203 27-230 39-295 (365)
160 1z68_A Fibroblast activation p 99.8 3E-19 1E-23 155.1 17.0 195 32-231 20-295 (719)
161 3o4h_A Acylamino-acid-releasin 99.8 1.2E-18 4E-23 148.1 18.7 193 24-225 60-274 (582)
162 1q7f_A NHL, brain tumor CG1071 99.8 1.8E-16 6.3E-21 122.6 29.1 200 26-230 75-283 (286)
163 1z68_A Fibroblast activation p 99.8 1.9E-19 6.5E-24 156.4 13.4 197 29-229 61-348 (719)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.7E-17 5.6E-22 133.1 23.3 199 30-228 85-342 (365)
165 4a5s_A Dipeptidyl peptidase 4 99.8 4.4E-18 1.5E-22 148.4 20.1 198 28-229 17-296 (740)
166 1q7f_A NHL, brain tumor CG1071 99.8 2.6E-15 8.8E-20 116.1 30.5 205 26-235 28-245 (286)
167 2oiz_A Aromatic amine dehydrog 99.8 3.1E-16 1E-20 125.6 25.3 206 32-243 54-353 (361)
168 3e5z_A Putative gluconolactona 99.8 5.9E-16 2E-20 120.4 26.1 208 23-238 23-256 (296)
169 3fvz_A Peptidyl-glycine alpha- 99.8 6.8E-16 2.3E-20 122.0 26.7 207 27-234 23-284 (329)
170 3fvz_A Peptidyl-glycine alpha- 99.8 4.5E-16 1.5E-20 123.1 25.6 200 26-227 89-322 (329)
171 4a5s_A Dipeptidyl peptidase 4 99.8 2.8E-17 9.5E-22 143.4 17.9 199 31-231 65-357 (740)
172 3c5m_A Oligogalacturonate lyas 99.8 1.8E-17 6.3E-22 133.6 15.1 202 30-233 38-279 (396)
173 2dg1_A DRP35, lactonase; beta 99.8 1.3E-14 4.6E-19 114.5 31.1 214 22-237 39-272 (333)
174 3azo_A Aminopeptidase; POP fam 99.7 8.1E-17 2.8E-21 138.6 18.7 194 32-229 81-327 (662)
175 2gop_A Trilobed protease; beta 99.7 7.1E-16 2.4E-20 122.4 22.7 191 28-233 59-297 (347)
176 2xdw_A Prolyl endopeptidase; a 99.7 1.2E-15 4E-20 132.6 25.9 208 26-235 123-376 (710)
177 3azo_A Aminopeptidase; POP fam 99.7 5.1E-17 1.7E-21 139.8 17.2 208 22-231 18-278 (662)
178 3pe7_A Oligogalacturonate lyas 99.7 1.2E-15 4E-20 122.9 21.8 209 26-236 79-338 (388)
179 3no2_A Uncharacterized protein 99.7 4.3E-15 1.5E-19 114.5 23.7 192 37-235 3-203 (276)
180 1rwi_B Serine/threonine-protei 99.7 5.4E-15 1.8E-19 113.2 23.2 201 28-230 67-267 (270)
181 3dsm_A Uncharacterized protein 99.7 1.1E-14 3.7E-19 115.1 25.2 213 27-245 83-319 (328)
182 3e5z_A Putative gluconolactona 99.7 4.3E-14 1.5E-18 109.9 26.4 198 23-228 64-287 (296)
183 2z2n_A Virginiamycin B lyase; 99.7 7.2E-13 2.5E-17 102.5 33.1 204 20-229 7-214 (299)
184 3c5m_A Oligogalacturonate lyas 99.7 9.8E-16 3.4E-20 123.5 17.2 195 33-233 86-335 (396)
185 1rwi_B Serine/threonine-protei 99.7 3E-14 1E-18 109.0 23.9 199 29-230 25-225 (270)
186 2z2n_A Virginiamycin B lyase; 99.7 2.4E-12 8.3E-17 99.6 33.5 197 25-226 54-254 (299)
187 2dg1_A DRP35, lactonase; beta 99.7 9.2E-15 3.2E-19 115.4 19.2 195 28-227 6-213 (333)
188 2bkl_A Prolyl endopeptidase; m 99.7 5.4E-15 1.9E-19 128.1 19.3 198 25-226 118-348 (695)
189 3dsm_A Uncharacterized protein 99.7 1.4E-13 4.8E-18 108.7 24.6 196 29-230 45-256 (328)
190 1xip_A Nucleoporin NUP159; bet 99.7 7.7E-15 2.6E-19 117.5 17.2 174 29-215 39-232 (388)
191 2mad_H Methylamine dehydrogena 99.6 2.5E-12 8.5E-17 103.3 31.4 206 32-244 70-368 (373)
192 1qks_A Cytochrome CD1 nitrite 99.6 1.3E-12 4.3E-17 110.2 30.4 197 37-235 165-381 (567)
193 3no2_A Uncharacterized protein 99.6 8.3E-13 2.8E-17 101.7 26.8 212 19-236 27-261 (276)
194 2gop_A Trilobed protease; beta 99.6 1.5E-13 5.1E-18 108.9 22.2 181 30-226 106-330 (347)
195 2qc5_A Streptogramin B lactona 99.6 2.8E-11 9.6E-16 93.6 33.5 200 23-226 57-259 (300)
196 2xdw_A Prolyl endopeptidase; a 99.6 4.4E-13 1.5E-17 116.4 25.2 198 30-229 173-416 (710)
197 2qc5_A Streptogramin B lactona 99.6 3E-11 1E-15 93.4 33.0 203 19-225 11-216 (300)
198 1yr2_A Prolyl oligopeptidase; 99.6 2.5E-13 8.6E-18 118.5 23.2 197 26-226 161-392 (741)
199 3hrp_A Uncharacterized protein 99.6 7.7E-12 2.6E-16 101.7 27.5 200 28-231 131-358 (409)
200 1qks_A Cytochrome CD1 nitrite 99.6 2.7E-11 9.1E-16 102.2 31.4 196 28-227 197-421 (567)
201 3sjl_D Methylamine dehydrogena 99.6 3.4E-12 1.2E-16 101.9 24.6 211 32-244 82-380 (386)
202 2oiz_A Aromatic amine dehydrog 99.6 1.9E-12 6.6E-17 103.5 23.1 111 38-150 14-149 (361)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.1E-11 3.6E-16 96.8 26.1 210 24-237 14-266 (314)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 7.9E-12 2.7E-16 97.5 24.4 197 26-227 69-299 (314)
205 3g4e_A Regucalcin; six bladed 99.5 6.7E-11 2.3E-15 91.9 29.1 208 25-237 10-239 (297)
206 2bkl_A Prolyl endopeptidase; m 99.5 5.3E-13 1.8E-17 115.6 17.7 199 31-232 171-402 (695)
207 3dr2_A Exported gluconolactona 99.5 1.7E-11 5.8E-16 95.7 24.6 207 23-237 40-276 (305)
208 3g4e_A Regucalcin; six bladed 99.5 4.1E-11 1.4E-15 93.2 25.5 187 26-216 52-261 (297)
209 3c75_H MADH, methylamine dehyd 99.5 1.4E-11 4.9E-16 99.9 23.5 201 32-234 122-409 (426)
210 1xip_A Nucleoporin NUP159; bet 99.5 6.7E-11 2.3E-15 94.8 25.2 134 25-170 86-230 (388)
211 3iuj_A Prolyl endopeptidase; h 99.5 7.4E-12 2.5E-16 108.5 20.8 199 25-229 126-361 (693)
212 2hz6_A Endoplasmic reticulum t 99.5 2.8E-14 9.5E-19 114.6 4.3 188 38-235 8-200 (369)
213 1yr2_A Prolyl oligopeptidase; 99.4 1.3E-11 4.6E-16 107.6 20.7 197 31-230 212-444 (741)
214 2ghs_A AGR_C_1268P; regucalcin 99.4 6E-10 2E-14 87.8 27.5 201 29-237 50-269 (326)
215 1mda_H Methylamine dehydrogena 99.4 4.2E-11 1.4E-15 95.5 20.7 206 32-243 69-362 (368)
216 3dr2_A Exported gluconolactona 99.4 2.1E-10 7.1E-15 89.5 24.0 190 25-222 83-302 (305)
217 3hrp_A Uncharacterized protein 99.4 3.6E-10 1.2E-14 91.9 25.6 191 33-225 176-408 (409)
218 2ghs_A AGR_C_1268P; regucalcin 99.4 8.8E-10 3E-14 86.8 26.8 184 27-217 89-292 (326)
219 2iwa_A Glutamine cyclotransfer 99.4 1.1E-09 3.8E-14 83.1 25.6 205 17-228 9-238 (266)
220 2qe8_A Uncharacterized protein 99.4 9.6E-11 3.3E-15 93.0 19.7 199 25-224 64-318 (343)
221 2qe8_A Uncharacterized protein 99.4 2.4E-10 8.1E-15 90.7 20.9 202 28-230 17-281 (343)
222 3sjl_D Methylamine dehydrogena 99.4 2E-10 6.8E-15 91.8 20.2 191 33-229 38-258 (386)
223 2mad_H Methylamine dehydrogena 99.4 2.3E-09 8E-14 86.0 26.5 187 34-228 27-244 (373)
224 3c75_H MADH, methylamine dehyd 99.3 4.3E-10 1.5E-14 91.2 19.0 186 37-228 82-296 (426)
225 3nol_A Glutamine cyclotransfer 99.3 4.7E-09 1.6E-13 78.9 22.7 193 17-216 31-244 (262)
226 2ece_A 462AA long hypothetical 99.3 3.3E-09 1.1E-13 85.7 22.2 189 37-226 93-351 (462)
227 3iuj_A Prolyl endopeptidase; h 99.3 1.4E-09 4.9E-14 94.2 21.3 198 31-233 178-411 (693)
228 3mbr_X Glutamine cyclotransfer 99.2 6E-08 2.1E-12 72.3 26.3 195 14-215 6-222 (243)
229 3nok_A Glutaminyl cyclase; bet 99.2 5.5E-09 1.9E-13 78.6 20.0 180 28-215 55-253 (268)
230 1yiq_A Quinohemoprotein alcoho 99.2 8.4E-09 2.9E-13 89.2 22.2 189 48-238 182-516 (689)
231 1kb0_A Quinohemoprotein alcoho 99.2 4.9E-09 1.7E-13 90.5 20.7 189 48-238 189-518 (677)
232 1npe_A Nidogen, entactin; glyc 99.2 2.4E-07 8.2E-12 70.6 27.1 192 40-233 2-204 (267)
233 1npe_A Nidogen, entactin; glyc 99.1 7.5E-07 2.6E-11 67.8 29.4 202 29-235 37-246 (267)
234 2ece_A 462AA long hypothetical 99.1 1E-07 3.6E-12 77.0 24.1 185 30-215 140-399 (462)
235 2fp8_A Strictosidine synthase; 99.1 4E-07 1.4E-11 71.3 26.2 211 21-237 12-278 (322)
236 1kb0_A Quinohemoprotein alcoho 99.1 2.1E-08 7.3E-13 86.5 20.2 195 31-226 246-566 (677)
237 1fwx_A Nitrous oxide reductase 99.1 5.5E-08 1.9E-12 81.2 21.0 186 37-227 99-361 (595)
238 2hz6_A Endoplasmic reticulum t 99.1 2.1E-11 7E-16 97.8 0.6 144 80-231 8-153 (369)
239 3hxj_A Pyrrolo-quinoline quino 99.0 5.3E-08 1.8E-12 76.2 19.6 192 26-229 135-326 (330)
240 1yiq_A Quinohemoprotein alcoho 99.0 4.6E-08 1.6E-12 84.6 20.1 181 32-213 239-534 (689)
241 3qqz_A Putative uncharacterize 99.0 2.7E-06 9.2E-11 64.1 27.9 210 13-225 9-251 (255)
242 1fwx_A Nitrous oxide reductase 99.0 1.5E-07 5.1E-12 78.6 19.6 198 28-229 134-433 (595)
243 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2.4E-07 8.3E-12 74.1 20.5 191 38-233 52-264 (376)
244 3q7m_A Lipoprotein YFGL, BAMB; 98.9 6.6E-07 2.2E-11 71.6 22.6 188 41-236 145-346 (376)
245 2iwa_A Glutamine cyclotransfer 98.9 5.5E-07 1.9E-11 68.3 20.6 160 72-236 23-190 (266)
246 3hxj_A Pyrrolo-quinoline quino 98.9 7E-07 2.4E-11 69.8 22.0 185 39-235 107-291 (330)
247 2fp8_A Strictosidine synthase; 98.9 1.4E-06 4.8E-11 68.2 23.6 199 29-232 81-318 (322)
248 2p4o_A Hypothetical protein; p 98.9 5.1E-06 1.7E-10 64.6 26.4 201 19-226 24-241 (306)
249 2xe4_A Oligopeptidase B; hydro 98.9 3.3E-07 1.1E-11 80.1 20.8 192 29-225 175-398 (751)
250 1kv9_A Type II quinohemoprotei 98.9 5.6E-07 1.9E-11 77.6 21.2 189 48-238 177-499 (668)
251 1mda_H Methylamine dehydrogena 98.9 1.6E-07 5.5E-12 74.9 16.3 91 50-142 47-158 (368)
252 3nol_A Glutamine cyclotransfer 98.8 8E-07 2.7E-11 66.8 18.2 160 72-237 45-211 (262)
253 3v64_C Agrin; beta propeller, 98.8 1.5E-05 5.2E-10 63.2 26.4 201 28-230 73-278 (349)
254 3v65_B Low-density lipoprotein 98.8 2E-05 6.9E-10 63.4 25.6 205 28-234 116-325 (386)
255 3nok_A Glutaminyl cyclase; bet 98.7 2.9E-06 9.9E-11 63.9 18.6 158 72-236 57-219 (268)
256 2ad6_A Methanol dehydrogenase 98.7 3E-06 1E-10 71.7 20.9 196 40-238 161-505 (571)
257 3mbr_X Glutamine cyclotransfer 98.7 5.7E-06 1.9E-10 61.6 19.8 159 72-236 23-188 (243)
258 3amr_A 3-phytase; beta-propell 98.7 2.9E-05 1E-09 60.9 23.7 191 39-234 40-271 (355)
259 1kv9_A Type II quinohemoprotei 98.7 1.8E-06 6.2E-11 74.4 17.7 192 39-232 66-338 (668)
260 1ijq_A LDL receptor, low-densi 98.7 6.8E-05 2.3E-09 58.5 29.7 204 27-233 29-244 (316)
261 1w6s_A Methanol dehydrogenase 98.6 1.1E-05 3.8E-10 68.5 21.0 189 47-238 180-514 (599)
262 3p5b_L Low density lipoprotein 98.6 0.00013 4.4E-09 58.9 30.4 207 27-235 111-328 (400)
263 3v64_C Agrin; beta propeller, 98.6 0.00012 4E-09 58.0 27.2 201 29-233 35-240 (349)
264 1ijq_A LDL receptor, low-densi 98.6 0.00011 3.8E-09 57.3 27.0 189 42-233 4-201 (316)
265 1flg_A Protein (quinoprotein e 98.6 1.9E-05 6.4E-10 67.0 21.4 146 91-239 291-528 (582)
266 3sov_A LRP-6, low-density lipo 98.6 0.00013 4.4E-09 57.1 25.8 205 29-235 36-246 (318)
267 3tc9_A Hypothetical hydrolase; 98.6 4E-05 1.4E-09 62.5 22.2 152 29-183 138-300 (430)
268 4a2l_A BT_4663, two-component 98.5 0.00022 7.4E-09 62.8 27.8 197 28-230 310-529 (795)
269 4a2l_A BT_4663, two-component 98.5 0.00021 7.3E-09 62.8 27.7 192 28-228 357-572 (795)
270 1k3i_A Galactose oxidase precu 98.5 1.6E-05 5.5E-10 68.4 19.4 113 32-144 190-325 (656)
271 3v65_B Low-density lipoprotein 98.5 0.00017 5.8E-09 58.0 24.1 199 31-233 80-283 (386)
272 2p4o_A Hypothetical protein; p 98.5 0.00019 6.4E-09 55.7 24.9 187 28-218 72-279 (306)
273 2p9w_A MAL S 1 allergenic prot 98.5 0.00023 7.7E-09 55.4 24.0 206 21-227 6-265 (334)
274 2ad6_A Methanol dehydrogenase 98.5 1.9E-05 6.5E-10 66.8 18.5 179 33-213 240-523 (571)
275 1w6s_A Methanol dehydrogenase 98.5 3.7E-05 1.3E-09 65.3 20.2 194 39-235 62-350 (599)
276 4hw6_A Hypothetical protein, I 98.5 8.6E-05 2.9E-09 60.6 21.7 196 29-226 140-373 (433)
277 2p9w_A MAL S 1 allergenic prot 98.4 5.6E-05 1.9E-09 58.8 18.9 155 72-227 15-215 (334)
278 3p5b_L Low density lipoprotein 98.4 0.00039 1.3E-08 56.1 27.7 191 41-234 85-284 (400)
279 3tc9_A Hypothetical hydrolase; 98.4 2E-05 6.8E-10 64.3 16.9 154 72-227 139-301 (430)
280 3m0c_C LDL receptor, low-densi 98.4 0.0011 3.9E-08 58.1 29.9 205 27-233 423-638 (791)
281 2xe4_A Oligopeptidase B; hydro 98.4 8.3E-05 2.8E-09 65.1 20.2 200 31-231 224-462 (751)
282 3v9f_A Two-component system se 98.3 0.00046 1.6E-08 60.6 24.9 195 28-229 363-570 (781)
283 1flg_A Protein (quinoprotein e 98.3 0.00039 1.3E-08 59.0 23.3 195 39-236 68-364 (582)
284 1n7d_A LDL receptor, low-densi 98.3 8E-06 2.7E-10 70.8 12.0 207 28-236 406-623 (699)
285 4hw6_A Hypothetical protein, I 98.3 0.001 3.4E-08 54.3 25.1 196 27-226 181-432 (433)
286 3qqz_A Putative uncharacterize 98.3 0.00033 1.1E-08 52.7 19.3 169 65-235 22-211 (255)
287 3v9f_A Two-component system se 98.3 0.0018 6.3E-08 56.8 28.1 197 27-229 312-526 (781)
288 3m0c_C LDL receptor, low-densi 98.2 0.0021 7.2E-08 56.4 26.9 185 48-234 403-596 (791)
289 2xbg_A YCF48-like protein; pho 98.2 0.0012 4E-08 51.7 25.0 190 28-225 122-320 (327)
290 3sov_A LRP-6, low-density lipo 98.1 0.0015 5.1E-08 51.0 21.6 163 29-192 80-246 (318)
291 3s94_A LRP-6, low-density lipo 98.1 0.0031 1.1E-07 53.9 24.3 203 27-233 39-249 (619)
292 1k3i_A Galactose oxidase precu 98.1 0.00088 3E-08 57.6 20.8 187 30-216 245-530 (656)
293 3sre_A PON1, serum paraoxonase 98.1 0.0024 8.1E-08 50.5 22.2 194 29-226 51-297 (355)
294 4a0p_A LRP6, LRP-6, low-densit 98.0 0.0063 2.1E-07 52.1 26.9 203 28-235 37-245 (628)
295 3kya_A Putative phosphatase; s 97.9 0.0057 2E-07 50.5 22.9 152 30-182 141-339 (496)
296 1n7d_A LDL receptor, low-densi 97.9 0.00012 4.2E-09 63.4 11.4 185 48-234 385-578 (699)
297 2vpj_A Kelch-like protein 12; 97.9 0.0022 7.6E-08 49.3 17.6 184 38-229 62-280 (301)
298 4a0p_A LRP6, LRP-6, low-densit 97.8 0.011 3.8E-07 50.6 29.1 204 28-235 340-557 (628)
299 3ii7_A Kelch-like protein 7; p 97.8 0.003 1E-07 48.7 17.7 184 38-229 55-274 (306)
300 2xn4_A Kelch-like protein 2; s 97.8 0.0024 8.3E-08 49.1 16.7 184 38-229 61-278 (302)
301 3kya_A Putative phosphatase; s 97.8 0.0046 1.6E-07 51.1 18.3 154 72-226 141-340 (496)
302 3amr_A 3-phytase; beta-propell 97.8 0.0075 2.6E-07 47.4 18.6 141 80-226 39-209 (355)
303 3pbp_A Nucleoporin NUP82; beta 97.6 0.013 4.5E-07 47.2 18.4 145 78-224 29-209 (452)
304 3s94_A LRP-6, low-density lipo 97.6 0.025 8.6E-07 48.3 26.3 199 28-230 349-554 (619)
305 4asc_A Kelch repeat and BTB do 97.6 0.014 4.7E-07 45.2 18.3 188 36-229 43-279 (315)
306 3ii7_A Kelch-like protein 7; p 97.5 0.012 4E-07 45.3 17.0 180 41-228 14-226 (306)
307 2vpj_A Kelch-like protein 12; 97.5 0.007 2.4E-07 46.4 15.6 184 38-229 14-233 (301)
308 2be1_A Serine/threonine-protei 97.5 0.00077 2.6E-08 52.9 9.2 113 40-152 11-140 (339)
309 2xn4_A Kelch-like protein 2; s 97.4 0.013 4.5E-07 44.9 15.9 182 40-229 17-231 (302)
310 1tl2_A L10, protein (tachylect 97.4 0.022 7.4E-07 41.7 15.3 142 28-177 41-203 (236)
311 1zgk_A Kelch-like ECH-associat 97.4 0.018 6.3E-07 44.3 16.2 184 38-229 70-289 (308)
312 1zgk_A Kelch-like ECH-associat 97.4 0.011 3.7E-07 45.6 14.8 184 38-229 24-242 (308)
313 2ism_A Putative oxidoreductase 97.3 0.046 1.6E-06 43.1 22.4 103 25-130 28-153 (352)
314 2woz_A Kelch repeat and BTB do 97.3 0.041 1.4E-06 42.5 18.1 188 36-229 54-289 (318)
315 2xbg_A YCF48-like protein; pho 97.3 0.043 1.5E-06 42.7 23.7 184 28-221 80-273 (327)
316 1tl2_A L10, protein (tachylect 97.2 0.032 1.1E-06 40.8 18.5 143 70-220 41-203 (236)
317 3s25_A Hypothetical 7-bladed b 97.1 0.047 1.6E-06 42.1 15.7 177 33-229 58-257 (302)
318 2ism_A Putative oxidoreductase 97.0 0.085 2.9E-06 41.6 21.5 183 27-215 74-333 (352)
319 2uvk_A YJHT; unknown function, 96.9 0.041 1.4E-06 43.3 14.4 141 91-233 168-348 (357)
320 3pbp_A Nucleoporin NUP82; beta 96.9 0.12 4.2E-06 41.6 20.2 143 36-181 29-209 (452)
321 4asc_A Kelch repeat and BTB do 96.9 0.096 3.3E-06 40.3 19.4 180 42-229 8-223 (315)
322 3sre_A PON1, serum paraoxonase 96.8 0.14 4.8E-06 40.4 21.2 153 70-226 50-251 (355)
323 2g8s_A Glucose/sorbosone dehyd 96.7 0.048 1.7E-06 43.0 13.4 103 27-130 17-148 (353)
324 2zwa_A Leucine carboxyl methyl 96.7 0.13 4.6E-06 44.5 16.7 192 37-229 396-637 (695)
325 1cru_A Protein (soluble quinop 96.6 0.23 7.8E-06 40.7 20.7 111 21-131 20-163 (454)
326 3a9g_A Putative uncharacterize 96.5 0.23 8E-06 39.1 25.3 184 28-215 73-330 (354)
327 3a9g_A Putative uncharacterize 96.4 0.25 8.7E-06 38.9 25.3 199 23-228 24-297 (354)
328 2woz_A Kelch repeat and BTB do 96.4 0.23 7.7E-06 38.3 18.1 174 50-229 25-233 (318)
329 3s25_A Hypothetical 7-bladed b 96.2 0.3 1E-05 37.6 17.8 175 36-230 22-219 (302)
330 1cru_A Protein (soluble quinop 96.1 0.43 1.5E-05 39.0 20.7 104 69-172 26-162 (454)
331 2xzh_A Clathrin heavy chain 1; 95.7 0.56 1.9E-05 36.6 19.3 158 27-185 151-333 (365)
332 1xi4_A Clathrin heavy chain; a 95.6 0.41 1.4E-05 44.7 14.6 193 33-231 71-293 (1630)
333 2xzh_A Clathrin heavy chain 1; 95.5 0.68 2.3E-05 36.1 28.4 197 32-234 71-297 (365)
334 3das_A Putative oxidoreductase 95.4 0.73 2.5E-05 36.2 22.0 109 22-130 26-158 (347)
335 2uvk_A YJHT; unknown function, 95.4 0.26 8.7E-06 38.6 11.5 93 38-132 19-128 (357)
336 1bpo_A Protein (clathrin); cla 95.4 0.9 3.1E-05 36.9 27.2 196 32-233 70-295 (494)
337 2be1_A Serine/threonine-protei 95.3 0.089 3.1E-06 41.2 8.4 114 124-237 11-140 (339)
338 3ott_A Two-component system se 95.0 1.7 5.7E-05 38.0 24.9 190 28-229 63-262 (758)
339 2g8s_A Glucose/sorbosone dehyd 94.3 1.5 5.2E-05 34.4 22.5 67 155-221 272-348 (353)
340 1bpo_A Protein (clathrin); cla 94.1 2 6.7E-05 35.0 21.8 158 27-185 150-332 (494)
341 2zwa_A Leucine carboxyl methyl 94.1 2.4 8.2E-05 36.7 15.1 150 79-229 396-579 (695)
342 3das_A Putative oxidoreductase 94.0 1.7 5.9E-05 34.1 18.0 109 107-215 27-158 (347)
343 3sbq_A Nitrous-oxide reductase 93.9 0.85 2.9E-05 38.3 11.1 100 72-172 325-453 (638)
344 1xi4_A Clathrin heavy chain; a 92.3 4 0.00014 38.5 13.9 156 28-184 151-331 (1630)
345 3ei3_A DNA damage-binding prot 91.9 7.8 0.00027 35.8 28.5 204 25-236 372-600 (1158)
346 2wg3_C Hedgehog-interacting pr 90.5 6.2 0.00021 32.3 12.4 105 28-132 14-159 (463)
347 3ott_A Two-component system se 87.6 13 0.00046 32.2 26.1 192 29-229 192-403 (758)
348 3zwu_A Alkaline phosphatase PH 86.6 4.3 0.00015 34.4 9.1 60 156-215 478-549 (592)
349 4a9v_A PHOX; hydrolase, beta-p 84.3 8.9 0.0003 32.4 9.7 61 155-215 477-549 (592)
350 2wg3_C Hedgehog-interacting pr 84.1 16 0.00055 29.9 14.5 104 70-173 14-158 (463)
351 4gq2_M Nucleoporin NUP120; bet 81.2 31 0.0011 31.1 13.0 37 71-107 237-273 (950)
352 3ei3_A DNA damage-binding prot 80.8 36 0.0012 31.6 27.6 186 27-215 553-755 (1158)
353 1suu_A DNA gyrase subunit A; t 80.2 18 0.00061 27.8 21.7 187 37-226 6-230 (312)
354 3qhy_B Beta-lactamase inhibito 79.1 18 0.00062 27.2 11.9 147 71-230 103-249 (282)
355 3b7f_A Glycosyl hydrolase, BNR 78.3 23 0.00078 27.9 19.9 59 155-215 233-297 (394)
356 3qhy_B Beta-lactamase inhibito 76.9 21 0.00073 26.8 11.7 182 29-227 25-207 (282)
357 3uc1_A DNA gyrase subunit A; D 74.5 28 0.00095 27.0 17.3 145 80-226 108-278 (327)
358 3zwu_A Alkaline phosphatase PH 74.5 25 0.00087 29.8 9.6 58 30-87 478-548 (592)
359 3no0_A DNA gyrase subunit A; D 72.9 27 0.00094 26.2 19.5 194 29-227 25-246 (276)
360 4fhn_B Nucleoporin NUP120; pro 72.5 23 0.0008 32.6 9.7 36 72-107 240-275 (1139)
361 3sbq_A Nitrous-oxide reductase 72.1 45 0.0015 28.3 21.6 71 157-227 326-408 (638)
362 4fhn_B Nucleoporin NUP120; pro 71.7 24 0.00081 32.6 9.6 35 115-149 241-275 (1139)
363 4a9v_A PHOX; hydrolase, beta-p 67.7 55 0.0019 27.7 10.0 60 29-88 477-549 (592)
364 3uc1_A DNA gyrase subunit A; D 67.4 41 0.0014 26.0 18.3 154 28-183 95-278 (327)
365 3f7f_A Nucleoporin NUP120; nuc 60.8 25 0.00086 30.6 6.9 37 198-236 223-259 (729)
366 3b7f_A Glycosyl hydrolase, BNR 60.6 59 0.002 25.5 21.0 177 41-223 24-258 (394)
367 3f7f_A Nucleoporin NUP120; nuc 54.7 33 0.0011 29.8 6.6 38 28-67 222-259 (729)
368 3no0_A DNA gyrase subunit A; D 53.6 68 0.0023 24.0 17.9 153 27-183 67-245 (276)
369 4gq2_M Nucleoporin NUP120; bet 51.4 1.4E+02 0.0048 27.0 20.8 37 113-149 237-273 (950)
370 3q6k_A 43.2 kDa salivary prote 50.8 92 0.0031 24.7 21.2 136 92-227 124-306 (381)
371 3q6k_A 43.2 kDa salivary prote 47.3 1E+02 0.0036 24.4 22.6 189 26-215 85-342 (381)
372 1q47_A Semaphorin 3A; beta pro 47.2 79 0.0027 26.1 7.7 56 124-179 422-487 (495)
373 1q47_A Semaphorin 3A; beta pro 46.9 73 0.0025 26.3 7.4 56 167-222 423-487 (495)
374 1wp5_A Topoisomerase IV; broke 46.2 99 0.0034 23.8 19.9 187 37-226 3-224 (323)
375 1zi0_A DNA gyrase subunit A; b 45.6 98 0.0033 23.5 22.3 186 37-225 1-224 (307)
376 3al9_A Plexin-A2; beta-propell 44.4 49 0.0017 27.7 6.1 67 156-222 402-476 (539)
377 3ol2_B Plexin-B1; beta-propell 40.6 80 0.0027 26.3 6.7 67 156-222 389-461 (528)
378 3nvq_A Semaphorin-7A; beta-pro 35.5 1.3E+02 0.0045 25.5 7.3 57 166-222 381-444 (590)
379 3nvq_A Semaphorin-7A; beta-pro 35.4 1.7E+02 0.0059 24.8 7.9 56 124-179 381-444 (590)
380 1olz_A Semaphorin 4D; developm 34.2 1.2E+02 0.0042 26.1 7.1 56 167-222 417-477 (663)
381 3al9_A Plexin-A2; beta-propell 32.6 87 0.003 26.2 5.8 57 123-179 413-476 (539)
382 4gz8_A Semaphorin-3A; multi-do 30.5 1.5E+02 0.005 25.7 6.9 56 167-222 431-495 (667)
383 1olz_A Semaphorin 4D; developm 30.5 2.6E+02 0.009 24.1 8.5 55 124-178 416-476 (663)
384 1sqj_A OXG-RCBH, oligoxylogluc 25.4 3.5E+02 0.012 23.8 22.1 145 27-174 14-190 (789)
385 4gz8_A Semaphorin-3A; multi-do 25.2 1.9E+02 0.0065 25.0 6.7 56 124-179 430-495 (667)
386 3oky_A Plexin-A2; transmembran 25.0 2E+02 0.0069 24.9 6.8 57 166-222 413-475 (681)
387 4hvt_A Ritya.17583.B, post-pro 23.5 3.7E+02 0.012 23.4 19.3 194 30-228 131-382 (711)
388 3mez_B Mannose-specific lectin 22.3 1.5E+02 0.0051 18.5 7.4 24 202-227 61-84 (113)
389 4h3o_A Lectin; cadmium, plant 22.0 1.5E+02 0.005 18.2 10.0 46 74-129 54-99 (105)
No 1
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.5e-41 Score=265.29 Aligned_cols=228 Identities=90% Similarity=1.384 Sum_probs=213.3
Q ss_pred CCCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393 12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK 91 (247)
Q Consensus 12 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 91 (247)
..+|++.+.+++.+|.+.|.+++|+|++++|++++.||.|++|+..+++....+.+|...|.+++|+|++++|++++.|+
T Consensus 8 ~~~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp -CCCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCC
Confidence 45677889999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393 92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 171 (247)
Q Consensus 92 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 171 (247)
.|++||+.+++.+..+.+|...+.++.|+|+++++++++.|+.|++||+++++.+..+..|..++.+++|+|++.+++++
T Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
+.||.|++||+++++.+..+...+..++..++|+|++++|++++.||.|++||.+...++..+..+..
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 235 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence 99999999999999888777666777899999999999999999999999999999888777766544
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-40 Score=261.22 Aligned_cols=223 Identities=20% Similarity=0.398 Sum_probs=203.4
Q ss_pred eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
.+..++.+|.+.|.+++|+|++++|++++.||.|++||..++.....+..|..+|.+++|+|++++|++++.|+.|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45677889999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC-eEEEeecCCCCCeEEEEECC-CCCEEEEecCCC
Q psy4393 98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 175 (247)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 175 (247)
+.+++.+..+.+|...|.+++|+|++.++++|+.|+.|++||++++ .....+..|...|.+++|+| ++..|++|+.|+
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999887 45567889999999999999 678999999999
Q ss_pred eEEEEeCCCceeeeeeccCCCCCeEEEEECC--CCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL 240 (247)
Q Consensus 176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 240 (247)
.|++||+++.+....+...+...+..+.|+| ++++|++++.|+.|++||.+...++..+..+...
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~ 230 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC
Confidence 9999999887766666656667788899986 7789999999999999999999888887776554
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.4e-39 Score=253.02 Aligned_cols=220 Identities=29% Similarity=0.473 Sum_probs=203.6
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
...++.+|...|.+++|++++.++++++.|+.|++||..+++....+..+...+.+++|+|+++++++++.++.+++|++
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 44567899999999999999999999999999999999999988888888888999999999999999999999999999
Q ss_pred CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393 99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 178 (247)
Q Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 178 (247)
++++....+..+...+.+++|+|+++++++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|+
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 99988888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
+||+++++....+ ..+...|.+++|+|++++|++++.|+.|++||.++.+++..+..+..
T Consensus 232 iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~ 291 (321)
T 3ow8_A 232 IYDVQHANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD 291 (321)
T ss_dssp EEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EEECCCcceeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC
Confidence 9999988776654 45567899999999999999999999999999999888877766544
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4e-39 Score=263.00 Aligned_cols=221 Identities=33% Similarity=0.624 Sum_probs=204.5
Q ss_pred eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
...+.+.+|..+|++++|+|++++|++|+.||.|++||..+++....+.+|...|.+++|+|+++++++++.|+.|++||
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 34566789999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393 98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177 (247)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 177 (247)
+.+++.+..+.+|...|.+++|+|++..+++|+.|+.|++||++++.++..+..|...+.++.++|++.++++|+.|+.|
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCceeeeeeccCCCCCeEEEEECCC--------------------CCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPN--------------------GKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
++||+.+++....+. .+...|.+++|+|+ +.+|++|+.||.|++||.+...++..+..+
T Consensus 259 ~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h 337 (410)
T 1vyh_C 259 RVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337 (410)
T ss_dssp EEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence 999999988766653 45678999999996 678999999999999999998888777665
Q ss_pred Cc
Q psy4393 238 LN 239 (247)
Q Consensus 238 ~~ 239 (247)
..
T Consensus 338 ~~ 339 (410)
T 1vyh_C 338 DN 339 (410)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-37 Score=248.17 Aligned_cols=219 Identities=25% Similarity=0.471 Sum_probs=198.6
Q ss_pred CceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393 16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI 95 (247)
Q Consensus 16 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 95 (247)
+.....++.+|.+.|.+++|+|++++|++|+.||.|++||..++.....+..|...|.+++|+|+++++++++.|+.+++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34567788999999999999999999999999999999999999888889899999999999999999999999999999
Q ss_pred EECCCc----eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393 96 WELSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 171 (247)
Q Consensus 96 ~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 171 (247)
|++.+. .....+.+|...+.++.|++++. +++++.|+.|++||+++++.+..+..|.+.|.+++|+|++.++++|
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 999865 34566788999999999998764 8899999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 236 (247)
+.|+.|++||+++++....+. .+...|.+++|+|++++|++++.||.|++||.+...++..+..
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 266 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc
Confidence 999999999999988776653 4567899999999999999999999999999998877666543
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=251.89 Aligned_cols=210 Identities=20% Similarity=0.274 Sum_probs=182.9
Q ss_pred ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeEEE
Q psy4393 17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKI 95 (247)
Q Consensus 17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v 95 (247)
....+.+.+|.+.|++++|+|+|++|++|+.|+.|++||+.+++....+.+|...|.+++|+|++. .+++++.|+.|++
T Consensus 117 ~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~i 196 (344)
T 4gqb_B 117 IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196 (344)
T ss_dssp EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccc
Confidence 334556678999999999999999999999999999999999999999999999999999999874 7899999999999
Q ss_pred EECCCceEEEEEe--cCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC-CEEEEe
Q psy4393 96 WELSSGKCLKTLK--GHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSS 171 (247)
Q Consensus 96 ~d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~ 171 (247)
||+++++....+. .+...+.+++|+|+ +.++++|+.|+.|++||+++++.+..+..|...|++++|+|++ .+|++|
T Consensus 197 wd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 197 WDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp EETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred ccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence 9999988776664 34456889999984 5788999999999999999999999999999999999999998 578999
Q ss_pred cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCCc
Q psy4393 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~ 228 (247)
+.|+.|++||+.+++... ...|...|.+++|+|+++ +|++++.||+|++|+..+.
T Consensus 277 s~D~~i~vwd~~~~~~~~--~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 277 SEDCSLAVLDSSLSELFR--SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ETTSCEEEECTTCCEEEE--ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred eCCCeEEEEECCCCcEEE--EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 999999999999887654 345677899999999987 5678999999999998764
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-37 Score=245.57 Aligned_cols=221 Identities=29% Similarity=0.487 Sum_probs=196.4
Q ss_pred CceEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCC-----CeEEEEEecccCCeEEEEECCCCCEEEEEcC
Q psy4393 16 NYVLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89 (247)
Q Consensus 16 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 89 (247)
.+.+..++.+|.+.|.+++|+|++ ++|++|+.|+.|++|+... +.....+.+|...|.+++|+|+++++++++.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 466777889999999999999965 7999999999999999753 2345678899999999999999999999999
Q ss_pred CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCC-----
Q psy4393 90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD----- 164 (247)
Q Consensus 90 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~----- 164 (247)
|+.|++||+.+++....+.+|...|.+++|+|++.++++++.|+.|++||++ ++.+..+..|...+.++.+.|.
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-----
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999997 4567788899999999999985
Q ss_pred -CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393 165 -GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL 238 (247)
Q Consensus 165 -~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 238 (247)
+..+++++.|+.|++||+.+.+....+. .+...|.+++|+|++++|++++.||.|++||.+..+++..+..+.
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 238 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 4489999999999999999887666543 566789999999999999999999999999999988777765543
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.3e-38 Score=257.56 Aligned_cols=219 Identities=35% Similarity=0.589 Sum_probs=202.4
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS 99 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 99 (247)
..++.+|.+.|.+++|+|++++|++|+.|+.|++||..+++....+.+|...|.+++|+|+++.+++++.|+.|++||+.
T Consensus 143 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~ 222 (410)
T 1vyh_C 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222 (410)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 34677899999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCC---------------
Q psy4393 100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD--------------- 164 (247)
Q Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------- 164 (247)
++.++..+.+|...+.++.++|++.++++++.|+.|++||+++++....+..|...|.+++|+|+
T Consensus 223 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 223 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -----CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 165 -----GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 165 -----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
+.+|++|+.|+.|++||+++++.+..+. .+...|.+++|+|++++|++++.||.|++||.+...++..+..+..
T Consensus 303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~ 381 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381 (410)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS
T ss_pred ccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC
Confidence 6789999999999999999998877664 4566899999999999999999999999999998887777666544
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.1e-38 Score=247.38 Aligned_cols=206 Identities=30% Similarity=0.480 Sum_probs=192.7
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
....+..|...+.+++|+|++++|++++.+|.+++|+..+++....+..+...+.+++|+|++++|++++.|+.|++||+
T Consensus 114 ~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~ 193 (321)
T 3ow8_A 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193 (321)
T ss_dssp EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 34456678889999999999999999999999999999999888888888888999999999999999999999999999
Q ss_pred CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393 99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 178 (247)
Q Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 178 (247)
.+++.+..+.+|...|.+++|+|++.++++++.|+.|++||++.++....+..|...|.+++|+|++.+|++++.|+.|+
T Consensus 194 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp TTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393 179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225 (247)
Q Consensus 179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 225 (247)
+||+.+++.+..+. .+...|..++|+|++++|++++.||.|+|||.
T Consensus 274 iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 274 VWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEeCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999998877764 45678999999999999999999999999995
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.3e-37 Score=245.82 Aligned_cols=222 Identities=26% Similarity=0.485 Sum_probs=194.6
Q ss_pred eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE---------------------------------
Q psy4393 18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--------------------------------- 64 (247)
Q Consensus 18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~--------------------------------- 64 (247)
....++.+|.+.|.+++|+|++++|++|+.||.|++||..+++....
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 45677889999999999999999999999999999999765543322
Q ss_pred ---------------EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcC--CCCEEE
Q psy4393 65 ---------------ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP--QSNLIV 127 (247)
Q Consensus 65 ---------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 127 (247)
+..|...|.++.|+|++..+++++.|+.|++||+++++.+..+.+|...+.++.++| +++.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 234666788899999999999999999999999999999999999999999999987 568999
Q ss_pred EeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-CCCCeEEEEECC
Q psy4393 128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSP 206 (247)
Q Consensus 128 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~s~ 206 (247)
+|+.|+.|++||+++++++..+..|...|.+++|+|++.+|++++.|+.|++||++..+....+... ....+..++|+|
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL 294 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999988766554332 234688999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 207 NGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 207 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
++++|++++.|+.|++||.....++..+..+..
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~ 327 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN 327 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEECCCC
Confidence 999999999999999999988887777666544
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.8e-37 Score=242.50 Aligned_cols=220 Identities=26% Similarity=0.456 Sum_probs=194.7
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
...++..|..+|.+++|+|++++|++|+.|+.|++||..+++....+.+|...|.+++|+|+++++++++.|+.|++||+
T Consensus 47 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~ 126 (304)
T 2ynn_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126 (304)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc-eEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCCCeEEEEECC--CCCEEEEecC
Q psy4393 99 SSG-KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFNR--DGSLIVSSSY 173 (247)
Q Consensus 99 ~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~ 173 (247)
+++ .....+.+|...|.+++|+| ++..+++|+.|+.|++||++.+.....+. .+...+..+.++| ++.+|++++.
T Consensus 127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 877 45567888999999999999 67899999999999999998776555443 4557889999986 6789999999
Q ss_pred CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
|+.|++||+++++.+..+. .+...|..++|+|++++|++++.||.|++||.++.+.+..+..+.+
T Consensus 207 D~~i~iWd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~ 271 (304)
T 2ynn_A 207 DLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271 (304)
T ss_dssp TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS
T ss_pred CCeEEEEeCCCCccceeeC-CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc
Confidence 9999999999998877664 4567899999999999999999999999999998887777665443
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1e-36 Score=240.83 Aligned_cols=170 Identities=28% Similarity=0.552 Sum_probs=157.0
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS 99 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 99 (247)
..++.+|...|.+++|+|++++|++|+.|+.|++||..+++....+.+|...|.+++|+|+++.+++++.|+.|++||++
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~ 137 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137 (319)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CceEEEEEecCCccEEEEEEcCC------CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC
Q psy4393 100 SGKCLKTLKGHSNYVFCCNFNPQ------SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 173 (247)
Q Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 173 (247)
++.+..+.+|...+.++.+.|. +..+++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++.
T Consensus 138 -~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~ 216 (319)
T 3frx_A 138 -GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 216 (319)
T ss_dssp -SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET
T ss_pred -CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 4567788889999999999984 458999999999999999999988889999999999999999999999999
Q ss_pred CCeEEEEeCCCceeeee
Q psy4393 174 DGLCRIWDTASGQCLKT 190 (247)
Q Consensus 174 dg~i~v~d~~~~~~~~~ 190 (247)
||.|++||+.+++.+..
T Consensus 217 dg~i~iwd~~~~~~~~~ 233 (319)
T 3frx_A 217 DGEIMLWNLAAKKAMYT 233 (319)
T ss_dssp TCEEEEEETTTTEEEEE
T ss_pred CCeEEEEECCCCcEEEE
Confidence 99999999988765544
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-36 Score=241.82 Aligned_cols=220 Identities=26% Similarity=0.483 Sum_probs=197.0
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC----eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI 95 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 95 (247)
...+..|...|.+++|+|++++|++|+.|+.+++|+..+. .....+.+|...|.++.|++++. +++++.|+.|++
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~ 168 (340)
T 1got_B 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCAL 168 (340)
T ss_dssp EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEE
Confidence 4456789999999999999999999999999999998754 34566788999999999998765 889999999999
Q ss_pred EECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393 96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 175 (247)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 175 (247)
||+.+++....+.+|...|.+++|+|++.++++|+.|+.|++||++++..+..+..|...|.+++|+|++.+|++|+.||
T Consensus 169 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~ 248 (340)
T 1got_B 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceeeeeeccC-CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393 176 LCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL 240 (247)
Q Consensus 176 ~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 240 (247)
.|++||+++++.+..+... ....+.+++|+|++++|++|+.||.|++||.....++..+..+..+
T Consensus 249 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~ 314 (340)
T 1got_B 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314 (340)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCc
Confidence 9999999988776655432 2347899999999999999999999999999988887777766543
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=246.02 Aligned_cols=211 Identities=28% Similarity=0.527 Sum_probs=184.3
Q ss_pred CceEEEEEecCCC-CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE---EecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393 16 NYVLKFTLAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVAWSSDSRLLVSGSDDK 91 (247)
Q Consensus 16 ~~~~~~~~~~h~~-~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~ 91 (247)
......++.+|.. .|.+++|+|+|++|++|+.|+.|++|+...+..... ..+|...|.+++|+|++++|++++.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3456677889988 999999999999999999999999999987754322 257888999999999999999999999
Q ss_pred eEEEEECCCc--eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe---EEEeecCCCCCeEEEEECCCCC
Q psy4393 92 TLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK---CLKTLPAHSDPVSAVHFNRDGS 166 (247)
Q Consensus 92 ~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~ 166 (247)
.+++||..++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||++.+. .+..+..|...|.+++|+|++.
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 9999998776 4567788999999999999999999999999999999998763 4566788999999999999999
Q ss_pred EEEEecCCCeEEEEeCCCceeee-eeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 167 LIVSSSYDGLCRIWDTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 167 ~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
+|++++.|+.|++||..+++... .....+...|..++|+|++++|++++.||+|+|||..
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 99999999999999998765332 2234567789999999999999999999999999963
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.1e-36 Score=240.33 Aligned_cols=211 Identities=30% Similarity=0.507 Sum_probs=182.7
Q ss_pred CCCceEEEEEecCCCCeEEEEE-----CC-CCCEEEEEeCCCeEEEEecCCC-------eEEEEEecccCCeEEEEECCC
Q psy4393 14 KPNYVLKFTLAGHTKAVSSVKF-----SP-NGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSD 80 (247)
Q Consensus 14 ~~~~~~~~~~~~h~~~v~~~~~-----s~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~ 80 (247)
.++.....++.+|.+.|++++| ++ ++++|++|+.|+.|++|+.... .....+.+|...|.+++|+|+
T Consensus 8 ~~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 8 DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred ceEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence 3455667788999999999999 76 8999999999999999998643 345667889999999999999
Q ss_pred CCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee--cCCCCCeEE
Q psy4393 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSA 158 (247)
Q Consensus 81 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~ 158 (247)
+.++++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++++.|+.|++||+......... ..|...+.+
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 999999999999999999999999999999999999999999999999999999999999854332221 267788999
Q ss_pred EEECCCC----------CEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 159 VHFNRDG----------SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 159 ~~~~~~~----------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
++|+|++ .++++++.|+.|++||.. .+....+ ..+...|.+++|+|+|++|++++.||.|++||.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTF-KAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEE-cCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 9999987 789999999999999954 4434333 4556789999999999999999999999999984
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.4e-37 Score=243.63 Aligned_cols=210 Identities=20% Similarity=0.299 Sum_probs=178.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEE----EEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 101 (247)
|...|.+++|+|++ .|++|+.||.|++||+.+++... ...+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ 159 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 56789999999985 57789999999999998775433 34578999999999999999999999999999999999
Q ss_pred eEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeec--CCCCCeEEEEECCC-CCEEEEecCCCeE
Q psy4393 102 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLP--AHSDPVSAVHFNRD-GSLIVSSSYDGLC 177 (247)
Q Consensus 102 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~dg~i 177 (247)
+.+..+.+|...|.+++|+|++ .++++++.|+.|++||+++++....+. .+...+.+++|+|+ +.+|++|+.||.|
T Consensus 160 ~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v 239 (344)
T 4gqb_B 160 VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239 (344)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE
Confidence 9999999999999999999987 578999999999999999998877664 44557899999985 5688999999999
Q ss_pred EEEeCCCceeeeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKVVTPAIICSTPL 238 (247)
Q Consensus 178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 238 (247)
++||+++++.+..+. .+...|.+++|+|++ ++|++|+.|++|+|||.+.++.+. ...+.
T Consensus 240 ~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H~ 299 (344)
T 4gqb_B 240 SLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAHR 299 (344)
T ss_dssp EEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCCS
T ss_pred EEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCCC
Confidence 999999998877654 456789999999998 579999999999999998876543 34443
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.9e-36 Score=240.25 Aligned_cols=204 Identities=25% Similarity=0.465 Sum_probs=186.0
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC--CCCEEEEEcCCCeEEEEE
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d 97 (247)
...+.+|...|.+++|+|++..|++++.|+.|++||+.+++....+.+|...|.+++|+| +++.+++++.|+.|++||
T Consensus 147 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd 226 (354)
T 2pbi_B 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226 (354)
T ss_dssp CEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEE
T ss_pred ceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 345668999999999999999999999999999999999999999999999999999987 578999999999999999
Q ss_pred CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC--CCCeEEEEECCCCCEEEEecCCC
Q psy4393 98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDG 175 (247)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg 175 (247)
+++++++..+..|...|.+++|+|++..+++++.|+.|++||++.++.+..+..+ ...+.+++|+|++.+|++|+.|+
T Consensus 227 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~ 306 (354)
T 2pbi_B 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY 306 (354)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCC
Confidence 9999999999999999999999999999999999999999999998877666533 34789999999999999999999
Q ss_pred eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224 (247)
Q Consensus 176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 224 (247)
.|++||+.+++.+..+ ..+...|.+++|+|+|++|++|+.||.|+||+
T Consensus 307 ~i~vwd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 307 TINVWDVLKGSRVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cEEEEECCCCceEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999988876655 35667899999999999999999999999996
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.4e-37 Score=245.63 Aligned_cols=208 Identities=16% Similarity=0.261 Sum_probs=183.8
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeEEEEEC
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWEL 98 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~ 98 (247)
.+...+|...|.+++|+|++++|++|+.|+.|++||..+++....+.+|...|.+++|+|++. .+++++.|+.|++||+
T Consensus 132 ~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~ 211 (357)
T 4g56_B 132 KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211 (357)
T ss_dssp CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence 345568999999999999999999999999999999999999999999999999999999875 7889999999999999
Q ss_pred CCceEEEEEe--cCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC-CEEEEecCC
Q psy4393 99 SSGKCLKTLK--GHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYD 174 (247)
Q Consensus 99 ~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d 174 (247)
++++....+. .+...+.+++|+|+ +.++++|+.|+.|++||+++++.+..+..|...|++++|+|++ ++|++|+.|
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence 9887655443 45567899999997 5689999999999999999999999999999999999999987 578999999
Q ss_pred CeEEEEeCCCceeeeeeccCCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCcc
Q psy4393 175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
+.|++||+.+++.+..+ .+...|++++|+| ++++|++++.||+|++||+....
T Consensus 292 ~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 292 CTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 99999999998876544 5667899999998 79999999999999999987643
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.3e-37 Score=249.28 Aligned_cols=221 Identities=25% Similarity=0.483 Sum_probs=193.5
Q ss_pred CceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393 16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI 95 (247)
Q Consensus 16 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 95 (247)
......++.+|.+.|++++|+|++++|++|+.||.|++||..+++....+..|...|.+++|+|+++++++++.|+.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCce-------EEEEEecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEee-----cCCCCCeEEEEEC
Q psy4393 96 WELSSGK-------CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTL-----PAHSDPVSAVHFN 162 (247)
Q Consensus 96 ~d~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~i~~~~~~ 162 (247)
||+.+.. ....+.+|...+.++.|.|+ +..+++|+.|+.|++||+++++.+..+ ..|...+.+++++
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9986532 23456788888999999986 457999999999999999999887766 5688899999998
Q ss_pred C-CCCEEEEecCCCeEEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 163 R-DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 163 ~-~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
+ ++.++++|+.|+.|++||++.. +.... ...+...|.+++|+|++++|++++.||+|++||.+...++.++..+
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRT-YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEE-ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEE-ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 7 7889999999999999999854 44433 4456678999999999999999999999999999998887776554
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8e-36 Score=254.90 Aligned_cols=215 Identities=24% Similarity=0.403 Sum_probs=189.3
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC--eEEEEEecccCCeEEEEECCCCCEEEEEcCC----CeE
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDD----KTL 93 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i 93 (247)
...+.+|...|++++|+|+|++||+|+.||.|++||..++ .....+.+|..+|.+++|+|+++.|++++.+ +.|
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence 3456789999999999999999999999999999998643 3455678899999999999999999988765 367
Q ss_pred EEEECCCceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec
Q psy4393 94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 172 (247)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 172 (247)
++|| .++....+.+|...|.+++|+|++. .+++++.|+.+++||.++++....+..|...|.+++|+|++++|++++
T Consensus 132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 132 FLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp EETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence 7777 4555667889999999999999986 699999999999999999988889999999999999999999999999
Q ss_pred CCCeEEEEeCCCceeeeeecc------CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393 173 YDGLCRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 173 ~dg~i~v~d~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 236 (247)
.|+.|++||+.+++....+.. .+...|.+++|+|++++|++++.|++|++||.++.+.+..+..
T Consensus 210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence 999999999999887766533 5677899999999999999999999999999998877666543
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-35 Score=237.90 Aligned_cols=210 Identities=33% Similarity=0.578 Sum_probs=184.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
..|.+++|+|+|++|++|+.|+.|++||..+++....+.+|...|.+++|+|+++.|++++.|+.|++||+++++....+
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 35999999999999999999999999999999988899999999999999999999999999999999999999887766
Q ss_pred ecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEee-------cCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393 108 KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTL-------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 179 (247)
Q Consensus 108 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 179 (247)
. +...+.+++++| ++.++++++.|+.|++||++++..+..+ ..|...|.+++|+|++.+|++|+.|+.|++
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 6 455688999999 8999999999999999999998877665 568889999999999999999999999999
Q ss_pred EeCCCcee------------eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 180 WDTASGQC------------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 180 ~d~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
||+++... ... ...+...|.+++|+|++++|++++.||.|++||.+++.++..+..+..
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVT-YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp EEC---------------CEEEE-EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EECCCCCCcccccCCCCCcceEE-EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence 99976432 222 234556789999999999999999999999999999998888776654
No 22
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-34 Score=228.21 Aligned_cols=221 Identities=36% Similarity=0.622 Sum_probs=194.6
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
....+.+|...|.+++|+|++++|++++.|+.|++||..+++....+.+|...|.++.|+|+++++++++.|+.|++||+
T Consensus 57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393 99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLC 177 (247)
Q Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i 177 (247)
++++.+..+..|...+.++.|+|+++++++++.|+.|++||+++++.+..+. .+..++..++|+|++++|++++.|+.|
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
T 4ery_A 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216 (312)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred CCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 9999988999999999999999999999999999999999999988777654 455689999999999999999999999
Q ss_pred EEEeCCCceeeeeeccCCCC--CeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 178 RIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 178 ~v~d~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
++||+++++.+..+..+... .+......+++++|++|+.||.|++||.+..+.+..+..+.+
T Consensus 217 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~ 280 (312)
T 4ery_A 217 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 280 (312)
T ss_dssp EEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC
Confidence 99999999877766443321 222333457889999999999999999999888877776654
No 23
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.3e-36 Score=233.65 Aligned_cols=207 Identities=23% Similarity=0.360 Sum_probs=178.5
Q ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--CeEEEEEecccCCeEEEEECCC--CCEEEEEcCCCeEEEE
Q psy4393 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTLKIW 96 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~ 96 (247)
..+.+|.+.|.+++|+|+|++|++|+.|+.|++|+... .+....+.+|..+|.+++|+|+ +++|++++.|+.|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 34678999999999999999999999999999999864 3566788899999999999874 8999999999999999
Q ss_pred ECCCce--EEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCeE--EEeecCCCCCeEEEEECCC------
Q psy4393 97 ELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKC--LKTLPAHSDPVSAVHFNRD------ 164 (247)
Q Consensus 97 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~------ 164 (247)
|+++++ .+..+..|...|.+++|+|+ +.++++++.|+.|++||++.+.. ...+..|...+.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998764 45567788899999999997 88999999999999999987632 3456788999999999997
Q ss_pred -------CCEEEEecCCCeEEEEeCCCce----eeeeeccCCCCCeEEEEECCCC---CEEEEEEcCCeEEEEECCCc
Q psy4393 165 -------GSLIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNG---KYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 165 -------~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~ 228 (247)
+++|++|+.|+.|++||+++++ .... +..+...|.+++|+|++ ++|++++.|++|+|||.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~-l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEE-ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE-ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 4689999999999999997754 2223 34567789999999995 89999999999999998764
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-35 Score=232.83 Aligned_cols=204 Identities=30% Similarity=0.501 Sum_probs=172.6
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-------CeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-------GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
+|...|.+++|+|++++|++|+.|+.|++|+... ......+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3999999999999999999999999999999843 345567788999999999999999999999999999999
Q ss_pred CCC----ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC--eEEEeecCCCCCeEEEEECCC--CCEEE
Q psy4393 98 LSS----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG--KCLKTLPAHSDPVSAVHFNRD--GSLIV 169 (247)
Q Consensus 98 ~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~ 169 (247)
+.. .+.+..+.+|...|.++.|+|++.+|++++.|+.|++||.+.+ +++..+..|...|.+++|+|+ +..|+
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 943 2456778899999999999999999999999999999999876 567888999999999999998 67899
Q ss_pred EecCCCeEEEEeCCCc--------eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 170 SSSYDGLCRIWDTASG--------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 170 ~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
+++.|+.|++||+..+ .....+...+...|..++|++++ +|++++.||.|+|||...+.
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence 9999999999998754 22333333366789999999765 89999999999999987653
No 25
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-35 Score=232.79 Aligned_cols=226 Identities=22% Similarity=0.375 Sum_probs=197.7
Q ss_pred CCCCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC
Q psy4393 11 SNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD 90 (247)
Q Consensus 11 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 90 (247)
............+.+|.+.|++++|+|++++|++++.||.|++||..+++....+.+|...|.+++|+|++++|++++.|
T Consensus 16 ~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 95 (369)
T 3zwl_B 16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD 95 (369)
T ss_dssp CCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence 34444567778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC-----CCEEEEECCCCe-----------EEEeecCCCC
Q psy4393 91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGK-----------CLKTLPAHSD 154 (247)
Q Consensus 91 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~-----------~~~~~~~~~~ 154 (247)
+.|++||+.+++....+. +...+.++.|+|++..+++++.+ +.+++||++.+. .+..+..+..
T Consensus 96 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp TEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred CeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 999999999998888777 77889999999999999999998 999999997653 2333445555
Q ss_pred --CeEEEEECCCCCEEEEecCCCeEEEEeCCC-ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393 155 --PVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA 231 (247)
Q Consensus 155 --~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 231 (247)
.+.+++|+|+++++++++.||.|.+||+++ .+....+ ..+...+.+++|+|++++|++++.||.|++||.++..++
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE-ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 899999999999999999999999999998 5554444 445678999999999999999999999999999998877
Q ss_pred EEEccCC
Q psy4393 232 IICSTPL 238 (247)
Q Consensus 232 ~~~~~~~ 238 (247)
..+..+.
T Consensus 254 ~~~~~~~ 260 (369)
T 3zwl_B 254 KKYETDC 260 (369)
T ss_dssp EEEECSS
T ss_pred eeecCCC
Confidence 7665433
No 26
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-35 Score=231.65 Aligned_cols=208 Identities=27% Similarity=0.424 Sum_probs=174.5
Q ss_pred eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC--eEEEEE-ec-ccCCeEEEEECCCCCEEEEEcCCCeE
Q psy4393 18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTI-SG-HKLGISDVAWSSDSRLLVSGSDDKTL 93 (247)
Q Consensus 18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i 93 (247)
....++.+|.++|.+++|+|+ +|++|+.|+.|++|+...+ .....+ .+ |...|.+++|+|++++|++++.|+.|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 345678899999999999987 8999999999999999764 334445 34 88899999999999999999999999
Q ss_pred EEEECCC-------ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC----CeEEEeecCCCCCeEEEEEC
Q psy4393 94 KIWELSS-------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT----GKCLKTLPAHSDPVSAVHFN 162 (247)
Q Consensus 94 ~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~ 162 (247)
++||+.. .+....+.+|...|.+++|+|++++|++++.|+.|++||++. .+.+..+..|...|.+++|+
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 9999853 345667888999999999999999999999999999999943 24567788999999999999
Q ss_pred CCCCEEEEecCCCeEEEEeCCCc--eeeeeeccCCCCCeEEEEECCC--CCEEEEEEcCCeEEEEECCCc
Q psy4393 163 RDGSLIVSSSYDGLCRIWDTASG--QCLKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 163 ~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~ 228 (247)
|++.+|++++.|+.|++||..++ +.+.. ...+...|.+++|+|+ +.+|++++.|++|++||.+..
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAV-LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEE-ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEE-ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 99999999999999999998765 33443 3456678999999999 778999999999999998654
No 27
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.7e-35 Score=234.59 Aligned_cols=212 Identities=24% Similarity=0.375 Sum_probs=182.0
Q ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC----eEEEEEecccCCeEEEEECC--CCCEEEEEcCCCeEE
Q psy4393 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLK 94 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~ 94 (247)
..+.+|.+.|++++|+|++++|++|+.||.|++|+..++ .....+.+|...|.+++|+| ++++|++++.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 345689999999999999999999999999999999765 45566788999999999999 699999999999999
Q ss_pred EEECCCc---------eEEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCeE------------------
Q psy4393 95 IWELSSG---------KCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKC------------------ 145 (247)
Q Consensus 95 v~d~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~------------------ 145 (247)
+||+.++ +....+..|...+.+++|+|+ +.++++++.|+.|++||+++++.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 556778889999999999999 99999999999999999875431
Q ss_pred ------------------------------------------EEeecCCCCCeEEEEECCCC----CEEEEecCCCeEEE
Q psy4393 146 ------------------------------------------LKTLPAHSDPVSAVHFNRDG----SLIVSSSYDGLCRI 179 (247)
Q Consensus 146 ------------------------------------------~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~v 179 (247)
+..+..|...|.+++|+|++ .+|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 33455788899999999998 89999999999999
Q ss_pred EeCCCc----------------------------------------------eeeeeeccCCCCCeEEEEECCCCCEEEE
Q psy4393 180 WDTASG----------------------------------------------QCLKTLIDDDNPPVSFVKFSPNGKYILA 213 (247)
Q Consensus 180 ~d~~~~----------------------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 213 (247)
||++.+ +.+.. ...+...|.+++|+|++++|++
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE-HDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEE-ECTTSSCEEEEEECSSSCCEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE-EecccccEEEEEEcCCCCEEEE
Confidence 998764 22222 2345678999999999999999
Q ss_pred EEcCCeEEEEECCCcceEEE
Q psy4393 214 ATLDNTLKLWDSKVVTPAII 233 (247)
Q Consensus 214 ~~~dg~i~vwd~~~~~~~~~ 233 (247)
++.||.|++||....+.+..
T Consensus 324 ~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EETTSCEEEEEECTTSCEEE
T ss_pred ecCCCcEEEEecCcCcchhh
Confidence 99999999999987754433
No 28
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-34 Score=235.38 Aligned_cols=202 Identities=34% Similarity=0.655 Sum_probs=177.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEeccc------------------CCeEEEEECCCCCEEEE
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK------------------LGISDVAWSSDSRLLVS 86 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~ 86 (247)
+|.+.|.+++|+|+|++|++++ ++.+++|+..+++....+..+. ..|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999876 7899999999888776665432 23899999999999999
Q ss_pred EcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECC-CC
Q psy4393 87 GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DG 165 (247)
Q Consensus 87 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~ 165 (247)
++.|+.|++||+.+++....+.+|...|.+++|+|++..+++++.|+.|++||+++++....+. +...+.+++++| ++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 9999999999999999989999999999999999999999999999999999999998877765 456799999999 89
Q ss_pred CEEEEecCCCeEEEEeCCCceeeeeec------cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393 166 SLIVSSSYDGLCRIWDTASGQCLKTLI------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
.++++|+.|+.|++||+++++....+. ..+...|.+++|+|++++|++++.||.|++||.+..
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999999999887665542 345678999999999999999999999999998764
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=232.12 Aligned_cols=204 Identities=27% Similarity=0.511 Sum_probs=178.4
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393 24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 101 (247)
.+|...|.+++|+|++++|++|+.|+.+++|+...+. ....+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~ 137 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence 5799999999999999999999999999999987653 45678889999999999999999999999999999999865
Q ss_pred e---EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe--EEEeecCCCCCeEEEEECCCCCEEEEecCCCe
Q psy4393 102 K---CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 176 (247)
Q Consensus 102 ~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 176 (247)
. .+..+..|...|.+++|+|++.++++++.|+.|++||++.++ ....+..|...|.+++|+|++++|++++.|+.
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence 3 456677889999999999999999999999999999998875 34678899999999999999999999999999
Q ss_pred EEEEeCCCc---------------eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393 177 CRIWDTASG---------------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV 227 (247)
Q Consensus 177 i~v~d~~~~---------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 227 (247)
|++||.... +++..+...+...|..++|+|++..|++++.|+.|++|+.+.
T Consensus 218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 999996322 122233334667899999999999999999999999999764
No 30
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.5e-35 Score=227.92 Aligned_cols=208 Identities=27% Similarity=0.397 Sum_probs=176.9
Q ss_pred EEEEecCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCC--CCEEEEEcCCCeE
Q psy4393 20 KFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTL 93 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i 93 (247)
..++.+|.++|.+++|+|+ +++|++|+.|+.|++||..++. ....+..|...|.+++|+|+ +.+|++++.|+.|
T Consensus 46 ~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v 125 (297)
T 2pm7_B 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV 125 (297)
T ss_dssp CEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred EEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcE
Confidence 4567899999999999874 8999999999999999998764 44566778889999999997 8899999999999
Q ss_pred EEEECCCce--EEEEEecCCccEEEEEEcCC-------------CCEEEEeeCCCCEEEEECCCCe----EEEeecCCCC
Q psy4393 94 KIWELSSGK--CLKTLKGHSNYVFCCNFNPQ-------------SNLIVSGSFDESVRIWDVRTGK----CLKTLPAHSD 154 (247)
Q Consensus 94 ~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~ 154 (247)
++||++++. ....+.+|...+.+++|+|+ +.+|++|+.|+.|++||+++++ ....+..|..
T Consensus 126 ~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~ 205 (297)
T 2pm7_B 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (297)
T ss_dssp EEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred EEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence 999998753 23456788899999999996 5799999999999999998765 5567889999
Q ss_pred CeEEEEECCCC---CEEEEecCCCeEEEEeCCCce--eeeeec--cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393 155 PVSAVHFNRDG---SLIVSSSYDGLCRIWDTASGQ--CLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV 227 (247)
Q Consensus 155 ~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~~--~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 227 (247)
.|.+++|+|++ .+|++++.|+.|++||+.+.+ ...... ..+...+..++|+|++++|++++.||.|+||+.+.
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 99999999985 799999999999999987643 112222 33456799999999999999999999999999763
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-35 Score=239.83 Aligned_cols=210 Identities=26% Similarity=0.492 Sum_probs=184.2
Q ss_pred EEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCeEEEEE-----ecccCCeEEEEECC-CCCEEEEEcCCCeE
Q psy4393 21 FTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTI-----SGHKLGISDVAWSS-DSRLLVSGSDDKTL 93 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 93 (247)
..+.+|.+.|.++.|+|++ ..|++|+.|+.|++||+.+++....+ .+|...|.++.|++ +++.+++++.|+.|
T Consensus 151 ~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v 230 (380)
T 3iz6_a 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230 (380)
T ss_dssp CBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCE
T ss_pred eeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeE
Confidence 3467899999999999974 57999999999999999998887776 56788899999987 78999999999999
Q ss_pred EEEECC-CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-------CCeEEEEECCCC
Q psy4393 94 KIWELS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-------DPVSAVHFNRDG 165 (247)
Q Consensus 94 ~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~ 165 (247)
++||++ .+..+..+.+|...|.+++|+|++.++++++.|+.|++||+++++.+..+..+. ..+.+++|+|++
T Consensus 231 ~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 310 (380)
T 3iz6_a 231 RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG 310 (380)
T ss_dssp EEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred EEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC
Confidence 999997 456777888999999999999999999999999999999999998887765432 247899999999
Q ss_pred CEEEEecCCCeEEEEeCCCceeeeeec---cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393 166 SLIVSSSYDGLCRIWDTASGQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
++|++|+.||.|++||+..++....+. ..+...|.+++|+|+|++|++|+.||+|+||+......
T Consensus 311 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 999999999999999998887665542 45677899999999999999999999999999876543
No 32
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.5e-34 Score=248.09 Aligned_cols=220 Identities=29% Similarity=0.449 Sum_probs=191.9
Q ss_pred ceEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCC-----CeEEEEEecccCCeEEEEECCCCCEEEEEcCC
Q psy4393 17 YVLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGISDVAWSSDSRLLVSGSDD 90 (247)
Q Consensus 17 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 90 (247)
..+...+.+|.+.|++++|+|++ ++|++|+.|+.|++|+... +.....+.+|...|.+++|+|++++|++++.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 34556788999999999999875 6899999999999999864 23456788999999999999999999999999
Q ss_pred CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee---cCCCCCeEEEEECCCC--
Q psy4393 91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL---PAHSDPVSAVHFNRDG-- 165 (247)
Q Consensus 91 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~-- 165 (247)
+.|++||+.++.....+.+|...|.+++|+|++..+++++.|+.|++||+......... ..|...|.+++|+|++
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 99999999999999999999999999999999999999999999999998765443322 4677889999999987
Q ss_pred CEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
..+++++.|+.|++||+++++....+ ..+...|.+++|+|++++|++++.||.|++||.+...++..+..+
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~ 602 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC
Confidence 58999999999999999988776654 456678999999999999999999999999999988776554443
No 33
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-34 Score=233.36 Aligned_cols=200 Identities=16% Similarity=0.226 Sum_probs=170.5
Q ss_pred CCCeEEEEECCCCCEEEEE--eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393 27 TKAVSSVKFSPNGEWLASS--SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL 104 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~--~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 104 (247)
...+.+++|+|||++++++ +.|+.|++||..+++....+. |...|.+++|+|+|+++++++.++ +.+|+..+++..
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~ 210 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCI 210 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEE
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcce
Confidence 3458899999999998654 478999999999998887775 667899999999999999998655 556776666654
Q ss_pred E--EEecCCccEEEEEEcCCCCEEEEeeCCC----CEEEEECCCCeE----EEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393 105 K--TLKGHSNYVFCCNFNPQSNLIVSGSFDE----SVRIWDVRTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYD 174 (247)
Q Consensus 105 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 174 (247)
. ....|...+.+++|+|++..+++++.++ .+++||+..... ...+..|..+|++++|+|+|++||+|+.|
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 3 3345778899999999999999998877 588899877653 34567888999999999999999999999
Q ss_pred CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393 175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
+.|++||+.+++.+..+...|..+|++++|+|||++|++++.|++|+|||+...
T Consensus 291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999888877778889999999999999999999999999998543
No 34
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.4e-34 Score=226.55 Aligned_cols=207 Identities=22% Similarity=0.414 Sum_probs=177.2
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
....+.+|...|.+++|+|++.++++|+.|+.|++||..+++....+.+|...|.+++|+|+++.|++++.|+.|++||+
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 34567899999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred CCceEEEEEe---cCCccEEEEEEcCCC----------CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC
Q psy4393 99 SSGKCLKTLK---GHSNYVFCCNFNPQS----------NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165 (247)
Q Consensus 99 ~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 165 (247)
.... ..... .|...+.++.|+|++ .++++++.|+.|++||. ..+....+..|...|.+++|+|++
T Consensus 148 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 148 LGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNG 225 (343)
T ss_dssp SSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTS
T ss_pred cCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCC
Confidence 7433 33332 577889999999986 78999999999999994 566777888999999999999999
Q ss_pred CEEEEecCCCeEEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393 166 SLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 166 ~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
++|++|+.||.|++||+... .....+. ....|..++|+|++++++++ .|+.|++||..+...
T Consensus 226 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 226 KYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSK 288 (343)
T ss_dssp SEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCS
T ss_pred CEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCC
Confidence 99999999999999999543 3333221 23469999999999887654 588999999877654
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.8e-34 Score=243.28 Aligned_cols=201 Identities=42% Similarity=0.717 Sum_probs=182.7
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
...++.+|...|.+++|+|+|++|++++.|+.|++|+. +++....+.+|...|.+++|+|+++++++++.|+.|++||.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 34566789999999999999999999999999999995 56777888899999999999999999999999999999996
Q ss_pred CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393 99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 178 (247)
Q Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 178 (247)
+++.+..+.+|...+.+++|+|+++++++++.|+.|++||. +++.+..+..|...|++++|+|++++|++++.||.|+
T Consensus 456 -~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~ 533 (577)
T 2ymu_A 456 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533 (577)
T ss_dssp -TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred -CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEE
Confidence 46777888999999999999999999999999999999995 6778889999999999999999999999999999999
Q ss_pred EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393 179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224 (247)
Q Consensus 179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 224 (247)
+||. +++.+..+. .+...|..++|+|||++|++++.|+.|++||
T Consensus 534 lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 534 LWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECT-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9996 456665543 5667899999999999999999999999997
No 36
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-34 Score=246.64 Aligned_cols=212 Identities=23% Similarity=0.381 Sum_probs=186.1
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCC----CeEEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSAD----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTL 93 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i 93 (247)
...++.+|.++|.+++|+|+|++|++++.+ +.|++||. +.....+.+|...|.+++|+|++. .+++++.|+.|
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v 172 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 172 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeE
Confidence 455678899999999999999999988765 47888874 445556788999999999999986 69999999999
Q ss_pred EEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-------CCCCCeEEEEECCCCC
Q psy4393 94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-------AHSDPVSAVHFNRDGS 166 (247)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~ 166 (247)
++||..+++....+.+|...|.+++|+|+++++++++.|+.|++||+.+++.+..+. .|.+.|.+++|+|+++
T Consensus 173 ~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 252 (611)
T 1nr0_A 173 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252 (611)
T ss_dssp EEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred EEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence 999999998888999999999999999999999999999999999999998887774 6899999999999999
Q ss_pred EEEEecCCCeEEEEeCCCceeeeee------------------------------------------ccCCCCCeEEEEE
Q psy4393 167 LIVSSSYDGLCRIWDTASGQCLKTL------------------------------------------IDDDNPPVSFVKF 204 (247)
Q Consensus 167 ~l~~~~~dg~i~v~d~~~~~~~~~~------------------------------------------~~~~~~~v~~~~~ 204 (247)
+|++++.|+.|++||+.+++....+ ...+...|.+++|
T Consensus 253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~ 332 (611)
T 1nr0_A 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS 332 (611)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE
Confidence 9999999999999999987654432 1245667999999
Q ss_pred CCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393 205 SPNGKYILAATLDNTLKLWDSKVVTPAI 232 (247)
Q Consensus 205 s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 232 (247)
+|+|++|++++.|++|++||..+.....
T Consensus 333 spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 333 SADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred eCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 9999999999999999999998765543
No 37
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.8e-33 Score=222.02 Aligned_cols=224 Identities=28% Similarity=0.444 Sum_probs=194.1
Q ss_pred CCceEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCe-----EEEEEecccCCeEEEEECCCCCEEEEEc
Q psy4393 15 PNYVLKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSRLLVSGS 88 (247)
Q Consensus 15 ~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 88 (247)
.+..++.+|.+|.+.|++++|+|+ +++|++|+.|+.|++||+...+ ....+.+|...|.+++|+|+++++++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 345667789999999999999997 6899999999999999986532 4556788999999999999999999999
Q ss_pred CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE-EeecCCCCCeEEEEECCCC--
Q psy4393 89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL-KTLPAHSDPVSAVHFNRDG-- 165 (247)
Q Consensus 89 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~~~-- 165 (247)
.|+.|++|+............+...+....+++++..+++++.|+.+++||+...... .....|...+..++|++++
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence 9999999999998888888888888889999999999999999999999999876543 3456788899999998865
Q ss_pred CEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
.++++++.|+.|++||+++++....+. .+..+|.+++|+|++++|++++.||.|++||.+...++..+..+..
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 258 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce
Confidence 578899999999999999988776654 4567899999999999999999999999999999888777665443
No 38
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.4e-35 Score=231.80 Aligned_cols=210 Identities=27% Similarity=0.386 Sum_probs=175.8
Q ss_pred EEEEEecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCC--CCEEEEEcCCCe
Q psy4393 19 LKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDKT 92 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~ 92 (247)
...++.+|.+.|.+++|+| ++++|++|+.|+.|++||..++. ....+.+|...|.+++|+|+ +.+|++++.|+.
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 3456789999999999986 48999999999999999998763 45567789999999999997 789999999999
Q ss_pred EEEEECCCceE---EEEEecCCccEEEEEEcCC-----------------CCEEEEeeCCCCEEEEECCCC---eEEEee
Q psy4393 93 LKIWELSSGKC---LKTLKGHSNYVFCCNFNPQ-----------------SNLIVSGSFDESVRIWDVRTG---KCLKTL 149 (247)
Q Consensus 93 i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~d~~i~v~d~~~~---~~~~~~ 149 (247)
|++||++++.. ...+.+|...+.++.|+|+ +.++++|+.|+.|++||++.+ +.+..+
T Consensus 129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l 208 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL 208 (316)
T ss_dssp EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence 99999987532 2344567788889999987 468999999999999999755 456778
Q ss_pred cCCCCCeEEEEECCCC----CEEEEecCCCeEEEEeCCCc---eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEE
Q psy4393 150 PAHSDPVSAVHFNRDG----SLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 222 (247)
Q Consensus 150 ~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 222 (247)
..|...|.+++|+|++ .+|++++.|+.|++||+.+. +........+...|..++|+|++++|++++.||.|++
T Consensus 209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~l 288 (316)
T 3bg1_A 209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL 288 (316)
T ss_dssp BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 8999999999999986 78999999999999998762 1111222334678999999999999999999999999
Q ss_pred EECCCc
Q psy4393 223 WDSKVV 228 (247)
Q Consensus 223 wd~~~~ 228 (247)
|+....
T Consensus 289 w~~~~~ 294 (316)
T 3bg1_A 289 WKESVD 294 (316)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 997643
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.3e-35 Score=233.67 Aligned_cols=210 Identities=18% Similarity=0.243 Sum_probs=175.3
Q ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEE----EEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
..+|...|.+++|+|++.++ +++.||.|++||+.+++.. ....+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 90 ~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34688999999999998755 5678999999999776543 234478889999999999999999999999999999
Q ss_pred CCceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEee--cCCCCCeEEEEECCCC-CEEEEecCC
Q psy4393 99 SSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDG-SLIVSSSYD 174 (247)
Q Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~-~~l~~~~~d 174 (247)
++++.+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++....+ ..+...+.+++|+|++ .+|++|+.|
T Consensus 169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d 248 (357)
T 4g56_B 169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248 (357)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence 99999999999999999999999874 7899999999999999988776554 3566789999999974 688999999
Q ss_pred CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393 175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~ 234 (247)
+.|++||+++++....+. .+...|.+++|+|++ ++|++++.||+|+|||.++.+.+...
T Consensus 249 ~~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 249 GNVSLVNIKNPDSAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp SCEEEEESSCGGGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred cceeEEECCCCcEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence 999999999988776654 455689999999987 57899999999999999988776554
No 40
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.4e-35 Score=232.70 Aligned_cols=206 Identities=21% Similarity=0.331 Sum_probs=171.8
Q ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECC--CCCEEEEEcCCCeEEEE
Q psy4393 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIW 96 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~ 96 (247)
..+.+|.+.|.+++|+|+|++|++|+.|+.|++||..++. ....+.+|...|.+++|+| ++++|++++.|+.|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3456899999999999999999999999999999998764 3567889999999999986 48899999999999999
Q ss_pred ECCCce--EEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCeE---EEeecCCCCCeEEEEECCC-----
Q psy4393 97 ELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKC---LKTLPAHSDPVSAVHFNRD----- 164 (247)
Q Consensus 97 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~----- 164 (247)
|++++. ....+.+|...|.+++|+|+ +.++++++.|+.|++||++.+.. ...+..|...+.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 998863 55667789999999999997 78999999999999999987632 3445678888999999997
Q ss_pred ------------CCEEEEecCCCeEEEEeCCCc---eeeeeeccCCCCCeEEEEECCCC----CEEEEEEcCCeEEEEEC
Q psy4393 165 ------------GSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNG----KYILAATLDNTLKLWDS 225 (247)
Q Consensus 165 ------------~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~vwd~ 225 (247)
+.+|++|+.|+.|++||++.. +.... +..+...|.+++|+|++ ++|++++.||+|++||.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK-LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC-CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee-cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 468999999999999999754 23333 34566789999999987 89999999999999998
Q ss_pred CC
Q psy4393 226 KV 227 (247)
Q Consensus 226 ~~ 227 (247)
+.
T Consensus 246 ~~ 247 (316)
T 3bg1_A 246 DD 247 (316)
T ss_dssp SS
T ss_pred cC
Confidence 76
No 41
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.3e-34 Score=230.32 Aligned_cols=216 Identities=17% Similarity=0.292 Sum_probs=187.3
Q ss_pred CceEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCeEEEEEe--cccCCeEEEEECC-CCCEEEEEcCCC
Q psy4393 16 NYVLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSS-DSRLLVSGSDDK 91 (247)
Q Consensus 16 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~ 91 (247)
.+....++.+|...|.+++|+|++ ++|++|+.||.|++|+..++.....+. +|...|.+++|+| +++.+++++.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 345566788999999999999999 899999999999999998877766665 5889999999999 779999999999
Q ss_pred eEEEEECCCceEEEEEecC---CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC-E
Q psy4393 92 TLKIWELSSGKCLKTLKGH---SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-L 167 (247)
Q Consensus 92 ~i~v~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 167 (247)
.|++||+.+ .....+..+ ...+.+++|+|++.++++++.|+.|++||+ .++.+..+..|...|.+++|+|++. +
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 999999986 444555443 377999999999999999999999999999 4677888889999999999999999 9
Q ss_pred EEEecCCCeEEEEeCCC----ceeeeeeccCCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393 168 IVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 168 l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 235 (247)
+++++.|+.|++||+++ +.....+ .+...+.+++|+| ++++|++++.||.|++||.++......+.
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 99999999999999987 4444444 4567899999999 99999999999999999998876544433
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-36 Score=242.73 Aligned_cols=204 Identities=15% Similarity=0.182 Sum_probs=172.5
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC--eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK 102 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 102 (247)
.|.++|.+++|+|++++|++++.|+.|++|+..++ +....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 36789999999999999999999999999999887 5666778899999999999999999999999999999998876
Q ss_pred ---EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE---EEeecC-CCCCeEEEEECCCCCEEEEecCCC
Q psy4393 103 ---CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---LKTLPA-HSDPVSAVHFNRDGSLIVSSSYDG 175 (247)
Q Consensus 103 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg 175 (247)
....+..|...+.+++|+|+++++++++.|+.|++||++.++. ...+.. |...|.+++|+|++.+|++++.|+
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence 5666778899999999999999999999999999999998763 566766 899999999999999999999999
Q ss_pred eEEEEeCCC------------------ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393 176 LCRIWDTAS------------------GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 176 ~i~v~d~~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
.|++||+.. ++....+ .+...|.+++|+|++++|++++.||.|++||.+....
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 999999852 3334443 6677899999999999999999999999999988765
No 43
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6e-35 Score=239.99 Aligned_cols=217 Identities=16% Similarity=0.220 Sum_probs=179.2
Q ss_pred ceEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEE--EEEecccCCeEEEEECC-CCCEEEEEcCCCe
Q psy4393 17 YVLKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSS-DSRLLVSGSDDKT 92 (247)
Q Consensus 17 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 92 (247)
+.+......|...|++++|+| ++++||+|+.||.|++||...+... ..+.+|...|++++|+| ++++|++++.|+.
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 334455668999999999999 5678999999999999998766543 34457899999999998 6889999999999
Q ss_pred EEEEECCCceEEEEEec--CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC-EEE
Q psy4393 93 LKIWELSSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIV 169 (247)
Q Consensus 93 i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 169 (247)
|++||++++........ +...+.+++|+|++.++++|+.||.|++||++. +.+..+..|...|.+++|+|++. +++
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEE
Confidence 99999987654332222 233467889999999999999999999999974 55677889999999999999876 788
Q ss_pred EecCCCeEEEEeCCCceeeeeec--cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393 170 SSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 170 ~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 234 (247)
+++.|+.|++||+++.+....+. ..+...|.+++|+|+|++|++++.||.|+|||.+.......+
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence 99999999999998876544332 346678999999999999999999999999999887655444
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.9e-33 Score=218.32 Aligned_cols=214 Identities=17% Similarity=0.344 Sum_probs=190.2
Q ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
....+|...|.+++|+|++++|++++.||.|++|+..+++ ....+..|...+.+++|+|+++.+++++.++.|++||+
T Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~ 170 (337)
T 1gxr_A 91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170 (337)
T ss_dssp EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 3334789999999999999999999999999999998776 55667778888999999999999999999999999999
Q ss_pred CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393 99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 178 (247)
Q Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 178 (247)
++++....+..|...+.+++|+|+++.+++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.++.++
T Consensus 171 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~ 249 (337)
T 1gxr_A 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVE 249 (337)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 9999888999899999999999999999999999999999999998877764 567899999999999999999999999
Q ss_pred EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
+||+.+++... ...+...+..++|+|++++|++++.||.|++||.+..+++......
T Consensus 250 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 306 (337)
T 1gxr_A 250 VLHVNKPDKYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES 306 (337)
T ss_dssp EEETTSSCEEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred EEECCCCCeEE--EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCC
Confidence 99999876543 3455678999999999999999999999999999988776554433
No 45
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-34 Score=230.10 Aligned_cols=210 Identities=23% Similarity=0.364 Sum_probs=183.5
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC--CCeEEEEEecccCCeEEEEECCC--CCEEEEEcCCCeEEE
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTLKI 95 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v 95 (247)
...+.+|.+.|.+++|+|++++|++|+.||.|++|+.. +......+.+|...|.+++|+++ +++|++++.|+.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 34567999999999999999999999999999999997 45566678889999999999987 899999999999999
Q ss_pred EECCCce--EEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCe--EEEeecCCCCCeEEEEECC------
Q psy4393 96 WELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFNR------ 163 (247)
Q Consensus 96 ~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~------ 163 (247)
||+.+++ ....+..|...+.+++|+|+ +.++++++.|+.|++||++.+. ....+..|...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999886 66777788899999999999 9999999999999999998873 3445668889999999999
Q ss_pred -------CCCEEEEecCCCeEEEEeCCCceee---eeeccCCCCCeEEEEECCC---CCEEEEEEcCCeEEEEECCCcc
Q psy4393 164 -------DGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPN---GKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 164 -------~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
++.++++++.||.|++||+++++.. ......+...|.+++|+|+ +++|++++.||.|++||.+...
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6999999999999999999865422 2223456678999999999 8999999999999999998753
No 46
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-33 Score=226.06 Aligned_cols=215 Identities=18% Similarity=0.229 Sum_probs=187.1
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393 24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 101 (247)
..|.++|.+++|+|++++|++++.|+.|++|+..+++ ....+.+|...|.+++|+|+++++++++.|+.|++||+.++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 3589999999999999999999999999999998887 77788889999999999999999999999999999999887
Q ss_pred eEEEE--EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE---EE-eecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393 102 KCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---LK-TLPAHSDPVSAVHFNRDGSLIVSSSYDG 175 (247)
Q Consensus 102 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg 175 (247)
+.... +..+...+.+++|+|+++++++++.|+.+++||++.+.. .. ....|...+.+++|+|++.++++++.||
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 65443 356788899999999999999999999999999988762 22 3356788999999999999999999999
Q ss_pred eEEEEeCC------------------CceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 176 LCRIWDTA------------------SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 176 ~i~v~d~~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
.+++||++ .++....+ ..+...+.+++|+|++++|++++.||.|++||.+..+++..+..+
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 243 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred CEEEEEcccccccccccccccccccchhhheEec-CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence 99999964 44544443 355678999999999999999999999999999998888777765
Q ss_pred Cc
Q psy4393 238 LN 239 (247)
Q Consensus 238 ~~ 239 (247)
..
T Consensus 244 ~~ 245 (372)
T 1k8k_C 244 TL 245 (372)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 47
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.5e-34 Score=250.33 Aligned_cols=222 Identities=21% Similarity=0.407 Sum_probs=203.6
Q ss_pred eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
....++.+|.+.|.+++|+|++++|++++.+|.|++||..++.....+.+|..+|.+++|+|++++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC-eEEEeecCCCCCeEEEEECC-CCCEEEEecCCC
Q psy4393 98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 175 (247)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 175 (247)
+.+++....+..|...|.+++|+|++..+++++.||.|++||++++ .....+..|..++.+++|+| ++..+++++.||
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999987 66777888999999999999 888999999999
Q ss_pred eEEEEeCCCceeeeeeccCCCCCeEEEEECC--CCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
.|++||+.+++....+...+...+..++|+| ++++|++++.||.|++||.+...++..+..+..
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 229 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 9999999888777666666657889999999 999999999999999999998887777665543
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.7e-33 Score=220.80 Aligned_cols=211 Identities=17% Similarity=0.324 Sum_probs=185.8
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE---EEEEe--cccCCeEEEEECCCCCEEEEEcCCCeE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTL 93 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i 93 (247)
......+|...|.+++|+|++++|++++ ||.|++|+..++.. ...+. .|...+.+++|+|+++.+++++.|+.|
T Consensus 43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 3344458999999999999999999998 99999999876542 22333 678889999999999999999999999
Q ss_pred EEEECCCce--EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393 94 KIWELSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 171 (247)
Q Consensus 94 ~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 171 (247)
++||+.+++ ....+..+...+.+++|+|+++.+++++.|+.|++||+++++.+..+..|...+.+++|+|++.+++++
T Consensus 122 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 201 (337)
T 1gxr_A 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE
Confidence 999998876 556677888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232 (247)
Q Consensus 172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 232 (247)
+.||.+++||+++++....+. ....+..++|+|++++|++++.||.|++||.+......
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred ecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence 999999999999988766553 45678999999999999999999999999998876543
No 49
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=9.3e-34 Score=230.47 Aligned_cols=208 Identities=23% Similarity=0.438 Sum_probs=184.7
Q ss_pred EecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCC-------eEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeE
Q psy4393 23 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTL 93 (247)
Q Consensus 23 ~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i 93 (247)
+.+|.+.|.+++|+| ++++|++|+.||.|++|++.++ .....+.+|...|.+++|+|++ +.+++++.|+.|
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i 156 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEE
Confidence 457999999999999 9999999999999999999876 4567788899999999999998 699999999999
Q ss_pred EEEECCCceEEEEE--ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee-cCCCCC-eEEEEECCCCCEEE
Q psy4393 94 KIWELSSGKCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-PAHSDP-VSAVHFNRDGSLIV 169 (247)
Q Consensus 94 ~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~ 169 (247)
++||+.+++....+ ..|...+.+++|+|++.++++++.|+.|++||+++++.+..+ ..|.+. +.++.|+|++.+|+
T Consensus 157 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILT 236 (402)
T ss_dssp EEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEE
T ss_pred EEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEE
Confidence 99999999988888 788999999999999999999999999999999999988888 677765 88999999999999
Q ss_pred Ee---cCCCeEEEEeCCCcee-eeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcce
Q psy4393 170 SS---SYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTP 230 (247)
Q Consensus 170 ~~---~~dg~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~ 230 (247)
+| +.|+.|++||+++++. .......+...+..++|+|++++|++++ .||.|++||.+..++
T Consensus 237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred EeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 99 7899999999988654 3333334556789999999999997554 799999999998874
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.9e-34 Score=232.90 Aligned_cols=208 Identities=20% Similarity=0.277 Sum_probs=183.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
..+....|+|++++|++++.||.|++||..++.....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 33455578999999999999999999999988877777789999999999999999999999999999999999888899
Q ss_pred ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC---CCCe---------------------EEEEECC
Q psy4393 108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH---SDPV---------------------SAVHFNR 163 (247)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~i---------------------~~~~~~~ 163 (247)
.+|...|.+++|+|++.++++++.|+.|++||+++++.+..+..+ ...+ .+++|+|
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 999999999999999999999999999999999999988877642 3334 4455678
Q ss_pred CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCCcc-eEEEEc
Q psy4393 164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKVVT-PAIICS 235 (247)
Q Consensus 164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~~ 235 (247)
+++++++++.||.|++||+++++....+...+...+.+++|+|+++ +|++++.||.|++||.+... ++..+.
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 9999999999999999999998887777666778899999999999 99999999999999998764 344444
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.6e-33 Score=240.09 Aligned_cols=214 Identities=33% Similarity=0.550 Sum_probs=188.7
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
....+.+|...|.+++|+|++++|++|+.||.|++||+.++.....+.+|...|.+++|+|+++.|++++.|+.|++||.
T Consensus 422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~ 501 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEEE---ecCCccEEEEEEcCCC--CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC
Q psy4393 99 SSGKCLKTL---KGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 173 (247)
Q Consensus 99 ~~~~~~~~~---~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 173 (247)
......... .+|...|.+++|+|++ ..+++++.|+.|++||+++++....+..|.+.|.+++|+|++++|++|+.
T Consensus 502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp TSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 655433222 3577789999999986 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 235 (247)
||.|++||+++++.+..+. ....+.+++|+|++.+|++++ ++.|+|||.+....+..+.
T Consensus 582 Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 582 DGVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp TSBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred CCeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence 9999999999998776543 345799999999998877765 6779999999887665543
No 52
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.7e-34 Score=231.12 Aligned_cols=207 Identities=24% Similarity=0.439 Sum_probs=179.7
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS 99 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 99 (247)
...+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++....+.+|...|.+++|+|+++.+++++.|+.|++||++
T Consensus 132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 34456899999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred CceEEEEEecC---CccEEE---------------------EEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCC
Q psy4393 100 SGKCLKTLKGH---SNYVFC---------------------CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSD 154 (247)
Q Consensus 100 ~~~~~~~~~~~---~~~v~~---------------------~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~ 154 (247)
+++.+..+..+ ...+.+ ++|+|+++++++++.||.|++||+++++.+..+. .|..
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 291 (420)
T 3vl1_A 212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC 291 (420)
T ss_dssp TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS
T ss_pred CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC
Confidence 99888877642 333444 4457889999999999999999999988776664 4778
Q ss_pred CeEEEEECCCCC-EEEEecCCCeEEEEeCCCcee-eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393 155 PVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV 227 (247)
Q Consensus 155 ~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 227 (247)
.+.+++|+|++. +|++++.||.|++||+++++. +..+..++..++..+.+ +++++|++++.||.|++||...
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 999999999999 999999999999999998754 55555556678888855 5788999999999999999876
No 53
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-33 Score=222.60 Aligned_cols=211 Identities=27% Similarity=0.389 Sum_probs=181.6
Q ss_pred eEEEEEecCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCC--CCEEEEEcCCC
Q psy4393 18 VLKFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDK 91 (247)
Q Consensus 18 ~~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~ 91 (247)
.....+.+|...|.+++|+++ +++|++++.||.|++||..+++ ....+..|...|.+++|+|+ +..+++++.|+
T Consensus 46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 344567789999999999987 9999999999999999998886 55667778899999999999 99999999999
Q ss_pred eEEEEECCCce--EEEEEecCCccEEEEEEcC-------------CCCEEEEeeCCCCEEEEECCCCe----EEEeecCC
Q psy4393 92 TLKIWELSSGK--CLKTLKGHSNYVFCCNFNP-------------QSNLIVSGSFDESVRIWDVRTGK----CLKTLPAH 152 (247)
Q Consensus 92 ~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~ 152 (247)
.|++||+.+.. ....+..|...+.++.|+| ++.++++++.|+.|++||++++. ....+..|
T Consensus 126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h 205 (379)
T 3jrp_A 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 205 (379)
T ss_dssp EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence 99999998763 3445678888999999999 69999999999999999998764 44567789
Q ss_pred CCCeEEEEECCC---CCEEEEecCCCeEEEEeCCCcee--eeee--ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393 153 SDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQC--LKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225 (247)
Q Consensus 153 ~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~--~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 225 (247)
..+|.+++|+|+ +.+|++++.||.|++||+.+++. .... ...+...+..++|+|++++|++++.||.|++||.
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 999999999999 89999999999999999987631 1111 2235678999999999999999999999999998
Q ss_pred CCc
Q psy4393 226 KVV 228 (247)
Q Consensus 226 ~~~ 228 (247)
+..
T Consensus 286 ~~~ 288 (379)
T 3jrp_A 286 NLE 288 (379)
T ss_dssp EET
T ss_pred CCC
Confidence 743
No 54
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-32 Score=232.88 Aligned_cols=213 Identities=39% Similarity=0.663 Sum_probs=189.2
Q ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS 100 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 100 (247)
..+.+|...|.+++|+|++++|++++.||.+++|+. +++....+.+|...|.+++|+|++++|++++.|+.|++||. +
T Consensus 338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~ 415 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 415 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-C
Confidence 456789999999999999999999999999999995 56777888889999999999999999999999999999995 5
Q ss_pred ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180 (247)
Q Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 180 (247)
++.+..+.+|...|.+++|+|+++++++++.|+.|++||. +++.+..+..|...+.+++|+|++++|++++.|+.|++|
T Consensus 416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw 494 (577)
T 2ymu_A 416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 6777888999999999999999999999999999999996 466778888999999999999999999999999999999
Q ss_pred eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
|. +++.+..+. .+...|++++|+|++++|++++.||.|+|||. +++++..+..+.+
T Consensus 495 ~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~ 550 (577)
T 2ymu_A 495 NR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 550 (577)
T ss_dssp ET-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred cC-CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC
Confidence 96 456555543 45678999999999999999999999999995 5566666666554
No 55
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-34 Score=232.80 Aligned_cols=222 Identities=18% Similarity=0.294 Sum_probs=185.0
Q ss_pred CCceEEEEE-ecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCC---Ce---EEEEEecccCCeEEEEECCCCCEEEE
Q psy4393 15 PNYVLKFTL-AGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD---GK---FEKTISGHKLGISDVAWSSDSRLLVS 86 (247)
Q Consensus 15 ~~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~ 86 (247)
+...+..++ .+|.+.|++++|+| ++++|++|+.||.|++||..+ +. ....+ .|...|.+++|+|+++.|++
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 444556677 78999999999999 999999999999999999865 32 12222 47889999999999999999
Q ss_pred EcCCCeEEEEECC---CceEEEEEec------------CCccEEEEE--EcCCCCEEEEeeCCCCEEEEECCCCeEEEee
Q psy4393 87 GSDDKTLKIWELS---SGKCLKTLKG------------HSNYVFCCN--FNPQSNLIVSGSFDESVRIWDVRTGKCLKTL 149 (247)
Q Consensus 87 ~~~d~~i~v~d~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 149 (247)
++.|+.|++||+. +++....... +...+.++. +++++.++++++.|+.|++||+++++.+..+
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 9999999999994 4444333221 334455555 5678999999999999999999999999888
Q ss_pred cC--CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEEC----CCCCEEEEEEcCCeEEEE
Q psy4393 150 PA--HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS----PNGKYILAATLDNTLKLW 223 (247)
Q Consensus 150 ~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~vw 223 (247)
.. |...|.+++|+|++.+|++|+.||.|++||+++++.+..+...+..+|.+++|+ |++++|++++.||.|++|
T Consensus 209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 87 788999999999999999999999999999999988887765566689999555 568899999999999999
Q ss_pred ECCCcceEEEEccC
Q psy4393 224 DSKVVTPAIICSTP 237 (247)
Q Consensus 224 d~~~~~~~~~~~~~ 237 (247)
|.+....+..+..+
T Consensus 289 d~~~~~~~~~~~~~ 302 (437)
T 3gre_A 289 NFVKGHCQYAFINS 302 (437)
T ss_dssp ETTTTEEEEEEESS
T ss_pred EcCCCcEEEEEEcC
Confidence 99998887777654
No 56
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3e-33 Score=226.52 Aligned_cols=218 Identities=18% Similarity=0.254 Sum_probs=190.5
Q ss_pred ceEEEEEecCCCCeEEEEECCC----C---CEEEEEeCCCeEEEEecCCCeE-----EEEEecc-----cCCeEEEEEC-
Q psy4393 17 YVLKFTLAGHTKAVSSVKFSPN----G---EWLASSSADKLIKIWGAYDGKF-----EKTISGH-----KLGISDVAWS- 78 (247)
Q Consensus 17 ~~~~~~~~~h~~~v~~~~~s~~----~---~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~~-----~~~v~~~~~~- 78 (247)
+....++.+|...|.+++|+|+ + ++|++++.||.|++|+..++.. ...+..| ...|.+++|+
T Consensus 52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 3345667799999999999999 9 9999999999999999987765 6777777 5889999999
Q ss_pred ---CCCCE-EEEEcCCCeEEEEECCC------ceEEE-----EEe-------cCCccEEEEEEcCCCCEEEEeeCCCCEE
Q psy4393 79 ---SDSRL-LVSGSDDKTLKIWELSS------GKCLK-----TLK-------GHSNYVFCCNFNPQSNLIVSGSFDESVR 136 (247)
Q Consensus 79 ---~~~~~-l~~~~~d~~i~v~d~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 136 (247)
|+++. +++++.|+.|++||+.+ ++.+. .+. .+...+.+++|+|++ ++++++.|+.|+
T Consensus 132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~ 210 (397)
T 1sq9_A 132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQ 210 (397)
T ss_dssp CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEE
T ss_pred ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEE
Confidence 99999 99999999999999988 65554 553 367889999999999 999999999999
Q ss_pred EEECCCCeEEEeecC---C---CCCeEEEEECCCCCEEEEecCC---CeEEEEeCCCceeeeeeccC------------C
Q psy4393 137 IWDVRTGKCLKTLPA---H---SDPVSAVHFNRDGSLIVSSSYD---GLCRIWDTASGQCLKTLIDD------------D 195 (247)
Q Consensus 137 v~d~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~------------~ 195 (247)
+||+++++.+..+.. | ..++.+++|+|++.+|++++.| |.|++||+++++.+..+... +
T Consensus 211 i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (397)
T 1sq9_A 211 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 290 (397)
T ss_dssp EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred EEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc
Confidence 999999999998888 8 8999999999999999999999 99999999998877766441 5
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393 196 NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 196 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 235 (247)
...+.+++|+|++++|++++.||.|++||.+..+++..+.
T Consensus 291 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 6789999999999999999999999999999998888877
No 57
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=219.44 Aligned_cols=223 Identities=22% Similarity=0.328 Sum_probs=180.0
Q ss_pred CceEEEEEecCCCCeEEEEECCC---CCEEEEEeCCCeEEEEecCC-CeEE-EEEecccCCeEEEEECCCCCEEEEEcCC
Q psy4393 16 NYVLKFTLAGHTKAVSSVKFSPN---GEWLASSSADKLIKIWGAYD-GKFE-KTISGHKLGISDVAWSSDSRLLVSGSDD 90 (247)
Q Consensus 16 ~~~~~~~~~~h~~~v~~~~~s~~---~~~l~~~~~dg~v~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d 90 (247)
+......+.+|.+.|++++|+|+ |++|++|+.||.|++|+..+ +... ..+.+|...|.+++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 34445567899999999999999 69999999999999999986 4444 6778899999999999999999999999
Q ss_pred CeEEEEECCCceEEEEEecCCccEEEEEE--cCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC---------------
Q psy4393 91 KTLKIWELSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS--------------- 153 (247)
Q Consensus 91 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------------- 153 (247)
+.|++||+.+++... +..|...+.++.| +|++.++++++.|+.|++||+++++.+..+..+.
T Consensus 108 g~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVA 186 (368)
T ss_dssp SEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEE
T ss_pred CcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEE
Confidence 999999999888665 5668889999999 8999999999999999999999877655544332
Q ss_pred --------------------------CCeEEEEECCCCCE----EEEecCCCeEEEEeCCCce---eeeeeccCCC----
Q psy4393 154 --------------------------DPVSAVHFNRDGSL----IVSSSYDGLCRIWDTASGQ---CLKTLIDDDN---- 196 (247)
Q Consensus 154 --------------------------~~i~~~~~~~~~~~----l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~---- 196 (247)
....++.+.++... +++++.||.+++||++... ....+..+..
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 22344444443332 8999999999999998763 2333322211
Q ss_pred -------CCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 197 -------PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 197 -------~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
.++.+++|+|++++|++++.||.|++||.+...++..+..+..
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 316 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ 316 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC
Confidence 1699999999999999999999999999999888777665443
No 58
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.7e-32 Score=249.38 Aligned_cols=221 Identities=29% Similarity=0.516 Sum_probs=199.5
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
....+.+|.+.|++++|+|+|++|++|+.||.|++||..+++....+.+|...|.+++|+|+++++++++.|+.|++||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCccEEEEEEcC--CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCe
Q psy4393 99 SSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 176 (247)
Q Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 176 (247)
.+++.+..+.+|...+.++.|+| ++.++++|+.|+.|++||+++++.+..+..|...|.+++|+|++.++++++.||.
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 99999999999999999999999 5668999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCceeeeeec------------------------------------------------------cCCCCCeEEE
Q psy4393 177 CRIWDTASGQCLKTLI------------------------------------------------------DDDNPPVSFV 202 (247)
Q Consensus 177 i~v~d~~~~~~~~~~~------------------------------------------------------~~~~~~v~~~ 202 (247)
|++||+.+++....+. ..+...+..+
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 9999998765433221 1344567889
Q ss_pred EECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 203 KFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 203 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
+|+|+++++++++.||.|++||.....++..+..+..
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 883 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS 883 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence 9999999999999999999999998887777666544
No 59
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-32 Score=212.06 Aligned_cols=220 Identities=24% Similarity=0.362 Sum_probs=192.6
Q ss_pred CCCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393 12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK 91 (247)
Q Consensus 12 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 91 (247)
++...+.+..++.+|.+.|.+++| |++++|++++.||.|++||..++.....+..|...|.+++|+|+++.+++++.|+
T Consensus 3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp --CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred CccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence 355566778889999999999999 9999999999999999999998888888888999999999999999999999999
Q ss_pred eEEEEECCCc---eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECC-CCCE
Q psy4393 92 TLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSL 167 (247)
Q Consensus 92 ~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 167 (247)
.+++|++... +....+..|...+.++.| +++.+++++.|+.+++|| .++....+..|..++.++.+.| ++..
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence 9999998654 456677889999999999 577999999999999999 6777888889999999999988 8999
Q ss_pred EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
+++++.||.+++||. .+....+...+...+.+++|+|++. +++++.||.|++||.+..+++..+..+..
T Consensus 158 l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 226 (313)
T 3odt_A 158 FLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES 226 (313)
T ss_dssp EEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc
Confidence 999999999999994 4445555555778899999999998 99999999999999999988887775544
No 60
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7e-33 Score=227.65 Aligned_cols=210 Identities=20% Similarity=0.405 Sum_probs=175.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-----------EEEEEeccc------------CCeEEEEECCCC-
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------FEKTISGHK------------LGISDVAWSSDS- 81 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~- 81 (247)
|.+.|++++|+|+|++|++|+.||.|++|+..++. ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 57899999999999999999999999999988765 466778887 789999999998
Q ss_pred -CEEEEEcCCCeEEEEECCCceEE---------------------------------------EE-EecCCccEEEEEEc
Q psy4393 82 -RLLVSGSDDKTLKIWELSSGKCL---------------------------------------KT-LKGHSNYVFCCNFN 120 (247)
Q Consensus 82 -~~l~~~~~d~~i~v~d~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~ 120 (247)
..+++++.|+.|++||+.++... +. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764431 12 35688899999999
Q ss_pred CCCCEEEEeeCCCCEEEEECCC-CeEEE-------eecCCCCCeEEEEECCCC-CEEEEecCCCeEEEEeCCCcee----
Q psy4393 121 PQSNLIVSGSFDESVRIWDVRT-GKCLK-------TLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQC---- 187 (247)
Q Consensus 121 ~~~~~l~~~~~d~~i~v~d~~~-~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~---- 187 (247)
|+++++++| .|+.|++||++. ++.+. .+..|...|.+++|+|++ .+|++|+.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 799999999984 44443 255788899999999998 9999999999999999998775
Q ss_pred eeeeccCCC-----------CCeEEEEECCCCCEEEEEEcCCeEEEEECCC-cceEEEEccC
Q psy4393 188 LKTLIDDDN-----------PPVSFVKFSPNGKYILAATLDNTLKLWDSKV-VTPAIICSTP 237 (247)
Q Consensus 188 ~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~ 237 (247)
...+..+.. ..|.+++|+|++++|++++. +.|++||.+. ..++..+..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence 344433222 28999999999999999998 9999999987 6666666554
No 61
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=244.24 Aligned_cols=208 Identities=16% Similarity=0.208 Sum_probs=180.6
Q ss_pred EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 101 (247)
...+|...|++++|+|++++||+|+.||.|++|+....+....+ .|..+|.+++|+| +++|++++.|+.|++||+.++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 34589999999999999999999999999999998776654443 4677899999999 889999999999999999999
Q ss_pred eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE-----------EeecCCCCCeEEEEECCC-CCEEE
Q psy4393 102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL-----------KTLPAHSDPVSAVHFNRD-GSLIV 169 (247)
Q Consensus 102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-----------~~~~~~~~~i~~~~~~~~-~~~l~ 169 (247)
+.+..+. +...|.+++|+|+++++++|+.||.|++||+++++.. .....|.++|.+++|+|+ +..++
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 8887776 5678999999999999999999999999999988753 223568889999999996 46899
Q ss_pred EecCCCeEEEEeCCCceeeeeeccC-----------------CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393 170 SSSYDGLCRIWDTASGQCLKTLIDD-----------------DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232 (247)
Q Consensus 170 ~~~~dg~i~v~d~~~~~~~~~~~~~-----------------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 232 (247)
+|+.||.+ +||+++++....+..+ +...|.+++|+|+|++|++++.||.|++||.++++++.
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 9999998877665432 23569999999999999999999999999999887765
Q ss_pred E
Q psy4393 233 I 233 (247)
Q Consensus 233 ~ 233 (247)
.
T Consensus 248 ~ 248 (902)
T 2oaj_A 248 A 248 (902)
T ss_dssp E
T ss_pred E
Confidence 4
No 62
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-33 Score=225.66 Aligned_cols=206 Identities=22% Similarity=0.386 Sum_probs=177.7
Q ss_pred EEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEE---ecccCCeEEEEECCCCCEEEEEcCCCeEE
Q psy4393 19 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSSDSRLLVSGSDDKTLK 94 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 94 (247)
....+.+|...|.+++|+| ++++|++++.||.|++||..+++....+ ..|...|.+++|+|+++.+++++.|+.|+
T Consensus 107 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 186 (366)
T 3k26_A 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 186 (366)
T ss_dssp EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEE
Confidence 4456778999999999999 8999999999999999999998888887 67888999999999999999999999999
Q ss_pred EEECCCceEEEEEe----------------------------cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-
Q psy4393 95 IWELSSGKCLKTLK----------------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC- 145 (247)
Q Consensus 95 v~d~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~- 145 (247)
+||+.+++....+. .|...|.+++|+ ++++++++.|+.|++||++++..
T Consensus 187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~ 264 (366)
T 3k26_A 187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDD 264 (366)
T ss_dssp EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCC
T ss_pred EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccc
Confidence 99998765433222 378889999998 67999999999999999987643
Q ss_pred -------------EEeecCCCCCeEEEEECCC--CCEEEEecCCCeEEEEeCCCceeee----eeccC-CCCCeEEEEEC
Q psy4393 146 -------------LKTLPAHSDPVSAVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLK----TLIDD-DNPPVSFVKFS 205 (247)
Q Consensus 146 -------------~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~----~~~~~-~~~~v~~~~~s 205 (247)
+..+..|...+.+++|+|+ +.+|++++.||.|++||+.+++... .+..+ +...|..++|+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 344 (366)
T 3k26_A 265 IDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFS 344 (366)
T ss_dssp GGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEEC
T ss_pred ccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeC
Confidence 6677788889999999999 9999999999999999999875432 33222 25789999999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q psy4393 206 PNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 206 ~~~~~l~~~~~dg~i~vwd~~ 226 (247)
|++++|++++.||.|++||..
T Consensus 345 ~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 345 RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCeEEEEeCCCEEEEEEec
Confidence 999999999999999999975
No 63
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-32 Score=222.86 Aligned_cols=208 Identities=22% Similarity=0.296 Sum_probs=181.9
Q ss_pred EEEEecC-----CCCeEEEEEC----CCCCE-EEEEeCCCeEEEEecCC------CeEEE-----EEe-------cccCC
Q psy4393 20 KFTLAGH-----TKAVSSVKFS----PNGEW-LASSSADKLIKIWGAYD------GKFEK-----TIS-------GHKLG 71 (247)
Q Consensus 20 ~~~~~~h-----~~~v~~~~~s----~~~~~-l~~~~~dg~v~iw~~~~------~~~~~-----~~~-------~~~~~ 71 (247)
...+..| ...|.+++|+ |++++ |++++.||.|++||... +.... .+. .|...
T Consensus 109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (397)
T 1sq9_A 109 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 188 (397)
T ss_dssp EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC
Confidence 4556677 5899999999 99999 99999999999999877 44433 553 36778
Q ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec---C---CccEEEEEEcCCCCEEEEeeCC---CCEEEEECCC
Q psy4393 72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG---H---SNYVFCCNFNPQSNLIVSGSFD---ESVRIWDVRT 142 (247)
Q Consensus 72 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~ 142 (247)
+.+++|+|++ .+++++.|+.|++||+++++.+..+.. | ...+.+++|+|++.++++++.| +.|++||+++
T Consensus 189 i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 189 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred ceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 9999999999 999999999999999999998888888 8 8899999999999999999999 9999999999
Q ss_pred CeEEEeecC-------------CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeecc-----CC---------
Q psy4393 143 GKCLKTLPA-------------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-----DD--------- 195 (247)
Q Consensus 143 ~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----~~--------- 195 (247)
++.+..+.. |...+.+++|+|++.+|++++.||.|++||+.+++.+..+.. .+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 268 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccc
Confidence 999888887 899999999999999999999999999999999988777651 23
Q ss_pred ------CCCeEEEEECCCC----------CEEEEEEcCCeEEEEECCCc
Q psy4393 196 ------NPPVSFVKFSPNG----------KYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 196 ------~~~v~~~~~s~~~----------~~l~~~~~dg~i~vwd~~~~ 228 (247)
..+|..++|+|++ ++|++++.||.|++||.+++
T Consensus 348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 6789999999998 79999999999999998764
No 64
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-33 Score=225.91 Aligned_cols=215 Identities=15% Similarity=0.283 Sum_probs=186.7
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC----CeEEEEEecccCCeEEEEECCC-CCEEEEEcCCCeEEEEECC
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELS 99 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~ 99 (247)
.|...|.+++|+|++++|++++.||.|++|+... ......+.+|...|.+++|+|+ ++++++++.|+.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4788999999999999999999999999999976 3467778889999999999998 8999999999999999998
Q ss_pred Cce------EEEE---EecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCC------CCCeEEEEECC
Q psy4393 100 SGK------CLKT---LKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAH------SDPVSAVHFNR 163 (247)
Q Consensus 100 ~~~------~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~i~~~~~~~ 163 (247)
+++ .... ...|...+.+++|+|+ +.++++++.|+.|++||+++++.+..+..+ ...+.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 2222 3567888999999998 789999999999999999999988888766 78899999999
Q ss_pred CC-CEEEEecCCC---eEEEEeCCCceeeeeecc-CCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 164 DG-SLIVSSSYDG---LCRIWDTASGQCLKTLID-DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 164 ~~-~~l~~~~~dg---~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
++ .++++++.++ .|++||+++++....... .+...+..++|+| ++++|++++.||.|++||.++.+++..+..+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 97 6899999998 999999998643333333 5677899999999 9999999999999999999999888877665
Q ss_pred Cc
Q psy4393 238 LN 239 (247)
Q Consensus 238 ~~ 239 (247)
..
T Consensus 305 ~~ 306 (416)
T 2pm9_A 305 GN 306 (416)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 65
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=235.65 Aligned_cols=205 Identities=14% Similarity=0.118 Sum_probs=173.5
Q ss_pred EEEecCCCCeEEEEECCC------CCEEEEEeCCCeEEEEecCCCeE-----------EEEEecccCCeEEEEECCCCCE
Q psy4393 21 FTLAGHTKAVSSVKFSPN------GEWLASSSADKLIKIWGAYDGKF-----------EKTISGHKLGISDVAWSSDSRL 83 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~------~~~l~~~~~dg~v~iw~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~ 83 (247)
.++..|.+.|.+++|+|+ +.+||+++.||.|++|++..+.. ...+.+|...|.+++|+++ ..
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~ 279 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TT 279 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-Ce
Confidence 446678899999999997 57999999999999999875531 1356778889999999986 48
Q ss_pred EEEEcCCCeEEEEECCCce-EEEEEecCCccEEEE--EEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeecCCC--CCeE
Q psy4393 84 LVSGSDDKTLKIWELSSGK-CLKTLKGHSNYVFCC--NFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHS--DPVS 157 (247)
Q Consensus 84 l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~i~ 157 (247)
|++|+.||.|++||++++. ....+.+|...|.++ .|+|++ .+|++++.|+.|++||+++++.+..+..|. ..+.
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~ 359 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV 359 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence 9999999999999998763 445678899999998 578887 899999999999999999877655554443 2478
Q ss_pred EEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393 158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV 227 (247)
Q Consensus 158 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 227 (247)
+++|+|++..+++++.|+.|++||+++++....+. .+...|..++|+|+|++|++|+.||+|++||...
T Consensus 360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred ceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 89999999999999999999999999987766554 4667899999999999999999999999999754
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.3e-32 Score=218.34 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=182.0
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE--ecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSDDKTLKIW 96 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 96 (247)
...++.+|...|.+++|+|++++|++++.||.|++|+..+++..... ..|...|.+++|+|+++++++++.|+.|++|
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence 45667789999999999999999999999999999999887655443 5678889999999999999999999999999
Q ss_pred ECCCceE---EEEE-ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEEC------------------CCCeEEEeecCCCC
Q psy4393 97 ELSSGKC---LKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV------------------RTGKCLKTLPAHSD 154 (247)
Q Consensus 97 d~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~------------------~~~~~~~~~~~~~~ 154 (247)
|+..+.. ...+ ..|...+.+++|+|++.++++++.|+.+++||+ ..++.+..+..|..
T Consensus 124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
T 1k8k_C 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 203 (372)
T ss_dssp EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC
Confidence 9987652 2233 566888999999999999999999999999995 36778888889999
Q ss_pred CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393 155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV 227 (247)
Q Consensus 155 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 227 (247)
.+.+++|+|++.+|++++.|+.|++||+++++.+..+. .+..++..++|+|++++|+++ .|+.|++||.+.
T Consensus 204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999999999999999999999999988776664 445689999999999988887 899999999987
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=218.62 Aligned_cols=201 Identities=23% Similarity=0.454 Sum_probs=180.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK 105 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 105 (247)
|...|++++|+|++++|++++.||.|++|+ .++.....+..|...|.+++|+|+++.+++++.|+.|++||+.+++...
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 678999999999999999999999999999 5777888888899999999999999999999999999999998765443
Q ss_pred E--------------------------------------------------------EecCCccEEEEEEcCCCCEEEEe
Q psy4393 106 T--------------------------------------------------------LKGHSNYVFCCNFNPQSNLIVSG 129 (247)
Q Consensus 106 ~--------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~ 129 (247)
. +..|...+.+++|+|++.+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 2 23456678999999999999999
Q ss_pred eCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC
Q psy4393 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 209 (247)
Q Consensus 130 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 209 (247)
+.|+.|++||+++++.+..+..|...+.+++|+|++ .+++++.|+.|++||+.+++.+..+. .+...+..++|+|+++
T Consensus 266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQDGQ 343 (425)
T ss_dssp ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTTSS
T ss_pred cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCCCC
Confidence 999999999999998888888899999999999999 99999999999999999988776654 4456899999999999
Q ss_pred EEEEEEcCCeEEEEECCCcc
Q psy4393 210 YILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 210 ~l~~~~~dg~i~vwd~~~~~ 229 (247)
+|++++.||.|++||.+...
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEEEETTSCEEEEECHHHH
T ss_pred EEEEEECCCeEEEEECCCCc
Confidence 99999999999999999887
No 68
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-32 Score=220.52 Aligned_cols=207 Identities=22% Similarity=0.345 Sum_probs=184.0
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE----------------------------------
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---------------------------------- 64 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~---------------------------------- 64 (247)
....+.+|...|.+++|+|++++|++++.||.|++|+..+++....
T Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (425)
T 1r5m_A 141 LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF 220 (425)
T ss_dssp EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEE
T ss_pred eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE
Confidence 3455678999999999999999999999999999999876654332
Q ss_pred ----------------------EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCC
Q psy4393 65 ----------------------ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122 (247)
Q Consensus 65 ----------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 122 (247)
+..|...|.+++|+|+++.+++++.|+.|++||+.+++....+..+...+.++.|+|+
T Consensus 221 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 300 (425)
T 1r5m_A 221 VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD 300 (425)
T ss_dssp EEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT
T ss_pred EEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC
Confidence 2345677899999999999999999999999999998888888889999999999999
Q ss_pred CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce----------------
Q psy4393 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---------------- 186 (247)
Q Consensus 123 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------------- 186 (247)
+ .+++++.|+.|++||+++++.+..+..|..++.+++|+|++.+|++++.||.|++||+.+++
T Consensus 301 ~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 379 (425)
T 1r5m_A 301 D-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNP 379 (425)
T ss_dssp T-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------C
T ss_pred C-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCc
Confidence 9 99999999999999999999999999999999999999999999999999999999998877
Q ss_pred ----eeeeeccCCCC-CeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 187 ----CLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 187 ----~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
.+..+..+... .|..++|+|++++|++++.||.|++||.+
T Consensus 380 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 380 LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 55555444333 89999999999999999999999999975
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.6e-32 Score=219.31 Aligned_cols=210 Identities=22% Similarity=0.426 Sum_probs=180.1
Q ss_pred EEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEe-------------cccCCeEEEEECC-CCCEEE
Q psy4393 21 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS-------------GHKLGISDVAWSS-DSRLLV 85 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~l~ 85 (247)
..+.+|.+.|.+++|+| ++++|++|+.||.|++|+..++.....+. +|...|.+++|+| ++..++
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 45568999999999999 99999999999999999998764433222 4788999999999 778999
Q ss_pred EEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCC---CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEEC
Q psy4393 86 SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 162 (247)
Q Consensus 86 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 162 (247)
+++.|+.|++||+.+++....+. +...+.++.+.+. +.++++++.++.|++||+++++.+..+..|...|.+++|+
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~ 195 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS 195 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC
T ss_pred EEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC
Confidence 99999999999999988877766 5667888999884 4599999999999999999999888999999999999999
Q ss_pred CCCC-EEEEecCCCeEEEEeCCCceee-eee--------------ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 163 RDGS-LIVSSSYDGLCRIWDTASGQCL-KTL--------------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 163 ~~~~-~l~~~~~dg~i~v~d~~~~~~~-~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
|++. ++++++.||.|++||+++++.. ..+ ...+...|.+++|+|++++|++++.||.|++||.+
T Consensus 196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 9998 5899999999999999876522 211 13456789999999999999999999999999998
Q ss_pred CcceE
Q psy4393 227 VVTPA 231 (247)
Q Consensus 227 ~~~~~ 231 (247)
.....
T Consensus 276 ~~~~~ 280 (408)
T 4a11_B 276 NGENT 280 (408)
T ss_dssp TCCBC
T ss_pred CCccc
Confidence 87654
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-31 Score=211.46 Aligned_cols=218 Identities=18% Similarity=0.279 Sum_probs=192.4
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC-----CeE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD-----KTL 93 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i 93 (247)
...++.+|...|.+++|+|++++|++++.||.|++||+.+++....+. +...+.+++|+|+++.+++++.+ +.|
T Consensus 66 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i 144 (369)
T 3zwl_B 66 RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144 (369)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEE
T ss_pred hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEE
Confidence 455677899999999999999999999999999999999988887777 77889999999999999999998 999
Q ss_pred EEEECCCce-----------EEEEEecCCc--cEEEEEEcCCCCEEEEeeCCCCEEEEECCC-CeEEEeecCCCCCeEEE
Q psy4393 94 KIWELSSGK-----------CLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAV 159 (247)
Q Consensus 94 ~v~d~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~ 159 (247)
++||+.... ....+..+.. .+.+++|+|+++.+++++.||.|++||+++ ++.+..+..|...+.++
T Consensus 145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 999987543 2233444544 799999999999999999999999999998 78888888999999999
Q ss_pred EECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC--------------eEEEEEC
Q psy4393 160 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN--------------TLKLWDS 225 (247)
Q Consensus 160 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~vwd~ 225 (247)
+|+|++.+|++++.|+.|++||+++++....+. ....+..++|+|+++++++++.++ .+++||.
T Consensus 225 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred EECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 999999999999999999999999988777664 456789999999999999999988 8999999
Q ss_pred CCcceEEEEccCCc
Q psy4393 226 KVVTPAIICSTPLN 239 (247)
Q Consensus 226 ~~~~~~~~~~~~~~ 239 (247)
....++..+..+..
T Consensus 303 ~~~~~~~~~~~~~~ 316 (369)
T 3zwl_B 303 IFEEEIGRVQGHFG 316 (369)
T ss_dssp TTCCEEEEEECCSS
T ss_pred CCCcchhheecccC
Confidence 99888877766544
No 71
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.9e-31 Score=208.61 Aligned_cols=211 Identities=31% Similarity=0.546 Sum_probs=174.7
Q ss_pred eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
....++.+|...|.+++|+|++++|++++.|+.|++|+............+...+....+.+++..+++++.|+.+++||
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence 34566789999999999999999999999999999999998888888888888899999999999999999999999999
Q ss_pred CCCceEE-EEEecCCccEEEEEEcCCC--CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393 98 LSSGKCL-KTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 174 (247)
Q Consensus 98 ~~~~~~~-~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 174 (247)
....... ....+|...+..++|++++ .++++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++|+.|
T Consensus 157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D 236 (340)
T 4aow_A 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 236 (340)
T ss_dssp TTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 8765433 3445677889999998754 578899999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCceeeeeecc------------------------------------------------CCCCCeEEEEECC
Q psy4393 175 GLCRIWDTASGQCLKTLID------------------------------------------------DDNPPVSFVKFSP 206 (247)
Q Consensus 175 g~i~v~d~~~~~~~~~~~~------------------------------------------------~~~~~v~~~~~s~ 206 (247)
|.|++||+++.+.+..+.. .+...|.+++|+|
T Consensus 237 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 316 (340)
T 4aow_A 237 GQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316 (340)
T ss_dssp CEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred CeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence 9999999988765433211 1223456666777
Q ss_pred CCCEEEEEEcCCeEEEEECCCc
Q psy4393 207 NGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 207 ~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
++++|++|+.||.|+|||++++
T Consensus 317 dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 317 DGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp TSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCEEEEEeCCCEEEEEeCCCc
Confidence 7777777777777777766554
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-33 Score=227.04 Aligned_cols=205 Identities=16% Similarity=0.224 Sum_probs=168.0
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe---EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI 95 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 95 (247)
...++.+|...|.+++|+|++++|++++.|+.|++||..++. ....+..|...|.+++|+|+++.|++++.|+.|++
T Consensus 47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 126 (377)
T 3dwl_C 47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISV 126 (377)
T ss_dssp ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEE
T ss_pred EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEE
Confidence 334566899999999999999999999999999999998766 55667788999999999999999999999999999
Q ss_pred EECCCce---EEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECC------------------CCeEEEeecCCC
Q psy4393 96 WELSSGK---CLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR------------------TGKCLKTLPAHS 153 (247)
Q Consensus 96 ~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~------------------~~~~~~~~~~~~ 153 (247)
||+++++ ....+.. |...+.+++|+|+++++++++.|+.|++||++ .++.+..+ .|.
T Consensus 127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 205 (377)
T 3dwl_C 127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG 205 (377)
T ss_dssp CCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS
T ss_pred EEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC
Confidence 9998876 3566777 88999999999999999999999999999985 34455666 888
Q ss_pred CCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee----eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 154 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC----LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 154 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
..|.+++|+|++++|++++.||.|++||+.+++. +..+ ..+..++.+++|+|++++|++++.++.+ +|+..
T Consensus 206 ~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 206 GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV-KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE-ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee-cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999999999999999999999999999998876 3333 3456689999999999999988766655 67654
No 73
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=221.65 Aligned_cols=213 Identities=15% Similarity=0.140 Sum_probs=182.2
Q ss_pred ecCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecC--CCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 24 AGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAY--DGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 24 ~~h~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
.+|.+.|.+++|+|++++| ++++.||.|++|++. ++.....+. .+...|.+++|+|++++|++++.++.+++|++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 4677899999999999996 888899999999998 777777765 45678999999999999999999999999999
Q ss_pred CCceEEE----EEecCCccEEEEEEcCC---CCEEEEeeCCCCEEEEECCCCeEEEe-ecCCCCCeEEEEECCCCCEEEE
Q psy4393 99 SSGKCLK----TLKGHSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVS 170 (247)
Q Consensus 99 ~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~ 170 (247)
.++.... .+.+|...|.+++|+|+ +.++++++.|+.|++||+++++.+.. +..|...|.+++|+ ++.+|++
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s 257 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS 257 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence 8776443 66778899999999999 99999999999999999999887776 55889999999999 9999999
Q ss_pred ecCCCeEEEEeCCCceeeeeecc------------------------CCCCCeEEEEECCCCCEEEEEE-cCCeEEEEEC
Q psy4393 171 SSYDGLCRIWDTASGQCLKTLID------------------------DDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS 225 (247)
Q Consensus 171 ~~~dg~i~v~d~~~~~~~~~~~~------------------------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~ 225 (247)
++.|+.|++||+.+++.+..+.. .....+..++|+|++++|++++ .|+.|+|||.
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 99999999999999887665531 1234688999999999999999 8999999999
Q ss_pred --CCc---ceEEEEccC
Q psy4393 226 --KVV---TPAIICSTP 237 (247)
Q Consensus 226 --~~~---~~~~~~~~~ 237 (247)
... .++..+..+
T Consensus 338 ~~~~~~~l~~~~~~~~~ 354 (450)
T 2vdu_B 338 SEKQKGDLALKQIITFP 354 (450)
T ss_dssp CSSSTTCEEEEEEEECS
T ss_pred ccCCCCceeeccEeccC
Confidence 444 444444443
No 74
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=222.84 Aligned_cols=216 Identities=19% Similarity=0.379 Sum_probs=176.9
Q ss_pred CCceEEEEEecCC------------CCeEEEEECCCC--CEEEEEeCCCeEEEEecCCCeEE------------------
Q psy4393 15 PNYVLKFTLAGHT------------KAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFE------------------ 62 (247)
Q Consensus 15 ~~~~~~~~~~~h~------------~~v~~~~~s~~~--~~l~~~~~dg~v~iw~~~~~~~~------------------ 62 (247)
..+.....+.+|. +.|.+++|+|++ .+|++++.|+.|++|+..++...
T Consensus 69 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~ 148 (447)
T 3dw8_B 69 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTT 148 (447)
T ss_dssp CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCC
T ss_pred cceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCccc
Confidence 3455667788998 889999999998 78999999999999998653321
Q ss_pred ---------------------EE-EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC-ceEEE-------EEecCCc
Q psy4393 63 ---------------------KT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLK-------TLKGHSN 112 (247)
Q Consensus 63 ---------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~-------~~~~~~~ 112 (247)
.. ..+|...|.+++|+|+++.|+++ .|+.|++||+.+ ++... .+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (447)
T 3dw8_B 149 VTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE 227 (447)
T ss_dssp CCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC
T ss_pred ccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCc
Confidence 12 24688889999999999999998 799999999984 33433 2457888
Q ss_pred cEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeE----EEeecCCCC------------CeEEEEECCCCCEEEEecCCC
Q psy4393 113 YVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKC----LKTLPAHSD------------PVSAVHFNRDGSLIVSSSYDG 175 (247)
Q Consensus 113 ~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg 175 (247)
.|.+++|+|++ +++++++.|+.|++||+++++. +..+..|.. .|.+++|+|++++|++++. +
T Consensus 228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~ 306 (447)
T 3dw8_B 228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L 306 (447)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence 89999999998 9999999999999999998876 677777765 8999999999999999998 9
Q ss_pred eEEEEeCCC-ceeeeeeccCCC--C------------CeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393 176 LCRIWDTAS-GQCLKTLIDDDN--P------------PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232 (247)
Q Consensus 176 ~i~v~d~~~-~~~~~~~~~~~~--~------------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 232 (247)
.|++||+++ ++.+..+..+.. . .+..++|+|++++|++++.||.|++||.+..+.+.
T Consensus 307 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 307 SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred eEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 999999987 665555433211 0 12348999999999999999999999999887653
No 75
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-31 Score=235.01 Aligned_cols=218 Identities=26% Similarity=0.449 Sum_probs=195.8
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
...++.+|..+|.+++|+|++++|++++.||.|++|+..+++....+.+|...|.+++|+|+++.+++++.|+.|++||+
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 126 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc-eEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-CCeEEEEECC--CCCEEEEecC
Q psy4393 99 SSG-KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNR--DGSLIVSSSY 173 (247)
Q Consensus 99 ~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~ 173 (247)
.++ .....+..|...+.+++|+| ++..+++++.||.|++||++++.....+..+. ..+.+++|+| ++.++++++.
T Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 886 66777888999999999999 88999999999999999998887766665544 7899999999 9999999999
Q ss_pred CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
||.|++||+.+++....+. .+...+.+++|+|++++|++++.||.|++||..+..++..+..+
T Consensus 207 dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 207 DLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred CCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 9999999999988776654 45568999999999999999999999999999988777666554
No 76
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.3e-32 Score=214.74 Aligned_cols=211 Identities=17% Similarity=0.303 Sum_probs=177.4
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEE-EEeC---CCeEEEEecCCCeEEEEE-ecccCCeEEEEECCC---CCEEEEEcCC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLA-SSSA---DKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD---SRLLVSGSDD 90 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~-~~~~---dg~v~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~d 90 (247)
....+.+|...|.+++|+|++..++ +++. ||.|++|+..+++..... .+|...|.+++|+|+ ++++++++.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 4455678999999999999997554 5555 899999999887765443 368889999999998 6999999999
Q ss_pred CeEEEEECCCce-EEEEEecCCccEEEEE------EcCCCCEEEEeeCCCCEEEEECCCCe-EEEeecCCCC----CeEE
Q psy4393 91 KTLKIWELSSGK-CLKTLKGHSNYVFCCN------FNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSD----PVSA 158 (247)
Q Consensus 91 ~~i~v~d~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~----~i~~ 158 (247)
+.|++||+.+++ ....+.+|...|.++. |+|+++.+++++.|+.|++||+++++ .+..+..+.+ .+.+
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 999999999887 7788889999999995 46889999999999999999999876 5666665544 7888
Q ss_pred EE----ECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECC---CCCEEEEEEcCCeEEEEECCCcceE
Q psy4393 159 VH----FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP---NGKYILAATLDNTLKLWDSKVVTPA 231 (247)
Q Consensus 159 ~~----~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~ 231 (247)
++ |+|++.++++++.||.|++||+++++.... ..+...+.+++|+| ++++|++++.||.|++||.+...+.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 88 789999999999999999999999876443 34456899999999 9999999999999999998876543
No 77
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.5e-32 Score=214.97 Aligned_cols=206 Identities=20% Similarity=0.381 Sum_probs=177.8
Q ss_pred EecCCCCeEEEEECCC----CCEEEEEeCCCeEEEEecCCCeEEEEEec-----ccCCeEEEEECCC----CCEEEEEcC
Q psy4393 23 LAGHTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEKTISG-----HKLGISDVAWSSD----SRLLVSGSD 89 (247)
Q Consensus 23 ~~~h~~~v~~~~~s~~----~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~ 89 (247)
..+|.++|.+++|+|+ ...+++++.++.|++|+..+++....+.. +...|.+++|+|+ +.++++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 3489999999999984 44666677788999999987776666554 3467999999998 678999999
Q ss_pred CCeEEEEECCCceEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEee---cCCCCCeEEEEECCCC
Q psy4393 90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTL---PAHSDPVSAVHFNRDG 165 (247)
Q Consensus 90 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~ 165 (247)
|+.|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+++++.+..+ ..|...|.+++|+|++
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 173 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC
Confidence 99999999999999999999999999999999 9999999999999999999999988887 6789999999999999
Q ss_pred CEEEEecCCCeEEEEeCCCceeeeeec---------------------------cCCCCCeEEEEECCCCCEEEEEEcCC
Q psy4393 166 SLIVSSSYDGLCRIWDTASGQCLKTLI---------------------------DDDNPPVSFVKFSPNGKYILAATLDN 218 (247)
Q Consensus 166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~---------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg 218 (247)
.+|++++.||.|++||+++++....+. ..+...|.+++|+ +++|++++.||
T Consensus 174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~ 251 (366)
T 3k26_A 174 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCEN 251 (366)
T ss_dssp SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSS
T ss_pred CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCC
Confidence 999999999999999999875433221 1256678999998 77999999999
Q ss_pred eEEEEECCCcce
Q psy4393 219 TLKLWDSKVVTP 230 (247)
Q Consensus 219 ~i~vwd~~~~~~ 230 (247)
.|++||.+...+
T Consensus 252 ~i~~wd~~~~~~ 263 (366)
T 3k26_A 252 AIVCWKPGKMED 263 (366)
T ss_dssp EEEEEEESSTTC
T ss_pred EEEEEeCCCccc
Confidence 999999877643
No 78
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-32 Score=238.96 Aligned_cols=208 Identities=24% Similarity=0.378 Sum_probs=179.5
Q ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC--CCeEEEEEecccCCeEEEEECCC--CCEEEEEcCCCeEEEE
Q psy4393 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTLKIW 96 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~ 96 (247)
..+.+|.+.|++++|+|++++|++|+.||.|++|+.. ++.....+.+|..+|.+++|+|+ ++.+++++.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4567999999999999999999999999999999987 44566678889999999999988 9999999999999999
Q ss_pred ECCCce--EEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCe--EEEeecCCCCCeEEEEECC-------
Q psy4393 97 ELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFNR------- 163 (247)
Q Consensus 97 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~------- 163 (247)
|+.+++ ....+..|...|.++.|+|+ +..+++|+.||.|++||++.+. ....+..|...+.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 66777889999999999999 9999999999999999998773 3445668889999999999
Q ss_pred ------CCCEEEEecCCCeEEEEeCCCcee---eeeeccCCCCCeEEEEECCC---CCEEEEEEcCCeEEEEECCCc
Q psy4393 164 ------DGSLIVSSSYDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPN---GKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 164 ------~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~ 228 (247)
++.++++|+.||.|++||++++.. .......+..+|.+++|+|+ +++|++++.||.|++||.+..
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 588999999999999999987632 22223456778999999999 899999999999999998875
No 79
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-32 Score=223.64 Aligned_cols=212 Identities=17% Similarity=0.301 Sum_probs=179.2
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC---CCeEEEEEec------------ccCCeEEEE--ECCCCCEEEEE
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISG------------HKLGISDVA--WSSDSRLLVSG 87 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~ 87 (247)
+|...|.+++|+|++++|++++.||.|++||+. .++....... +...+.++. +++++..++++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 589999999999999999999999999999984 4443333222 234455555 56789999999
Q ss_pred cCCCeEEEEECCCceEEEEEec--CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCCCeEEEEEC--
Q psy4393 88 SDDKTLKIWELSSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFN-- 162 (247)
Q Consensus 88 ~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~-- 162 (247)
+.|+.|++||+++++.+..+.. |...|.+++|+|++.++++|+.||.|++||+++++.+..+. .|..+|.+++++
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 9999999999999999988887 78899999999999999999999999999999999888876 677789999665
Q ss_pred --CCCCEEEEecCCCeEEEEeCCCceeeeeeccC-------------------------CCCCeEEEEECCCCCEEEEEE
Q psy4393 163 --RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------------------------DNPPVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 163 --~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------------------~~~~v~~~~~s~~~~~l~~~~ 215 (247)
|++.+|++++.||.|++||+++++....+... +...|.+++|+ ++++|++++
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~ 347 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE 347 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence 46779999999999999999998876665422 33457889999 779999999
Q ss_pred cCCeEEEEECCCcceEEEEccC
Q psy4393 216 LDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
.||.|++||.+..+....+..+
T Consensus 348 ~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 348 ATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp GGTEEEEEETTCGGGCEEEECC
T ss_pred CCCeEEEEECCCcccceEEecc
Confidence 9999999999998877776654
No 80
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.3e-31 Score=226.52 Aligned_cols=216 Identities=22% Similarity=0.347 Sum_probs=194.6
Q ss_pred EEEEEecCCCC-eEEEEECC--CCCEEEEEeCCCeEEEEecCCC--------eEEEEEecccCCeEEEEECCCCCEEEEE
Q psy4393 19 LKFTLAGHTKA-VSSVKFSP--NGEWLASSSADKLIKIWGAYDG--------KFEKTISGHKLGISDVAWSSDSRLLVSG 87 (247)
Q Consensus 19 ~~~~~~~h~~~-v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 87 (247)
....+.+|... |.+++|+| ++++|++++.||.|++|+..++ .....+..|..+|.+++|+|++++++++
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 134 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 134 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe
Confidence 45667899999 99999999 9999999999999999999744 5566777889999999999999999999
Q ss_pred cCC----CeEEEEECCCceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEeecCCCC---CeEEE
Q psy4393 88 SDD----KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSD---PVSAV 159 (247)
Q Consensus 88 ~~d----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~i~~~ 159 (247)
+.+ +.|.+|| .++....+..|...+.++.|+|++. .+++++.|+.|++||+++++.+..+..|.. .+.++
T Consensus 135 ~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 212 (615)
T 1pgu_A 135 GEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV 212 (615)
T ss_dssp ECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred ccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEE
Confidence 887 6888888 5667788889999999999999998 899999999999999999999999999988 99999
Q ss_pred EECCC-CCEEEEecCCCeEEEEeCCCceeeeeecc---CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393 160 HFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 160 ~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 235 (247)
+|+|+ +++|++++.||.|++||+.+++.+..+.. .+...|..++|+ ++++|++++.||.|++||.+..+++..+.
T Consensus 213 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 99999 99999999999999999999988777634 667889999999 99999999999999999999888777766
Q ss_pred cC
Q psy4393 236 TP 237 (247)
Q Consensus 236 ~~ 237 (247)
.+
T Consensus 292 ~~ 293 (615)
T 1pgu_A 292 LD 293 (615)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-31 Score=213.60 Aligned_cols=204 Identities=25% Similarity=0.425 Sum_probs=182.3
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC-CceE
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS-SGKC 103 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~ 103 (247)
.|...|.+++|+|++++|++|+.||.|++||..+++....+.+|...|.+++| ++..+++++.|+.|++||++ ....
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 37899999999999999999999999999999999999999999999999999 56799999999999999998 4566
Q ss_pred EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC-EEEEec--CCCeEEEE
Q psy4393 104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSS--YDGLCRIW 180 (247)
Q Consensus 104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~v~ 180 (247)
...+..|...|.++.|+|++.++++++.|+.|++||+++++.+..+..|...+.+++|+|++. ++++++ .|+.|++|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 778889999999999999999999999999999999999999888989999999999999765 566654 79999999
Q ss_pred eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE--cCCeEEEEECCCcceEE
Q psy4393 181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT--LDNTLKLWDSKVVTPAI 232 (247)
Q Consensus 181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~ 232 (247)
|+.+++....+. ....+..++|+|++++|++++ .||.|++||.+......
T Consensus 290 d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 290 NAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp ETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred ECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence 999988777663 346799999999999999954 89999999998854433
No 82
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6e-31 Score=217.47 Aligned_cols=216 Identities=27% Similarity=0.556 Sum_probs=189.3
Q ss_pred EEEEEecCCCCe-EEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 19 LKFTLAGHTKAV-SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 19 ~~~~~~~h~~~v-~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
...++.+|...| .++.+ ++++|++|+.||.|++||..+++....+.+|...|.+++|+|++ .+++++.|+.|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 456788998885 55555 57899999999999999999999999999999999999999988 899999999999999
Q ss_pred CCCceEEEEEecCCccEEEEEEc--CCCCEEEEeeCCCCEEEEECCCCeE-----------------------EEeecCC
Q psy4393 98 LSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWDVRTGKC-----------------------LKTLPAH 152 (247)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~d~~~~~~-----------------------~~~~~~~ 152 (247)
+.+++....+.+|...|.+++|+ +++.++++++.|+.|++||++++.. +..+..|
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 99999999999999999999998 5778999999999999999987652 3456677
Q ss_pred CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232 (247)
Q Consensus 153 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 232 (247)
...+.++ ++++.++++++.||.|++||+.+++.+..+. .+...+.+++|+|++++|++++.||.|++||.++++++.
T Consensus 270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 7777766 5778999999999999999999988777654 456789999999999999999999999999999999888
Q ss_pred EEccCCcc
Q psy4393 233 ICSTPLNL 240 (247)
Q Consensus 233 ~~~~~~~~ 240 (247)
.+..+...
T Consensus 347 ~~~~h~~~ 354 (464)
T 3v7d_B 347 TLQGHTAL 354 (464)
T ss_dssp EECCCSSC
T ss_pred EEeCCCCc
Confidence 87766553
No 83
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-31 Score=216.32 Aligned_cols=212 Identities=19% Similarity=0.274 Sum_probs=176.4
Q ss_pred EEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecc---cCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393 21 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH---KLGISDVAWSSDSRLLVSGSDDKTLKIW 96 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 96 (247)
+...+|...|.+++|+| ++++|++++.|+.|++||... .....+..+ ...|.+++|+|+++.+++++.|+.|++|
T Consensus 112 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 112 IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL 190 (383)
T ss_dssp ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence 33347999999999999 789999999999999999975 444445433 3679999999999999999999999999
Q ss_pred ECCCceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCC----CeEEEeecCCCCCeEEEEECC-CCCEEEE
Q psy4393 97 ELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRT----GKCLKTLPAHSDPVSAVHFNR-DGSLIVS 170 (247)
Q Consensus 97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 170 (247)
|+ +++.+..+..|...|.+++|+|++. ++++++.|+.|++||+++ +..+..+ .|...+.+++|+| ++.+|++
T Consensus 191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~ 268 (383)
T 3ei3_B 191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT 268 (383)
T ss_dssp ET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE
T ss_pred EC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE
Confidence 99 5677888899999999999999998 999999999999999997 5555555 5889999999999 9999999
Q ss_pred ecCCCeEEEEeCCCceeeeeeccC------CC----------CCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393 171 SSYDGLCRIWDTASGQCLKTLIDD------DN----------PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 171 ~~~dg~i~v~d~~~~~~~~~~~~~------~~----------~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 234 (247)
++.|+.|++||+++++....+..+ +. ..+..++|+|++++ +++.||.|++||.++.+++..+
T Consensus 269 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l 346 (383)
T 3ei3_B 269 TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL 346 (383)
T ss_dssp EESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred EcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence 999999999999987655444321 11 23444666777766 6678999999999999888777
Q ss_pred ccC
Q psy4393 235 STP 237 (247)
Q Consensus 235 ~~~ 237 (247)
..+
T Consensus 347 ~~~ 349 (383)
T 3ei3_B 347 RDP 349 (383)
T ss_dssp CBT
T ss_pred cCC
Confidence 653
No 84
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.4e-31 Score=208.67 Aligned_cols=196 Identities=17% Similarity=0.205 Sum_probs=153.1
Q ss_pred CCeEEEEECCC----CCEEEEEeC--------------------CCeEEEEec-CCCeEEEEEecccCCeEEEEECC---
Q psy4393 28 KAVSSVKFSPN----GEWLASSSA--------------------DKLIKIWGA-YDGKFEKTISGHKLGISDVAWSS--- 79 (247)
Q Consensus 28 ~~v~~~~~s~~----~~~l~~~~~--------------------dg~v~iw~~-~~~~~~~~~~~~~~~v~~~~~~~--- 79 (247)
+.|.+++|+|+ ++.++.++. |+.|++|++ .+++....+..|...+..++|+|
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG 191 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence 35667777888 777776553 888899998 45777778888888888889988
Q ss_pred CCCEEEEEcCCCeEEEEECCCceEEEEEecCCc---cEEEEEEcCCCCEE------------EEeeCCCCEEEEECCCCe
Q psy4393 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSN---YVFCCNFNPQSNLI------------VSGSFDESVRIWDVRTGK 144 (247)
Q Consensus 80 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l------------~~~~~d~~i~v~d~~~~~ 144 (247)
++..|++++.|++|++||++++++++.+.++.. .+.+++|+|++.++ ++|+.|+.+++||..+++
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 779999999999999999999999999986543 56677899999876 567889999999999998
Q ss_pred EEEee-----cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCe
Q psy4393 145 CLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 219 (247)
Q Consensus 145 ~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 219 (247)
.+..+ ..|...+.+..+ ++.++++++.|++|++||+.+++.+.++..+....+..++|+|||++|++|+.|++
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 77654 245444443333 47789999999999999999999888876544445667899999999999999999
Q ss_pred EEEEEC
Q psy4393 220 LKLWDS 225 (247)
Q Consensus 220 i~vwd~ 225 (247)
|+|||.
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999985
No 85
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-30 Score=214.97 Aligned_cols=211 Identities=27% Similarity=0.560 Sum_probs=186.2
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEEC--CCCCEEEEEcCCCeEEEE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--SDSRLLVSGSDDKTLKIW 96 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~ 96 (247)
...++.+|.+.|.+++|+|++ +|++|+.||.|++||..+++....+.+|...|.+++|+ +++..+++++.|+.|++|
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 456677899999999999988 89999999999999999999999999999999999998 578899999999999999
Q ss_pred ECCCceE-----------------------EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC
Q psy4393 97 ELSSGKC-----------------------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS 153 (247)
Q Consensus 97 d~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 153 (247)
|+.++.. ...+.+|...+.++ +++++.+++++.|+.|++||+++++.+..+..|.
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 9987642 44566777777665 6778999999999999999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393 154 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII 233 (247)
Q Consensus 154 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 233 (247)
..+.+++|+|++.++++|+.||.|++||+++++.+..+. .+...+.+++|+ +++|++++.||.|++||.++......
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~ 387 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS 387 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence 999999999999999999999999999999998877664 456789999997 58999999999999999998776555
Q ss_pred Ec
Q psy4393 234 CS 235 (247)
Q Consensus 234 ~~ 235 (247)
..
T Consensus 388 ~~ 389 (464)
T 3v7d_B 388 YH 389 (464)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-31 Score=214.58 Aligned_cols=211 Identities=26% Similarity=0.405 Sum_probs=180.7
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC-CCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
...++.+|...|.+++| ++++|++++.||.|++||.. .......+.+|...|.+++|+|+++.+++++.|+.|++||
T Consensus 168 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 245 (401)
T 4aez_A 168 KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245 (401)
T ss_dssp EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence 44566789999999999 56799999999999999998 4566778888999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCccEEEEEEcCCC-CEEEEee--CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEE--ec
Q psy4393 98 LSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SS 172 (247)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~ 172 (247)
+.+++....+..|...+.+++|+|++ .++++++ .|+.|++||+++++.+..+. +...+.+++|+|++..+++ |+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~ 324 (401)
T 4aez_A 246 ARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGF 324 (401)
T ss_dssp TTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECT
T ss_pred CCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeec
Confidence 99998888888899999999999966 5666654 79999999999999888776 4578999999999999998 55
Q ss_pred CCCeEEEEeCCCceeeeee-ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393 173 YDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232 (247)
Q Consensus 173 ~dg~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 232 (247)
.||.|++||+.+++..... ...+...|..++|+|++++|++++.||.|++||....+.+.
T Consensus 325 ~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 325 PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp TTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred CCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 8999999999887654443 33566789999999999999999999999999998876543
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-31 Score=220.31 Aligned_cols=206 Identities=21% Similarity=0.384 Sum_probs=177.4
Q ss_pred EEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCC----------CeEEEEEecccCCeEEEEECCCCC-EEEEEc
Q psy4393 21 FTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD----------GKFEKTISGHKLGISDVAWSSDSR-LLVSGS 88 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 88 (247)
.....|.+.|++++|+|+ +.+|++++.+|.|++|+... ......+.+|...+.+++|+|++. .|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445579999999999997 67899999999999999875 456677888999999999999988 999999
Q ss_pred CCCeEEEEECCCceE-------EEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCC---eEEEeecCCCCCeE
Q psy4393 89 DDKTLKIWELSSGKC-------LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTG---KCLKTLPAHSDPVS 157 (247)
Q Consensus 89 ~d~~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~ 157 (247)
.||.|++|++.++.. ...+..|...|.+++|+| ++.++++++.|+.|++||++++ ..+..+..|...++
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987321 345668888999999999 7789999999999999999987 46667778999999
Q ss_pred EEEECCCCC-EEEEecCCCeEEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCC
Q psy4393 158 AVHFNRDGS-LIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKV 227 (247)
Q Consensus 158 ~~~~~~~~~-~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~ 227 (247)
+++|+|++. ++++|+.||.|++||+++. +.+..+ ..+...|.+++|+|+++ +|++++.||.|+|||.+.
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 999999987 7889999999999999984 334433 34567899999999995 688999999999999987
No 88
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.6e-32 Score=225.50 Aligned_cols=210 Identities=21% Similarity=0.376 Sum_probs=164.8
Q ss_pred EEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecc--cCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393 20 KFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLLVSGSDDKTLKIW 96 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 96 (247)
...+.+|.+.|++++|+| ++++|++|+.||.|++||+..+........+ ...+.+++|+|++++|++++.||.|++|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence 345568999999999998 6889999999999999999765544333332 3357889999999999999999999999
Q ss_pred ECCCceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEe---ecCCCCCeEEEEECCCCCEEEEec
Q psy4393 97 ELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSS 172 (247)
Q Consensus 97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~ 172 (247)
|++. +.+..+.+|...|.+++|+|++. ++++++.|+.|++||+++.+.... ...|..+|.+++|+|++.+|++++
T Consensus 237 d~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 237 NMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp ESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred ccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence 9864 55667888999999999999875 788999999999999988664333 356888999999999999999999
Q ss_pred CCCeEEEEeCCCceeeeee------------------------------------------------------------c
Q psy4393 173 YDGLCRIWDTASGQCLKTL------------------------------------------------------------I 192 (247)
Q Consensus 173 ~dg~i~v~d~~~~~~~~~~------------------------------------------------------------~ 192 (247)
.||.|++||+.+++....+ .
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~ 395 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY 395 (435)
T ss_dssp SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 9999999998764321110 0
Q ss_pred cCCCCCeEEE-EECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393 193 DDDNPPVSFV-KFSPNGKYILAATLDNTLKLWDSKVVTPA 231 (247)
Q Consensus 193 ~~~~~~v~~~-~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 231 (247)
..+...|.++ +|+|+|++|++|+ |+.|+|||.+++++.
T Consensus 396 ~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 396 DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 1122234444 6999999998876 889999999887664
No 89
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=222.04 Aligned_cols=211 Identities=21% Similarity=0.363 Sum_probs=184.4
Q ss_pred EEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCe------EEEE---EecccCCeEEEEECCC-CCEEEEE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGK------FEKT---ISGHKLGISDVAWSSD-SRLLVSG 87 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~------~~~~---~~~~~~~v~~~~~~~~-~~~l~~~ 87 (247)
....+.+|...|.+++|+|+ +++|++++.||.|++||..++. .... ...|...|.+++|+|+ +..++++
T Consensus 105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence 45667789999999999998 8899999999999999998765 2222 3567788999999998 7899999
Q ss_pred cCCCeEEEEECCCceEEEEEecC------CccEEEEEEcCCC-CEEEEeeCCC---CEEEEECCCC-eEEEeec-CCCCC
Q psy4393 88 SDDKTLKIWELSSGKCLKTLKGH------SNYVFCCNFNPQS-NLIVSGSFDE---SVRIWDVRTG-KCLKTLP-AHSDP 155 (247)
Q Consensus 88 ~~d~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~i~v~d~~~~-~~~~~~~-~~~~~ 155 (247)
+.|+.|++||+++++.+..+..+ ...+.+++|+|++ .++++++.++ .|++||++++ ..+..+. .|...
T Consensus 185 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 264 (416)
T 2pm9_A 185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG 264 (416)
T ss_dssp SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc
Confidence 99999999999999888888766 6789999999997 6899999998 9999999986 5666777 89999
Q ss_pred eEEEEECC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCCcce
Q psy4393 156 VSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 156 i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
+.+++|+| ++.+|++++.||.|++||+.+++.+..+. .+...+..++|+|++ ++|++++.||.|++||.+....
T Consensus 265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 99999999 89999999999999999999988777654 445678899999999 8999999999999999987653
No 90
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.8e-31 Score=212.93 Aligned_cols=209 Identities=23% Similarity=0.458 Sum_probs=175.2
Q ss_pred cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCC---CCEEEEEcCCCeEEEEECCC
Q psy4393 25 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SRLLVSGSDDKTLKIWELSS 100 (247)
Q Consensus 25 ~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~ 100 (247)
+|...|.+++|+| ++.+|++++.||.|++||..+++....+. +...+.++.|+|. +..+++++.++.|++||+.+
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 4999999999999 77899999999999999999888777665 5677999999984 45999999999999999999
Q ss_pred ceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCe-EEEee---------------cCCCCCeEEEEECC
Q psy4393 101 GKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGK-CLKTL---------------PAHSDPVSAVHFNR 163 (247)
Q Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~-~~~~~---------------~~~~~~i~~~~~~~ 163 (247)
++....+..|...+.+++|+|++. ++++++.||.|++||++.+. .+..+ ..|...|.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 988888999999999999999988 68999999999999998765 23333 46778999999999
Q ss_pred CCCEEEEecCCCeEEEEeCCCceeeee----------------------------------------------eccCCCC
Q psy4393 164 DGSLIVSSSYDGLCRIWDTASGQCLKT----------------------------------------------LIDDDNP 197 (247)
Q Consensus 164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~----------------------------------------------~~~~~~~ 197 (247)
++.+|++++.||.+++||+.+++.... ....+..
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence 999999999999999999987543211 1133567
Q ss_pred CeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393 198 PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 198 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 234 (247)
.|.+++|+|++++|++++.||.|++||.+..+++...
T Consensus 336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 8999999999999999999999999999988776543
No 91
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.7e-31 Score=217.95 Aligned_cols=210 Identities=28% Similarity=0.498 Sum_probs=179.1
Q ss_pred eEEEEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeE-------EEEEecccCCeEEEEECC-CCCEEEEEc
Q psy4393 18 VLKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKF-------EKTISGHKLGISDVAWSS-DSRLLVSGS 88 (247)
Q Consensus 18 ~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 88 (247)
....++.+|...|.+++|+|++. +|++|+.||.|++|++..+.. ...+.+|...|.+++|+| ++..+++++
T Consensus 172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~ 251 (430)
T 2xyi_A 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 251 (430)
T ss_dssp CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence 34466778999999999999998 999999999999999976321 345667888999999999 678899999
Q ss_pred CCCeEEEEECCCc---eEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCC-CeEEEeecCCCCCeEEEEECC
Q psy4393 89 DDKTLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNR 163 (247)
Q Consensus 89 ~d~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~ 163 (247)
.|+.|++||++++ +....+..|...+.+++|+|++. ++++|+.||.|++||++. ...+..+..|...|.+++|+|
T Consensus 252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence 9999999999876 46667778999999999999887 789999999999999997 556778888999999999999
Q ss_pred CCC-EEEEecCCCeEEEEeCCCc--------------eeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCC
Q psy4393 164 DGS-LIVSSSYDGLCRIWDTASG--------------QCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKV 227 (247)
Q Consensus 164 ~~~-~l~~~~~dg~i~v~d~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~ 227 (247)
++. +|++++.|+.|++||+... +.+. ....+...|..++|+|+++ +|++++.||.|+||+...
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF-IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEE-ECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEE-EcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 985 7899999999999999862 2222 2334566799999999999 899999999999999865
Q ss_pred c
Q psy4393 228 V 228 (247)
Q Consensus 228 ~ 228 (247)
.
T Consensus 411 ~ 411 (430)
T 2xyi_A 411 N 411 (430)
T ss_dssp H
T ss_pred c
Confidence 3
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.7e-32 Score=214.95 Aligned_cols=209 Identities=18% Similarity=0.315 Sum_probs=172.2
Q ss_pred EEEEecCCCCeEEEE------ECCCCCEEEEEeCCCeEEEEecCCCe-EEEEEecccC----CeEEEE----ECCCCCEE
Q psy4393 20 KFTLAGHTKAVSSVK------FSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKL----GISDVA----WSSDSRLL 84 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~------~s~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l 84 (247)
...+.+|...|.++. |+|++++|++++.||.|++||...+. ....+..+.. .+.++. |+|+++.+
T Consensus 104 ~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 183 (357)
T 3i2n_A 104 VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVV 183 (357)
T ss_dssp SEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEE
T ss_pred EEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEE
Confidence 345668999999995 57899999999999999999998775 5566655443 688888 78999999
Q ss_pred EEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcC---CCCEEEEeeCCCCEEEEECCCCeEEEeec-----CCCCCe
Q psy4393 85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVRTGKCLKTLP-----AHSDPV 156 (247)
Q Consensus 85 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~i 156 (247)
++++.|+.|++||+++++... ...+...+.+++|+| ++..+++++.|+.|++||+++++....+. .|...|
T Consensus 184 ~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v 262 (357)
T 3i2n_A 184 CAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTV 262 (357)
T ss_dssp EEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCE
T ss_pred EEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCE
Confidence 999999999999999887644 455778899999999 89999999999999999998776544443 899999
Q ss_pred EEEEECCCCC-EEEEecCCCeEEEEeCCCce-------------------eeeeeccCCCCCeEEEEECCCCCEEE-EEE
Q psy4393 157 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQ-------------------CLKTLIDDDNPPVSFVKFSPNGKYIL-AAT 215 (247)
Q Consensus 157 ~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~ 215 (247)
.+++|+|++. ++++++.||.|++||++.+. .+.. ...+..+|.+++|+|++++|+ +++
T Consensus 263 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~s~~ 341 (357)
T 3i2n_A 263 WQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN-VTLSTQPISSLDWSPDKRGLCVCSS 341 (357)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE-EECCSSCEEEEEECSSSTTEEEEEE
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec-cccCCCCeeEEEEcCCCCeEEEEec
Confidence 9999999998 89999999999999987543 2222 234567899999999999998 799
Q ss_pred cCCeEEEEECCCcce
Q psy4393 216 LDNTLKLWDSKVVTP 230 (247)
Q Consensus 216 ~dg~i~vwd~~~~~~ 230 (247)
.||.|++||....+.
T Consensus 342 ~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 342 FDQTVRVLIVTKLNK 356 (357)
T ss_dssp TTSEEEEEEECC---
T ss_pred CCCcEEEEECCCccc
Confidence 999999999876543
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-31 Score=204.92 Aligned_cols=210 Identities=26% Similarity=0.390 Sum_probs=178.9
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEEC
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~ 98 (247)
...+.+|...|.++.| +++++++++.||.|++|| .+.....+..|...+.++.|.| +++.+++++.|+.+++||.
T Consensus 97 ~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 172 (313)
T 3odt_A 97 LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172 (313)
T ss_dssp -CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec
Confidence 3456789999999999 678999999999999999 6677778888999999999988 8999999999999999993
Q ss_pred CCceEEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393 99 SSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177 (247)
Q Consensus 99 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 177 (247)
.+....+.. +...+.++.|+|++. +++++.|+.|++||+++++.+..+..|..++.+++|+|++ .+++++.||.|
T Consensus 173 --~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v 248 (313)
T 3odt_A 173 --DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTV 248 (313)
T ss_dssp --TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEE
T ss_pred --CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEE
Confidence 455566666 788899999999988 9999999999999999999999999999999999999999 58899999999
Q ss_pred EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
++||+.+++....+. .+..++..++|+|+++ +++++.||.|++||.+............+
T Consensus 249 ~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 308 (313)
T 3odt_A 249 RIWSKENGSLKQVIT-LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIKGE 308 (313)
T ss_dssp EEECTTTCCEEEEEE-CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-------
T ss_pred EEEECCCCceeEEEe-ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhhhhh
Confidence 999999998777664 3456899999999998 66799999999999998776555444333
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-31 Score=219.09 Aligned_cols=207 Identities=17% Similarity=0.153 Sum_probs=177.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe---EEEEEec-------------------------------------
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISG------------------------------------- 67 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~------------------------------------- 67 (247)
.++.+++|+|+|++|+++ .++.|++||..+++ ....+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999976655 57899999998887 4444332
Q ss_pred -----------------ccCCeEEEEECCCCCEE-EEEcCCCeEEEEECC--CceEEEEEe--cCCccEEEEEEcCCCCE
Q psy4393 68 -----------------HKLGISDVAWSSDSRLL-VSGSDDKTLKIWELS--SGKCLKTLK--GHSNYVFCCNFNPQSNL 125 (247)
Q Consensus 68 -----------------~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~ 125 (247)
|...|.+++|+|++++| ++++.|+.|++||+. +++....+. .+...+.+++|+|++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 22269999999999996 889999999999998 777777765 55678999999999999
Q ss_pred EEEeeCCCCEEEEECCCCeEEE----eecCCCCCeEEEEECCC---CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCC
Q psy4393 126 IVSGSFDESVRIWDVRTGKCLK----TLPAHSDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198 (247)
Q Consensus 126 l~~~~~d~~i~v~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~ 198 (247)
+++++.++.+++|++.++.... .+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++.+..+...+...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998876543 66778899999999999 9999999999999999999988777766677788
Q ss_pred eEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393 199 VSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 199 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 236 (247)
|.+++|+ ++++|++++.|+.|++||.++++++..+..
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 9999999 999999999999999999999887776653
No 95
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.5e-30 Score=208.39 Aligned_cols=203 Identities=16% Similarity=0.203 Sum_probs=162.8
Q ss_pred EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCC
Q psy4393 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSS 100 (247)
Q Consensus 22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~ 100 (247)
+...|...|.+++|+|+|++|++|+.++ +++|+........... ...+..+.+.++++.+ ++++.++.|++||..+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 4567999999999999999999987665 7899987765544332 2357778888888877 5677889999999999
Q ss_pred ceEEEEEecCCccEEEEEEcCCC-----------------------------------CEEEE--eeCCCCEEEEECCCC
Q psy4393 101 GKCLKTLKGHSNYVFCCNFNPQS-----------------------------------NLIVS--GSFDESVRIWDVRTG 143 (247)
Q Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~--~~~d~~i~v~d~~~~ 143 (247)
++.+..+. +...+.++.++++. ..+++ |+.+|.|++||++++
T Consensus 91 ~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~ 169 (355)
T 3vu4_A 91 KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSS 169 (355)
T ss_dssp TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-
T ss_pred CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCC
Confidence 98887776 44567777776542 23444 678899999999876
Q ss_pred e----------------EEEeecCCCCCeEEEEECCCCCEEEEecCCCe-EEEEeCCCceeeeeeccC-CCCCeEEEEEC
Q psy4393 144 K----------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD-DNPPVSFVKFS 205 (247)
Q Consensus 144 ~----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~-~~~~v~~~~~s 205 (247)
. .+..+..|..+|.+++|+|++.+|++|+.|+. |++||+++++.+..+... +...|.+++|+
T Consensus 170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s 249 (355)
T 3vu4_A 170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS 249 (355)
T ss_dssp -----------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC
T ss_pred CccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC
Confidence 5 16778899999999999999999999999998 999999999988887633 77889999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCc
Q psy4393 206 PNGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 206 ~~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
|++++|++++.|+.|++||.+..
T Consensus 250 ~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 250 TDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp TTSCEEEEEETTCEEEEEESSCC
T ss_pred CCCCEEEEEECCCEEEEEEccCC
Confidence 99999999999999999998764
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2e-31 Score=211.61 Aligned_cols=209 Identities=9% Similarity=0.020 Sum_probs=179.6
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe---EEEEEecccCCeEEEEECCCCC-EEEEEcCCCeEEEEEC-
Q psy4393 24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWEL- 98 (247)
Q Consensus 24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~- 98 (247)
.+|.+.|.+++|+|++++|++++.||.|++|+...+. ....+..|...|.+++|+|+++ .+++++.|+.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 4799999999999999999999999999999997765 2344557888999999999999 9999999999999999
Q ss_pred CCceEEEEEec--CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC---------CeEEEeecCCCCCeEEEEECCCCCE
Q psy4393 99 SSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT---------GKCLKTLPAHSDPVSAVHFNRDGSL 167 (247)
Q Consensus 99 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~ 167 (247)
.+++. ..+.. |...|.+++|+| +..+++++.|+.|++||+++ ++.+..+. |...+.+++|+|++
T Consensus 88 ~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-- 162 (342)
T 1yfq_A 88 GSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-- 162 (342)
T ss_dssp SSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--
T ss_pred cCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--
Confidence 77754 66777 899999999999 99999999999999999987 66666665 78899999999987
Q ss_pred EEEecCCCeEEEEeCCC-cee-eeeeccCCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCc------ceEEEEccC
Q psy4393 168 IVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVV------TPAIICSTP 237 (247)
Q Consensus 168 l~~~~~dg~i~v~d~~~-~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~ 237 (247)
+++++.++.|++||+++ +.. .......+...+.+++|+| +++++++++.||.|++||.+.. .+...+..+
T Consensus 163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 88999999999999987 543 2333445567899999999 9999999999999999999876 555555554
No 97
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-31 Score=230.99 Aligned_cols=210 Identities=28% Similarity=0.392 Sum_probs=181.8
Q ss_pred eEEEEEecCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCC--CCEEEEEcCCC
Q psy4393 18 VLKFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDK 91 (247)
Q Consensus 18 ~~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~ 91 (247)
....++.+|.++|.+++|+|+ +++|++|+.||.|++||..++. ....+..|...|.+++|+|+ ++.+++++.||
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 344567789999999999988 9999999999999999998876 55667788999999999999 99999999999
Q ss_pred eEEEEECCCce--EEEEEecCCccEEEEEEcC-------------CCCEEEEeeCCCCEEEEECCCC----eEEEeecCC
Q psy4393 92 TLKIWELSSGK--CLKTLKGHSNYVFCCNFNP-------------QSNLIVSGSFDESVRIWDVRTG----KCLKTLPAH 152 (247)
Q Consensus 92 ~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~ 152 (247)
.|++||+.++. ....+..|...+.++.|+| ++..+++|+.||.|++||++++ .....+..|
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 99999998763 3445678889999999999 5899999999999999999877 456677889
Q ss_pred CCCeEEEEECCC---CCEEEEecCCCeEEEEeCCCceee--eee--ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393 153 SDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCL--KTL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225 (247)
Q Consensus 153 ~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~--~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 225 (247)
..+|.+++|+|+ +.++++++.||.|++||+.+++.. ... ...+...+.+++|+|++++|++++.||.|++||.
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 999999999999 899999999999999999876421 111 2235567889999999999999999999999998
Q ss_pred CC
Q psy4393 226 KV 227 (247)
Q Consensus 226 ~~ 227 (247)
+.
T Consensus 284 ~~ 285 (753)
T 3jro_A 284 NL 285 (753)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.3e-30 Score=200.88 Aligned_cols=209 Identities=23% Similarity=0.469 Sum_probs=171.6
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe---------------------------------
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------------------------------- 66 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--------------------------------- 66 (247)
.+.+.+|...|++++|+|++++|++|+.||.|++|+..+++....+.
T Consensus 60 ~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 60 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCC
Confidence 34456788899999999999999999999999999988776544332
Q ss_pred --------cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE----EEEEecCCccEEEEEEcCCCCE---EEEeeC
Q psy4393 67 --------GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGHSNYVFCCNFNPQSNL---IVSGSF 131 (247)
Q Consensus 67 --------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~---l~~~~~ 131 (247)
+|...+..+.+.++++.+++++.|+.|++||+.+++. ......+...+..+.+.|.+.. +++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence 3455677788899999999999999999999987642 3344566778899999987653 346678
Q ss_pred CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe--cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC
Q psy4393 132 DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 209 (247)
Q Consensus 132 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 209 (247)
++.|++||.+......... +...+..+.++|++..++++ +.|+.|++||+.+++.+..+. .|...|.+++|+|+++
T Consensus 220 ~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~ 297 (318)
T 4ggc_A 220 DRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGA 297 (318)
T ss_dssp TCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS
T ss_pred CCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC
Confidence 8999999999887665544 45678999999999887664 479999999999999887764 5667899999999999
Q ss_pred EEEEEEcCCeEEEEECCCcce
Q psy4393 210 YILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 210 ~l~~~~~dg~i~vwd~~~~~~ 230 (247)
+|++|+.||+|+|||+.+.+|
T Consensus 298 ~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp CEEEEETTTEEEEECCSCCCC
T ss_pred EEEEEecCCeEEEEECCCCCC
Confidence 999999999999999988765
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.7e-31 Score=208.95 Aligned_cols=212 Identities=14% Similarity=0.138 Sum_probs=180.1
Q ss_pred EEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEec-CCCeEEEEEec--ccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393 21 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGA-YDGKFEKTISG--HKLGISDVAWSSDSRLLVSGSDDKTLKIW 96 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 96 (247)
..+.+|...|.+++|+|+++ +|++++.||.|++|+. .++.. ..+.+ |...|.+++|+| ++.+++++.|+.|++|
T Consensus 50 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iw 127 (342)
T 1yfq_A 50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVI 127 (342)
T ss_dssp EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEE
T ss_pred eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEE
Confidence 33458999999999999999 9999999999999999 77654 66677 889999999999 9999999999999999
Q ss_pred ECCC---------ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC-Ce--EEEeecCCCCCeEEEEECC-
Q psy4393 97 ELSS---------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GK--CLKTLPAHSDPVSAVHFNR- 163 (247)
Q Consensus 97 d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~--~~~~~~~~~~~i~~~~~~~- 163 (247)
|+.+ ++.+..+. +...+.+++|+|++ +++++.++.|++||++. +. .......+...+.+++|+|
T Consensus 128 d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 128 DPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp CHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG
T ss_pred cccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCC
Confidence 9987 65555555 77889999999987 99999999999999998 44 2334456778999999999
Q ss_pred CCCEEEEecCCCeEEEEeCCCc------eeeeeeccCC--------CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 164 DGSLIVSSSYDGLCRIWDTASG------QCLKTLIDDD--------NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 164 ~~~~l~~~~~dg~i~v~d~~~~------~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
++.++++++.||.+++|++... +....+..+. ...+.+++|+|++++|++++.||.|++||.++.+
T Consensus 205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred CCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 9999999999999999999876 4444443221 2389999999999999999999999999999998
Q ss_pred eEEEEccC
Q psy4393 230 PAIICSTP 237 (247)
Q Consensus 230 ~~~~~~~~ 237 (247)
++..+..+
T Consensus 285 ~~~~~~~~ 292 (342)
T 1yfq_A 285 KIKNFAKF 292 (342)
T ss_dssp EEEECCCC
T ss_pred Hhhhhhcc
Confidence 88777665
No 100
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-30 Score=220.69 Aligned_cols=206 Identities=16% Similarity=0.245 Sum_probs=186.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC----eEEEEEecccCC-eEEEEECC--CCCEEEEEcCCCeEEEEE
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLG-ISDVAWSS--DSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~d~~i~v~d 97 (247)
.|.+.|.+++|+|+|++|++++ ++.|++|+..++ +....+.+|... |.+++|+| ++++|++++.|+.|++||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 5889999999999999999987 889999999988 788899999999 99999999 999999999999999999
Q ss_pred CCCc--------eEEEEEecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCCeEEEeecCCCCCeEEEEECCCC
Q psy4393 98 LSSG--------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165 (247)
Q Consensus 98 ~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 165 (247)
+.++ .....+..+...+.+++|+|+++++++++.+ +.|++|| .++.+..+..|...|.+++|+|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR 172 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC
Confidence 9754 5667778889999999999999999999887 6788888 567788889999999999999999
Q ss_pred C-EEEEecCCCeEEEEeCCCceeeeeeccCCCC---CeEEEEECCC-CCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393 166 S-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFSPN-GKYILAATLDNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 166 ~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~ 234 (247)
. .+++++.|+.+++||+.+++....+.. +.. .+.+++|+|+ +++|++++.||.|++||.++.+++..+
T Consensus 173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 173 PMRSMTVGDDGSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred CcEEEEEeCCCcEEEEeCCCcceeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 8 899999999999999999887776543 445 7999999999 999999999999999999998888777
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.3e-30 Score=211.90 Aligned_cols=201 Identities=25% Similarity=0.458 Sum_probs=174.0
Q ss_pred CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCe----EEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEECCCc-
Q psy4393 29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG- 101 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~- 101 (247)
....++++|+...++ +++.+|.|++|+..... ....+.+|...|.+++|+| ++++|++++.|+.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 344578888776544 47889999999986542 2234667899999999999 8999999999999999999887
Q ss_pred ------eEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEee--cCCCCCeEEEEECCCCCEEEEec
Q psy4393 102 ------KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSS 172 (247)
Q Consensus 102 ------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~ 172 (247)
+.+..+.+|...|.+++|+|++ .++++++.|+.|++||+++++.+..+ ..|...|.+++|+|++.+|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 5567888999999999999998 69999999999999999999999888 78999999999999999999999
Q ss_pred CCCeEEEEeCCCceeeeee-ccCCCCCeEEEEECCCCCEEEEE---EcCCeEEEEECCCcc
Q psy4393 173 YDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDSKVVT 229 (247)
Q Consensus 173 ~dg~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~vwd~~~~~ 229 (247)
.||.|++||+++++.+..+ ..+....+..+.|+|++++|++| +.|+.|++||.+...
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 9999999999999887776 33334447889999999999999 789999999998754
No 102
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=224.73 Aligned_cols=207 Identities=15% Similarity=0.101 Sum_probs=170.9
Q ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-EEEEEecccCCeEEE--EECCCC-CEEEEEcCCCeEEEE
Q psy4393 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDV--AWSSDS-RLLVSGSDDKTLKIW 96 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~v~ 96 (247)
.++.+|...|++++|++++ .|++|+.||.|++||+.++. ....+.+|...|.++ .|+|++ .+|++++.|++|++|
T Consensus 260 ~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW 338 (524)
T 2j04_B 260 LTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338 (524)
T ss_dssp EEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred EEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence 4567899999999999864 79999999999999998653 345678899999999 578887 899999999999999
Q ss_pred ECCCceEEEEEecCCc--cEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393 97 ELSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 174 (247)
Q Consensus 97 d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 174 (247)
|+++++....+.+|.. .+.+++|+|++..+++++.|+.|++||++++.++..+..|.+.|.+++|+|++++|++|+.|
T Consensus 339 D~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 339 NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp CGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT
T ss_pred ECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECC
Confidence 9998776655555542 47789999999999999999999999999988877888899999999999999999999999
Q ss_pred CeEEEEeCCCce--------------eeeee-----------------------------ccCCCCCeEEEEECCCCC--
Q psy4393 175 GLCRIWDTASGQ--------------CLKTL-----------------------------IDDDNPPVSFVKFSPNGK-- 209 (247)
Q Consensus 175 g~i~v~d~~~~~--------------~~~~~-----------------------------~~~~~~~v~~~~~s~~~~-- 209 (247)
|.|++||+.... .+..+ ...+...|.+++|+|+++
T Consensus 419 gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~ 498 (524)
T 2j04_B 419 GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGG 498 (524)
T ss_dssp TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTT
T ss_pred CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCcc
Confidence 999999864310 00000 112345678899999964
Q ss_pred -EEEEEEcCCeEEEEECCCc
Q psy4393 210 -YILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 210 -~l~~~~~dg~i~vwd~~~~ 228 (247)
++++|+.||.|+||+.+..
T Consensus 499 ~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 499 KCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp TEEEEECTTSEEEEEECSCC
T ss_pred HHHHhhccCceEEEEEcccc
Confidence 9999999999999998753
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=1.5e-29 Score=231.24 Aligned_cols=208 Identities=30% Similarity=0.526 Sum_probs=187.0
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC--CCCEEEEEcCCCeEEEE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIW 96 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~ 96 (247)
...++.+|...|.+++|+|++++|++++.||.|++||..+++....+.+|...|.+++|+| ++..+++++.|+.|++|
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 4556778999999999999999999999999999999999999999999999999999999 55689999999999999
Q ss_pred ECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee---------------------------
Q psy4393 97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL--------------------------- 149 (247)
Q Consensus 97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------------------------- 149 (247)
|+.+++....+.+|...|.+++|+|++..+++++.||.|++||+++++....+
T Consensus 729 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 808 (1249)
T 3sfz_A 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808 (1249)
T ss_dssp ETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred ECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence 99999999999999999999999999999999999999999999876543322
Q ss_pred ----------------------------cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEE
Q psy4393 150 ----------------------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201 (247)
Q Consensus 150 ----------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~ 201 (247)
..|...+.+++|+|++.++++++.+|.+++||+.+++....+. .+...|.+
T Consensus 809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~ 887 (1249)
T 3sfz_A 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHG 887 (1249)
T ss_dssp TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEE
T ss_pred CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEE
Confidence 1456778899999999999999999999999999988776654 56678999
Q ss_pred EEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393 202 VKFSPNGKYILAATLDNTLKLWDSKV 227 (247)
Q Consensus 202 ~~~s~~~~~l~~~~~dg~i~vwd~~~ 227 (247)
++|+|++++|++++.||.|++||...
T Consensus 888 v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 888 VMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEECCCCCEEEEEeCCCeEEEEEccc
Confidence 99999999999999999999999653
No 104
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=1.1e-28 Score=201.89 Aligned_cols=217 Identities=23% Similarity=0.425 Sum_probs=187.2
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS 99 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 99 (247)
.+.+.+|...|++++|+|+|++|++|+.||.|++||..+++....+.+|...+.++.|+ +..+++++.|+.+++||..
T Consensus 140 ~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~ 217 (420)
T 4gga_A 140 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVR 217 (420)
T ss_dssp EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETT
T ss_pred EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeec
Confidence 34556788899999999999999999999999999999999999999999999988774 6799999999999999987
Q ss_pred Cc-eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe----EEEeecCCCCCeEEEEECCCCC-EEEE--e
Q psy4393 100 SG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK----CLKTLPAHSDPVSAVHFNRDGS-LIVS--S 171 (247)
Q Consensus 100 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~l~~--~ 171 (247)
.. ..+..+.+|...+..+.++|++..+++++.|+.+++||..+++ .+.....|...|.+++|+|++. ++++ |
T Consensus 218 ~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g 297 (420)
T 4gga_A 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297 (420)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC
T ss_pred ccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee
Confidence 64 4566788999999999999999999999999999999998765 3455677889999999999765 5544 4
Q ss_pred cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE--cCCeEEEEECCCcceEEEEccCCcc
Q psy4393 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT--LDNTLKLWDSKVVTPAIICSTPLNL 240 (247)
Q Consensus 172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~ 240 (247)
+.|+.|++||+.+++....+.. ...+..+.|+|+++.+++++ .||.|+|||.++++++..+..|...
T Consensus 298 s~D~~I~iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~ 366 (420)
T 4gga_A 298 TSDRHIRIWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR 366 (420)
T ss_dssp TTTCEEEEEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC
T ss_pred cCCCEEEEEeCCccccceeecc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC
Confidence 5799999999999988776643 34688899999999998876 6899999999999999888877653
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=3.7e-29 Score=205.45 Aligned_cols=200 Identities=26% Similarity=0.563 Sum_probs=178.1
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
...++.+|.+.|.+++| ++++|++|+.||.|++||..+++....+.+|...|.+++|++ ..+++++.|+.|++||+
T Consensus 165 ~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 240 (435)
T 1p22_A 165 CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDM 240 (435)
T ss_dssp EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEEC
T ss_pred EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeC
Confidence 44567789999999999 788999999999999999999999999999999999999974 58999999999999999
Q ss_pred CCceEE---EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393 99 SSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 175 (247)
Q Consensus 99 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 175 (247)
.++... ..+.+|...+.++.+ +++.+++|+.|+.|++||+++++.+..+..|...+.++.+ ++.++++|+.||
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg 316 (435)
T 1p22_A 241 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN 316 (435)
T ss_dssp SSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS
T ss_pred CCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC
Confidence 887644 567788889999988 6789999999999999999999999999999999999998 468999999999
Q ss_pred eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
.|++||+++++.+..+. .+...+.+++| ++++|++|+.||.|++||.+...
T Consensus 317 ~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 317 TIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp CEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred eEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 99999999998777654 45677999988 78899999999999999987665
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.3e-30 Score=204.21 Aligned_cols=197 Identities=11% Similarity=0.072 Sum_probs=159.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecC---------CCeEEEEEe-cccCCeEEEEECC--CCCEEEEEcCCCeEEE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAY---------DGKFEKTIS-GHKLGISDVAWSS--DSRLLVSGSDDKTLKI 95 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v 95 (247)
..|.++.|+|+ +++++.|+.+++|+.. +++...... +|...|.+++|+| +++++++++.|+.|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 45667778887 8899999999999765 333333333 5557899999999 9999999999999999
Q ss_pred EECCCceEEEEEe-cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE-EeecC-CCCCeEEEEECCCCCEEEEec
Q psy4393 96 WELSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL-KTLPA-HSDPVSAVHFNRDGSLIVSSS 172 (247)
Q Consensus 96 ~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~ 172 (247)
||+++++...... .+...+.+++|+|++.++++|+.|+.|++||+++++.+ ..+.. |..+|.+++|+|++.+|++++
T Consensus 154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~ 233 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC 233 (343)
T ss_dssp EESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred EECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence 9999988766553 34457899999999999999999999999999999877 67777 999999999999999999999
Q ss_pred CCCeEEEEeCCCceeeeeecc--CCCCCe--EEEEECCCCCEEEEEEc-CCeEEEEECCCc
Q psy4393 173 YDGLCRIWDTASGQCLKTLID--DDNPPV--SFVKFSPNGKYILAATL-DNTLKLWDSKVV 228 (247)
Q Consensus 173 ~dg~i~v~d~~~~~~~~~~~~--~~~~~v--~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~ 228 (247)
++.|++||+++.+....+.. .+...+ .+++|+|+|++|++++. |+.|+||+....
T Consensus 234 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 234 -DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp -SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred -CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 55999999998765543321 111222 46999999999999998 999999987543
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5.4e-30 Score=204.77 Aligned_cols=211 Identities=23% Similarity=0.298 Sum_probs=169.5
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEE--CCCCCEEEEEcCCCeEEEE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSRLLVSGSDDKTLKIW 96 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~v~ 96 (247)
....+.+|...|.+++|+|++++|++++.||.|++||..+++... +..|...|.+++| +|+++++++++.|+.|++|
T Consensus 78 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 156 (368)
T 3mmy_A 78 IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156 (368)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred eEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence 335677899999999999999999999999999999998887655 5668889999999 8999999999999999999
Q ss_pred ECCCceEEEEEecCC-----------------------------------------ccEEEEEEcCCCC----EEEEeeC
Q psy4393 97 ELSSGKCLKTLKGHS-----------------------------------------NYVFCCNFNPQSN----LIVSGSF 131 (247)
Q Consensus 97 d~~~~~~~~~~~~~~-----------------------------------------~~v~~~~~~~~~~----~l~~~~~ 131 (247)
|+++++.+..+..+. ....++.+.++.. .+++++.
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 157 DTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp CSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred ECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 998876655544322 1123333333332 2899999
Q ss_pred CCCEEEEECCCC---eEEEeecCCCC------------CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC
Q psy4393 132 DESVRIWDVRTG---KCLKTLPAHSD------------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196 (247)
Q Consensus 132 d~~i~v~d~~~~---~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 196 (247)
|+.+++||++.. ..+..+..|.. ++.+++|+|++++|++++.||.|++||+.+++.+..+. .+.
T Consensus 237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~ 315 (368)
T 3mmy_A 237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLD 315 (368)
T ss_dssp TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCS
T ss_pred CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCC
Confidence 999999999877 44556666654 79999999999999999999999999999988776654 456
Q ss_pred CCeEEEEECCCCCEEEEEEcCCeEEEEE---CCCcceE
Q psy4393 197 PPVSFVKFSPNGKYILAATLDNTLKLWD---SKVVTPA 231 (247)
Q Consensus 197 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd---~~~~~~~ 231 (247)
.+|..++|+|++++|++++.|+..+.|+ .+....+
T Consensus 316 ~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp SCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred CCceEEEECCCCCeEEEEecccccccccccCCCcccee
Confidence 7899999999999999999987555444 4444443
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=6.6e-29 Score=203.96 Aligned_cols=205 Identities=25% Similarity=0.523 Sum_probs=182.1
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393 24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC 103 (247)
Q Consensus 24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 103 (247)
.+|...|.++.| +++++++|+.||.|++||..+++....+.+|...|.+++| +++.+++++.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 356778998887 7899999999999999999999999999999999999998 788999999999999999999999
Q ss_pred EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE---EeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393 104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180 (247)
Q Consensus 104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 180 (247)
+..+..|...|.++.|++ ..+++++.|+.|++||++++... ..+..|...+.++++ ++.++++|+.||.|++|
T Consensus 206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW 281 (435)
T ss_dssp EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence 999999999999999974 59999999999999999987654 567789999999999 77899999999999999
Q ss_pred eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
|+++++.+..+. .+...+.+++| +++++++|+.||.|++||.+++.++..+..+..
T Consensus 282 d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~ 337 (435)
T 1p22_A 282 NTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337 (435)
T ss_dssp ETTTCCEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred ECCcCcEEEEEc-CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence 999998777664 45567888888 468999999999999999999988887776554
No 109
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=4.1e-29 Score=205.67 Aligned_cols=210 Identities=32% Similarity=0.649 Sum_probs=185.3
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS 99 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 99 (247)
...+.+|.+.|.. +++++|++|++|+.||.|++||..+++....+.+|...|.++.|+ ++.+++++.|+.|++||+.
T Consensus 111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 3457789887533 355578999999999999999999999999999999999999997 5799999999999999999
Q ss_pred CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393 100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 179 (247)
Q Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 179 (247)
+++....+.+|...|.++.++ +..+++++.|+.|++||+++++.+..+..|..++.++.+ ++.++++++.||.|++
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence 999999999999999999986 568999999999999999999999999999999999999 6788999999999999
Q ss_pred EeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393 180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN 239 (247)
Q Consensus 180 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 239 (247)
||+++++.+..+. .+...+.+++| ++.++++++.||.|++||.++.+++..+..+..
T Consensus 264 wd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 320 (445)
T 2ovr_B 264 WDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320 (445)
T ss_dssp EEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS
T ss_pred EECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc
Confidence 9999988777654 45567888988 789999999999999999999888777665543
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.5e-30 Score=210.18 Aligned_cols=192 Identities=13% Similarity=0.167 Sum_probs=162.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccC-----CeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-----GISDVAWSSDSRLLVSGSDDKTLKIWELS 99 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 99 (247)
.|...|.+++|+|+|++||+++.||.|++|+... ....+. |.. .+.+++|+|||++|++|+.||.|++||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 4578899999999999999999999999999543 445555 554 49999999999999999999999999998
Q ss_pred Cce-------EEEEE----ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE---EEee-cCCCCCeEEEEECCC
Q psy4393 100 SGK-------CLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---LKTL-PAHSDPVSAVHFNRD 164 (247)
Q Consensus 100 ~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~-~~~~~~i~~~~~~~~ 164 (247)
++. .+..+ .+|...|.+++|+|++ +++++.|+.+++||+..+.. ...+ ..|...|.+++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence 874 35666 5566799999999999 78888999999999987763 2345 3677889999999
Q ss_pred CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEE--CCCCCEEEEEEcCCeEEEEECC
Q psy4393 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
+..+|+++ ++.|++||+.+++...... ++...+..++| +|+++.|++++.||. ++|..+
T Consensus 236 g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 236 DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 68888887 6999999999877633332 57778999999 999999999999999 999976
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.4e-30 Score=209.05 Aligned_cols=200 Identities=13% Similarity=0.124 Sum_probs=147.6
Q ss_pred EecCCCCeEEEEECC--------CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeE
Q psy4393 23 LAGHTKAVSSVKFSP--------NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTL 93 (247)
Q Consensus 23 ~~~h~~~v~~~~~s~--------~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i 93 (247)
+.+|.+.|.+++|+| |+++||+|+.|++|++||+.++.....+..|...+.+++|+|++. +|++++.|+.|
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v 211 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI 211 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence 468999999999997 889999999999999999988888888888899999999999874 79999999999
Q ss_pred EEEECCCceEEEEE-------------------------ecCCccEEEEEEc-CCCCEEEEeeCCCCEEEEECCCCeEEE
Q psy4393 94 KIWELSSGKCLKTL-------------------------KGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVRTGKCLK 147 (247)
Q Consensus 94 ~v~d~~~~~~~~~~-------------------------~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~ 147 (247)
++||+.+++..... .++...+.++.|. +++..+++++.|+.+++||+..++...
T Consensus 212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~ 291 (393)
T 4gq1_A 212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN 291 (393)
T ss_dssp EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence 99999876543221 2455567777775 799999999999999999998876555
Q ss_pred eecCCCCCeEEE------------------EECC--CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC
Q psy4393 148 TLPAHSDPVSAV------------------HFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 207 (247)
Q Consensus 148 ~~~~~~~~i~~~------------------~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 207 (247)
.+..+...+..+ .++| ++.++++|+.||.|++||+.+++....... +..+|..++|+||
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~-~~~~V~svafspd 370 (393)
T 4gq1_A 292 EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ-LGMPIVDFCWHQD 370 (393)
T ss_dssp ------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE-CSSCEEEEEECTT
T ss_pred eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC-CCCcEEEEEEcCC
Confidence 544443333222 2332 344677888999999999998877665543 4568999999999
Q ss_pred CCEEEEEEcCCeEEEEE
Q psy4393 208 GKYILAATLDNTLKLWD 224 (247)
Q Consensus 208 ~~~l~~~~~dg~i~vwd 224 (247)
|++||+++.+| +.+|.
T Consensus 371 G~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 371 GSHLAIATEGS-VLLTR 386 (393)
T ss_dssp SSEEEEEESSE-EEEEE
T ss_pred CCEEEEEeCCC-eEEEE
Confidence 99999998766 55554
No 112
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=4.7e-28 Score=199.32 Aligned_cols=207 Identities=33% Similarity=0.612 Sum_probs=185.6
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
...++.+|.+.|.+++|+ ++++++|+.||.|++||..+++....+.+|...|.++.|+ ++.+++++.|+.|++||+
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence 456677899999999997 6799999999999999999999999999999999999995 578999999999999999
Q ss_pred CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393 99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 178 (247)
Q Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 178 (247)
.+++.+..+.+|...+.++.+ ++..+++++.|+.|++||+++++.+..+..|...+.++.+ ++.++++++.||.|+
T Consensus 227 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~ 302 (445)
T 2ovr_B 227 ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR 302 (445)
T ss_dssp SSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred CCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEE
Confidence 999999999999999999988 6789999999999999999999999999999999999999 788999999999999
Q ss_pred EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393 179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 236 (247)
+||+++++....+. .+...+..+.+ ++++|++++.||.|++||.++.+++..+..
T Consensus 303 i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 303 VWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp EEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred EEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence 99999998777654 44556776666 567999999999999999999888877765
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-30 Score=210.81 Aligned_cols=205 Identities=12% Similarity=0.125 Sum_probs=162.0
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-----------------------------EEEEEe-cc
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------------------------FEKTIS-GH 68 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-----------------------------~~~~~~-~~ 68 (247)
+..+.+.-...|.+++|+|||+++|+++.|++|+ |...++ ....+. .+
T Consensus 7 ~~~~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~ 84 (588)
T 2j04_A 7 LLVDRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP 84 (588)
T ss_dssp EEECSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC
T ss_pred hcccHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC
Confidence 4445556678999999999999999999999995 322211 001111 34
Q ss_pred cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCc-----cEEEEEEcCCCCEEEEeeCCCCEEEEECCCC
Q psy4393 69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVRTG 143 (247)
Q Consensus 69 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 143 (247)
...|.+++|+|+|+.|++++.||.+++||.+. .+..+. |.. .+.+++|+|+|+++++|+.||.|++||+..+
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 56799999999999999999999999999644 555555 554 4999999999999999999999999999987
Q ss_pred e-------EEEee----cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceee---eeeccCCCCCeEEEEECCCCC
Q psy4393 144 K-------CLKTL----PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGK 209 (247)
Q Consensus 144 ~-------~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~~v~~~~~s~~~~ 209 (247)
. .+..+ ..|...|.+++|+|+| +++++.|+.+++||+.+++.. ..+...+...|..++|+ |+
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence 4 24555 5677899999999999 788888999999999887632 33433555788999999 68
Q ss_pred EEEEEEcCCeEEEEECCCcceEEE
Q psy4393 210 YILAATLDNTLKLWDSKVVTPAII 233 (247)
Q Consensus 210 ~l~~~~~dg~i~vwd~~~~~~~~~ 233 (247)
.||+++ +++|++||.........
T Consensus 238 ~LASa~-~~tIkLWd~~~~~~~~~ 260 (588)
T 2j04_A 238 KVVLTC-PGYVHKIDLKNYSISSL 260 (588)
T ss_dssp EEEEEC-SSEEEEEETTTTEEEEE
T ss_pred EEEEEe-CCeEEEEECCCCeEEEE
Confidence 888887 79999999988776333
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=196.51 Aligned_cols=196 Identities=15% Similarity=0.062 Sum_probs=159.1
Q ss_pred cCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCeEEEEEec-ccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393 25 GHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 25 ~h~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 101 (247)
+|.+.|.+++|+| +++++++++.||.|++||+.+++....... +...+.+++|+|++.++++|+.|+.|++||++++
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 6778999999999 999999999999999999998887655533 4557999999999999999999999999999998
Q ss_pred eEE-EEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC---CCCCe--EEEEECCCCCEEEEecC-
Q psy4393 102 KCL-KTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA---HSDPV--SAVHFNRDGSLIVSSSY- 173 (247)
Q Consensus 102 ~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~i--~~~~~~~~~~~l~~~~~- 173 (247)
+.. ..+.. |...|.+++|+|++.++++++ ++.|++||++.++.+..+.. |...+ .+++|+|++++|++++.
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~ 281 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE 281 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCC
Confidence 876 67777 899999999999999999999 45999999998876544433 33333 36999999999999888
Q ss_pred CCeEEEEeCCCceeeeeeccCCCCCeEEEEECC---CCCEEEEEEcCCeEEEEECC
Q psy4393 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP---NGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~ 226 (247)
++.+++|++......-.. .++..+.|++ +.+.+++++.||.+.++-..
T Consensus 282 d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 282 SNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp TTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred CCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 999999998654322211 3566788888 88999999999999988543
No 115
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.7e-27 Score=194.71 Aligned_cols=211 Identities=26% Similarity=0.453 Sum_probs=177.5
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC-eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
...++.+|...+.++.++ +..|++|+.|+.+++|+.... .....+.+|...+..+.|+|+++.+++++.|+.+++|+
T Consensus 181 ~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 181 RLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258 (420)
T ss_dssp EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEe
Confidence 445677899999988874 679999999999999998753 45567888999999999999999999999999999999
Q ss_pred CCCce----EEEEEecCCccEEEEEEcCCC-CEEEE--eeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEE
Q psy4393 98 LSSGK----CLKTLKGHSNYVFCCNFNPQS-NLIVS--GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 170 (247)
Q Consensus 98 ~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 170 (247)
..+++ .+.....+...|.+++|+|.+ .++++ |+.|+.|++||+++++....+..+ ..+.++.|+|++..+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS 337 (420)
T ss_dssp SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEE
T ss_pred eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEE
Confidence 98764 345566788899999999965 45554 457999999999999988888765 46888999999998876
Q ss_pred ec--CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393 171 SS--YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII 233 (247)
Q Consensus 171 ~~--~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 233 (247)
++ .|+.|++||+.+++.+..+. .|...|.+++|+|||++|++|+.|++|+|||.....|...
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred EEecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence 54 78999999999998887764 5667899999999999999999999999999987766544
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.1e-26 Score=186.07 Aligned_cols=216 Identities=15% Similarity=0.171 Sum_probs=177.6
Q ss_pred EEEEecCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEE
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWE 97 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d 97 (247)
...+..| ..+.+++|+|+|+++ ++++.++.|++||..+++....+..+. .+.+++|+|+++.++ ++..++.|++||
T Consensus 25 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d 102 (391)
T 1l0q_A 25 TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID 102 (391)
T ss_dssp EEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE
Confidence 3445444 468999999999987 566789999999999998888777555 899999999999875 555679999999
Q ss_pred CCCceEEEEEecCCccEEEEEEcCCCCEE-EEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE-EEecCCC
Q psy4393 98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 175 (247)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg 175 (247)
+.+++....+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++.+..+..+. .+.+++|+|+++.+ ++++.++
T Consensus 103 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~ 180 (391)
T 1l0q_A 103 TTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSM 180 (391)
T ss_dssp TTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTT
T ss_pred CCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCC
Confidence 9999887777654 457899999999977 678889999999999999888877654 56899999999877 5777889
Q ss_pred eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE---cCCeEEEEECCCcceEEEEccCCccc
Q psy4393 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDSKVVTPAIICSTPLNLN 241 (247)
Q Consensus 176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~ 241 (247)
.|++||+++++....+.. ...+..++|+|++++|++++ .++.|++||.++.+++..+..+..+.
T Consensus 181 ~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 247 (391)
T 1l0q_A 181 SISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPA 247 (391)
T ss_dssp EEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEE
T ss_pred EEEEEECCCCeEEEEEec--CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCcc
Confidence 999999999887665532 34678899999999999888 68999999999888777666655443
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.8e-27 Score=190.60 Aligned_cols=200 Identities=16% Similarity=0.218 Sum_probs=160.8
Q ss_pred CCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC-------------------------
Q psy4393 28 KAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS------------------------- 81 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------- 81 (247)
..+..+++.++++.+ ++++.|+.|++||..+++....+. +...|.++.|+++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDI 137 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCE
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEec
Confidence 357788899988877 457778999999999988877776 45578888887642
Q ss_pred ----------CEEEE--EcCCCeEEEEECCCce----------------EEEEEecCCccEEEEEEcCCCCEEEEeeCCC
Q psy4393 82 ----------RLLVS--GSDDKTLKIWELSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133 (247)
Q Consensus 82 ----------~~l~~--~~~d~~i~v~d~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 133 (247)
..++. ++.+|.|++||+.++. .+..+.+|...|.+++|+|++.++++++.|+
T Consensus 138 ~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~ 217 (355)
T 3vu4_A 138 RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG 217 (355)
T ss_dssp EEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred cCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence 23333 5778899999998754 1567889999999999999999999999999
Q ss_pred C-EEEEECCCCeEEEeec-C-CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeee--e------------------
Q psy4393 134 S-VRIWDVRTGKCLKTLP-A-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK--T------------------ 190 (247)
Q Consensus 134 ~-i~v~d~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~------------------ 190 (247)
. |++||+++++.+..+. . |...|.+++|+|++++|++++.|+.|++||+..+.... .
T Consensus 218 ~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 218 TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 8 9999999999999887 4 89999999999999999999999999999997653111 0
Q ss_pred --eccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393 191 --LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 191 --~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
+......+...++|++++++|++++.||.+++|+....
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00111222356899999999999999999999997653
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=1e-26 Score=182.59 Aligned_cols=207 Identities=25% Similarity=0.448 Sum_probs=167.9
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 30 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
...++||+++ +||+| .|++|++||..+++....+. +|...|.+++|+|+++++++|+.|+.|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4678999886 66665 59999999999998877765 56677999999999999999999999999999887765544
Q ss_pred e-----------------------------------------cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-
Q psy4393 108 K-----------------------------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC- 145 (247)
Q Consensus 108 ~-----------------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~- 145 (247)
. +|...+..+.+.++++++++++.|+.|++||+++++.
T Consensus 106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 3 3444566778888999999999999999999987653
Q ss_pred ---EEeecCCCCCeEEEEECCCCCE---EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE--cC
Q psy4393 146 ---LKTLPAHSDPVSAVHFNRDGSL---IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT--LD 217 (247)
Q Consensus 146 ---~~~~~~~~~~i~~~~~~~~~~~---l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d 217 (247)
......+.+.+.++.++|++.. +++++.++.|++||.......... .....+..+.|+|+++.+++++ .|
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cceeeeeeeeecccccceEEEEEcCC
Confidence 3445567788999999997653 346778899999999887765544 3345688899999999988765 78
Q ss_pred CeEEEEECCCcceEEEEccCCcc
Q psy4393 218 NTLKLWDSKVVTPAIICSTPLNL 240 (247)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~ 240 (247)
+.|+|||.++.+++..+..+.+.
T Consensus 264 ~~i~iwd~~~~~~~~~l~gH~~~ 286 (318)
T 4ggc_A 264 NQLVIWKYPTMAKVAELKGHTSR 286 (318)
T ss_dssp CCEEEEETTTCCEEEEECCCSSC
T ss_pred CEEEEEECCCCcEEEEEcCCCCC
Confidence 99999999999999888876653
No 119
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=4.2e-28 Score=194.96 Aligned_cols=216 Identities=13% Similarity=0.116 Sum_probs=164.5
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEE-----------eCCCeEEEEecCCCeEE-EE---Ee-----cccCCeEEEEECC
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASS-----------SADKLIKIWGAYDGKFE-KT---IS-----GHKLGISDVAWSS 79 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~-----------~~dg~v~iw~~~~~~~~-~~---~~-----~~~~~v~~~~~~~ 79 (247)
...+.+|...|.+++++ ++.++++ +.|+.+++|+....... .. .. .+...+..++|+|
T Consensus 66 ~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp 143 (365)
T 4h5i_A 66 EFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR 143 (365)
T ss_dssp EEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred EEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence 34567788888888765 4555554 35778999987543221 11 11 1234578899999
Q ss_pred CCCEEEEE--cCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe--ecCCCCC
Q psy4393 80 DSRLLVSG--SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT--LPAHSDP 155 (247)
Q Consensus 80 ~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~ 155 (247)
||++++++ +.|+.|++||+++++.+..+. +...|.+++|+|+++++++++. +.+.+|+..+++.+.. ...|...
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWS 221 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEE
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCC
Confidence 99987654 468999999999999888776 6677999999999999999885 5577777777765543 3467778
Q ss_pred eEEEEECCCCCEEEEecCCC----eEEEEeCCCceeee---eeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393 156 VSAVHFNRDGSLIVSSSYDG----LCRIWDTASGQCLK---TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 156 i~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
+.+++|+|++..+++++.++ .+.+||+....... .....+..+|.+++|+|||++||+|+.|+.|+|||.++.
T Consensus 222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence 99999999999999998877 68889887654321 223455678999999999999999999999999999999
Q ss_pred ceEEEE-ccCCc
Q psy4393 229 TPAIIC-STPLN 239 (247)
Q Consensus 229 ~~~~~~-~~~~~ 239 (247)
+++..+ ..+..
T Consensus 302 ~~~~~~~~gH~~ 313 (365)
T 4h5i_A 302 SMSKIFKQAHSF 313 (365)
T ss_dssp EEEEEETTSSSS
T ss_pred cEEEEecCcccC
Confidence 988775 44444
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.7e-28 Score=199.09 Aligned_cols=204 Identities=17% Similarity=0.196 Sum_probs=149.1
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCCCeEEEE-----EecccCCeEEEEECC--------CCCEEEEEcCCCeEEEEECCC
Q psy4393 34 KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-----ISGHKLGISDVAWSS--------DSRLLVSGSDDKTLKIWELSS 100 (247)
Q Consensus 34 ~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-----~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~v~d~~~ 100 (247)
.+.+++.+|++++.|++|++||...+..... +.+|...|.+++|+| ++++|++++.|++|++||+.+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 3344566899999999999999987765432 457899999999987 788999999999999999988
Q ss_pred ceEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEee-------------------------cCCCC
Q psy4393 101 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL-------------------------PAHSD 154 (247)
Q Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~-------------------------~~~~~ 154 (247)
+.....+..+...+.+++|+|++ .++++++.|+.|++||+++++..... ..|..
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 88777788888999999999987 47999999999999999887543221 24556
Q ss_pred CeEEEEEC-CCCCEEEEecCCCeEEEEeCCCceeeeeeccC------------------CCCCeEEEEECC--CCCEEEE
Q psy4393 155 PVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------------------DNPPVSFVKFSP--NGKYILA 213 (247)
Q Consensus 155 ~i~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------------~~~~v~~~~~s~--~~~~l~~ 213 (247)
.+.++.|. |++..+++++.|+.+++||+..++....+... ....+. ..|+| ++.++++
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s 334 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-ACPHPRYMDYFATA 334 (393)
T ss_dssp SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC-CEECSSCTTEEEEE
T ss_pred cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee-EEEccCCCCEEEEE
Confidence 67788876 79999999999999999999876543332111 011112 22333 3446677
Q ss_pred EEcCCeEEEEECCCcceEEEEccCC
Q psy4393 214 ATLDNTLKLWDSKVVTPAIICSTPL 238 (247)
Q Consensus 214 ~~~dg~i~vwd~~~~~~~~~~~~~~ 238 (247)
|+.||.|++||...+.+......+.
T Consensus 335 gs~Dg~V~lwd~~~~~~~~~~~~~~ 359 (393)
T 4gq1_A 335 HSQHGLIQLINTYEKDSNSIPIQLG 359 (393)
T ss_dssp ETTTTEEEEEETTCTTCCEEEEECS
T ss_pred ECCCCEEEEEECCCCcEEEEecCCC
Confidence 8889999999999887766554443
No 121
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=4.6e-27 Score=186.01 Aligned_cols=172 Identities=22% Similarity=0.381 Sum_probs=149.3
Q ss_pred eEEEEEecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCC---------eEEEEEecccCCeEEEEECCC--CCEE
Q psy4393 18 VLKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDG---------KFEKTISGHKLGISDVAWSSD--SRLL 84 (247)
Q Consensus 18 ~~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l 84 (247)
.....+.+|...|.+++|+| ++++|++++.||.|++||...+ +....+..|...|.+++|+|+ ++++
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 45566778999999999999 6999999999999999999776 456677888999999999999 9999
Q ss_pred EEEcCCCeEEEEECCCceE------------------------------------------------------------E
Q psy4393 85 VSGSDDKTLKIWELSSGKC------------------------------------------------------------L 104 (247)
Q Consensus 85 ~~~~~d~~i~v~d~~~~~~------------------------------------------------------------~ 104 (247)
++++.|+.|++||+.+++. .
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 9999999999999865321 3
Q ss_pred EEEecCCccEEEEEEcCCC----CEEEEeeCCCCEEEEECCCC-------------------------------------
Q psy4393 105 KTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIWDVRTG------------------------------------- 143 (247)
Q Consensus 105 ~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~------------------------------------- 143 (247)
..+.+|...|.+++|+|++ .++++++.||.|++||++.+
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence 3445678889999999998 89999999999999999864
Q ss_pred ---------eEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeee
Q psy4393 144 ---------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 189 (247)
Q Consensus 144 ---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 189 (247)
+.+..+..|...|++++|+|++++|++++.||.|++||+.+++...
T Consensus 288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 5566778899999999999999999999999999999998875444
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.9e-25 Score=180.52 Aligned_cols=209 Identities=18% Similarity=0.222 Sum_probs=172.5
Q ss_pred CCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEE
Q psy4393 27 TKAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCL 104 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~ 104 (247)
...+.+++|+|++++|+++ ..++.|++||..+++....+.. ...+.+++|+|+++.+ ++++.++.|++||+.+++..
T Consensus 73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 3489999999999988654 4679999999998888777664 4468999999999977 68888999999999999888
Q ss_pred EEEecCCccEEEEEEcCCCCEE-EEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec---CCCeEEEE
Q psy4393 105 KTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIW 180 (247)
Q Consensus 105 ~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~ 180 (247)
..+..+. .+..+.|+|+++.+ ++++.++.|++||+++++....+.. ...+.+++|+|+++++++++ .++.|.+|
T Consensus 152 ~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 152 NTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred EEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 7777654 46889999999877 5677889999999999988777654 45788999999999998887 68999999
Q ss_pred eCCCceeeeeeccCCCCCeEEEEECCCCCEE-EEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393 181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYI-LAATLDNTLKLWDSKVVTPAIICSTPLNL 240 (247)
Q Consensus 181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 240 (247)
|+.+++.+..+..+ ..+..++|+|++++| ++++.|+.|++||..+.+.+..+.....+
T Consensus 230 d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 230 DTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp ETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred ECCCCeEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 99998877665433 346889999999988 55678999999999988877666555443
No 123
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.6e-27 Score=208.38 Aligned_cols=198 Identities=12% Similarity=0.217 Sum_probs=165.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL 104 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 104 (247)
.|...|.+++|+| |++|++++.|+.|++||+.+++....+. +...|++++|+|+++++++++.||.|++||+++++..
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 5788999999999 8899999999999999999888877775 6678999999999999999999999999999987653
Q ss_pred -----------EEEecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCC------------------CC
Q psy4393 105 -----------KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAH------------------SD 154 (247)
Q Consensus 105 -----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------------------~~ 154 (247)
..+++|.+.|.+++|+|+ +..+++|+.|+.+ +||+++++.+..+..| ..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 123567788999999996 5789999999999 9999999988777655 46
Q ss_pred CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeee--ec----c-----------CCCCCeEEEEEC----CCC-CEEE
Q psy4393 155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT--LI----D-----------DDNPPVSFVKFS----PNG-KYIL 212 (247)
Q Consensus 155 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~----~-----------~~~~~v~~~~~s----~~~-~~l~ 212 (247)
.|.+++|+|+|.+|++++.||.|++||+++++.+.. +. . .+..+|..++|+ |++ .+|+
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 799999999999999999999999999998876543 21 1 123468999994 554 4667
Q ss_pred EEEcC-----CeEEEEEC
Q psy4393 213 AATLD-----NTLKLWDS 225 (247)
Q Consensus 213 ~~~~d-----g~i~vwd~ 225 (247)
+|+.| +.+.+|+.
T Consensus 293 sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEECSTTSSCCCEEEEEE
T ss_pred eCCCCCCCCCceEEEEec
Confidence 77665 37889983
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=4.9e-26 Score=186.30 Aligned_cols=211 Identities=10% Similarity=0.071 Sum_probs=177.6
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCce
Q psy4393 24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGK 102 (247)
Q Consensus 24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~ 102 (247)
.+|.+.|.+++|+|+++++++++.|+.|++||..+++....+..+...+.+++|+|+++.++ +++.++.|++||+.+++
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 46888999999999999999999999999999998888888888888899999999999885 55579999999999988
Q ss_pred EEEEEecCCccEEEEEEcCCCCEEEEee--------CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE-EEecC
Q psy4393 103 CLKTLKGHSNYVFCCNFNPQSNLIVSGS--------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSY 173 (247)
Q Consensus 103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~ 173 (247)
.+..+..+ ..+.+++|+|+++.+++++ .|+.|++||+++++.+..+ .+...+.+++|+|+++.+ ++++.
T Consensus 246 ~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 246 EIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp EEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETT
T ss_pred EEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecC
Confidence 87776654 4588999999999999887 4889999999998876655 334578899999999754 66689
Q ss_pred CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc---------------CCeEEEEECCCcceEEEEccCC
Q psy4393 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL---------------DNTLKLWDSKVVTPAIICSTPL 238 (247)
Q Consensus 174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~ 238 (247)
++.+.+||+.+++....+. ....+..++|+|++++|++++. ||.|++||..+.+.+..+....
T Consensus 324 ~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~ 401 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN 401 (433)
T ss_dssp TTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS
T ss_pred CCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC
Confidence 9999999999888766553 3456889999999999998886 5799999998887766655433
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=7.2e-26 Score=185.31 Aligned_cols=208 Identities=12% Similarity=0.107 Sum_probs=172.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE-----EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-----ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK 102 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 102 (247)
..+.+++|+|++.++++++.++.|++||..+++.... +.+|...+.+++|+|++..+++++.++.|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 4566999999777788888889999999998877653 33567789999999999999999999999999999998
Q ss_pred EEEEEecCCccEEEEEEcCCCCEEEE-eeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec--------C
Q psy4393 103 CLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--------Y 173 (247)
Q Consensus 103 ~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~ 173 (247)
....+..+...+.+++|+|+++.+++ ++.++.|++||+++++.+..+..+ ..+.+++|+|+++.+++++ .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccC
Confidence 88888888888999999999998854 457899999999999888777664 4589999999999998887 4
Q ss_pred CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEE-EEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI-LAATLDNTLKLWDSKVVTPAIICSTPL 238 (247)
Q Consensus 174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~ 238 (247)
|+.|++||+.+++....... ...+..++|+|+++.+ ++++.|+.|++||.++.+.+..+....
T Consensus 282 dg~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~ 345 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTIGP--PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFD 345 (433)
T ss_dssp CEEEEEEETTTTEEEEEEEE--EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred CCeEEEEECCCCcEEeeccC--CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCC
Confidence 88999999998876655422 2357889999999866 555789999999999877666555433
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=4.6e-25 Score=180.14 Aligned_cols=204 Identities=18% Similarity=0.183 Sum_probs=163.8
Q ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCC---eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCC--eEE
Q psy4393 21 FTLAGHTKAVSSVKFSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDK--TLK 94 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~ 94 (247)
..+.+|...|.+++|+|+|++|++++.++ .|++||..+++.. .+..+...+.+++|+|||+.|+ +++.++ .|+
T Consensus 172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 250 (415)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence 34557889999999999999999988775 9999999887764 4666777899999999999887 666555 599
Q ss_pred EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393 95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 171 (247)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 171 (247)
+||+.+++. ..+..+...+.++.|+|+++.+++++. ++ .|++||+.+++. ..+..+...+.+++|+|+|++|+++
T Consensus 251 ~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 251 VMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp EEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEE
T ss_pred EEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEE
Confidence 999988765 456677788999999999999888876 44 577889987763 3445566778899999999999887
Q ss_pred cCC---CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC---eEEEEECCCcce
Q psy4393 172 SYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDSKVVTP 230 (247)
Q Consensus 172 ~~d---g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~ 230 (247)
+.+ ..|.+||+.+++.. .+.. + ..+..++|+|||++|++++.++ .|.+||......
T Consensus 329 ~~~~g~~~i~~~d~~~~~~~-~l~~-~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~ 390 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGGVQ-VLSS-T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 390 (415)
T ss_dssp EECSSCEEEEEEETTTCCEE-ECCC-S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred ECcCCceEEEEEECCCCCEE-EecC-C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence 764 58999999988753 3322 2 2788999999999999988776 899999875544
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=3.5e-26 Score=178.41 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=129.6
Q ss_pred EEEEEecCCCCeEEEEECC---CCCEEEEEeCCCeEEEEecCCCeEEEEEeccc---CCeEEEEECCCCCEE--------
Q psy4393 19 LKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHK---LGISDVAWSSDSRLL-------- 84 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~---~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l-------- 84 (247)
...++.+|...++.++|+| ++++|++++.|++|++||..+++....+.+|. ..+.+++|+|+|+++
T Consensus 170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~ 249 (356)
T 2w18_A 170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA 249 (356)
T ss_dssp EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----
T ss_pred eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC
Confidence 4445567888888888888 66889999999999999999999999987654 357778999999876
Q ss_pred ----EEEcCCCeEEEEECCCceEEEEE-----ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCC
Q psy4393 85 ----VSGSDDKTLKIWELSSGKCLKTL-----KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP 155 (247)
Q Consensus 85 ----~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 155 (247)
++++.|+++++||..+++.+..+ .+|...+.+..++ +.++++++.|+.|+|||+++++.+..+..|...
T Consensus 250 ~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~ 327 (356)
T 2w18_A 250 KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ 327 (356)
T ss_dssp --------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--C
T ss_pred cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC
Confidence 56778999999999999877654 2444444433333 778999999999999999999999999888765
Q ss_pred e-EEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393 156 V-SAVHFNRDGSLIVSSSYDGLCRIWDT 182 (247)
Q Consensus 156 i-~~~~~~~~~~~l~~~~~dg~i~v~d~ 182 (247)
+ .+++|+|||++|++|+.|++|++||+
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 4 46899999999999999999999985
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2e-23 Score=170.38 Aligned_cols=207 Identities=12% Similarity=0.091 Sum_probs=161.0
Q ss_pred EEEEecCCCCeEEEEECC--------------CCCEEEEEeCC------CeEEEEecCCCeEEEEEecccCCeEEEEECC
Q psy4393 20 KFTLAGHTKAVSSVKFSP--------------NGEWLASSSAD------KLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~--------------~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (247)
..++.+|...+..+++++ .+..++.++.+ +.|++||... .....+..|...+.+++|+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Sp 188 (415)
T 2hqs_A 110 QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSP 188 (415)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECT
T ss_pred eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcC
Confidence 345667777776666654 25566665544 7999999864 44566777888999999999
Q ss_pred CCCEEEEEcCCC---eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEE-EeeCCCC--EEEEECCCCeEEEeecCCC
Q psy4393 80 DSRLLVSGSDDK---TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDES--VRIWDVRTGKCLKTLPAHS 153 (247)
Q Consensus 80 ~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~v~d~~~~~~~~~~~~~~ 153 (247)
+|+.|++++.++ .|++||+.+++.. .+..+...+.+++|+|+++.++ +++.++. |++||+.+++. ..+..+.
T Consensus 189 dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~ 266 (415)
T 2hqs_A 189 DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR 266 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC
Confidence 999999998875 9999999988765 4666777899999999999887 5665554 99999998765 5666778
Q ss_pred CCeEEEEECCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC---CeEEEEECCC
Q psy4393 154 DPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDSKV 227 (247)
Q Consensus 154 ~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~ 227 (247)
..+.+++|+|+|+.|++++. ++ .|.+||+.+++... + ..+...+..++|+|||++|++++.+ +.|.+||..+
T Consensus 267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-I-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-C-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-E-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 88999999999998888775 44 68888998876432 2 2234567889999999999988864 5899999988
Q ss_pred cceE
Q psy4393 228 VTPA 231 (247)
Q Consensus 228 ~~~~ 231 (247)
.+..
T Consensus 345 ~~~~ 348 (415)
T 2hqs_A 345 GGVQ 348 (415)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 7654
No 129
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=4e-24 Score=175.41 Aligned_cols=200 Identities=15% Similarity=0.098 Sum_probs=155.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC----------eEEE-----EEecccCCeEEEEECCCCCEEE----EE
Q psy4393 27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----------KFEK-----TISGHKLGISDVAWSSDSRLLV----SG 87 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----------~~~~-----~~~~~~~~v~~~~~~~~~~~l~----~~ 87 (247)
...+..+++++++.++++++.++ +++|+.... .... ....+...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34578899999999999998887 888764210 0111 1112455799999999999999 78
Q ss_pred cCCCeEEEEECCCc--------e---EEEEEecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCC
Q psy4393 88 SDDKTLKIWELSSG--------K---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP 155 (247)
Q Consensus 88 ~~d~~i~v~d~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 155 (247)
+.|+.|++||+.++ + ....+.+|...|.+++|+|+ +.++++++.||.|++||++++..+.....|...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999998654 1 13445668889999999997 889999999999999999998776666678889
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccC------CCCCeEEEEECCCCCEEEEEE-cCC------eEEE
Q psy4393 156 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVKFSPNGKYILAAT-LDN------TLKL 222 (247)
Q Consensus 156 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~-~dg------~i~v 222 (247)
+.+++|+|+|++|++|+.||.|++||.+ ++....+... +...+..++|++++.++++.+ .|| .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 4444333221 123688999999988886543 443 3899
Q ss_pred EECCCc
Q psy4393 223 WDSKVV 228 (247)
Q Consensus 223 wd~~~~ 228 (247)
|+++..
T Consensus 274 ~~l~~~ 279 (434)
T 2oit_A 274 ALLPKK 279 (434)
T ss_dssp EECCCT
T ss_pred EEeccC
Confidence 998754
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=5.1e-23 Score=159.31 Aligned_cols=208 Identities=17% Similarity=0.240 Sum_probs=155.0
Q ss_pred EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-CeEEEEEeccc-CCeEEEEECCCCCEEEEEcC--C--CeEEE
Q psy4393 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHK-LGISDVAWSSDSRLLVSGSD--D--KTLKI 95 (247)
Q Consensus 22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--d--~~i~v 95 (247)
.+..|...|.+++|+|+|++|++++ ++.|.+||..+ ++.......+. ..+.+++|+|+++.+++++. + ..|..
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 3456889999999999999999876 78999999988 76665555543 56888999999999999883 3 34555
Q ss_pred EECCCceEEEEEecCCccEEEEEEcCCCCEEE-EeeCCCCEEEEECCC-CeEEEeecCCCCCeEEEEECCCCCEEEEec-
Q psy4393 96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSS- 172 (247)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 172 (247)
++..++. ...+..+ ..+..+.|+|+++.++ ++..++.+++|++.. +.....+..+...+.+++|+|+++.+++++
T Consensus 115 ~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 192 (297)
T 2ojh_A 115 LPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS 192 (297)
T ss_dssp EETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC
T ss_pred EECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec
Confidence 5555554 3334433 3478889999999877 677889899998632 233455666778899999999999887665
Q ss_pred CCCeEEEEeCC-CceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC-----------CeEEEEECCCcceEEE
Q psy4393 173 YDGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-----------NTLKLWDSKVVTPAII 233 (247)
Q Consensus 173 ~dg~i~v~d~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~ 233 (247)
.++.+.+|++. .+.....+ ..+...+..++|+|+|++|++++.+ +.|.+||.+..+...+
T Consensus 193 ~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 193 RTGQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp TTSSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred CCCCccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence 58888888875 33333333 3344567889999999999988865 5799999988765433
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=6.6e-23 Score=178.56 Aligned_cols=207 Identities=13% Similarity=0.179 Sum_probs=162.6
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CC-----eEEEEecCCCeEEEEEecccC------------------------CeEEEE
Q psy4393 27 TKAVSSVKFSPNGEWLASSSA-DK-----LIKIWGAYDGKFEKTISGHKL------------------------GISDVA 76 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~~-dg-----~v~iw~~~~~~~~~~~~~~~~------------------------~v~~~~ 76 (247)
...+.+++|+|||++|++++. |+ .|++||..+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999887 88 899999988887766655432 278899
Q ss_pred ECCCCCEEEEEcCCCeEEEEECCCce--EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCC
Q psy4393 77 WSSDSRLLVSGSDDKTLKIWELSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD 154 (247)
Q Consensus 77 ~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 154 (247)
|+|||++|++++. +.|++||+.++. ....+..+...+..+.|+|+|+.+++++ ++.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999998886 899999998872 3445666777899999999999999887 46899999998876554443333
Q ss_pred C----------------eEEEEECCCCCEEEEecCCC---------------------------------eEEEEeCCC-
Q psy4393 155 P----------------VSAVHFNRDGSLIVSSSYDG---------------------------------LCRIWDTAS- 184 (247)
Q Consensus 155 ~----------------i~~~~~~~~~~~l~~~~~dg---------------------------------~i~v~d~~~- 184 (247)
. +..+.|+|||++|++++.|+ .|.+||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 36789999999999887665 788999988
Q ss_pred ceeeeeecc-CCCCCeEEEEECCCCCEEEEEEc-----CCeEEEEECCCcceEEEEcc
Q psy4393 185 GQCLKTLID-DDNPPVSFVKFSPNGKYILAATL-----DNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 185 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~ 236 (247)
++....... .+...+..++| |||++|++++. +..|.+||..+++...+...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 330 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE 330 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc
Confidence 765443222 24456788999 99999998764 56899999998876655543
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=1.4e-21 Score=155.51 Aligned_cols=210 Identities=9% Similarity=0.065 Sum_probs=165.9
Q ss_pred CCeEEEEECCCCCEEEE-EeCCCeEEEEecCCCeEEEEEecccC---------CeEEEEECCCCCEEEEEc--CCCeEEE
Q psy4393 28 KAVSSVKFSPNGEWLAS-SSADKLIKIWGAYDGKFEKTISGHKL---------GISDVAWSSDSRLLVSGS--DDKTLKI 95 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~v 95 (247)
..+..++|+|+|++++. ...++.|.+||..+++....+..+.. .+..++|+|+++.+++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 45678999999996654 45579999999998888777765432 268899999999877665 4789999
Q ss_pred EECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC----CCCCeEEEEECCCCCEEEEe
Q psy4393 96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSS 171 (247)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~ 171 (247)
||..+++....+..+...+..+.|+|+++.+++++.++.+.+||+.+++....+.. +...+..++|+|+++.++++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 99999988877764555577889999999999999999999999999988777654 34467889999999977666
Q ss_pred cC-CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEccCCcc
Q psy4393 172 SY-DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICSTPLNL 240 (247)
Q Consensus 172 ~~-dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~ 240 (247)
+. ++.+.+||..+++....+..... ..++|+|++++++++. .++.|.+||..+.+.+..+..+..+
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 316 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHP 316 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEE
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCC
Confidence 54 58999999999887766544332 4588999999777666 6899999999988776666554433
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=2.5e-21 Score=154.01 Aligned_cols=210 Identities=9% Similarity=0.039 Sum_probs=167.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeC-------CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEE
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSA-------DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWE 97 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d 97 (247)
....+..++|+|+|+++++++. ++.|.+||..+++....+.. ...+..++|+|+++.+ ++...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3467889999999998887763 56899999998887777654 3346788999999965 4555679999999
Q ss_pred CCCceEEEEEecCCc---------cEEEEEEcCCCCEEEEee--CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC
Q psy4393 98 LSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS 166 (247)
Q Consensus 98 ~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 166 (247)
..+++....+..+.. ....+.|+|+++.+++++ .++.|.+||+.+++.+..+..+...+..++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 999988777765432 267899999999877765 478899999999998888775555678899999999
Q ss_pred EEEEecCCCeEEEEeCCCceeeeeeccC---CCCCeEEEEECCCCCEEEEEEcC-CeEEEEECCCcceEEEEcc
Q psy4393 167 LIVSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLD-NTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~ 236 (247)
.++++..++.+.+||+.+++....+... ....+..++|+|+++++++++.+ +.|.+||..+.+.+..+..
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 9999999999999999998877665431 23456779999999988877754 8999999988876655543
No 134
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=3.9e-21 Score=151.71 Aligned_cols=203 Identities=11% Similarity=0.084 Sum_probs=158.9
Q ss_pred CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEecc-----cCCeEEEEECCCCCEEEEEc------------CC
Q psy4393 29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGH-----KLGISDVAWSSDSRLLVSGS------------DD 90 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~------------~d 90 (247)
.+..++|+|+|++++ ++..++.|.+||..+++....+... ...+..++|+|+|+.++++. .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 478899999998765 5556789999999888877666532 12567889999999988885 57
Q ss_pred CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-----------------
Q psy4393 91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS----------------- 153 (247)
Q Consensus 91 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----------------- 153 (247)
+.|.+||+.+++....+.. ...+..+.|+|+++.++++ ++.+++||+.+++....+..+.
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 191 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ 191 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence 9999999998887776664 3446678899999988777 6889999998887654443221
Q ss_pred -------------------------------------------------CCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393 154 -------------------------------------------------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 184 (247)
Q Consensus 154 -------------------------------------------------~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 184 (247)
..+.+++|+|++++++++ ++.|.+||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~ 269 (337)
T 1pby_B 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence 123458999999998888 79999999999
Q ss_pred ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393 185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL 238 (247)
Q Consensus 185 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 238 (247)
++....+... ..+..++|+|+|++|++++.++.|.+||..+.+.+..+..+.
T Consensus 270 ~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 270 NASIKRVPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp TEEEEEEECS--SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred CcCcceecCC--CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 8876655433 345779999999999999999999999999988777766553
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=1.1e-20 Score=149.44 Aligned_cols=200 Identities=12% Similarity=0.245 Sum_probs=145.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCC-CeEEEEecC--CCeEE--EEEecccCCeEEEEECCCCCEEEEEc-CCCeEEEEEC
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAY--DGKFE--KTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWEL 98 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~d-g~v~iw~~~--~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~ 98 (247)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++... ..+..+. .+..++|+|+++.+++++ .++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 577789999999999998888776 899999987 44432 3343333 788999999999876665 4889999999
Q ss_pred C---CceEEEEEecCCccEEEEEEcCCCCEEEEee-CCCCEEEEECCC-CeEEE----eecC-CCCCeEEEEECCCCCEE
Q psy4393 99 S---SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRT-GKCLK----TLPA-HSDPVSAVHFNRDGSLI 168 (247)
Q Consensus 99 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~-~~~~~----~~~~-~~~~i~~~~~~~~~~~l 168 (247)
. ..+....+.. ...+.++.|+|+++.+++++ .++.|++||+.+ ++... .... ....+..++|+|+++++
T Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 114 EDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp ETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 4 3344444443 34577889999999888777 889999999987 54321 2222 23467889999999976
Q ss_pred EEe-cCCCeEEEEeCCC--cee--eeeec--c-C--CCCCeEEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393 169 VSS-SYDGLCRIWDTAS--GQC--LKTLI--D-D--DNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSK 226 (247)
Q Consensus 169 ~~~-~~dg~i~v~d~~~--~~~--~~~~~--~-~--~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 226 (247)
+++ ..++.+.+||+.. ++. ..... . . ....+..++|+|+|++|+++. .++.|.+||.+
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 554 4789999999953 332 11111 1 1 123456799999999888655 78999999998
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=2.3e-21 Score=163.19 Aligned_cols=200 Identities=14% Similarity=0.110 Sum_probs=161.6
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC--CCceEEEEEecCC
Q psy4393 34 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL--SSGKCLKTLKGHS 111 (247)
Q Consensus 34 ~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~--~~~~~~~~~~~~~ 111 (247)
+|+|++..+++++.++.|.+||..+++....+..+.. +..++|+|+|+++++++.++.|.+||+ .+++.+..+.. .
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence 4889998899999999999999999998888874333 889999999999999999999999999 78888887774 4
Q ss_pred ccEEEEEEcC----CCCEEEEee-CCCCEEEEECCCCeEEEeecCC-----------CCCeEEEEECCCCC-EEEEecCC
Q psy4393 112 NYVFCCNFNP----QSNLIVSGS-FDESVRIWDVRTGKCLKTLPAH-----------SDPVSAVHFNRDGS-LIVSSSYD 174 (247)
Q Consensus 112 ~~v~~~~~~~----~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~-~l~~~~~d 174 (247)
.....++|+| +++++++++ .++.|.+||..+++.+..+..+ ...+..+.++|++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 4578899999 999999887 4899999999999988877642 22688899999776 45666778
Q ss_pred CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEc
Q psy4393 175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 235 (247)
+.|.+||..+.+.+..........+..++|+|+|++|++++ .+++|.+||.++.+.+..+.
T Consensus 302 g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 99999999876544311112234456789999999887665 58999999999987666554
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=1.3e-20 Score=148.88 Aligned_cols=205 Identities=12% Similarity=0.099 Sum_probs=152.4
Q ss_pred EEecCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCeE-EEEEecccCCeEEEEECCCCCEEEEEcCCC---eEEEE
Q psy4393 22 TLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDSRLLVSGSDDK---TLKIW 96 (247)
Q Consensus 22 ~~~~h~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~v~ 96 (247)
.+..+...+ .++|+|+|+++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++ .|.+|
T Consensus 35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence 333445566 9999999997766655 88999999988876 666665555555599999999998655553 89999
Q ss_pred ECCCceEEEEEecCCccEEEEEEcCCCCEEEE-eeCCCC-EEEEECCCCeEE----EeecCCCCCeEEEEECCCCCEEEE
Q psy4393 97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDES-VRIWDVRTGKCL----KTLPAHSDPVSAVHFNRDGSLIVS 170 (247)
Q Consensus 97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~-i~v~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~ 170 (247)
|+.+++.+..+..+ .....+.|+|+++.+++ ...++. +.+|++.....+ ............++|+|+|+++++
T Consensus 114 d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 114 SFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp ETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred ECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 99998887776654 34688999999985554 455688 999998754322 111133445789999999996554
Q ss_pred -ecCCCeEEEEeCCCcee---eeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcce
Q psy4393 171 -SSYDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTP 230 (247)
Q Consensus 171 -~~~dg~i~v~d~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~ 230 (247)
+..++.|.+||+.+++. +..+.. ...+..++|+|||++|+++. .++.|.+||..+++.
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred EeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 55688999999998876 554432 23456799999999887765 477899999988765
No 138
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=9.5e-22 Score=161.30 Aligned_cols=200 Identities=11% Similarity=0.134 Sum_probs=147.2
Q ss_pred cCCCCeEEEEECCCCCEEE----EEeCCCeEEEEecCCC--------e---EEEEEecccCCeEEEEECCC-CCEEEEEc
Q psy4393 25 GHTKAVSSVKFSPNGEWLA----SSSADKLIKIWGAYDG--------K---FEKTISGHKLGISDVAWSSD-SRLLVSGS 88 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~----~~~~dg~v~iw~~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 88 (247)
.|...|.+++|+|+|++|+ +++.|+.|++||+.+. + ....+.+|...|.+++|+|+ +..+++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 3567899999999999999 7888999999997543 1 13345568889999999997 78999999
Q ss_pred CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC-------CCCeEEEEE
Q psy4393 89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-------SDPVSAVHF 161 (247)
Q Consensus 89 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~i~~~~~ 161 (247)
.||.|++||++++........|...+.+++|+|++++|++|+.||.|++||++ ++....+..+ ...+.++.|
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE
Confidence 99999999999887766667788899999999999999999999999999998 5555544433 237899999
Q ss_pred CCCCCEEEEe-cCCC------eEEEEeCCCcee-----eeeecc------CCCCCeEEEEECCCCCEEEEEEc-CCeEEE
Q psy4393 162 NRDGSLIVSS-SYDG------LCRIWDTASGQC-----LKTLID------DDNPPVSFVKFSPNGKYILAATL-DNTLKL 222 (247)
Q Consensus 162 ~~~~~~l~~~-~~dg------~i~v~d~~~~~~-----~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v 222 (247)
++++.++++. ..+| .+++|+++..+. ...+.. ....+...+..-++.+++++++. .+.|.|
T Consensus 249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~v 328 (434)
T 2oit_A 249 IGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSI 328 (434)
T ss_dssp EETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEE
T ss_pred ecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeE
Confidence 9988877543 3333 388999886421 111111 11122223334467677766654 455666
Q ss_pred EEC
Q psy4393 223 WDS 225 (247)
Q Consensus 223 wd~ 225 (247)
...
T Consensus 329 l~~ 331 (434)
T 2oit_A 329 LAR 331 (434)
T ss_dssp EEE
T ss_pred EEe
Confidence 653
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=2.7e-20 Score=147.23 Aligned_cols=196 Identities=14% Similarity=0.249 Sum_probs=139.0
Q ss_pred CCeEEEEECCCCCEEEEEeC-CCeEEEEecCCC---eEEEEEecccCCeEEEEECCCCCEEEEEc-CCCeEEEEECCC-c
Q psy4393 28 KAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWELSS-G 101 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~-~ 101 (247)
..+..++|+|+|++|++++. ++.|.+|+..++ .....+. ....+.+++|+|+++.+++++ .++.|.+||+.+ +
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 37889999999998876654 889999998433 2333333 234588899999999888776 889999999987 5
Q ss_pred eEEE----EEec-CCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCC--CeE--EEeec---CC---CCCeEEEEECCCC
Q psy4393 102 KCLK----TLKG-HSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRT--GKC--LKTLP---AH---SDPVSAVHFNRDG 165 (247)
Q Consensus 102 ~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~--~~~--~~~~~---~~---~~~i~~~~~~~~~ 165 (247)
+... .+.. ....+..+.|+|+++.++++ ..++.+++||+.. ++. ..... .. ...+..++|+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 4322 2222 23467789999999976555 4788999999953 322 22222 11 2356689999999
Q ss_pred CEEE-EecCCCeEEEEeCC--Cc--eeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393 166 SLIV-SSSYDGLCRIWDTA--SG--QCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSK 226 (247)
Q Consensus 166 ~~l~-~~~~dg~i~v~d~~--~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 226 (247)
++|+ ++..++.+.+||+. ++ +.+..+... ..+..++|+|+|++|++++ .++.|.+|+.+
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC--CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 8777 45578999999998 32 233332222 2367799999999999888 57999999543
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.9e-22 Score=175.21 Aligned_cols=203 Identities=10% Similarity=0.122 Sum_probs=155.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccC---CeEEEEECCCCCEEEEEcCC---------CeEEEE
Q psy4393 29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSRLLVSGSDD---------KTLKIW 96 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~v~ 96 (247)
.+.+++|+|||+++++ +.||.|++||..+++....+..+.. .+.+++|+|||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997766 7899999999998887777776654 48999999999999988764 788899
Q ss_pred ECCCceEEEEEec---CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCe-----------------
Q psy4393 97 ELSSGKCLKTLKG---HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV----------------- 156 (247)
Q Consensus 97 d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i----------------- 156 (247)
|+.+++. ..+.. +...+..+.|+|+|+.+++++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 9998875 33332 3334777899999999999876 789999999887665544433333
Q ss_pred -EEEEECCCCCEEEEecCCC----------------------------------eEEEEeCCCceeeeeeccC-----CC
Q psy4393 157 -SAVHFNRDGSLIVSSSYDG----------------------------------LCRIWDTASGQCLKTLIDD-----DN 196 (247)
Q Consensus 157 -~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~~~~~~~~~-----~~ 196 (247)
.+++|+|||+.|++++.++ .+.+||+.+++....+... +.
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999998876543 7999999887754443322 13
Q ss_pred CCeEEEEECCCCCEEEEEEc----CCeEEEEECCCcceEEEE
Q psy4393 197 PPVSFVKFSPNGKYILAATL----DNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 197 ~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~ 234 (247)
..+..++|+|||++|++... +..|.+||..+++...+.
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 45788999999999877653 358999999887765543
No 141
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=5.9e-20 Score=154.58 Aligned_cols=207 Identities=11% Similarity=0.044 Sum_probs=158.0
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEec--CCCeEEEEEecccCCeEEEEECC----CCCEEEEEcC-CCeEEEEECCCce
Q psy4393 30 VSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSS----DSRLLVSGSD-DKTLKIWELSSGK 102 (247)
Q Consensus 30 v~~~~~s~~~~~l~~~~~dg~v~iw~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~v~d~~~~~ 102 (247)
+..++|+|+|++|++++.++.|.+||. .+++....+.. ...+..++|+| +|+++++++. ++.|.+||..+++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 889999999999999999999999999 77777777763 45678999999 9999988874 8999999999998
Q ss_pred EEEEEecC-----------CccEEEEEEcCCCCE-EEEeeCCCCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEE
Q psy4393 103 CLKTLKGH-----------SNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLI 168 (247)
Q Consensus 103 ~~~~~~~~-----------~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l 168 (247)
.+..+... ...+..+.++|++.. +++...++.|.+||+.+.+.+. .+. +...+..+.|+|+++++
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEE
Confidence 88777542 226788999997654 5566778999999998765433 333 34456788999999977
Q ss_pred EEe-cCCCeEEEEeCCCceeeeeeccC---CCCCeEEEEECCC-CCEEEEEE-cCCeEEEEECCC-------cceEEEEc
Q psy4393 169 VSS-SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPN-GKYILAAT-LDNTLKLWDSKV-------VTPAIICS 235 (247)
Q Consensus 169 ~~~-~~dg~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~s~~-~~~l~~~~-~dg~i~vwd~~~-------~~~~~~~~ 235 (247)
+++ ..++.|.+||+.+++....+... +......+ ++|+ ++.++++. .|++|.|||... .+.+..+.
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence 655 45889999999999887766432 22222223 4777 55566665 579999999987 66666665
Q ss_pred cCCc
Q psy4393 236 TPLN 239 (247)
Q Consensus 236 ~~~~ 239 (247)
.+..
T Consensus 418 ~~g~ 421 (543)
T 1nir_A 418 GQGG 421 (543)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 5443
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=4e-20 Score=146.00 Aligned_cols=205 Identities=14% Similarity=0.167 Sum_probs=150.7
Q ss_pred EEECCCCCE-EEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC-CCeEEEEECCCceE-EEEEec
Q psy4393 33 VKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWELSSGKC-LKTLKG 109 (247)
Q Consensus 33 ~~~s~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~-~~~~~~ 109 (247)
..|.+++++ ++++..++.|.+||..+++....+..+.... .++|+|+++++++++. ++.|.+||..+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 456666665 5677788999999999988877776655556 9999999997666555 88999999998886 666666
Q ss_pred CCccEEEEEEcCCCCEEEEeeCCC---CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCe-EEEEeCCC
Q psy4393 110 HSNYVFCCNFNPQSNLIVSGSFDE---SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGL-CRIWDTAS 184 (247)
Q Consensus 110 ~~~~v~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i~v~d~~~ 184 (247)
+.....++.|+|++++++++..++ .|++||+.+++.+..+..+. ...+++|+|+|++++++ ..++. +.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 655555489999999999665553 89999999998887776543 46899999999865554 45577 99999875
Q ss_pred ceee----eeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcce---EEEEccCCcc
Q psy4393 185 GQCL----KTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTP---AIICSTPLNL 240 (247)
Q Consensus 185 ~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~---~~~~~~~~~~ 240 (247)
...+ .... ........++|+|+|+++++++ .++.|.+||.++.+. +..+.....+
T Consensus 161 ~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 223 (331)
T 3u4y_A 161 DGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLP 223 (331)
T ss_dssp TCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCC
T ss_pred CCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCC
Confidence 3322 1111 2234568899999999776665 588999999988776 5555544333
No 143
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=3.2e-20 Score=147.28 Aligned_cols=201 Identities=14% Similarity=0.101 Sum_probs=153.3
Q ss_pred CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEeccc------CCeEEEEECCCCCEEEEEcCC-----------
Q psy4393 29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHK------LGISDVAWSSDSRLLVSGSDD----------- 90 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d----------- 90 (247)
.+..++|+|+|++++ ++..++.|.+||..+++....+.... ..+..++|+|+|+++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 578899999998665 45568999999998888776665322 236789999999999988865
Q ss_pred -CeEEEEECCCceE---EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-------------
Q psy4393 91 -KTLKIWELSSGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS------------- 153 (247)
Q Consensus 91 -~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~------------- 153 (247)
+.|.+||+.+++. +..+.. ...+.+++|+|+++ +++++ +.|++||+.+++....+..+.
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred CCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcccee
Confidence 8999999987432 233333 33577888999999 55543 349999999887766554321
Q ss_pred -------------------------------------------------------CCeEEEEECC-CCCEEEEecCCCeE
Q psy4393 154 -------------------------------------------------------DPVSAVHFNR-DGSLIVSSSYDGLC 177 (247)
Q Consensus 154 -------------------------------------------------------~~i~~~~~~~-~~~~l~~~~~dg~i 177 (247)
..+..++++| ++++++++ ++.|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v 277 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL 277 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE
T ss_pred eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE
Confidence 1344667789 99998888 8899
Q ss_pred EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
.+||+.+++....+.... .+..++|+|++++|++++.++.|.+||.++.+.+..+..+
T Consensus 278 ~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEETTTTEEEEEEECSS--CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEECccCeEEEEEcCCC--CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 999999988766654332 3567999999999999888999999999998877777665
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=3.8e-19 Score=141.42 Aligned_cols=202 Identities=15% Similarity=0.182 Sum_probs=141.6
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCeE--EEEEecccCCeEEEEECCCCCEEEEEc-CCCeEEEEE
Q psy4393 24 AGHTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWE 97 (247)
Q Consensus 24 ~~h~~~v~~~~~s~~~~~l~~~~~---dg~v~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d 97 (247)
..+...+..++|+|+|+ |++++. ++.|.+|++.++.. ...+..+...+..++|+|+|+++++++ .++.+.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34556778899999999 555544 68999999976653 233344566788999999999888877 689999999
Q ss_pred CCC-ce--EEEEEecC---------CccEEEEEEcCCCCEEEEeeCCCCEEEEECC-CCeEE--EeecCC-CCCeEEEEE
Q psy4393 98 LSS-GK--CLKTLKGH---------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVR-TGKCL--KTLPAH-SDPVSAVHF 161 (247)
Q Consensus 98 ~~~-~~--~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~--~~~~~~-~~~i~~~~~ 161 (247)
+.. +. .+..+... ...+.++.|+|+++++++...++.+++||+. +++.. ..+... ......++|
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 963 22 22333211 1247789999999966666778899999998 45432 222222 235778999
Q ss_pred CCCCCEEEE-ecCCCeEEEEeCCC--ceee--eeeccCC-----CCCeEEEEECCCCCEEEE-EEcCCeEEEEECC
Q psy4393 162 NRDGSLIVS-SSYDGLCRIWDTAS--GQCL--KTLIDDD-----NPPVSFVKFSPNGKYILA-ATLDNTLKLWDSK 226 (247)
Q Consensus 162 ~~~~~~l~~-~~~dg~i~v~d~~~--~~~~--~~~~~~~-----~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~ 226 (247)
+|+|+++++ ...++.+.+|++.. ++.. ....... ......++|+|||++|++ ...++.|.+||.+
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 999996655 56688999998764 4422 1211111 134778999999998855 4568999999986
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=4.9e-19 Score=140.80 Aligned_cols=207 Identities=13% Similarity=0.186 Sum_probs=142.6
Q ss_pred ecCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecC-CCeE--EEEEecc---------cCCeEEEEECCCCCEEEEEcCC
Q psy4393 24 AGHTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAY-DGKF--EKTISGH---------KLGISDVAWSSDSRLLVSGSDD 90 (247)
Q Consensus 24 ~~h~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~-~~~~--~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d 90 (247)
..+...+..++|+|+|++|++++ .++.+.+|++. ++.. ...+... ...+.+++|+|+|+.+++...+
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~ 161 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS 161 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence 34667788999999999888877 67899999985 3332 2222211 1237889999999966677778
Q ss_pred CeEEEEECC-CceEEE--EEec-CCccEEEEEEcCCCCEEEE-eeCCCCEEEEECCC--CeE--EEeecCCC------CC
Q psy4393 91 KTLKIWELS-SGKCLK--TLKG-HSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVRT--GKC--LKTLPAHS------DP 155 (247)
Q Consensus 91 ~~i~v~d~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~--~~~--~~~~~~~~------~~ 155 (247)
+.|.+|++. +++... .+.. .......++|+|+++++++ ...++.+++|++.. ++. +..+.... ..
T Consensus 162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNG 241 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCE
T ss_pred CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCc
Confidence 899999998 444322 2222 2235678999999996655 56678899999874 442 22222222 34
Q ss_pred eEEEEECCCCCEEE-EecCCCeEEEEeCCCc---eeeeeeccCCCCCeEEEEECCCCCEEEEEEcC-CeEEEE--ECCCc
Q psy4393 156 VSAVHFNRDGSLIV-SSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW--DSKVV 228 (247)
Q Consensus 156 i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vw--d~~~~ 228 (247)
+..++|+|+|++|+ +...++.|.+||+... +.+..+.. +...+..++|+|||++|++++.+ +.|.+| |..++
T Consensus 242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp EEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 78899999999775 4556899999998732 22333222 23345789999999999988865 899999 44455
Q ss_pred ceE
Q psy4393 229 TPA 231 (247)
Q Consensus 229 ~~~ 231 (247)
+..
T Consensus 321 ~l~ 323 (347)
T 3hfq_A 321 KLS 323 (347)
T ss_dssp CEE
T ss_pred eEE
Confidence 443
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=9.6e-21 Score=164.49 Aligned_cols=201 Identities=10% Similarity=0.143 Sum_probs=146.9
Q ss_pred EEecCCC---CeEEEEECCCCCEEEEEeCC---------CeEEEEecCCCeEEEEEec---ccCCeEEEEECCCCCEEEE
Q psy4393 22 TLAGHTK---AVSSVKFSPNGEWLASSSAD---------KLIKIWGAYDGKFEKTISG---HKLGISDVAWSSDSRLLVS 86 (247)
Q Consensus 22 ~~~~h~~---~v~~~~~s~~~~~l~~~~~d---------g~v~iw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~ 86 (247)
.+..|.. .|.+++|||||++|++++.+ +.+.+||..+++. ..+.. +...+..++|+|||+.|+.
T Consensus 52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~ 130 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF 130 (723)
T ss_dssp EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE
T ss_pred EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEE
Confidence 3444543 49999999999999988764 7888999988765 33332 2334788999999999998
Q ss_pred EcCCCeEEEEECCCceEEEEEecCCcc------------------EEEEEEcCCCCEEEEeeCCC---------------
Q psy4393 87 GSDDKTLKIWELSSGKCLKTLKGHSNY------------------VFCCNFNPQSNLIVSGSFDE--------------- 133 (247)
Q Consensus 87 ~~~d~~i~v~d~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~l~~~~~d~--------------- 133 (247)
++. +.|++||+.+++.......+... +..+.|+|+|+.|++++.++
T Consensus 131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 876 79999999988766554443322 26799999999999887543
Q ss_pred -------------------CEEEEECCCCeEEEeecCC------CCCeEEEEECCCCCEEEEecC----CCeEEEEeCCC
Q psy4393 134 -------------------SVRIWDVRTGKCLKTLPAH------SDPVSAVHFNRDGSLIVSSSY----DGLCRIWDTAS 184 (247)
Q Consensus 134 -------------------~i~v~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~ 184 (247)
.|++||+.+++....+..+ ...+..++|+|||+++++... +..|.+||+.+
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence 7999999888755555543 456889999999998876643 35799999998
Q ss_pred ceeeeeeccCCCCCe----EEEEECCCCCEEEEE--EcCC------eEEEEE
Q psy4393 185 GQCLKTLIDDDNPPV----SFVKFSPNGKYILAA--TLDN------TLKLWD 224 (247)
Q Consensus 185 ~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~--~~dg------~i~vwd 224 (247)
++....+...+...+ ..++|+|||+.|+.. ..++ .|.+||
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 876554432222222 267899999988764 4566 577777
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=1.8e-19 Score=142.97 Aligned_cols=201 Identities=13% Similarity=0.088 Sum_probs=150.1
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEeccc-CCeEEEEECCCCCEEE-EEcCCCeEEEEECCCceEEEEEec
Q psy4393 32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTLKG 109 (247)
Q Consensus 32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~ 109 (247)
.+++++++.++++++.++.|.+||..+++....+..+. ..+..++|+|+++.++ +...++.|.+||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45688889999999999999999999888877776443 2577899999998654 556789999999999887766653
Q ss_pred CC------ccEEEEEEcCCCCEEEEeeCC------------CCEEEEECCCCeE---EEeecCCCCCeEEEEECCCCCEE
Q psy4393 110 HS------NYVFCCNFNPQSNLIVSGSFD------------ESVRIWDVRTGKC---LKTLPAHSDPVSAVHFNRDGSLI 168 (247)
Q Consensus 110 ~~------~~v~~~~~~~~~~~l~~~~~d------------~~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l 168 (247)
.. ..+..+.|+|+++.+++++.+ +.|.+||+.+++. +..+.. ...+.+++|+|+++ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-E
Confidence 22 225678999999999988865 8999999987442 233333 33578889999999 5
Q ss_pred EEecCCCeEEEEeCCCceeeeeeccCC-----------------------------------------------------
Q psy4393 169 VSSSYDGLCRIWDTASGQCLKTLIDDD----------------------------------------------------- 195 (247)
Q Consensus 169 ~~~~~dg~i~v~d~~~~~~~~~~~~~~----------------------------------------------------- 195 (247)
++++. .+.+||+.+++....+....
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 55543 49999998887655442221
Q ss_pred --------------CCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393 196 --------------NPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVVTPAIICSTPL 238 (247)
Q Consensus 196 --------------~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 238 (247)
...+..++|+| ++++++++ ++.|.+||.++.+.+..+..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~ 295 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH 295 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC
Confidence 01234567889 99999888 8999999999887766655443
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=5.6e-21 Score=166.41 Aligned_cols=195 Identities=12% Similarity=0.078 Sum_probs=148.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393 29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT 106 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 106 (247)
.|.+++|+|||++|++++. +.|.+||..++. ....+..+...+..++|+|||+.|+.++ ++.|++||+.+++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence 3789999999999998875 999999998762 3344556667899999999999998887 46899999998776544
Q ss_pred EecCCcc----------------EEEEEEcCCCCEEEEeeCCC---------------------------------CEEE
Q psy4393 107 LKGHSNY----------------VFCCNFNPQSNLIVSGSFDE---------------------------------SVRI 137 (247)
Q Consensus 107 ~~~~~~~----------------v~~~~~~~~~~~l~~~~~d~---------------------------------~i~v 137 (247)
...+... +..+.|+|+|+.|++++.|+ .|++
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 3333221 36689999999999987665 7889
Q ss_pred EECCC-CeEEEeec--CCCCCeEEEEECCCCCEEEEecC-----CCeEEEEeCCCceeeeeeccCCCC---CeEEEEECC
Q psy4393 138 WDVRT-GKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFSP 206 (247)
Q Consensus 138 ~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~---~v~~~~~s~ 206 (247)
||+.+ ++...... .+...+..++| |||+.|++++. +..|.+||+.+++....+...... .+..++|+|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 99988 76544332 35667899999 99999887653 467999999988765544332221 345689999
Q ss_pred CCCEEEEEEcCCeEEEEECC
Q psy4393 207 NGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 207 ~~~~l~~~~~dg~i~vwd~~ 226 (247)
||+++++++.||.++||..+
T Consensus 347 dg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TSCEEEEECTTSSCEEEEEC
T ss_pred CCeEEEEecCCCccEEEEEc
Confidence 99988888889977777654
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=1.4e-20 Score=145.45 Aligned_cols=189 Identities=20% Similarity=0.240 Sum_probs=140.6
Q ss_pred CCCeEEEEECCCCCEEEEEe--CCCeEEEEe--cCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEEC--C
Q psy4393 27 TKAVSSVKFSPNGEWLASSS--ADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWEL--S 99 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~--~dg~v~iw~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~--~ 99 (247)
...+.+++|+|+|++|++++ .++...+|. ..++. ...+.. ...+..++|+|+++.++ ++..++.+.+|++ .
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 36788999999999999888 334555554 44443 233333 33488899999999877 7778898899985 3
Q ss_pred CceEEEEEecCCccEEEEEEcCCCCEEEEee-CCCCEEEEECC-CCeEEEeecCCCCCeEEEEECCCCCEEEEecCC---
Q psy4393 100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVR-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD--- 174 (247)
Q Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--- 174 (247)
++. ...+..+...+.++.|+|+++.+++++ .++.+++|++. .+..+..+..+...+..++|+|++++|++++.+
T Consensus 162 ~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 240 (297)
T 2ojh_A 162 SGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADV 240 (297)
T ss_dssp TCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTC
T ss_pred CCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCC
Confidence 333 345666777889999999999887765 58899999886 455566777777788999999999999888765
Q ss_pred --------CeEEEEeCCCceeeeeec-cCCCCCeEEEEECCCCCEEEEEEcCC
Q psy4393 175 --------GLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDN 218 (247)
Q Consensus 175 --------g~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg 218 (247)
+.+.+||+.+++...... ..+...+..++|+|++++|++++.+.
T Consensus 241 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 241 FDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 569999998876533221 13345677789999999999887653
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=2.5e-20 Score=168.03 Aligned_cols=197 Identities=12% Similarity=0.097 Sum_probs=162.6
Q ss_pred CCCCeEEEEEC-CCCCEEEEEeCCCeEEEEecCCCeEEEEEecccC-CeEEEEECCCCCEEEEEcCCCeEE-EEECCCce
Q psy4393 26 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSRLLVSGSDDKTLK-IWELSSGK 102 (247)
Q Consensus 26 h~~~v~~~~~s-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-v~d~~~~~ 102 (247)
|...+.+++|+ |+|++|++++ ++.+.+|+...+... .+..+.. .+..++|+ +|+.++.++.+..+. +|+..+++
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence 44578999999 9999998877 789999998776644 3555555 78999999 999999988888888 99998776
Q ss_pred EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC-------
Q psy4393 103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG------- 175 (247)
Q Consensus 103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------- 175 (247)
.. .+..+...+..++|+|+++.+++++.++.+++||+.+++.......|...+..++|+|||++|++++.++
T Consensus 371 ~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 371 AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 449 (1045)
T ss_dssp EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred ce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence 54 3446667889999999999999999999999999999987777767888889999999999998877644
Q ss_pred ---eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393 176 ---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 176 ---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
.+++||+.+++ ...+ ..+...+..++|+|||++|+.++.++...+|+....
T Consensus 450 ~~~~i~l~d~~~g~-~~~l-~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 450 VMQAIHVYDMEGRK-IFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp CEEEEEEEETTTTE-EEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred CCCeEEEEECCCCc-EEEe-eCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence 89999999877 3333 334456778999999999999999888888986543
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=3e-20 Score=161.04 Aligned_cols=195 Identities=12% Similarity=0.134 Sum_probs=147.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC-----ce
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-----GK 102 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-----~~ 102 (247)
..|.+++|+|| +.++.+ .++.+++||..+++... +..+...+..++|+|||+.|+++ .++.|++||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 655554 46999999998876544 44455668889999999999885 679999999988 76
Q ss_pred EEEEEecCCcc--------------EEEEEEcCCCCEEEEee---------------------------------CCCCE
Q psy4393 103 CLKTLKGHSNY--------------VFCCNFNPQSNLIVSGS---------------------------------FDESV 135 (247)
Q Consensus 103 ~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d~~i 135 (247)
.......+... +.++.|+|+|+.|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 55433333322 36789999999999987 34679
Q ss_pred EEEECCCCeEEEeec--CCCCCeEEEEECCCCCEEEEecCCC-----eEEEEeCCCceeeeeecc-CCC---CCeEEEEE
Q psy4393 136 RIWDVRTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWDTASGQCLKTLID-DDN---PPVSFVKF 204 (247)
Q Consensus 136 ~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~-~~~---~~v~~~~~ 204 (247)
++||+.+++...... .+...+..++|+|||+.|++++.++ .|.+||+.+++....+.. ... ..+..++|
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 999999887644432 3556789999999999998877665 899999998833333321 111 12356789
Q ss_pred CC--CCCEEEEEEcCCeEEEEECC
Q psy4393 205 SP--NGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 205 s~--~~~~l~~~~~dg~i~vwd~~ 226 (247)
+| ||++++++..||.++||+.+
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCCEEEEEEccCCccEEEEEE
Confidence 99 99999999999999999765
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=6.7e-19 Score=138.87 Aligned_cols=194 Identities=13% Similarity=0.151 Sum_probs=148.3
Q ss_pred CEEEEEeCCCeEEEEecCCCeEEEEEecccC--CeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEEEEecCC-----
Q psy4393 40 EWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKGHS----- 111 (247)
Q Consensus 40 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~----- 111 (247)
+++++++.++.|.+||..+++....+..... .+..++|+|+++.+ +++..++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4788899999999999998888777653332 47889999999865 556668899999999988776665321
Q ss_pred ccEEEEEEcCCCCEEEEee------------CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393 112 NYVFCCNFNPQSNLIVSGS------------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 179 (247)
Q Consensus 112 ~~v~~~~~~~~~~~l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 179 (247)
..+..+.|+|+++.++++. .++.|.+||+.+++.+..+.. ...+..++|+|++++++++ ++.+.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 1455789999999888875 578999999999887777665 3456778999999988877 688999
Q ss_pred EeCCCceeeeeeccCC----------------------------------------------------------------
Q psy4393 180 WDTASGQCLKTLIDDD---------------------------------------------------------------- 195 (247)
Q Consensus 180 ~d~~~~~~~~~~~~~~---------------------------------------------------------------- 195 (247)
||+.+++....+....
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 238 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence 9998877554332111
Q ss_pred -CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393 196 -NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL 238 (247)
Q Consensus 196 -~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 238 (247)
...+..++|+|++++|+++ ++.|.+||.++.+.+..+..+.
T Consensus 239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~ 280 (337)
T 1pby_B 239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH 280 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS
T ss_pred CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC
Confidence 0123458999999999988 7999999999887766655443
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=6.6e-20 Score=158.91 Aligned_cols=205 Identities=18% Similarity=0.286 Sum_probs=149.4
Q ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-----CeEEEEEecccCC--------------eEEEEECCCCCE
Q psy4393 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLG--------------ISDVAWSSDSRL 83 (247)
Q Consensus 23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~ 83 (247)
+..+...+.+++|+|||++|+.+ .++.|++|+..+ ++.......+... +.++.|+|||++
T Consensus 116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~ 194 (706)
T 2z3z_A 116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC 194 (706)
T ss_dssp EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence 34566778899999999999885 689999999987 6655443333332 478999999999
Q ss_pred EEEEc---------------------------------CCCeEEEEECCCceEEEEEe--cCCccEEEEEEcCCCCEEEE
Q psy4393 84 LVSGS---------------------------------DDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVS 128 (247)
Q Consensus 84 l~~~~---------------------------------~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~ 128 (247)
|++++ .+..|.+||+.+++...... .+...+..+.|+|+++.+++
T Consensus 195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 274 (706)
T 2z3z_A 195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV 274 (706)
T ss_dssp EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence 99887 44679999999887544332 34567889999999999998
Q ss_pred eeCCC-----CEEEEECCCCeEEEeec--CCC---CCeEEEEECC--CCCEEEEecCCCeEEEEeCC-CceeeeeeccCC
Q psy4393 129 GSFDE-----SVRIWDVRTGKCLKTLP--AHS---DPVSAVHFNR--DGSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDD 195 (247)
Q Consensus 129 ~~~d~-----~i~v~d~~~~~~~~~~~--~~~---~~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~ 195 (247)
++.++ .|++||+.+++....+. .+. ..+..+.|+| +|++++++..++.+++|++. +++....+. .+
T Consensus 275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~-~~ 353 (706)
T 2z3z_A 275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT-KG 353 (706)
T ss_dssp EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-CS
T ss_pred EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-CC
Confidence 87765 89999999883333221 111 1245689999 99999999899988888765 444444443 33
Q ss_pred CCCeEE-EEECCCCCEEEEEEcC-C----eEEEEECCCcc
Q psy4393 196 NPPVSF-VKFSPNGKYILAATLD-N----TLKLWDSKVVT 229 (247)
Q Consensus 196 ~~~v~~-~~~s~~~~~l~~~~~d-g----~i~vwd~~~~~ 229 (247)
...+.. ++|+|+++.|+.++.+ + .|..||..+..
T Consensus 354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 445655 7999999988776654 3 67777766544
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=3.8e-19 Score=160.40 Aligned_cols=199 Identities=13% Similarity=0.087 Sum_probs=158.0
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC----------eE
Q psy4393 24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK----------TL 93 (247)
Q Consensus 24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------~i 93 (247)
.+|...+..++|+|||++|++++.++.|++||..+++.......+...+..++|+|||++|++++.++ .|
T Consensus 375 ~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i 454 (1045)
T 1k32_A 375 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 454 (1045)
T ss_dssp CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence 36778899999999999999999999999999998888777777888899999999999998876644 89
Q ss_pred EEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE----------------------------
Q psy4393 94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---------------------------- 145 (247)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------------------------- 145 (247)
++||+.+++ ...+..+...+..+.|+|+|+.+++++.++...+|+......
T Consensus 455 ~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1045)
T 1k32_A 455 HVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 533 (1045)
T ss_dssp EEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred EEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcc
Confidence 999999877 566777777788899999999999998877766665432211
Q ss_pred ---------------EEeecCCCCCeEEEEECCCCCEEEE-------------ecCCCeEEEEeCCCceeeeeeccCCCC
Q psy4393 146 ---------------LKTLPAHSDPVSAVHFNRDGSLIVS-------------SSYDGLCRIWDTASGQCLKTLIDDDNP 197 (247)
Q Consensus 146 ---------------~~~~~~~~~~i~~~~~~~~~~~l~~-------------~~~dg~i~v~d~~~~~~~~~~~~~~~~ 197 (247)
+..+..+.+.+..+.++|++.++++ ......+.+||+.+++... +. .
T Consensus 534 ~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~----~ 608 (1045)
T 1k32_A 534 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK----N 608 (1045)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE----E
T ss_pred ccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee----c
Confidence 1223335567889999999987775 1124578899998877432 22 4
Q ss_pred CeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 198 PVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 198 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
.+..++|||||++|++++.+ .|++||....+
T Consensus 609 ~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 609 NLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred CcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 57789999999999998866 89999998765
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=7.6e-20 Score=155.31 Aligned_cols=196 Identities=12% Similarity=0.089 Sum_probs=141.2
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCeEEEEEeccc-CCeEEEEECCCCCEEEEEcC---CCeEEEEECCC-
Q psy4393 27 TKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLVSGSD---DKTLKIWELSS- 100 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~- 100 (247)
..+|.+++|+|||++||.++. +|.+++|++.++.. ..+..+. ..+..++|+|| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 467999999999999998776 99999999865554 4444444 57899999999 66776654 44455554432
Q ss_pred --ceEEEEEecCCccEEEEEEcCCCCE-EEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC---
Q psy4393 101 --GKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD--- 174 (247)
Q Consensus 101 --~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--- 174 (247)
+... .+.... .....+|+|+++. +++.+.++.+.+||+.+++.......+ . .+++|+|||+++++++.+
T Consensus 99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETT
T ss_pred CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCC
Confidence 2222 333222 2335578887753 334444555669999988754443322 2 678999999999987766
Q ss_pred -CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC--eEEEEECCCcceE
Q psy4393 175 -GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN--TLKLWDSKVVTPA 231 (247)
Q Consensus 175 -g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~ 231 (247)
+.|.+||+.+++.. .+ ..+...+..++|+|||++|+++..++ .|++||..++++.
T Consensus 174 ~~~i~~~d~~~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEEEEETTTCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred CeEEEEEcCCCCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 78999999888754 33 34455678999999999999888888 8999999988776
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=2.4e-17 Score=131.72 Aligned_cols=199 Identities=14% Similarity=0.223 Sum_probs=137.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCC----CeEEEEecCC--CeEEE--EEecccCCeEEEEECCCCCEEEEEc-CCCeEEEE
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSAD----KLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIW 96 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~d----g~v~iw~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~ 96 (247)
+...+..++|+|+|++|++++.+ +.+.+|++.. +.... ....+......+++ +++++++++ .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677789999999999988875 7999998764 44322 23334445677777 788776665 57899999
Q ss_pred ECCCceEEEEE------ec--------CCccEEEEEEcCCCCEEEEee-CCCCEEEEECCCCeE------E-------Ee
Q psy4393 97 ELSSGKCLKTL------KG--------HSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKC------L-------KT 148 (247)
Q Consensus 97 d~~~~~~~~~~------~~--------~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~------~-------~~ 148 (247)
++.....+..+ .+ +...+.++.|+|+++.+++++ .++.+++|++..... + ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754322111 11 122357799999999665554 578999998875331 1 11
Q ss_pred ecCCCCCeEEEEECCCCCEEEEec-CCCeEEEEeCCCceee--eeec--cCCCCCeEEEEECCCCCEEEEEEcC--CeEE
Q psy4393 149 LPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQCL--KTLI--DDDNPPVSFVKFSPNGKYILAATLD--NTLK 221 (247)
Q Consensus 149 ~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~--~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~ 221 (247)
..........++|+|+|+++++++ .++.|.+||+.+++.. .... .........++|+|||++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 223344578899999999887766 6899999999876542 2221 1222345789999999999877755 8999
Q ss_pred EEECC
Q psy4393 222 LWDSK 226 (247)
Q Consensus 222 vwd~~ 226 (247)
+|+.+
T Consensus 286 v~~~~ 290 (361)
T 3scy_A 286 IFKVD 290 (361)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99986
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=2e-17 Score=132.27 Aligned_cols=197 Identities=14% Similarity=0.195 Sum_probs=134.8
Q ss_pred CCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCeEEE----EEe--c--------ccCCeEEEEECCCCCEEEEEc-C
Q psy4393 26 HTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEK----TIS--G--------HKLGISDVAWSSDSRLLVSGS-D 89 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~----~~~--~--------~~~~v~~~~~~~~~~~l~~~~-~ 89 (247)
+......+++ ++++|++++ .++.+.+|++....... ... + +...+.+++|+|+|+++++++ .
T Consensus 98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 4456677777 788777665 57899999986432211 111 1 122357899999999765554 5
Q ss_pred CCeEEEEECCCceE------E-------EEEecCCccEEEEEEcCCCCEEEEee-CCCCEEEEECCCCeE--EEee---c
Q psy4393 90 DKTLKIWELSSGKC------L-------KTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKC--LKTL---P 150 (247)
Q Consensus 90 d~~i~v~d~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~--~~~~---~ 150 (247)
++.+.+|++..... + ............+.|+|+++++++++ .++.|.+||+.+++. +..+ .
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~ 255 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT 255 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence 78999998875331 1 11122344567899999999887776 688999999987754 2222 2
Q ss_pred CCCCCeEEEEECCCCCEEEEecCC--CeEEEEeCC--Cce--eeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEE
Q psy4393 151 AHSDPVSAVHFNRDGSLIVSSSYD--GLCRIWDTA--SGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLW 223 (247)
Q Consensus 151 ~~~~~i~~~~~~~~~~~l~~~~~d--g~i~v~d~~--~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw 223 (247)
.+......++|+|+|++|+++..+ +.+.+|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|
T Consensus 256 ~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 256 VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIF 333 (361)
T ss_dssp SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence 233456799999999988776654 899999985 344 2222222 33457899999999999888 56899997
Q ss_pred ECC
Q psy4393 224 DSK 226 (247)
Q Consensus 224 d~~ 226 (247)
+.+
T Consensus 334 ~~d 336 (361)
T 3scy_A 334 ERD 336 (361)
T ss_dssp EEC
T ss_pred EEE
Confidence 554
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=2e-18 Score=139.16 Aligned_cols=212 Identities=11% Similarity=0.039 Sum_probs=151.0
Q ss_pred EEEEecCCCCeEE-----EEECCCCCEEEEEeC-CC--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393 20 KFTLAGHTKAVSS-----VKFSPNGEWLASSSA-DK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK 91 (247)
Q Consensus 20 ~~~~~~h~~~v~~-----~~~s~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 91 (247)
...+..|...... .+|+|||++|+.++. +| .|.+||..+++.......+...+..+.|+|||+.|+.++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 3445566655555 789999999988776 66 488888888776665555554455678999999999999999
Q ss_pred eEEEEECCCceEEEEEecCCccEEEE--EEcCCCCEEEEe----------------------eCCCCEEEEECCCCeEEE
Q psy4393 92 TLKIWELSSGKCLKTLKGHSNYVFCC--NFNPQSNLIVSG----------------------SFDESVRIWDVRTGKCLK 147 (247)
Q Consensus 92 ~i~v~d~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~----------------------~~d~~i~v~d~~~~~~~~ 147 (247)
.+++||+.+++.......+...+... .++|++..++.. ..+..|.+||+.+++..
T Consensus 103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~- 181 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST- 181 (388)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-
T ss_pred eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-
Confidence 99999999988766565555544333 348999988742 23467999999988653
Q ss_pred eecCCCCCeEEEEECC-CCCEEEEecCC------CeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEc-CC
Q psy4393 148 TLPAHSDPVSAVHFNR-DGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATL-DN 218 (247)
Q Consensus 148 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~-dg 218 (247)
.+..+...+..+.|+| +|+.|+....+ ..|.++|...++.. .+..... ..+..++|+|||+.|+..+. ++
T Consensus 182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKG 260 (388)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCC
Confidence 3334456788999999 99988776643 37888888765433 2322222 24677899999998876553 22
Q ss_pred ----eEEEEECCCcceEEE
Q psy4393 219 ----TLKLWDSKVVTPAII 233 (247)
Q Consensus 219 ----~i~vwd~~~~~~~~~ 233 (247)
.|.+||..+++...+
T Consensus 261 ~~~~~l~~~d~~~g~~~~l 279 (388)
T 3pe7_A 261 SPDRFIYSADPETLENRQL 279 (388)
T ss_dssp CCCEEEEEECTTTCCEEEE
T ss_pred CCcceEEEEecCCCceEEE
Confidence 399999988765443
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=7.7e-18 Score=135.08 Aligned_cols=203 Identities=11% Similarity=0.095 Sum_probs=142.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecC-CCeEEEEEecc-cCCeEEEEECCCCCE--EEEEc-------------C
Q psy4393 27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGH-KLGISDVAWSSDSRL--LVSGS-------------D 89 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~ 89 (247)
...+..++|+|+|++|++++.+ .|.+|++. +++........ ......++|+|+|++ ++++. .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 3467899999999999988887 99999986 66654333211 123455889999994 44553 6
Q ss_pred CCeEEEEECC-CceEEEEEe----cCCccEEEEEEcCCCCEEEEee-CCCCEEEEECC-CCeEE--Eeec--CCCCCeEE
Q psy4393 90 DKTLKIWELS-SGKCLKTLK----GHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVR-TGKCL--KTLP--AHSDPVSA 158 (247)
Q Consensus 90 d~~i~v~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~-~~~~~--~~~~--~~~~~i~~ 158 (247)
++.+.+|++. +++....+. .+...+.++.|+|+|++++++. .++.|++||+. +++.. ..+. .+...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 8899999997 455443333 2445688999999999887765 36789999998 66542 2333 23456889
Q ss_pred EEECCCCCEEEEecC-CCeEEEEeCC--Cceeee---eec--cCC----CC------CeEEEE-ECCCCCEEEEEEcC-C
Q psy4393 159 VHFNRDGSLIVSSSY-DGLCRIWDTA--SGQCLK---TLI--DDD----NP------PVSFVK-FSPNGKYILAATLD-N 218 (247)
Q Consensus 159 ~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~~---~~~--~~~----~~------~v~~~~-~s~~~~~l~~~~~d-g 218 (247)
++|+|+|++++++.. ++.+.+|+.. +++... .+. ... .. .+..++ |+|||++|+++..+ +
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence 999999998887764 6899998764 454321 111 111 11 367899 99999999877643 3
Q ss_pred -----eEEEEECC-Ccce
Q psy4393 219 -----TLKLWDSK-VVTP 230 (247)
Q Consensus 219 -----~i~vwd~~-~~~~ 230 (247)
.|.+|+.+ +++.
T Consensus 278 ~~~~~~i~v~~~~~~g~~ 295 (365)
T 1jof_A 278 FELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp TTSCCEEEEEEECTTSCE
T ss_pred CCCCCeEEEEEECCCCCE
Confidence 89999986 4443
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=3e-19 Score=155.14 Aligned_cols=195 Identities=15% Similarity=0.218 Sum_probs=143.4
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccC---CeEEEEECCCCCEEEEEcC---------CCeEEEEECC
Q psy4393 32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSRLLVSGSD---------DKTLKIWELS 99 (247)
Q Consensus 32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~v~d~~ 99 (247)
+++|+|+|+++++ +.|+.|++||..+++....+..+.. .+.+++|+|||++|+.++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6789999976554 5699999999998887766665543 4889999999999998876 6899999999
Q ss_pred CceEE--EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCCCe-----------------EEE
Q psy4393 100 SGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPV-----------------SAV 159 (247)
Q Consensus 100 ~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i-----------------~~~ 159 (247)
+++.+ ..+ ...+..+.|+|+|+.|+++. ++.|++||+.+++...... .+...+ .++
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 88762 222 24477789999999999885 7899999998877543321 222212 479
Q ss_pred EECCCCCEEEEecCCC----------------------------------eEEEEeCCCceee--eee-----ccCCCCC
Q psy4393 160 HFNRDGSLIVSSSYDG----------------------------------LCRIWDTASGQCL--KTL-----IDDDNPP 198 (247)
Q Consensus 160 ~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~~~--~~~-----~~~~~~~ 198 (247)
+|+|||+.|++++.|. .+.+||+.+++.. ..+ ...+...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 9999999999887542 7889999887642 111 1134456
Q ss_pred eEEEEECCCCCEEEEEEcC----CeEEEEE----CCCcceE
Q psy4393 199 VSFVKFSPNGKYILAATLD----NTLKLWD----SKVVTPA 231 (247)
Q Consensus 199 v~~~~~s~~~~~l~~~~~d----g~i~vwd----~~~~~~~ 231 (247)
+..++|+||++++++.... ..|.+|| ..+++..
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 7889999998877764432 2588899 6665443
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=1.2e-18 Score=148.06 Aligned_cols=193 Identities=9% Similarity=0.114 Sum_probs=138.5
Q ss_pred ecCC-CCeEEEEECCCCCEEEEEeC---CCeEEEEecCC---CeEEEEEecccCCeEEEEECCCCCE-EEEEcCCCeEEE
Q psy4393 24 AGHT-KAVSSVKFSPNGEWLASSSA---DKLIKIWGAYD---GKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKI 95 (247)
Q Consensus 24 ~~h~-~~v~~~~~s~~~~~l~~~~~---dg~v~iw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v 95 (247)
..|. ..+.+++|+|| +.+++++. +...++|.... +... .+.. .......+|+|+++. +++.+.++.+.+
T Consensus 60 t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l 136 (582)
T 3o4h_A 60 NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVAL 136 (582)
T ss_dssp CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEE
T ss_pred ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceE
Confidence 3455 58999999999 77777664 45556655432 2222 3322 223446688888753 333334444559
Q ss_pred EECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393 96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 171 (247)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 171 (247)
||+.+++.......+. ..+.|+|+|+.+++++.+ +.|++||+.+++.. .+..+.+.+..++|+|||+.|+++
T Consensus 137 ~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~ 212 (582)
T 3o4h_A 137 YALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGL 212 (582)
T ss_dssp EEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEE
T ss_pred EEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEc
Confidence 9998887654443332 678899999999988776 67999999887754 566777888999999999999988
Q ss_pred cCCC--eEEEEeCCCceeeeeeccCCCCCeEEEE--------ECCCCCEEEEEEcCCeEEEEEC
Q psy4393 172 SYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVK--------FSPNGKYILAATLDNTLKLWDS 225 (247)
Q Consensus 172 ~~dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~vwd~ 225 (247)
..++ .|.+||+.+++.. ....+...+..++ |+|||.++++++.||++++|+.
T Consensus 213 ~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 213 ETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8888 8999999988765 3333333344445 9999988889999999999998
No 162
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=1.8e-16 Score=122.60 Aligned_cols=200 Identities=16% Similarity=0.289 Sum_probs=148.2
Q ss_pred CCCCeEEEEE-CCCCCEEEEEeC-CCeEEEEecCCCeEEEEEec-ccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393 26 HTKAVSSVKF-SPNGEWLASSSA-DKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK 102 (247)
Q Consensus 26 h~~~v~~~~~-s~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 102 (247)
|...+..+++ .++++++++... ++.|.+|+ .+++....+.. +...+..++++|+|+.+++...++.|.+||.. ++
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence 4457889999 577776666543 78999999 46666555543 33468899999999988888888999999964 55
Q ss_pred EEEEEe--cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC--CCCeEEEEECCCCCEEEEecCCC-eE
Q psy4393 103 CLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDG-LC 177 (247)
Q Consensus 103 ~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg-~i 177 (247)
....+. .+...+..++++++++++++...++.|++||.. ++.+..+..+ ......++++++|.++++...++ .|
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i 231 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNL 231 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence 555553 233457889999999988887888999999974 4555555433 25678999999999888887776 99
Q ss_pred EEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393 178 RIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 178 ~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
.+||.. ++.+..+.... ......++++|+|+++++ +.|++|++|+.....|
T Consensus 232 ~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 232 TIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred EEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 999964 44444443322 233678999999986666 6799999999876554
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=156.40 Aligned_cols=197 Identities=14% Similarity=0.188 Sum_probs=139.5
Q ss_pred CeEEEEECCCCCEEEEEeC---------CCeEEEEecCCCeEE--EEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 29 AVSSVKFSPNGEWLASSSA---------DKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~~~---------dg~v~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
.+.+++|||||++|+.++. ++.|++||..+++.. ..+ ...+..++|+|||+.|+.+. ++.|++|+
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 3889999999999988765 689999999887651 112 24578899999999998885 78999999
Q ss_pred CCCceEEEEE-ecCCccE-----------------EEEEEcCCCCEEEEeeCCC--------------------------
Q psy4393 98 LSSGKCLKTL-KGHSNYV-----------------FCCNFNPQSNLIVSGSFDE-------------------------- 133 (247)
Q Consensus 98 ~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~~~~~d~-------------------------- 133 (247)
+.+++..... .++...+ ..+.|+|+|+.|++++.|.
T Consensus 137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 9887654322 1222212 3789999999999987552
Q ss_pred --------CEEEEECCCCeEE---E-----eecCCCCCeEEEEECCCCCEEEEecCC----CeEEEEe----CCCceeee
Q psy4393 134 --------SVRIWDVRTGKCL---K-----TLPAHSDPVSAVHFNRDGSLIVSSSYD----GLCRIWD----TASGQCLK 189 (247)
Q Consensus 134 --------~i~v~d~~~~~~~---~-----~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d----~~~~~~~~ 189 (247)
.|++||+.+++.. . .+..+...+..++|+||++++++.... ..|.+|| +.+++...
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 6889999887642 1 123567778999999998877664322 2588899 77776543
Q ss_pred eec---cCCCCCeE-----EEEECCCCCEEEE--EEcCC--eEEEEECCCcc
Q psy4393 190 TLI---DDDNPPVS-----FVKFSPNGKYILA--ATLDN--TLKLWDSKVVT 229 (247)
Q Consensus 190 ~~~---~~~~~~v~-----~~~~s~~~~~l~~--~~~dg--~i~vwd~~~~~ 229 (247)
... ..+...+. .+.|+|||+.|+. ...+| .|.+||.....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 331 22333333 6789999997665 33455 67777876654
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=1.7e-17 Score=133.14 Aligned_cols=199 Identities=14% Similarity=0.142 Sum_probs=138.4
Q ss_pred eEEEEECCCCCE--EEEEe-------------CCCeEEEEecC-CCeEEEEEe----cccCCeEEEEECCCCCEEEEEc-
Q psy4393 30 VSSVKFSPNGEW--LASSS-------------ADKLIKIWGAY-DGKFEKTIS----GHKLGISDVAWSSDSRLLVSGS- 88 (247)
Q Consensus 30 v~~~~~s~~~~~--l~~~~-------------~dg~v~iw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~- 88 (247)
+..++|+|+|++ +++++ .+|.+.+|++. +++....+. .+...+..++|+|+|++++++.
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence 456789999994 44553 68999999986 455544333 2345689999999999887765
Q ss_pred CCCeEEEEECC-CceEE--EEEe--cCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECC--CCeEE---Ee---ecCC--
Q psy4393 89 DDKTLKIWELS-SGKCL--KTLK--GHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVR--TGKCL---KT---LPAH-- 152 (247)
Q Consensus 89 ~d~~i~v~d~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~--~~~~~---~~---~~~~-- 152 (247)
.++.|.+|++. +++.. ..+. .+......+.|+|+++++++++. ++.+.+|++. +++.. .. +...
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence 46799999998 66543 2333 12455788999999999887765 6789999765 45432 11 2211
Q ss_pred --CC------CeEEEE-ECCCCCEEEEecCCC------eEEEEeCC-Cceeeee--eccCCCCCeEEEEECC---CCCEE
Q psy4393 153 --SD------PVSAVH-FNRDGSLIVSSSYDG------LCRIWDTA-SGQCLKT--LIDDDNPPVSFVKFSP---NGKYI 211 (247)
Q Consensus 153 --~~------~i~~~~-~~~~~~~l~~~~~dg------~i~v~d~~-~~~~~~~--~~~~~~~~v~~~~~s~---~~~~l 211 (247)
.. .+..++ |+|||++|+++..+. .|.+|++. +++.... ...........++|+| ||++|
T Consensus 245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l 324 (365)
T 1jof_A 245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM 324 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEE
Confidence 11 478899 999999888765432 89999986 5554321 1211222334578999 89999
Q ss_pred EEEEcC-CeEEEEECCCc
Q psy4393 212 LAATLD-NTLKLWDSKVV 228 (247)
Q Consensus 212 ~~~~~d-g~i~vwd~~~~ 228 (247)
++++.+ +.|.+|+.+..
T Consensus 325 ~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 325 AITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECSSSCEEEEEEEETT
T ss_pred EEEEcCCCeEEEEEEchh
Confidence 999875 89999988765
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=4.4e-18 Score=148.38 Aligned_cols=198 Identities=12% Similarity=0.158 Sum_probs=145.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCC-----eEEEEECCCCCEEEEEcCC---------CeE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----ISDVAWSSDSRLLVSGSDD---------KTL 93 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~i 93 (247)
....++.|+|||++++++ |+.|++|+..+++....+.++... ..++.|+|||+.|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345688999999988886 899999999998887777766532 2448899999999988775 567
Q ss_pred EEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCCCe----------------
Q psy4393 94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPV---------------- 156 (247)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i---------------- 156 (247)
.+||+.+++.. .+..+...+....|+|+|+.||.+. ++.|++||+.+++...... .+...+
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 79999998754 4556667789999999999999884 6899999998876543211 222222
Q ss_pred -EEEEECCCCCEEEEecCCC------------------------------------eEEEEeCCC---ce--eeeeecc-
Q psy4393 157 -SAVHFNRDGSLIVSSSYDG------------------------------------LCRIWDTAS---GQ--CLKTLID- 193 (247)
Q Consensus 157 -~~~~~~~~~~~l~~~~~dg------------------------------------~i~v~d~~~---~~--~~~~~~~- 193 (247)
..+.|+|||+.|+.+..|. .+.+||+.+ ++ ....+..
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 3488999999988764221 578899888 62 1222221
Q ss_pred ----CCCCCeEEEEECCCCCEEEEEEc----CCeEEEEECCCcc
Q psy4393 194 ----DDNPPVSFVKFSPNGKYILAATL----DNTLKLWDSKVVT 229 (247)
Q Consensus 194 ----~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~ 229 (247)
.+..-+..++|+|||+.++.... +..|.+||..+++
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 13445788999999997776543 2379999988765
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=2.6e-15 Score=116.12 Aligned_cols=205 Identities=15% Similarity=0.229 Sum_probs=150.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec------ccCCeEEEEE-CCCCCEEEEEcC-CCeEEEEE
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG------HKLGISDVAW-SSDSRLLVSGSD-DKTLKIWE 97 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~------~~~~v~~~~~-~~~~~~l~~~~~-d~~i~v~d 97 (247)
|-..+.+++++++|+++++...++.|.+|+.. ++....+.. +...+..+++ .++++.+++... ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 44678999999999988887888999999976 555555432 2346788999 577776666543 78999999
Q ss_pred CCCceEEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec--CCCCCeEEEEECCCCCEEEEecCC
Q psy4393 98 LSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSYD 174 (247)
Q Consensus 98 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d 174 (247)
.+++.+..+.. +......+.++++++++++...++.|.+||.. ++.+..+. .+...+..++++++++++++...+
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 55666655543 33467889999999988887788899999964 45555543 334568899999999988887889
Q ss_pred CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcCC-eEEEEECCCcceEEEEc
Q psy4393 175 GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDN-TLKLWDSKVVTPAIICS 235 (247)
Q Consensus 175 g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~ 235 (247)
+.|.+||... +.+..+.... ......++++++|+++++...++ .|.+||.+. +.+..+.
T Consensus 185 ~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~ 245 (286)
T 1q7f_A 185 HCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISALE 245 (286)
T ss_dssp TEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEE
T ss_pred CEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEEEc
Confidence 9999999754 4444443221 24568899999999888887776 999999653 3333443
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=3.1e-16 Score=125.63 Aligned_cols=206 Identities=13% Similarity=0.106 Sum_probs=136.2
Q ss_pred EEEECCCCCEEEEEeC----------CCeEEEEecCCCeEEEEEecc------cCCeEEEEECCCCCEEEEEcC--CCeE
Q psy4393 32 SVKFSPNGEWLASSSA----------DKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSDSRLLVSGSD--DKTL 93 (247)
Q Consensus 32 ~~~~s~~~~~l~~~~~----------dg~v~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~~i 93 (247)
.++|+|||+++++++. ++.|.+||..+.+....+... ......++++|+|++++++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 8999999999988763 567999999888877776532 234567899999999988864 5789
Q ss_pred EEEECCCceEEEE-EecCCccEEEEEEcCCC-CEEEEeeCCCC-------------------------------------
Q psy4393 94 KIWELSSGKCLKT-LKGHSNYVFCCNFNPQS-NLIVSGSFDES------------------------------------- 134 (247)
Q Consensus 94 ~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~------------------------------------- 134 (247)
.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.
T Consensus 134 ~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK 211 (361)
T ss_dssp EEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred EEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence 9999999887766 43211 1112223322 23333333333
Q ss_pred -----------EEEEECCCCeE--EEeecCC----------CCCeEEEEECCCCCEEEEecC-----------CCeEEEE
Q psy4393 135 -----------VRIWDVRTGKC--LKTLPAH----------SDPVSAVHFNRDGSLIVSSSY-----------DGLCRIW 180 (247)
Q Consensus 135 -----------i~v~d~~~~~~--~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~-----------dg~i~v~ 180 (247)
+.++|+..... +..+... ......++++|++..++++.. .+.|.+|
T Consensus 212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi 291 (361)
T 2oiz_A 212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM 291 (361)
T ss_dssp SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence 44444432210 1111000 001112678999887776543 3489999
Q ss_pred eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc--ceEEEE-ccCCcccce
Q psy4393 181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV--TPAIIC-STPLNLNYF 243 (247)
Q Consensus 181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~-~~~~~~~~~ 243 (247)
|+.+++.+..+..+. ...++|+|||++|+++.. +.|.+||..+. +.+..+ .....|+.|
T Consensus 292 D~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 292 DTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp ETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred ECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence 999999888775544 678999999999998886 99999999998 776664 344445554
No 168
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.78 E-value=5.9e-16 Score=120.44 Aligned_cols=208 Identities=13% Similarity=0.060 Sum_probs=149.0
Q ss_pred EecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393 23 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 23 ~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 101 (247)
+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+..++++|+|+++++...++.|.+||..++
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 445666788999999998 6777888899999998776 4556556677899999999998888777889999999777
Q ss_pred eEEEEEecC----CccEEEEEEcCCCCEEEE----ee-------------CCCCEEEEECCCCeEEEeecCCCCCeEEEE
Q psy4393 102 KCLKTLKGH----SNYVFCCNFNPQSNLIVS----GS-------------FDESVRIWDVRTGKCLKTLPAHSDPVSAVH 160 (247)
Q Consensus 102 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 160 (247)
+........ ...+..+.++|+|+++++ |. ..+.|..++.. ++ +..+..+......++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~ 178 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLA 178 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEE
Confidence 654332211 123456889999998887 33 13456666655 43 333444556678999
Q ss_pred ECCCCCEEEEecCCCeEEEEeCC-Ccee---eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393 161 FNRDGSLIVSSSYDGLCRIWDTA-SGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 161 ~~~~~~~l~~~~~dg~i~v~d~~-~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 236 (247)
|+|+++.+++.+.++.|.+||+. +++. ...+ .........++++++|++.++. ++.|.+||.+ ++.+..+..
T Consensus 179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC
T ss_pred ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC
Confidence 99999988777778999999986 4443 2233 2223334578999999866665 8899999987 555555554
Q ss_pred CC
Q psy4393 237 PL 238 (247)
Q Consensus 237 ~~ 238 (247)
+.
T Consensus 255 ~~ 256 (296)
T 3e5z_A 255 PQ 256 (296)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=6.8e-16 Score=122.04 Aligned_cols=207 Identities=12% Similarity=0.093 Sum_probs=152.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCC------------------------CeEEEEecCCCeEEEEEe-cccCCeEEEEECCCC
Q psy4393 27 TKAVSSVKFSPNGEWLASSSAD------------------------KLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDS 81 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 81 (247)
-+.+.+++++|+|+++++...+ +.|.+||..+++...... .+......++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999988887666 479999998887765554 233468899999999
Q ss_pred CEEEEEcCCCeEEEEECCCce-EEEEEe---------cCCccEEEEEEcC-CCCEEEEee-CCCCEEEEECCCCeEEEee
Q psy4393 82 RLLVSGSDDKTLKIWELSSGK-CLKTLK---------GHSNYVFCCNFNP-QSNLIVSGS-FDESVRIWDVRTGKCLKTL 149 (247)
Q Consensus 82 ~~l~~~~~d~~i~v~d~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~v~d~~~~~~~~~~ 149 (247)
+++++...++.|++||..... .+..+. .+......++++| ++.++++.+ .++.|++|| ..++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986442 344442 2233578899999 788888886 689999999 456666655
Q ss_pred cCC----------CCCeEEEEECCC-CCEEEEecCCCeEEEEeCCCceeeeeecc-CCCCCeEEEEECC------CCCEE
Q psy4393 150 PAH----------SDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSP------NGKYI 211 (247)
Q Consensus 150 ~~~----------~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~s~------~~~~l 211 (247)
... -.....++++|+ +.++++...++.|.+||..+++.+..+.. .....+..++|+| +|+..
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~ 261 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY 261 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence 321 123788999998 77777778889999999988887766643 2334577889999 33322
Q ss_pred EEEEcCCeEEEEECCCcceEEEE
Q psy4393 212 LAATLDNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 212 ~~~~~dg~i~vwd~~~~~~~~~~ 234 (247)
++...+++|++||..+++.+..+
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEE
Confidence 22333458999998887776665
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=4.5e-16 Score=123.06 Aligned_cols=200 Identities=13% Similarity=0.116 Sum_probs=149.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-EEEEEe---------cccCCeEEEEECC-CCCEEEEEc-CCCeE
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTIS---------GHKLGISDVAWSS-DSRLLVSGS-DDKTL 93 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~~~~-~d~~i 93 (247)
+......++++|+|+++++...++.|++|+..... ....+. .+......++++| ++..+++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 44578899999999988888888999999975432 334442 2233578999999 788888876 68999
Q ss_pred EEEECCCceEEEEEecC----------CccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeec--CCCCCeEEEE
Q psy4393 94 KIWELSSGKCLKTLKGH----------SNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLP--AHSDPVSAVH 160 (247)
Q Consensus 94 ~v~d~~~~~~~~~~~~~----------~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~ 160 (247)
++|+ .++..+..+... ......++++|+ +.++++...++.|++||..+++.+..+. .+...+..++
T Consensus 169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 9999 456666555321 123678999998 7777777888999999999888877764 3455788899
Q ss_pred ECCCCCEEEE-------ecCCCeEEEEeCCCceeeeeec--cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393 161 FNRDGSLIVS-------SSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV 227 (247)
Q Consensus 161 ~~~~~~~l~~-------~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 227 (247)
++| +..+.+ ...+..+.+||..+++.+..+. .........++++|+|.++++...+++|++|+...
T Consensus 248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 999 433333 3344589999999998777653 22334568899999997777788899999999754
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=2.8e-17 Score=143.37 Aligned_cols=199 Identities=11% Similarity=0.102 Sum_probs=137.0
Q ss_pred EEEEECCCCCEEEEEeCC---------CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393 31 SSVKFSPNGEWLASSSAD---------KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 31 ~~~~~s~~~~~l~~~~~d---------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 101 (247)
..+.|||||++|+.++.+ +.+.+||..+++.. .+..+...+...+|+|||+.|+.+. ++.|++|+..++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence 347899999999887765 56779999887654 3555667799999999999998884 689999999887
Q ss_pred eEEEEEe-cCCccE-----------------EEEEEcCCCCEEEEeeCCC------------------------------
Q psy4393 102 KCLKTLK-GHSNYV-----------------FCCNFNPQSNLIVSGSFDE------------------------------ 133 (247)
Q Consensus 102 ~~~~~~~-~~~~~v-----------------~~~~~~~~~~~l~~~~~d~------------------------------ 133 (247)
+..+... ++...+ ..+.|+|||+.|+..+.|.
T Consensus 143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 6543211 222212 2478999999998875321
Q ss_pred ------CEEEEECCC---Ce--EEEeecC------CCCCeEEEEECCCCCEEEEecC----CCeEEEEeCCCce----ee
Q psy4393 134 ------SVRIWDVRT---GK--CLKTLPA------HSDPVSAVHFNRDGSLIVSSSY----DGLCRIWDTASGQ----CL 188 (247)
Q Consensus 134 ------~i~v~d~~~---~~--~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~----~~ 188 (247)
.|++||+.+ ++ ....+.. +...+..++|+|||+.++.... +..|.+||+.+++ +.
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 478899988 62 2223332 6667899999999996665432 3379999998876 22
Q ss_pred e--ee-ccCCCCC-----eEEEEECCCCCEEE-EEEc-CC--eEEEEECCCcceE
Q psy4393 189 K--TL-IDDDNPP-----VSFVKFSPNGKYIL-AATL-DN--TLKLWDSKVVTPA 231 (247)
Q Consensus 189 ~--~~-~~~~~~~-----v~~~~~s~~~~~l~-~~~~-dg--~i~vwd~~~~~~~ 231 (247)
. .+ ...+... .....|+|||+.|+ ..+. +| .|.+||...+.+.
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 1 11 1112211 22578999999887 6653 34 7888898766544
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=1.8e-17 Score=133.59 Aligned_cols=202 Identities=8% Similarity=0.010 Sum_probs=137.2
Q ss_pred eEEEEECCCCCEEEEEeCC---CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393 30 VSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT 106 (247)
Q Consensus 30 v~~~~~s~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 106 (247)
+..++|+|||++|+..... ..+.+|+..+++..............+.|+|||+.|+.++.++.+++||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 6788999999998766433 3688888877765433332222222378999999999999999999999988776554
Q ss_pred EecCCccEEE-------------------EEEcCCCCEEEEe-----eCCCCEEEEECCCCeEEEeecCCCCCeEEEEEC
Q psy4393 107 LKGHSNYVFC-------------------CNFNPQSNLIVSG-----SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 162 (247)
Q Consensus 107 ~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 162 (247)
...+...... +.|+|+++.++.. ..+..|++||+.+++..... .+...+..+.|+
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s 196 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR 196 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence 4433332222 2456777666544 34567999999887754433 345678899999
Q ss_pred C-CCCEEEEecCC------CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393 163 R-DGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT 229 (247)
Q Consensus 163 ~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~ 229 (247)
| ++..|+..+.+ ..|.+||+..++.. .+.... ...+..++|+|||++|+.++.+ +.|.+||..+++
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 9 78866665433 46888898765432 222221 2246778999999988877654 459999998776
Q ss_pred eEEE
Q psy4393 230 PAII 233 (247)
Q Consensus 230 ~~~~ 233 (247)
...+
T Consensus 276 ~~~l 279 (396)
T 3c5m_A 276 NEEV 279 (396)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 5443
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=1.3e-14 Score=114.48 Aligned_cols=214 Identities=8% Similarity=0.054 Sum_probs=150.4
Q ss_pred EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC----CeEEEEE
Q psy4393 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD----KTLKIWE 97 (247)
Q Consensus 22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d 97 (247)
.+..+...+.+++|+++|++++++..++.|.+|+..+++.......+...+.+++++|+|+++++...+ +.|.+||
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence 455677778999999999987788888999999988777655444456679999999999988877666 6899999
Q ss_pred CCCceEEEEEe--cCCccEEEEEEcCCCCEEEEeeC------CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEE
Q psy4393 98 LSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSF------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 169 (247)
Q Consensus 98 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 169 (247)
..++.....+. .....+..+.++|+++++++... .+.|..+|..+++... +.........++|+|+++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLW 197 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEE
Confidence 88776543332 23346888999999988877653 2456667765544322 222223568899999998654
Q ss_pred -EecCCCeEEEEeCCC-ceeeee----ec--cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 170 -SSSYDGLCRIWDTAS-GQCLKT----LI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 170 -~~~~dg~i~v~d~~~-~~~~~~----~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
+...++.|.+||..+ ++.... .. .........++++++|++.++...++.|.+||.+ .+.+..+..+
T Consensus 198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~ 272 (333)
T 2dg1_A 198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIP 272 (333)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECT
T ss_pred EEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcC
Confidence 445678999999863 322211 11 1111346779999999988888788999999984 4444455443
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=8.1e-17 Score=138.59 Aligned_cols=194 Identities=16% Similarity=0.179 Sum_probs=137.6
Q ss_pred EEEEC--CCCCE-EEEEeC-CCeEEEEecC--C-CeEEEEEec-----ccCCeEEEEECCCCCEEEEEcCC---------
Q psy4393 32 SVKFS--PNGEW-LASSSA-DKLIKIWGAY--D-GKFEKTISG-----HKLGISDVAWSSDSRLLVSGSDD--------- 90 (247)
Q Consensus 32 ~~~~s--~~~~~-l~~~~~-dg~v~iw~~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------- 90 (247)
...|+ |||+. |+.++. +..|.+++.. . +. ...+.. +...+..++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 55565 99998 776543 5567777664 2 33 344444 45568899999999999988776
Q ss_pred -CeEEEEECCC------ceEEEEEe-cCCccEEEEEEcCCCCEEEEeeCCC--------CEEEEECC-CC---eEEEeec
Q psy4393 91 -KTLKIWELSS------GKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDE--------SVRIWDVR-TG---KCLKTLP 150 (247)
Q Consensus 91 -~~i~v~d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~--------~i~v~d~~-~~---~~~~~~~ 150 (247)
..|++||+.+ ++. ..+. .+...+..+.|+|+|+.|+..+.++ .|++||+. ++ +......
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5899999987 554 3444 4556677789999999999877553 69999998 56 3333333
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCC--eEEEEeCCCceeeeeeccCCCC--------CeEEEEECCCCCEEEEEEcCCeE
Q psy4393 151 AHSDPVSAVHFNRDGSLIVSSSYDG--LCRIWDTASGQCLKTLIDDDNP--------PVSFVKFSPNGKYILAATLDNTL 220 (247)
Q Consensus 151 ~~~~~i~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~dg~i 220 (247)
.+...+..+.|+|||++++++..++ .|.+||+.+++... +...+.. .+..++|+|+++++++++. +.+
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA 316 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc
Confidence 4467889999999999888888788 67777776665433 2222111 1456889999999999988 999
Q ss_pred EEE--ECCCcc
Q psy4393 221 KLW--DSKVVT 229 (247)
Q Consensus 221 ~vw--d~~~~~ 229 (247)
+|| |...+.
T Consensus 317 ~l~~~d~~~~~ 327 (662)
T 3azo_A 317 VLGILDPESGE 327 (662)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCc
Confidence 999 544443
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=7.1e-16 Score=122.37 Aligned_cols=191 Identities=18% Similarity=0.173 Sum_probs=129.9
Q ss_pred CCeEEEEECCCCCEEEEEeCC---C--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC-------------
Q psy4393 28 KAVSSVKFSPNGEWLASSSAD---K--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD------------- 89 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~d---g--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------- 89 (247)
..+..++|+|||++|+.++.+ + .|.+|+..+++....... .. +..+.|+|||+.|+.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357789999999998876643 3 377778777765544443 33 899999999998887763
Q ss_pred --------------CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCC-------CEEEEECCCCeEEEe
Q psy4393 90 --------------DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-------SVRIWDVRTGKCLKT 148 (247)
Q Consensus 90 --------------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~v~d~~~~~~~~~ 148 (247)
...|.+||+.+++....+.. . .+..+.|+|++ +++++..++ ...+|.+.+++. ..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence 25789999988876344544 3 67788999999 777765442 334444435543 33
Q ss_pred ecCCCCCeEEEEECCCCCEEEEecCC--------CeEEEEeCCCceeeeeeccCCCCCeEE-EEECCCCCEEEEEEcCCe
Q psy4393 149 LPAHSDPVSAVHFNRDGSLIVSSSYD--------GLCRIWDTASGQCLKTLIDDDNPPVSF-VKFSPNGKYILAATLDNT 219 (247)
Q Consensus 149 ~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~ 219 (247)
+..+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++. ..+...+...+.. +.|+ |+ ++++++.++.
T Consensus 213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~ 284 (347)
T 2gop_A 213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS 284 (347)
T ss_dssp EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence 3333 445444 8999988776643 4688888 4443 3333344456775 8999 88 8888999999
Q ss_pred EEEEECCCcceEEE
Q psy4393 220 LKLWDSKVVTPAII 233 (247)
Q Consensus 220 i~vwd~~~~~~~~~ 233 (247)
++|| ...++...+
T Consensus 285 ~~l~-~~~g~~~~~ 297 (347)
T 2gop_A 285 VNLY-IWDGEIKPI 297 (347)
T ss_dssp EEEE-EESSSEEEE
T ss_pred EEEE-EcCCceEEE
Confidence 9999 775444333
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=1.2e-15 Score=132.58 Aligned_cols=208 Identities=15% Similarity=0.135 Sum_probs=143.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCC-----eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCe--------
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKT-------- 92 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~dg-----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------- 92 (247)
|...+.+++|||||++||.+..++ .|++||+.+++....... ...+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999998765433 899999998877654322 223667899999999998877655
Q ss_pred --------EEEEECCCceE--EEEEec--CCccEEEEEEcCCCCEEEEeeC-----CCCEEEEECCC------Ce-EEEe
Q psy4393 93 --------LKIWELSSGKC--LKTLKG--HSNYVFCCNFNPQSNLIVSGSF-----DESVRIWDVRT------GK-CLKT 148 (247)
Q Consensus 93 --------i~v~d~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~------~~-~~~~ 148 (247)
|++|++.+++. ...+.. +...+..+.|+|+|+.++..+. +..|++||+.+ +. ....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 99999987652 222222 3445778899999999887764 56799999976 43 3455
Q ss_pred ecCCCCCeEEEEECCCCCEEEEecCC----CeEEEEeCCCcee--eeeeccCCC-CCeEEEEECCCCCEEEEEEcCC--e
Q psy4393 149 LPAHSDPVSAVHFNRDGSLIVSSSYD----GLCRIWDTASGQC--LKTLIDDDN-PPVSFVKFSPNGKYILAATLDN--T 219 (247)
Q Consensus 149 ~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~--~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg--~ 219 (247)
+..+...+.. .|+|+|..|+..+.. +.|.+||+.+++. ...+..+.. ..+..++|++++.++++...|+ .
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 5555555554 478888877665543 3699999987641 233433332 3577788988888888888888 4
Q ss_pred EEEEECCCcceEEEEc
Q psy4393 220 LKLWDSKVVTPAIICS 235 (247)
Q Consensus 220 i~vwd~~~~~~~~~~~ 235 (247)
|.+||..+++.+..+.
T Consensus 361 l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 361 LQLHDLATGALLKIFP 376 (710)
T ss_dssp EEEEETTTCCEEEEEC
T ss_pred EEEEECCCCCEEEecC
Confidence 6667765555433333
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=5.1e-17 Score=139.85 Aligned_cols=208 Identities=13% Similarity=0.098 Sum_probs=147.5
Q ss_pred EEecCCCCeEEEEECCCCCEEEEE--eCCCeEEEEecCCCeEEEEEecccCCeE---------EEEEC--CCCCE-EEEE
Q psy4393 22 TLAGHTKAVSSVKFSPNGEWLASS--SADKLIKIWGAYDGKFEKTISGHKLGIS---------DVAWS--SDSRL-LVSG 87 (247)
Q Consensus 22 ~~~~h~~~v~~~~~s~~~~~l~~~--~~dg~v~iw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~ 87 (247)
.+.+|...+..++|++++-.++.. +.++...+|....+.....+..+...+. ...|+ |||+. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 345789999999999876666665 5578899998644444555555555555 55565 99998 7665
Q ss_pred cC-CCeEEEEECC--C-ceEEEEEec-----CCccEEEEEEcCCCCEEEEeeCC----------CCEEEEECCC------
Q psy4393 88 SD-DKTLKIWELS--S-GKCLKTLKG-----HSNYVFCCNFNPQSNLIVSGSFD----------ESVRIWDVRT------ 142 (247)
Q Consensus 88 ~~-d~~i~v~d~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~v~d~~~------ 142 (247)
+. +..|.++++. . +. ...+.. +...+..++|+|+|+.|++++.+ ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 54 5677777765 2 33 344544 45678889999999999988876 5799999987
Q ss_pred CeEEEeec-CCCCCeEEEEECCCCCEEEEecCC--------CeEEEEeCC-Cce--eeeeeccCCCCCeEEEEECCCCCE
Q psy4393 143 GKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYD--------GLCRIWDTA-SGQ--CLKTLIDDDNPPVSFVKFSPNGKY 210 (247)
Q Consensus 143 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~-~~~--~~~~~~~~~~~~v~~~~~s~~~~~ 210 (247)
++. ..+. .+...+..++|+|||++|+.++.+ ..|.+||+. +++ ....+...+...+..+.|+|||++
T Consensus 177 ~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 177 SAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred Cce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 443 4444 445667778999999999877654 379999998 561 233333333456888999999997
Q ss_pred EEEEEcCC--eEEEEECCCcceE
Q psy4393 211 ILAATLDN--TLKLWDSKVVTPA 231 (247)
Q Consensus 211 l~~~~~dg--~i~vwd~~~~~~~ 231 (247)
++++..++ .|.+||..+++..
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCEE
T ss_pred EEEECCCCCeEEEEEECCCCcee
Confidence 77777788 6777776555543
No 178
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=1.2e-15 Score=122.91 Aligned_cols=209 Identities=12% Similarity=0.029 Sum_probs=139.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEE--ECCCCCEEEEE----------------
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA--WSSDSRLLVSG---------------- 87 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~---------------- 87 (247)
|...+..+.|+|||+.|+.+..++.+++||..+++.......+...+.... ++|+++.++..
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchh
Confidence 334444678999999999999889999999998877666555444443333 48999988742
Q ss_pred ------cCCCeEEEEECCCceEEEEEecCCccEEEEEEcC-CCCEEEEeeCC------CCEEEEECCCCeEEEeecCCC-
Q psy4393 88 ------SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD------ESVRIWDVRTGKCLKTLPAHS- 153 (247)
Q Consensus 88 ------~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~- 153 (247)
..+..|.+||+.+++.. .+..+...+..+.|+| +++.++....+ ..|.++|+..+.. ..+..+.
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~ 236 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAE 236 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCT
T ss_pred hhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCC
Confidence 23468999999988654 3444556688899999 99988877653 3788888876543 3333333
Q ss_pred -CCeEEEEECCCCCEEEEecC-CC----eEEEEeCCCceeeeeeccCCCCC----eEEEEECCCCCEEEEE---------
Q psy4393 154 -DPVSAVHFNRDGSLIVSSSY-DG----LCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGKYILAA--------- 214 (247)
Q Consensus 154 -~~i~~~~~~~~~~~l~~~~~-dg----~i~v~d~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~--------- 214 (247)
..+....|+|||+.|+..+. ++ .|.+||+.+++............ ...+.|+|||+.|+..
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 316 (388)
T 3pe7_A 237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI 316 (388)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence 24778899999997755432 22 39999999886432211111000 0113689999988865
Q ss_pred EcCCeEEEEECCCcceEEEEcc
Q psy4393 215 TLDNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 215 ~~dg~i~vwd~~~~~~~~~~~~ 236 (247)
..+..|.+||...++...+...
T Consensus 317 ~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 317 ENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEeccCCceEEeccc
Confidence 3456999999988765444333
No 179
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.73 E-value=4.3e-15 Score=114.52 Aligned_cols=192 Identities=15% Similarity=0.091 Sum_probs=151.8
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCeEEEEEeccc-CCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCC-ccE
Q psy4393 37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS-NYV 114 (247)
Q Consensus 37 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v 114 (247)
..++.|++++.++.|.+||..+++.+..+..+. ..+.++.+.|+|+.++ +.++.|..||. +++.+..+.... ..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 346788999999999999999999999888765 4688999999999888 35778999998 788888887643 467
Q ss_pred EEEEEcCCCCEEEEeeC-CCCEEEEECCCCeEEEeecCCC------CCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee
Q psy4393 115 FCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAHS------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187 (247)
Q Consensus 115 ~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 187 (247)
..+.+.++|+.+++.+. ++.+..+|. +++.+..+.... .....+.+.++|.++++...++.|..||.. ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 78899999999999877 777888885 666665553211 133445788999999999999999999998 777
Q ss_pred eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 188 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 235 (247)
+-.+... .....+...++|+.++++..+++|..+|.++++.+-.+.
T Consensus 158 ~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 158 LNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 6665433 223456778999999998888899999999888776665
No 180
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=5.4e-15 Score=113.20 Aligned_cols=201 Identities=8% Similarity=-0.066 Sum_probs=144.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
..+.+++++++|+++++.. ++.|.+|+................+..++++++|+.+++...++.|.+|+..+.......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~ 145 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP 145 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec
Confidence 4678899999999666555 889999997655432221122346889999999998887777889999976554332222
Q ss_pred ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee
Q psy4393 108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187 (247)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 187 (247)
.........+.++++++++++...++.|.+||............+...+..++++++|.++++...++.|.+||......
T Consensus 146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 22223466789999999887777788999999887654433333335678999999998777777788999999876543
Q ss_pred eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 188 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
.. ...........++++++|+++++...+++|++|+....+.
T Consensus 226 ~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 226 TV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred ee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 22 2222224578899999999888888899999999877554
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.72 E-value=1.1e-14 Score=115.11 Aligned_cols=213 Identities=9% Similarity=-0.043 Sum_probs=152.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEeccc-----CCeEEEEECCCCCEEEEEc--CCCeEEEEECC
Q psy4393 27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAWSSDSRLLVSGS--DDKTLKIWELS 99 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~ 99 (247)
......++++++++..++...++.|.+||..+++....+.... .....+++ ++..++++. .++.|.++|..
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETT
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECC
Confidence 4567889999988544444378999999999888776665332 13456667 345555444 48899999999
Q ss_pred CceEEEEEecCCccEEEEEEcCCCCEEEEeeCC----------CCEEEEECCCCeEEEeecCC-CCCeEEEEECCCCCEE
Q psy4393 100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----------ESVRIWDVRTGKCLKTLPAH-SDPVSAVHFNRDGSLI 168 (247)
Q Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l 168 (247)
+++....+.... ....+.++|+++++++...+ +.|.++|..+++....+... ......++++|+++.|
T Consensus 161 t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~l 239 (328)
T 3dsm_A 161 TDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTL 239 (328)
T ss_dssp TTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEE
T ss_pred CCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEE
Confidence 988877776433 34567889999887776654 78999999998877666543 2357889999999988
Q ss_pred EEecCCCeEEEEeCCCceeeeee-ccCCCCCeEEEEECCCCCEE-EEE----EcCCeEEEEECCCcceEEEEccCCcccc
Q psy4393 169 VSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYI-LAA----TLDNTLKLWDSKVVTPAIICSTPLNLNY 242 (247)
Q Consensus 169 ~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l-~~~----~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 242 (247)
+++.. .+.+||..+++..... ..........++++|++..| ++. ..++.|.+||.+ ++.+..+.....|+.
T Consensus 240 yv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~ 316 (328)
T 3dsm_A 240 YWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGA 316 (328)
T ss_dssp EEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEE
T ss_pred EEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcce
Confidence 88765 8999999887753221 11113456789999954444 454 467899999998 777777777677777
Q ss_pred eee
Q psy4393 243 FYR 245 (247)
Q Consensus 243 ~~~ 245 (247)
|+.
T Consensus 317 ~~~ 319 (328)
T 3dsm_A 317 FCW 319 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=4.3e-14 Score=109.85 Aligned_cols=198 Identities=14% Similarity=0.152 Sum_probs=138.7
Q ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc----cCCeEEEEECCCCCEEEEE----c------
Q psy4393 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVSG----S------ 88 (247)
Q Consensus 23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~----~------ 88 (247)
+..+...+.+++++|+|+++++...++.|.+|+..+++........ ...+.+++++|+|+++++. .
T Consensus 64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~ 143 (296)
T 3e5z_A 64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG 143 (296)
T ss_dssp EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS
T ss_pred EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc
Confidence 3456678999999999998877766789999998777654433221 2245679999999988873 2
Q ss_pred -------CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECC-CCeE---EEeecCCCCCeE
Q psy4393 89 -------DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR-TGKC---LKTLPAHSDPVS 157 (247)
Q Consensus 89 -------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~---~~~~~~~~~~i~ 157 (247)
..+.|..++.. ++. ..+..+......++|+|+++.+++...++.|++||+. .++. ...+..+...+.
T Consensus 144 ~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~ 221 (296)
T 3e5z_A 144 YGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTD 221 (296)
T ss_dssp SCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCC
T ss_pred ccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCC
Confidence 13456666654 443 3444455567889999999988777778899999986 4443 223333444567
Q ss_pred EEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEE-CCCCCEEEEEEcCCeEEEEECCCc
Q psy4393 158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-SPNGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 158 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
.++++++|.++++. ++.|.+||.. ++.+..+..... +.+++| +|+++.|++++.+ .+.-++.++.
T Consensus 222 ~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 222 GLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp SEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred eEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 79999999976666 7889999987 555555443333 677889 6899999998875 4445555544
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=7.2e-13 Score=102.54 Aligned_cols=204 Identities=11% Similarity=0.099 Sum_probs=148.7
Q ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE-ecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
.+.+..+...+.+++++++|+..++...++.|.+|+.. +...... ......+..+++.++|..+++...++.|..||.
T Consensus 7 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 7 ELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp EEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 34555666789999999999977776667899999987 5443322 223456889999999998888777889999997
Q ss_pred CCceEEEEEe--cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe-ecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393 99 SSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDG 175 (247)
Q Consensus 99 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg 175 (247)
. ++. ..+. .....+..+.+++++.++++...++.|..||. +++.... .......+..+++++++.++++...++
T Consensus 86 ~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 162 (299)
T 2z2n_A 86 K-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNN 162 (299)
T ss_dssp T-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred C-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence 6 332 2222 23456788999999998888777889999998 5543322 233345688999999998888777788
Q ss_pred eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
.+..||. +++............+..++++++|++.++...++.|.+||. +..
T Consensus 163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 9999998 665443222223345778999999997766666889999998 444
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=9.8e-16 Score=123.45 Aligned_cols=195 Identities=9% Similarity=0.024 Sum_probs=134.1
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEE-------------------EEECCCCCEEEEE-----c
Q psy4393 33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD-------------------VAWSSDSRLLVSG-----S 88 (247)
Q Consensus 33 ~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~ 88 (247)
+.|+|||++|+.++.++.|.+|+..+++.......+...... ..|+|+++.++.. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~ 165 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN 165 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence 789999999999888889999999877665544433321222 3467777766544 3
Q ss_pred CCCeEEEEECCCceEEEEEecCCccEEEEEEcC-CCCEEEEeeCC------CCEEEEECCCCeEEEeecCC--CCCeEEE
Q psy4393 89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD------ESVRIWDVRTGKCLKTLPAH--SDPVSAV 159 (247)
Q Consensus 89 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~--~~~i~~~ 159 (247)
.+..|.+||+.+++..... .+...+..+.|+| ++..++..+.+ ..|.+||+..++.. .+..+ ...+..+
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHE 243 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEE
T ss_pred CcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccce
Confidence 5668999999887755433 4556688899999 78877765543 36888998765432 33222 2247788
Q ss_pred EECCCCCEEEEecCC-----CeEEEEeCCCceeeeeeccCCCCCeEEEEECC-CCCEEEEEE----------------cC
Q psy4393 160 HFNRDGSLIVSSSYD-----GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAAT----------------LD 217 (247)
Q Consensus 160 ~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~d 217 (247)
.|+|+|+.|+.++.+ +.|.+||+.+++........ ... +.|+| ||+++++++ .+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 999999977766543 44999999887644322111 233 88999 999888765 24
Q ss_pred CeEEEEECCCcceEEE
Q psy4393 218 NTLKLWDSKVVTPAII 233 (247)
Q Consensus 218 g~i~vwd~~~~~~~~~ 233 (247)
+.|.+||...+....+
T Consensus 320 ~~i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQKL 335 (396)
T ss_dssp CEEEEEETTTTBCCEE
T ss_pred CcEEEEecccCceEEc
Confidence 7899999887654433
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=3e-14 Score=109.04 Aligned_cols=199 Identities=11% Similarity=-0.012 Sum_probs=138.5
Q ss_pred CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
...+++++++|++++ +...++.|.+|+..+.............+..++++++++.+++.. ++.|.+||....... .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 778999999999766 446788999998754432221122234577899999999666666 889999998765432 22
Q ss_pred e-cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce
Q psy4393 108 K-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186 (247)
Q Consensus 108 ~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 186 (247)
. ........+.+++++.++++...++.|.+|+..+................++++++++++++...++.|.+||.....
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 2 222457889999999988887778899999866544332222222356789999999977777778899999988765
Q ss_pred eeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393 187 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 187 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
..... .........++++++|.++++...++.|.+||.+....
T Consensus 183 ~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 183 QVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp EEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred eEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 43322 22224568899999997667666788999999876543
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=2.4e-12 Score=99.56 Aligned_cols=197 Identities=12% Similarity=0.084 Sum_probs=143.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK 102 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 102 (247)
.+...+.+++++++|.+.++...++.|..|+.. +.. ..+. .....+..+++.+++..+++...++.|..||. +++
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence 345678999999999987776668889999875 333 2222 23446889999999998888777889999998 554
Q ss_pred EEEE-EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe-ecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393 103 CLKT-LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180 (247)
Q Consensus 103 ~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 180 (247)
.... .......+..+.+++++.++++...++.|..||. +++.... .......+..+++++++.++++...++.|.+|
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 3322 2223456788999999988887777789999998 6654332 33334567899999999987777778899999
Q ss_pred eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
|. +++............+..++++++|++.++...++.|..||.+
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 99 6654332222234567889999999866666578999999984
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=9.2e-15 Score=115.40 Aligned_cols=195 Identities=9% Similarity=0.056 Sum_probs=142.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
..|.++.|++++..++....++.++.| .+.....+..+...+.+++|++++++++++..++.|.+||..+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 456778899988877766778888888 33444556656666889999999998888888999999999887765444
Q ss_pred ecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCCeEEEeec--CCCCCeEEEEECCCCCEEEEecC------CC
Q psy4393 108 KGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSY------DG 175 (247)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~------dg 175 (247)
..+...+.++.++++++++++...+ +.|.+||..++.....+. .....+..++++|+|.++++... .+
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 3455678999999999988877666 689999988776432322 23456889999999988776653 35
Q ss_pred eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEE-EcCCeEEEEECCC
Q psy4393 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDSKV 227 (247)
Q Consensus 176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~ 227 (247)
.|..+|..+++... +.. .......++|+|+++.|+.+ +.++.|.+||.+.
T Consensus 163 ~l~~~~~~~~~~~~-~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 163 GVYYVSPDFRTVTP-IIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp EEEEECTTSCCEEE-EEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred eEEEEeCCCCEEEE-eec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 67777766554332 211 12346789999999977655 4578999999853
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.67 E-value=5.4e-15 Score=128.09 Aligned_cols=198 Identities=12% Similarity=0.095 Sum_probs=133.4
Q ss_pred cCCCCeEEEEECCCCCEEEE-----EeCCCeEEEEecCCCeEE-EEEecccCCeEEEEECCCCCEEEEEcCCCe------
Q psy4393 25 GHTKAVSSVKFSPNGEWLAS-----SSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSRLLVSGSDDKT------ 92 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~-----~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------ 92 (247)
+|...+.+++|||||++||. |+.+..|++||+.+++.. .. .........++|+|||+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 34556889999999999884 334468999999887753 11 111111267899999999998887665
Q ss_pred -------EEEEECCCce----EEEEEecCCccEEEEEEcCCCCEEEEeeCCC----CEEEEECCCCeEEEeecCCCCCeE
Q psy4393 93 -------LKIWELSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE----SVRIWDVRTGKCLKTLPAHSDPVS 157 (247)
Q Consensus 93 -------i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~~i~ 157 (247)
|++|++.++. .+.....+...+..+.|+|+|+.++..+.++ .|+++|..+++. ..+..+...+.
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~ 275 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKY 275 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCE
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceE
Confidence 9999998765 2222223445678899999999988877665 677777655543 33434444455
Q ss_pred EEEECCCCCEEEEec---CCCeEEEEeCCCcee--eeeeccCC-CCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 158 AVHFNRDGSLIVSSS---YDGLCRIWDTASGQC--LKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 158 ~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~--~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
...+ +++.+++.+. .++.|.+||+.+++. ...+.... ...+..++|+ ++.++++...|+..+||..+
T Consensus 276 ~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 276 EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 5555 5666444443 257899999987642 23333332 4457778888 67788888889988877554
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=1.4e-13 Score=108.74 Aligned_cols=196 Identities=10% Similarity=-0.055 Sum_probs=142.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe
Q psy4393 29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK 108 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 108 (247)
....+++. +++..++...++.|.+||..+++....+.. ......++++++++.+++...++.|.+||..+++....+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 35667774 344555556679999999999988777753 4567889998888554554478999999999988776665
Q ss_pred cCC-----ccEEEEEEcCCCCEEEEee-CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC--------
Q psy4393 109 GHS-----NYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-------- 174 (247)
Q Consensus 109 ~~~-----~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------- 174 (247)
... .....+.+ .++.++++.. .++.|.++|+.+++.+..+.... ....+.++|+|++++++..+
T Consensus 123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp CTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred cCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCcccc
Confidence 433 13345556 3444444433 47899999999998877776543 34678899999977776554
Q ss_pred --CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393 175 --GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 175 --g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
+.|.++|..+++....+..........++|+|+++.|+++.. .|.+||..+.+.
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 789999999888766654332335688999999999988765 899999876553
No 190
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.65 E-value=7.7e-15 Score=117.49 Aligned_cols=174 Identities=10% Similarity=0.035 Sum_probs=131.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCe---------EEE-EEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------FEK-TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
++..+++++...++++|+.++ +.+|+..+.. ... ....... |..++| +++.|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 688999999999999998874 5669754322 111 1223445 999999 89999988 8899999999
Q ss_pred CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393 99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 178 (247)
Q Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 178 (247)
.+.........+...+..+.+.+. .+++++.||.+.+||+..+.... +...|+|++|+|+| ++.|..||.++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 876544455556666777776654 38888999999999999876543 23579999999999 67788999999
Q ss_pred EEeCCCcee--eeeec-----c---CCCCCeEEEEECCCCCEEEEEE
Q psy4393 179 IWDTASGQC--LKTLI-----D---DDNPPVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 179 v~d~~~~~~--~~~~~-----~---~~~~~v~~~~~s~~~~~l~~~~ 215 (247)
+|+...++. .+.+. . .+...|..+.|.++++++++=+
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 998887764 44441 1 2457799999999999998743
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.65 E-value=2.5e-12 Score=103.25 Aligned_cols=206 Identities=10% Similarity=-0.014 Sum_probs=134.5
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEecCCCeEEEEEecc-------cCCeEEEEECCCCCEEEEEcC--CCe
Q psy4393 32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAWSSDSRLLVSGSD--DKT 92 (247)
Q Consensus 32 ~~~~s~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~ 92 (247)
.++++|||++++.+. .++.|.+||..+.+....+... ......+.|+|||++++++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999998875 3678999999887776665432 122457899999999988864 478
Q ss_pred EEEEECCCceEEEE-EecCCccEEEEEEcCCC-CEEEEeeC---------------------------------------
Q psy4393 93 LKIWELSSGKCLKT-LKGHSNYVFCCNFNPQS-NLIVSGSF--------------------------------------- 131 (247)
Q Consensus 93 i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~--------------------------------------- 131 (247)
|.++| .+++.+.. +..... +.+.|++ ..+++.+.
T Consensus 150 v~viD-~t~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPTC----YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCce----EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecC
Confidence 99999 98887766 432111 1111211 11222222
Q ss_pred --------CCCEEEEECCCCe--EEEeecC----------CCCCeEEEEECCCCCEEEEecC----------CCeEEEEe
Q psy4393 132 --------DESVRIWDVRTGK--CLKTLPA----------HSDPVSAVHFNRDGSLIVSSSY----------DGLCRIWD 181 (247)
Q Consensus 132 --------d~~i~v~d~~~~~--~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~v~d 181 (247)
.+.+.+.|+..+. .+..+.. .......+.++|++..++++.. .+.|.++|
T Consensus 225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID 304 (373)
T 2mad_H 225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT 304 (373)
T ss_pred CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence 3344444443221 1111110 0112334778999888777543 35799999
Q ss_pred CCCceeeeeeccCCCCCeEEEEECCCCC-EEEEEE-cCCeEEEEECCCcceEEE-EccCCccccee
Q psy4393 182 TASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSKVVTPAII-CSTPLNLNYFY 244 (247)
Q Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~ 244 (247)
+.+++.+..+.... ....++|+|||+ .++++. .++.|.+||..+.+.+.. ......|..|+
T Consensus 305 ~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~ 368 (373)
T 2mad_H 305 GLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLS 368 (373)
T ss_pred CCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEEE
Confidence 99998877774333 357799999999 777776 489999999999988766 45555566554
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=1.3e-12 Score=110.23 Aligned_cols=197 Identities=15% Similarity=0.076 Sum_probs=147.4
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC--CceEEEEEecCCccE
Q psy4393 37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS--SGKCLKTLKGHSNYV 114 (247)
Q Consensus 37 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~v 114 (247)
+.+.++++...++.|.++|..+++....+.. ...+..+.++|||+++++++.++.|.+||+. +.+.+..+..... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-A 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-C
Confidence 3344566677789999999999888877764 3356789999999999999999999999995 7777777765443 5
Q ss_pred EEEEEc----CCCCEEEEeeC-CCCEEEEECCCCeEEEeecCC-----------CCCeEEEEECCCCCE-EEEecCCCeE
Q psy4393 115 FCCNFN----PQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAH-----------SDPVSAVHFNRDGSL-IVSSSYDGLC 177 (247)
Q Consensus 115 ~~~~~~----~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~-l~~~~~dg~i 177 (247)
..+.++ |+|+++++++. ++.+.++|..+.+.+..+... ...+..+..++++.. ++....+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 678999 69998877654 588999999998887776532 115677888887664 4455667999
Q ss_pred EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEc
Q psy4393 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 235 (247)
.++|....+.+.............+.|+|+|++++++. .++.|.++|.++.+......
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 99998765433322222234467789999999988766 57899999999887554443
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=8.3e-13 Score=101.74 Aligned_cols=212 Identities=16% Similarity=0.073 Sum_probs=154.1
Q ss_pred EEEEEecCC-CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc-cCCeEEEEECCCCCEEEEEcC-CCeEEE
Q psy4393 19 LKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSD-DKTLKI 95 (247)
Q Consensus 19 ~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~v 95 (247)
...++..+. ..+.++.++|+|++++ +.++.|..||. +++.+..+... ...+.++.+.++|+.+++.+. ++.+..
T Consensus 27 ~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~ 103 (276)
T 3no2_A 27 IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILE 103 (276)
T ss_dssp EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEE
T ss_pred EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEE
Confidence 345555454 4688999999999888 34778999998 88888888764 346888999999999998877 778887
Q ss_pred EECCCceEEEEEecC------CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEE
Q psy4393 96 WELSSGKCLKTLKGH------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 169 (247)
Q Consensus 96 ~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 169 (247)
+|. +++.+..+... ......+...++++++++...++.|..||.. ++.+..+.... ...++...+++..++
T Consensus 104 vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v 180 (276)
T 3no2_A 104 VNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLV 180 (276)
T ss_dssp ECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred EeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEE
Confidence 886 56666555421 1223345678999999999999999999998 88888887643 345567889999999
Q ss_pred EecCCCeEEEEeCCCceeeeeeccCC-----CCCeEEEEECCCCCEEEEEEcC--------CeEEEEEC-CCcceEEEEc
Q psy4393 170 SSSYDGLCRIWDTASGQCLKTLIDDD-----NPPVSFVKFSPNGKYILAATLD--------NTLKLWDS-KVVTPAIICS 235 (247)
Q Consensus 170 ~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d--------g~i~vwd~-~~~~~~~~~~ 235 (247)
++..++.|..+|..+++.+-.+.... -.-+..++..++|..+++.... +..++++. .+++.+=.+.
T Consensus 181 ~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 181 ACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp ECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred EeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 88888899999999888776653221 1225778889999988887421 23345554 3445544444
Q ss_pred c
Q psy4393 236 T 236 (247)
Q Consensus 236 ~ 236 (247)
.
T Consensus 261 ~ 261 (276)
T 3no2_A 261 D 261 (276)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=1.5e-13 Score=108.94 Aligned_cols=181 Identities=10% Similarity=0.130 Sum_probs=123.7
Q ss_pred eEEEEECCCCCEEEEEeCC---------------------------CeEEEEecCCCeEEEEEecccCCeEEEEECCCCC
Q psy4393 30 VSSVKFSPNGEWLASSSAD---------------------------KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82 (247)
Q Consensus 30 v~~~~~s~~~~~l~~~~~d---------------------------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 82 (247)
+..++|+|||+.|+.++.+ ..|.+|+..+++....+.. . .+..+.|+|+|
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg- 182 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK- 182 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence 8899999999988876532 5688899888776344444 3 78899999999
Q ss_pred EEEEEcCCC-------eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC--------CCEEEEECCCCeEEE
Q psy4393 83 LLVSGSDDK-------TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD--------ESVRIWDVRTGKCLK 147 (247)
Q Consensus 83 ~l~~~~~d~-------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~ 147 (247)
.++++..+. ...+|.+.+++. ..+..+ ..+..+ +|+|+.++..+.+ ..|.+|| +++...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~ 256 (347)
T 2gop_A 183 IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG 256 (347)
T ss_dssp EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence 777765432 334443334443 333333 444443 8999988877644 3578888 555444
Q ss_pred eecCCCCCeEE-EEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeE-EEEEC
Q psy4393 148 TLPAHSDPVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL-KLWDS 225 (247)
Q Consensus 148 ~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~vwd~ 225 (247)
....+...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+... ...+..++|+| .++++++.++.. .||..
T Consensus 257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~-~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKG-RHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECS-SSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecC-CCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 44455667775 8999 88 88889999999999 7755543 33322 55788899999 677777776654 66665
Q ss_pred C
Q psy4393 226 K 226 (247)
Q Consensus 226 ~ 226 (247)
+
T Consensus 330 ~ 330 (347)
T 2gop_A 330 D 330 (347)
T ss_dssp S
T ss_pred C
Confidence 5
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=2.8e-11 Score=93.58 Aligned_cols=200 Identities=13% Similarity=0.119 Sum_probs=142.5
Q ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE-EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 101 (247)
+..+...+.+++++++|++.++...++.|..++.. ++.... .......+..+++.++++.+++...++.|..+|.. +
T Consensus 57 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 134 (300)
T 2qc5_A 57 VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G 134 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C
Confidence 33344678999999999977776667889999976 554322 22233568899999999988887778899999987 5
Q ss_pred eEEEE-EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe-ecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393 102 KCLKT-LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 179 (247)
Q Consensus 102 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 179 (247)
+.... +.........+.++++++++++...++.|..+|. +++.... .......+..+++++++.++++....+.|.+
T Consensus 135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 54322 2223456788999999997777666788999998 4543332 2233456789999999988777777788999
Q ss_pred EeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 180 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
||. +++............+..++++++|++.++...++.|..||..
T Consensus 214 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 214 ITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred EcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 998 4443332222233457889999999866666567899999984
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=4.4e-13 Score=116.40 Aligned_cols=198 Identities=13% Similarity=0.010 Sum_probs=138.4
Q ss_pred eEEEEECCCCCEEEEEeCCCe----------------EEEEecCCCeEE--EEEec--ccCCeEEEEECCCCCEEEEEcC
Q psy4393 30 VSSVKFSPNGEWLASSSADKL----------------IKIWGAYDGKFE--KTISG--HKLGISDVAWSSDSRLLVSGSD 89 (247)
Q Consensus 30 v~~~~~s~~~~~l~~~~~dg~----------------v~iw~~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~l~~~~~ 89 (247)
+.+++|+|||+.|+.+..++. |++|++.++... ..... +...+..+.|+|||++|+..+.
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 567899999999998877655 999998766522 22232 2344778999999999887654
Q ss_pred -----CCeEEEEECCC------ce-EEEEEecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCCe--EEEeecC
Q psy4393 90 -----DKTLKIWELSS------GK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGK--CLKTLPA 151 (247)
Q Consensus 90 -----d~~i~v~d~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~--~~~~~~~ 151 (247)
+..|.+||+.+ +. ....+..+...+.. .|+|++..++..+.. +.|.+||+.++. ....+..
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 331 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP 331 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence 56899999976 42 34455555544444 478888887766543 359999998764 1234444
Q ss_pred CCC--CeEEEEECCCCCEEEEecCCCe--EEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE----cCCeEEEE
Q psy4393 152 HSD--PVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLW 223 (247)
Q Consensus 152 ~~~--~i~~~~~~~~~~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vw 223 (247)
+.. .+..+.|++++.++++...++. |.+||+.+++....+... ...+..++++|+++.++... ..++|.+|
T Consensus 332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~ 410 (710)
T 2xdw_A 332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC 410 (710)
T ss_dssp CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEE
Confidence 433 5778889877778888888874 666787667655554433 45677889999998776443 34799999
Q ss_pred ECCCcc
Q psy4393 224 DSKVVT 229 (247)
Q Consensus 224 d~~~~~ 229 (247)
|..+++
T Consensus 411 d~~tg~ 416 (710)
T 2xdw_A 411 DLTKEE 416 (710)
T ss_dssp ETTSSS
T ss_pred ECCCCc
Confidence 998766
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=3e-11 Score=93.43 Aligned_cols=203 Identities=9% Similarity=0.085 Sum_probs=146.3
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE-EecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
..+.+......+.+++++++|+..++...++.|.+|+.. ++.... +......+..+++.++++.+++...++.|..+|
T Consensus 11 ~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 11 EEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLS 89 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence 344455556788999999999987776678999999987 554332 222235688999999999888777788999999
Q ss_pred CCCceEEEE-EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEE-eecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393 98 LSSGKCLKT-LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDG 175 (247)
Q Consensus 98 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg 175 (247)
.. ++.... .......+..+.+++++.++++...++.|..+|.. ++... .+......+..++++++++++++...++
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 167 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNN 167 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred CC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCC
Confidence 87 554321 22233567889999999988887778889999987 55432 2233345688999999999777776678
Q ss_pred eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225 (247)
Q Consensus 176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 225 (247)
.|..+|. +++...............++++++|.+.++....+.|.+||.
T Consensus 168 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 168 SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 9999998 555433222223345788999999987766666788999998
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=2.5e-13 Score=118.49 Aligned_cols=197 Identities=16% Similarity=0.131 Sum_probs=130.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC---------
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSAD-----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK--------- 91 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------- 91 (247)
|...+.+++|||||++|+.+..+ ..|++||+.+++..... .+...+..++|+|| +.|+.+..++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33467889999999999876543 35999999988765432 12222357889999 9888877654
Q ss_pred -----eEEEEECCCceE--EEEEec--CCccEEEEEEcCCCCEEEEeeCCC-----CEEEEECCCCe-E-EEeecCCCCC
Q psy4393 92 -----TLKIWELSSGKC--LKTLKG--HSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGK-C-LKTLPAHSDP 155 (247)
Q Consensus 92 -----~i~v~d~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~-~-~~~~~~~~~~ 155 (247)
.|++|++.++.. ...+.. +...+..+.|+|+|+.++..+.++ .|++||+.++. . ...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 388999876642 222322 223477889999999888776543 79999998762 1 3444444444
Q ss_pred eEEEEECCCCCEEEEecC----CCeEEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 156 VSAVHFNRDGSLIVSSSY----DGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 156 i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
.... ++|+|..|+..+. ++.|.+||+.++ .....+.......+..++++ ++.++++...|+..+||..+
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 4444 3488888877664 346999998874 23344444444456667777 56677778888877776543
No 199
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.57 E-value=7.7e-12 Score=101.66 Aligned_cols=200 Identities=12% Similarity=0.057 Sum_probs=137.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC--eEEEEECCCceEEE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLK 105 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~ 105 (247)
.....++|+++++++++...++.|++||..++.......... ... ++|+++++.++++..++ .|.+++...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 457899999999977777777899999998777665554433 233 89999999988887765 78888887654333
Q ss_pred EE---ec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe----ecCCCCC--eEEEEECCC-CCEEEEecCC
Q psy4393 106 TL---KG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT----LPAHSDP--VSAVHFNRD-GSLIVSSSYD 174 (247)
Q Consensus 106 ~~---~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~--i~~~~~~~~-~~~l~~~~~d 174 (247)
.+ .. ......+++++|+...|+.+..++.|+.||..++..... ....... ...++++|+ +.++++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 12 334567789999555555566788899999987653222 1111122 238999995 6666666678
Q ss_pred CeEEEEeCCCceeeeeeccCC--------------CCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceE
Q psy4393 175 GLCRIWDTASGQCLKTLIDDD--------------NPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPA 231 (247)
Q Consensus 175 g~i~v~d~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~ 231 (247)
+.|..|+.... ...+.... -.....++++|+|+++++-. .+++|+.||..++...
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence 89999987643 22221111 12357899999999777766 7889999997666543
No 200
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.57 E-value=2.7e-11 Score=102.20 Aligned_cols=196 Identities=11% Similarity=0.052 Sum_probs=140.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecC--CCeEEEEEecccCCeEEEEEC----CCCCEEEEEcC-CCeEEEEECCC
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDVAWS----SDSRLLVSGSD-DKTLKIWELSS 100 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~v~d~~~ 100 (247)
..+..+.|+|||+++++++.++.|.+||.. +.+....+... .....++|+ |||++++++.. ++.+.++|..+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 356789999999999999999999999995 66766666543 345789999 69998877665 58999999999
Q ss_pred ceEEEEEecC-----------CccEEEEEEcCCCCEE-EEeeCCCCEEEEECCCCeEE--EeecCCCCCeEEEEECCCCC
Q psy4393 101 GKCLKTLKGH-----------SNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCL--KTLPAHSDPVSAVHFNRDGS 166 (247)
Q Consensus 101 ~~~~~~~~~~-----------~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~ 166 (247)
.+.+..+... ...+..+..++++..+ +.....|.|.++|......+ ..+.. ......+.|+|+++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr 354 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHR 354 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSC
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec-cccccCceECCCCC
Confidence 8887766422 1256677788876554 44456789999998765432 22322 33467789999999
Q ss_pred EEEEec-CCCeEEEEeCCCceeeeeecc-C---CC-CCeEEEEECCCCCEEE-EEE-cCCeEEEEECCC
Q psy4393 167 LIVSSS-YDGLCRIWDTASGQCLKTLID-D---DN-PPVSFVKFSPNGKYIL-AAT-LDNTLKLWDSKV 227 (247)
Q Consensus 167 ~l~~~~-~dg~i~v~d~~~~~~~~~~~~-~---~~-~~v~~~~~s~~~~~l~-~~~-~dg~i~vwd~~~ 227 (247)
+++++. .++.|.++|+.+++....+.. . +. .... + ++|++..+. ++. .++.|.++|...
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 887655 578999999999987665543 2 11 1222 2 688855554 443 468999999877
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=3.4e-12 Score=101.89 Aligned_cols=211 Identities=13% Similarity=0.093 Sum_probs=141.7
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEecCCCeEEEEEeccc-------CCeEEEEECCCCCEEEEEcC--CCe
Q psy4393 32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGHK-------LGISDVAWSSDSRLLVSGSD--DKT 92 (247)
Q Consensus 32 ~~~~s~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~ 92 (247)
.++++|||++++.++ .++.|.+||..+.+....+.... .....+.++|||++++++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 499999999887765 35789999999988877765321 23556899999999887763 689
Q ss_pred EEEEECCCceEEEEEecCCc-cE------EEEEEcCCCCEE--------------------------------------E
Q psy4393 93 LKIWELSSGKCLKTLKGHSN-YV------FCCNFNPQSNLI--------------------------------------V 127 (247)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~-~v------~~~~~~~~~~~l--------------------------------------~ 127 (247)
|.++|+.+++.+..+..... .+ .-+..+++|+++ +
T Consensus 162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~ 241 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV 241 (386)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence 99999999877665532100 00 001122222222 2
Q ss_pred EeeCCCCEEEEECCCCe--EEEeecC----------CCCCeEEEEECCCCCEEEEecC----------CCeEEEEeCCCc
Q psy4393 128 SGSFDESVRIWDVRTGK--CLKTLPA----------HSDPVSAVHFNRDGSLIVSSSY----------DGLCRIWDTASG 185 (247)
Q Consensus 128 ~~~~d~~i~v~d~~~~~--~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~v~d~~~~ 185 (247)
..+.+|.+++.|+.++. .+..+.. ..+....+++++++..+++... ...|.++|+.++
T Consensus 242 ~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~ 321 (386)
T 3sjl_D 242 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG 321 (386)
T ss_dssp EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC
Confidence 23334555555554332 1111110 0112233677888888777642 247999999999
Q ss_pred eeeeeeccCCCCCeEEEEECCCCC-EEEEEE-cCCeEEEEECCCcceEEEEccCCccccee
Q psy4393 186 QCLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSKVVTPAIICSTPLNLNYFY 244 (247)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 244 (247)
+.++.+.... ....+++++|++ +|+++. .++.|.++|..+.+.+..+..+..+|+|+
T Consensus 322 kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~ 380 (386)
T 3sjl_D 322 ERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI 380 (386)
T ss_dssp CEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred eEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeE
Confidence 9888775443 456899999997 666654 58999999999999999999999999886
No 202
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.57 E-value=1.9e-12 Score=103.53 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=85.5
Q ss_pred CCCEEEEEe------CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCCeEEEEECCCc
Q psy4393 38 NGEWLASSS------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWELSSG 101 (247)
Q Consensus 38 ~~~~l~~~~------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d~~~~ 101 (247)
++++++.+. .|+.|.+||..+++....+.....+ .++|+||+++++++. .++.|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 566666543 3679999999888887777665444 899999999998876 2567999999988
Q ss_pred eEEEEEecC------CccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEe-ec
Q psy4393 102 KCLKTLKGH------SNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKT-LP 150 (247)
Q Consensus 102 ~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~ 150 (247)
+.+..+... ......+.++|++++++++.. ++.|.+||+.+++.+.. +.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 877766532 123456789999999998864 57899999999987776 44
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=1.1e-11 Score=96.81 Aligned_cols=210 Identities=12% Similarity=0.124 Sum_probs=140.0
Q ss_pred ecCCCCeEEEEECCCCCEEEE-------EeCCCeEEEEecCCCeEEEEEe----cccCCeEEEEECCC-CCEEEEEcCCC
Q psy4393 24 AGHTKAVSSVKFSPNGEWLAS-------SSADKLIKIWGAYDGKFEKTIS----GHKLGISDVAWSSD-SRLLVSGSDDK 91 (247)
Q Consensus 24 ~~h~~~v~~~~~s~~~~~l~~-------~~~dg~v~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~d~ 91 (247)
........+++|+++|.++++ ...++.|.+|+..+++...... ++...+..++++++ ++++++.. ..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 444556789999999988777 5678899999987766543222 13456889999999 76555554 44
Q ss_pred eEEEEECCCceEEEE-Eec----CCccEEEEEEcCCCCEEEEeeCC---------------CCEEEEECCCCeEEEeecC
Q psy4393 92 TLKIWELSSGKCLKT-LKG----HSNYVFCCNFNPQSNLIVSGSFD---------------ESVRIWDVRTGKCLKTLPA 151 (247)
Q Consensus 92 ~i~v~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~v~d~~~~~~~~~~~~ 151 (247)
.|.+||.. ++.... ... ....+..+.++++++++++...+ +.|..||.. ++..... .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c
Confidence 78889988 654332 211 11346789999999988876654 567777765 4433222 2
Q ss_pred CCCCeEEEEEC----CCCCEEEE-ecCCCeEEEEeCC-Cceee--eee--ccCCC-CCeEEEEECCCCCEEEEEEcCCeE
Q psy4393 152 HSDPVSAVHFN----RDGSLIVS-SSYDGLCRIWDTA-SGQCL--KTL--IDDDN-PPVSFVKFSPNGKYILAATLDNTL 220 (247)
Q Consensus 152 ~~~~i~~~~~~----~~~~~l~~-~~~dg~i~v~d~~-~~~~~--~~~--~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i 220 (247)
+......++++ |+++.+++ ...++.|.+||.. +++.. ..+ ..... .....++++++|++.++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 22345788999 99975554 4567899999976 34321 111 11121 346779999999988888888999
Q ss_pred EEEECCCcceEEEEccC
Q psy4393 221 KLWDSKVVTPAIICSTP 237 (247)
Q Consensus 221 ~vwd~~~~~~~~~~~~~ 237 (247)
.+||.++++.+..+..+
T Consensus 250 ~~~d~~~g~~~~~~~~~ 266 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCP 266 (314)
T ss_dssp EEECTTCBSCSEEEECS
T ss_pred EEEcCCCCcEeEEEeCC
Confidence 99998865544444443
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.54 E-value=7.9e-12 Score=97.54 Aligned_cols=197 Identities=12% Similarity=0.189 Sum_probs=134.4
Q ss_pred CCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCeEEEE-Eec----ccCCeEEEEECCCCCEEEEEcCC---------
Q psy4393 26 HTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKT-ISG----HKLGISDVAWSSDSRLLVSGSDD--------- 90 (247)
Q Consensus 26 h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d--------- 90 (247)
+...+.+++++++ |+++++. ..+.|.+|+.. ++.... ... ....+.+++++++|+.+++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4467889999999 7655544 44578899987 654332 211 12347899999999988777654
Q ss_pred ------CeEEEEECCCceEEEEEecCCccEEEEEEc----CCCCEEEEe-eCCCCEEEEECC-CCe-----EEEeecCCC
Q psy4393 91 ------KTLKIWELSSGKCLKTLKGHSNYVFCCNFN----PQSNLIVSG-SFDESVRIWDVR-TGK-----CLKTLPAHS 153 (247)
Q Consensus 91 ------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~i~v~d~~-~~~-----~~~~~~~~~ 153 (247)
+.|..++.. ++..... ........+.++ |+++.++.+ ..++.|.+||+. .++ ....+..+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred cccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence 567777765 4433322 222345678899 998655444 567889999986 443 222333332
Q ss_pred -CCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCC
Q psy4393 154 -DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKV 227 (247)
Q Consensus 154 -~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~ 227 (247)
.....++++++|.++++...++.|.+||..+++....+... ...+..++|+|+++.|+.++ .++.|..|+...
T Consensus 225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 45788999999998888777889999999866655444322 24578899999999666554 568999999865
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.54 E-value=6.7e-11 Score=91.95 Aligned_cols=208 Identities=10% Similarity=0.101 Sum_probs=136.5
Q ss_pred cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393 25 GHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC 103 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 103 (247)
.+..---+..|+|++. ++++...++.|..|+..++... .+ .....+.+++++++|+++++. +..|.+||.++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE
Confidence 3444556889999655 5556667889999998776542 22 234678999999999965554 56788999987765
Q ss_pred EEEEec----CCccEEEEEEcCCCCEEEEeeCC---------CCEEEEECCC-CeEEEeecCCCCCeEEEEECCCCCEEE
Q psy4393 104 LKTLKG----HSNYVFCCNFNPQSNLIVSGSFD---------ESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIV 169 (247)
Q Consensus 104 ~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~ 169 (247)
...... ....+..+.++|+|+++++.... ..-.+|.+.. ++. ..+.........++|+|+++.|+
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEE
Confidence 432221 12347789999999977754321 2234444432 332 22222223457899999998665
Q ss_pred -EecCCCeEEEEeC--CCceee--eeec--cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 170 -SSSYDGLCRIWDT--ASGQCL--KTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 170 -~~~~dg~i~v~d~--~~~~~~--~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
+.+.++.|.+||+ .++... ..+. .........++++++|++.++...++.|.+||.++++.+..+..|
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 4556789999986 444321 1111 111234577999999987777777889999999887777776665
No 206
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=5.3e-13 Score=115.63 Aligned_cols=199 Identities=11% Similarity=-0.022 Sum_probs=131.2
Q ss_pred EEEEECCCCCEEEEEeCCCe-------------EEEEecCCCeE--EEEEe--cccCCeEEEEECCCCCEEEEEcCCC--
Q psy4393 31 SSVKFSPNGEWLASSSADKL-------------IKIWGAYDGKF--EKTIS--GHKLGISDVAWSSDSRLLVSGSDDK-- 91 (247)
Q Consensus 31 ~~~~~s~~~~~l~~~~~dg~-------------v~iw~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~-- 91 (247)
..++|+|||+.|+.++.+.. |++|++.++.. ..... .+...+..+.|+|||++|+..+.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 67899999999998887665 99999877652 22222 2335688999999999988776655
Q ss_pred --eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEee---CCCCEEEEECCCCeE--EEee-cCC-CCCeEEEEEC
Q psy4393 92 --TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS---FDESVRIWDVRTGKC--LKTL-PAH-SDPVSAVHFN 162 (247)
Q Consensus 92 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~--~~~~-~~~-~~~i~~~~~~ 162 (247)
.|.+++..+++. ..+..+...+....+ +++.+++... .++.|.+||+.++.. ...+ ..+ ...+..+.++
T Consensus 251 ~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 251 ENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp EEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred ceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence 677777655543 334444444455555 5555444443 257899999977642 2233 222 3457778887
Q ss_pred CCCCEEEEecCCCeEEEEeCC-CceeeeeeccCCCCCeEEEEECCCCCEEEEEE----cCCeEEEEECCCcceEE
Q psy4393 163 RDGSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLWDSKVVTPAI 232 (247)
Q Consensus 163 ~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~~~ 232 (247)
++.++++...++..++|... .++....+.......+..++++|+++.++... ..++|.+||..+++..+
T Consensus 329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~ 402 (695)
T 2bkl_A 329 -GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSEL 402 (695)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence 66778888888887777543 34444444333344566788899998777443 34789999998776443
No 207
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.52 E-value=1.7e-11 Score=95.67 Aligned_cols=207 Identities=11% Similarity=0.024 Sum_probs=135.2
Q ss_pred EecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393 23 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 23 ~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 101 (247)
+........+..|+|+|+ ++++...++.|..|+. ++.. ..+......+..++++++|+++++...++.|.+|+.. +
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 444555677899999998 5566667889999987 4443 3444455668899999999977776667889999976 5
Q ss_pred eEEEEEecC----CccEEEEEEcCCCCEEEE----eeC-------------CCCEEEEECCCCeEEEeecCCCCCeEEEE
Q psy4393 102 KCLKTLKGH----SNYVFCCNFNPQSNLIVS----GSF-------------DESVRIWDVRTGKCLKTLPAHSDPVSAVH 160 (247)
Q Consensus 102 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 160 (247)
+........ ...+..+.++++|+++++ |.. .+.|..+|..+++..... .......++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~ 194 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLA 194 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceE
Confidence 432221111 123456889999998886 332 245778887666543322 334567899
Q ss_pred ECCCCCEEEEecCC------CeEEEEeCCCceee--eeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393 161 FNRDGSLIVSSSYD------GLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI 232 (247)
Q Consensus 161 ~~~~~~~l~~~~~d------g~i~v~d~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 232 (247)
|+|+++.|+++... +.|.+|++...... ..+..........++++++|++. +++. +.|.+||.+ ++.+.
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~-~gv~~~~~~-g~~~~ 271 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSG-TGVCVFDSD-GQLLG 271 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCS-SEEEEECTT-SCEEE
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecC-CcEEEECCC-CCEEE
Confidence 99999987776654 68999998654311 11211112223458899999944 4444 459999984 44544
Q ss_pred EEccC
Q psy4393 233 ICSTP 237 (247)
Q Consensus 233 ~~~~~ 237 (247)
.+..+
T Consensus 272 ~~~~~ 276 (305)
T 3dr2_A 272 HIPTP 276 (305)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 55444
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.51 E-value=4.1e-11 Score=93.18 Aligned_cols=187 Identities=14% Similarity=0.120 Sum_probs=126.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc----cCCeEEEEECCCCCEEEEEcCC---------Ce
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVSGSDD---------KT 92 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d---------~~ 92 (247)
....+.+++++++|+++++ . ++.|.+||..+++........ ...+.+++++|+|+++++.... ..
T Consensus 52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 3567899999999996554 3 567999998877654433321 2347889999999977654321 22
Q ss_pred EEEEECCC-ceEEEEEecCCccEEEEEEcCCCCEEE-EeeCCCCEEEEEC--CCCeE-----EEeecCCCCCeEEEEECC
Q psy4393 93 LKIWELSS-GKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWDV--RTGKC-----LKTLPAHSDPVSAVHFNR 163 (247)
Q Consensus 93 i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~--~~~~~-----~~~~~~~~~~i~~~~~~~ 163 (247)
-.+|.+.. ++.. .+.........++|+|+++.++ +.+.++.|.+||+ .++.. ...+..+......+++++
T Consensus 130 ~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~ 208 (297)
T 3g4e_A 130 GALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA 208 (297)
T ss_dssp EEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT
T ss_pred cEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC
Confidence 34444432 3322 2222333457899999998665 4556788999987 45532 122222334568899999
Q ss_pred CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEEC-CCCCEEEEEEc
Q psy4393 164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATL 216 (247)
Q Consensus 164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 216 (247)
+|.+.++....+.|..||..+++.+..+... ...+++++|. |+++.|+.++.
T Consensus 209 ~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 209 EGKLWVACYNGGRVIRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TSCEEEEEETTTEEEEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCEEEEEcCCCEEEEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEcC
Confidence 9988887777888999999988877665433 3467899998 89888776664
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.51 E-value=1.4e-11 Score=99.89 Aligned_cols=201 Identities=10% Similarity=0.065 Sum_probs=134.2
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEecCCCeEEEEEecc-------cCCeEEEEECCCCCEEEEEcC--CCe
Q psy4393 32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAWSSDSRLLVSGSD--DKT 92 (247)
Q Consensus 32 ~~~~s~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~ 92 (247)
.++++|||++|+.+. .++.|.++|..+.+....+.-. ......+.++|||++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 899999999888775 3678999999998887776532 123456789999999988764 578
Q ss_pred EEEEECCCceEEEEEecCCc-------cEEEEEEcCCCCE-------------------------------------EEE
Q psy4393 93 LKIWELSSGKCLKTLKGHSN-------YVFCCNFNPQSNL-------------------------------------IVS 128 (247)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~-------------------------------------l~~ 128 (247)
|.+.|+.+.+.+..+..... .-..+.+++++++ ++.
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 99999999887766653211 0001223333333 333
Q ss_pred eeCCCCEEEEECCCCeEE--EeecCC----------CCCeEEEEECCCCCEEEEecC----------CCeEEEEeCCCce
Q psy4393 129 GSFDESVRIWDVRTGKCL--KTLPAH----------SDPVSAVHFNRDGSLIVSSSY----------DGLCRIWDTASGQ 186 (247)
Q Consensus 129 ~~~d~~i~v~d~~~~~~~--~~~~~~----------~~~i~~~~~~~~~~~l~~~~~----------dg~i~v~d~~~~~ 186 (247)
....+.+.+.|+...... ..+... ......++++|++..+++... .+.|.++|+.+.+
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 333444555555432211 011000 011122688999887776542 3579999999999
Q ss_pred eeeeeccCCCCCeEEEEECCCCC-EEEEEE-cCCeEEEEECCCcceEEEE
Q psy4393 187 CLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 187 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~ 234 (247)
.+.++.... ....++|+|||+ +++++. .++.|.|+|..+.+.+..+
T Consensus 362 vv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 362 RINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 887774332 246789999999 888887 5899999999999988775
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=6.7e-11 Score=94.76 Aligned_cols=134 Identities=12% Similarity=0.069 Sum_probs=108.5
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL 104 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 104 (247)
.+.. |+.++| +++.|+++ .++.|++||+...........+..++.++.+.+.. ++++..||.+.+||++++...
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~ 159 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK 159 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc
Confidence 3566 999999 99999988 88999999987665555666677788888877653 888899999999999987654
Q ss_pred EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE--EEee------c---CCCCCeEEEEECCCCCEEEE
Q psy4393 105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC--LKTL------P---AHSDPVSAVHFNRDGSLIVS 170 (247)
Q Consensus 105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~~ 170 (247)
. ....|.+++|+|.| ++.|..||.+++|+...++. ...+ . .|...|.++.|.+++.++++
T Consensus 160 ~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 160 Q----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp E----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred c----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 3 23569999999999 67889999999999887774 4455 2 36678999999999988876
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.47 E-value=7.4e-12 Score=108.47 Aligned_cols=199 Identities=16% Similarity=0.180 Sum_probs=129.7
Q ss_pred cCCCCeEEEEECCCCCEEEEEe-----CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC--------
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK-------- 91 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------- 91 (247)
+|...+..++|||||++||.+. ....|++||+.+++...... .......++|+ |++.|+.+..+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3556788999999999988532 22479999999887654311 11113467899 999988887663
Q ss_pred -----eEEEEECCCceE--EEEEec---CCccEEEEEEcCCCCEEEEeeC----CCCEEEEECCCCe-EEEeecCCCCCe
Q psy4393 92 -----TLKIWELSSGKC--LKTLKG---HSNYVFCCNFNPQSNLIVSGSF----DESVRIWDVRTGK-CLKTLPAHSDPV 156 (247)
Q Consensus 92 -----~i~v~d~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~-~~~~~~~~~~~i 156 (247)
.|++|++.++.. ...+.. +......+.|+|+++.++.... ...++++|+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 499999877542 222222 2334678899999998865432 2479999997763 344454555544
Q ss_pred EEEEECCCCCEEE-EecCC---CeEEEEeCCCcee--eeeeccCCCCCeEEEEECCCCCEEEEEEcCC---eEEEEECCC
Q psy4393 157 SAVHFNRDGSLIV-SSSYD---GLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDSKV 227 (247)
Q Consensus 157 ~~~~~~~~~~~l~-~~~~d---g~i~v~d~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~ 227 (247)
... +++++..|+ .+..+ +.|..+|+.++.. ...+..+... +. .|++++++|+....++ .|++||.+.
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 444 556666554 44333 5799999987653 2333333333 33 8899999888776544 789999875
Q ss_pred cc
Q psy4393 228 VT 229 (247)
Q Consensus 228 ~~ 229 (247)
..
T Consensus 360 ~~ 361 (693)
T 3iuj_A 360 KR 361 (693)
T ss_dssp CE
T ss_pred Ce
Confidence 43
No 212
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.46 E-value=2.8e-14 Score=114.57 Aligned_cols=188 Identities=14% Similarity=0.042 Sum_probs=107.1
Q ss_pred CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCc-cEE-
Q psy4393 38 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSN-YVF- 115 (247)
Q Consensus 38 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~- 115 (247)
++..+++++.||.|+.||..+++....+.. ..+.+..+..++..+++++.|+.++.||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577888999999999999999998888765 3444444556777788888999999999988876554433211 110
Q ss_pred EEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC
Q psy4393 116 CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195 (247)
Q Consensus 116 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 195 (247)
...+. .+..+++++.++.++.||.++|+.+..+..+. ...++|++..+++++.++.+..||.++++.+-.+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 00111 34567788889999999999998877765543 13456688889999999999999999887543322110
Q ss_pred CCCeEEEEECCCC---CEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393 196 NPPVSFVKFSPNG---KYILAATLDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 196 ~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~ 235 (247)
.....++++. ..+++++.||.|..||.++++.+-.+.
T Consensus 161 ---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 161 ---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp ---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred ---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 1112233432 567788899999999998877654433
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.45 E-value=1.3e-11 Score=107.65 Aligned_cols=197 Identities=14% Similarity=0.070 Sum_probs=129.4
Q ss_pred EEEEECCCCCEEEEEeCCCe--------------EEEEecCCCeE--EEEEecc--cCCeEEEEECCCCCEEEEEcCC--
Q psy4393 31 SSVKFSPNGEWLASSSADKL--------------IKIWGAYDGKF--EKTISGH--KLGISDVAWSSDSRLLVSGSDD-- 90 (247)
Q Consensus 31 ~~~~~s~~~~~l~~~~~dg~--------------v~iw~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-- 90 (247)
..++|+|| +.|+.+..++. |++|+..++.. ...+... ...+..+.|+|||++|+..+.+
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence 46889999 98887766543 88888765542 2223222 2247889999999988877644
Q ss_pred ---CeEEEEECCCc--eEEEEEecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCC--eEEEeecCCCCCeEEE
Q psy4393 91 ---KTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTG--KCLKTLPAHSDPVSAV 159 (247)
Q Consensus 91 ---~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~--~~~~~~~~~~~~i~~~ 159 (247)
..|++||+.++ +....+..+....... +.|++..++..+.+ +.|.+||+.++ .....+..+...+..+
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~ 369 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESV 369 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEE
T ss_pred CCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEE
Confidence 38999999876 3134454444444443 34888888877653 45999999874 3333344444456677
Q ss_pred EECCCCCEEEEecCCCeEEEEeCC-CceeeeeeccCCCCCeEEEEECCCCCEEEEEE----cCCeEEEEECCCcce
Q psy4393 160 HFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLWDSKVVTP 230 (247)
Q Consensus 160 ~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~ 230 (247)
.++ ++.++++...++..++|... +++....+.......+..++++|+++.|+... ..++|.+||..+++.
T Consensus 370 ~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 370 GIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 776 55677778888876666433 34444444333345678899999988666432 347899999887664
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.43 E-value=6e-10 Score=87.77 Aligned_cols=201 Identities=14% Similarity=0.037 Sum_probs=131.8
Q ss_pred CeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 29 AVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 29 ~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
-..+.+|+|++. ++++...++.|..|+..++... .+. ....+.++.|+++|+++++. .+ .|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 356789999755 5556667789999998776543 232 34568999999999877665 33 4889999877654322
Q ss_pred ec----CCccEEEEEEcCCCCEEEEeeC------CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCe
Q psy4393 108 KG----HSNYVFCCNFNPQSNLIVSGSF------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGL 176 (247)
Q Consensus 108 ~~----~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~ 176 (247)
.. ....+..+.++|+|+++++... .+.|..+| +++.. .+.........++|+|+++.++.+ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1235788999999997765532 24566666 45432 222222346789999999866544 55789
Q ss_pred EEEEeCC--Cc-eee--eee--ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 177 CRIWDTA--SG-QCL--KTL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 177 i~v~d~~--~~-~~~--~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
|.+||.. ++ +.. ..+ ..........++++++|.+.++...++.|.+||. .++.+..+..+
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence 9999985 54 311 111 1112234567899999987777767789999998 44444444444
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.43 E-value=4.2e-11 Score=95.52 Aligned_cols=206 Identities=10% Similarity=-0.014 Sum_probs=132.7
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEecCCCeEEEEEecc-------cCCeEEEEECCCCCEEEEEcC--CCe
Q psy4393 32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAWSSDSRLLVSGSD--DKT 92 (247)
Q Consensus 32 ~~~~s~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~ 92 (247)
.+.++|||++++.+. .++.|.+||..+.+....+... ......+.++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999988875 3688999999999988887543 123457899999999888764 457
Q ss_pred EEE--EECCCceEEEEEecC------------------CccEEEEEE--------------------------cCCCCEE
Q psy4393 93 LKI--WELSSGKCLKTLKGH------------------SNYVFCCNF--------------------------NPQSNLI 126 (247)
Q Consensus 93 i~v--~d~~~~~~~~~~~~~------------------~~~v~~~~~--------------------------~~~~~~l 126 (247)
+.+ +|..+ +..+... .+.+..+.. .+++..+
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 888 88765 2222110 000000110 2223333
Q ss_pred EEeeCCCCEEEEECCCCe--EEEeecCC----------CCCeEEEEECCCCCEEEEecC---------CCeEEEEeCCCc
Q psy4393 127 VSGSFDESVRIWDVRTGK--CLKTLPAH----------SDPVSAVHFNRDGSLIVSSSY---------DGLCRIWDTASG 185 (247)
Q Consensus 127 ~~~~~d~~i~v~d~~~~~--~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~---------dg~i~v~d~~~~ 185 (247)
+..+. +.+.+.|+.... .+..+... ......+.++|+++.++++.. ++.+.++|+.+.
T Consensus 226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence 33334 667777765432 22222111 011112679999998876543 235669999999
Q ss_pred eeeeeeccCCCCCeEEEEECCCCCE-EEEEE-cCCeEEEEECCCcceEEEEccCCcccce
Q psy4393 186 QCLKTLIDDDNPPVSFVKFSPNGKY-ILAAT-LDNTLKLWDSKVVTPAIICSTPLNLNYF 243 (247)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 243 (247)
+.+..+.... ....++|+|||++ +++.. .++.|.|+|..+.+.+..+.....+..|
T Consensus 305 ~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i 362 (368)
T 1mda_H 305 QTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESL 362 (368)
T ss_dssp CEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEE
T ss_pred eEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEE
Confidence 8877664333 3567999999985 55555 5899999999999988887766655544
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=2.1e-10 Score=89.47 Aligned_cols=190 Identities=12% Similarity=0.089 Sum_probs=124.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc----cCCeEEEEECCCCCEEEE----EcC-------
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVS----GSD------- 89 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~------- 89 (247)
.+...+..++++++|+++++...++.|.+|+.. ++........ ...+.++++.++|+.+++ +..
T Consensus 83 ~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~ 161 (305)
T 3dr2_A 83 DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCP 161 (305)
T ss_dssp ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCC
T ss_pred CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccc
Confidence 455678899999999977665556789999875 5433222111 134678999999998876 331
Q ss_pred ------CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC------CCEEEEECCCCeE--EEee-cCCCC
Q psy4393 90 ------DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKC--LKTL-PAHSD 154 (247)
Q Consensus 90 ------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~--~~~~-~~~~~ 154 (247)
.+.|..+|..+++..... .......++|+|+++.++.+... +.|++||+..+.. ...+ ....+
T Consensus 162 ~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 162 ADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp CCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred cccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 246777887666543322 33345778999999977776654 6899999875531 1111 11233
Q ss_pred CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEE
Q psy4393 155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 222 (247)
Q Consensus 155 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 222 (247)
....++++++|++.+ ++.+ .|.+|+.. ++.+..+.... .+..++|+|+++.|..++.++..++
T Consensus 240 ~pdgi~~d~~G~lwv-~~~~-gv~~~~~~-g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWS-SSGT-GVCVFDSD-GQLLGHIPTPG--TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CCCSEEECTTSCEEE-CCSS-EEEEECTT-SCEEEEEECSS--CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCCeEEECCCCCEEE-ecCC-cEEEECCC-CCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 445688999999554 4444 49999984 55555544333 3677899999999988887644443
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.41 E-value=3.6e-10 Score=91.86 Aligned_cols=191 Identities=13% Similarity=0.052 Sum_probs=128.5
Q ss_pred EEECCCCCEEEEEeCCC--eEEEEecCCCeEEEEE----ecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393 33 VKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTI----SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT 106 (247)
Q Consensus 33 ~~~s~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 106 (247)
++|+++++.|+.+..++ .|.+++...+.....+ ......+.+++++|++..|+.+..++.|..||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 88999999888887765 7888887655443333 21345578899999555565677788999999987653222
Q ss_pred ----EecCCccE--EEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCC---------------CCCeEEEEECCC
Q psy4393 107 ----LKGHSNYV--FCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAH---------------SDPVSAVHFNRD 164 (247)
Q Consensus 107 ----~~~~~~~v--~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---------------~~~i~~~~~~~~ 164 (247)
..+....- ..++++|+ +.++++...++.|+.|+.... +..+..+ -.....++++|+
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 11111111 27899995 666666667788999987643 2222111 134678999999
Q ss_pred CCEEEEec-CCCeEEEEeCCCceeeeeeccC-------------CCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393 165 GSLIVSSS-YDGLCRIWDTASGQCLKTLIDD-------------DNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225 (247)
Q Consensus 165 ~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 225 (247)
|.++++-. .++.|+.||+.+++.....-.. .-.....++++++|.++++-..+++|+.+++
T Consensus 334 G~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 334 GNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 99777777 7889999997777643221110 0123578999999877777777889988764
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=8.8e-10 Score=86.80 Aligned_cols=184 Identities=11% Similarity=0.058 Sum_probs=122.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc----cCCeEEEEECCCCCEEEEEcC------CCeEEEE
Q psy4393 27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVSGSD------DKTLKIW 96 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~------d~~i~v~ 96 (247)
...+.+++|+++|+++++. . +.|.+||..+++........ ...+.++.++|+|+++++... .+.|..+
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~ 166 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 166 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence 4578999999999877754 3 45899998777654332211 134789999999997765542 2456666
Q ss_pred ECCCceEEEEEecCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECC--CC-e-----EEEeecCCCCCeEEEEECCCCCE
Q psy4393 97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVR--TG-K-----CLKTLPAHSDPVSAVHFNRDGSL 167 (247)
Q Consensus 97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~--~~-~-----~~~~~~~~~~~i~~~~~~~~~~~ 167 (247)
+ +++.. .+.........++|+|+++.++.+ ..++.|.+||+. ++ . ....+.........++++++|.+
T Consensus 167 ~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 167 A--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI 243 (326)
T ss_dssp E--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred e--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence 6 45433 232222345688999999876554 456789999985 55 2 12223323345678999999987
Q ss_pred EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEEC-CCCCEEEEEEcC
Q psy4393 168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLD 217 (247)
Q Consensus 168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d 217 (247)
+++...++.|..||. +++....+... ...+.+++|+ ++++.|+.++..
T Consensus 244 wva~~~~~~v~~~d~-~g~~~~~i~~~-~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 244 WNARWGEGAVDRYDT-DGNHIARYEVP-GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEETTTEEEEECT-TCCEEEEEECS-CSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEEEeCCCEEEEECC-CCCEEEEEECC-CCCcEEEEEecCCCCEEEEEecC
Confidence 777666788999998 45555444322 3458899998 898877666543
No 219
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.40 E-value=1.1e-09 Score=83.08 Aligned_cols=205 Identities=11% Similarity=0.040 Sum_probs=139.9
Q ss_pred ceEEEEEecCCC--CeEEEEECCCCCEEEEEeC--CCeEEEEecCCCeEEEEEecccC-CeEEEEECCCCCEE-EEEcCC
Q psy4393 17 YVLKFTLAGHTK--AVSSVKFSPNGEWLASSSA--DKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSRLL-VSGSDD 90 (247)
Q Consensus 17 ~~~~~~~~~h~~--~v~~~~~s~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~~~~~d 90 (247)
+....++ .|.. ....+.|++++.+.++.+. ++.|.++|..+++....+.-... -...+++. ++.+ ++.-.+
T Consensus 9 ~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 3344444 3443 3689999998755444443 57999999999998887653222 12344554 4444 555568
Q ss_pred CeEEEEECCCceEEEEEecC-CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCC-----CeEEEEECCC
Q psy4393 91 KTLKIWELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD-----PVSAVHFNRD 164 (247)
Q Consensus 91 ~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~i~~~~~~~~ 164 (247)
+.+.++|..+.+.+..+... ... ..+++++..++.+..++.|.++|..+.+.+..+..... ....+.+. +
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d 161 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N 161 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence 89999999999888887643 222 23555677666666788999999999888777664321 35677777 6
Q ss_pred CCEEEEecCCCeEEEEeCCCceeeeeeccC------------CCCCeEEEEECCCCCEEEEE-EcCCeEEEEECCCc
Q psy4393 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAA-TLDNTLKLWDSKVV 228 (247)
Q Consensus 165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~ 228 (247)
+..++....++.|.+.|..+++.+..+... .....+.++|+|+++.++.+ ...+++.+.+....
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 766666656789999999999887766321 11245789999998766554 46788888876554
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.38 E-value=9.6e-11 Score=92.99 Aligned_cols=199 Identities=12% Similarity=0.113 Sum_probs=131.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEecCCCeEEEEEecc------cCCeEEEEECCCCCEE-EEEc---C
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSA-----DKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSDSRLL-VSGS---D 89 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~ 89 (247)
+|...+.+++++++|+++++-.. ++.|.+||..+++....+... ...+..+++++++..+ ++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 35678999999999886665433 578999999888866665432 1246889999865554 5544 5
Q ss_pred CCeEEEEECCCceEEEEEecCC-----------------------------ccEEEEEEcCCCCEEEEeeCCC-CEEEEE
Q psy4393 90 DKTLKIWELSSGKCLKTLKGHS-----------------------------NYVFCCNFNPQSNLIVSGSFDE-SVRIWD 139 (247)
Q Consensus 90 d~~i~v~d~~~~~~~~~~~~~~-----------------------------~~v~~~~~~~~~~~l~~~~~d~-~i~v~d 139 (247)
++.|.+||..+++..+.+..+. ..+..++++|+++.++.+...+ .+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 7899999998776655442210 1257799999999888876655 455554
Q ss_pred CC---CCeE--------EEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCC
Q psy4393 140 VR---TGKC--------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 208 (247)
Q Consensus 140 ~~---~~~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 208 (247)
.. .+.. +... .+......++++++|.++++...++.|.+||..+++...............++|++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred HHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence 31 1100 0111 1122345689999999999888899999999855553322221223346789999999
Q ss_pred CEEEEEEcCCeEEEEE
Q psy4393 209 KYILAATLDNTLKLWD 224 (247)
Q Consensus 209 ~~l~~~~~dg~i~vwd 224 (247)
+++++.+..+++-+|.
T Consensus 303 ~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 303 YLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CEEEEECCGGGSGGGB
T ss_pred cEEEEeCccccccccc
Confidence 8888877655555554
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.36 E-value=2.4e-10 Score=90.71 Aligned_cols=202 Identities=9% Similarity=0.073 Sum_probs=130.4
Q ss_pred CCeEEEEECCCCCEEEEEe--CCCeEEEEecCCCeEEEEE-------ecccCCeEEEEECCCCCEEEEEcC-----CCeE
Q psy4393 28 KAVSSVKFSPNGEWLASSS--ADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWSSDSRLLVSGSD-----DKTL 93 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i 93 (247)
..+..++++++|+.+++.. .++.+++|.+.+++.. .+ ..+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999888753 2342455554444322 11 123456899999999876665443 5789
Q ss_pred EEEECCCceEEEEEecC------CccEEEEEEcCCCCEE-EEee---CCCCEEEEECCCCeEEEeecCCC----------
Q psy4393 94 KIWELSSGKCLKTLKGH------SNYVFCCNFNPQSNLI-VSGS---FDESVRIWDVRTGKCLKTLPAHS---------- 153 (247)
Q Consensus 94 ~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~d~~i~v~d~~~~~~~~~~~~~~---------- 153 (247)
.+||+.+++.++.+... ......+.+++++..+ ++.. .++.|.+||+.+++....+..|.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999988866665432 1245778898765444 4444 57889999998877655443210
Q ss_pred -------------------CCeEEEEECCCCCEEEEecCCC-eEEEEeCC---Cce-----eeeeec-cCCCCCeEEEEE
Q psy4393 154 -------------------DPVSAVHFNRDGSLIVSSSYDG-LCRIWDTA---SGQ-----CLKTLI-DDDNPPVSFVKF 204 (247)
Q Consensus 154 -------------------~~i~~~~~~~~~~~l~~~~~dg-~i~v~d~~---~~~-----~~~~~~-~~~~~~v~~~~~ 204 (247)
..+..++++|+++.|+++...+ .+..++.. .+. ....+. ..+......+++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 1357899999999888877665 55555432 110 000000 011122345889
Q ss_pred CCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393 205 SPNGKYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 205 s~~~~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
+++|.++++...++.|.+||..+++.
T Consensus 256 d~~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred CCCCCEEEEccCCCeEEEEECCCCCE
Confidence 99999888888899999999844443
No 222
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.36 E-value=2e-10 Score=91.77 Aligned_cols=191 Identities=11% Similarity=0.122 Sum_probs=132.6
Q ss_pred EEECCCCCEEEEEeC-----CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCCeEEEEE
Q psy4393 33 VKFSPNGEWLASSSA-----DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWE 97 (247)
Q Consensus 33 ~~~s~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d 97 (247)
....|+++.++.... ++.|.+.|..+.+....+.....+ . ++++|||++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 456789998887765 679999999999988888765555 4 99999999887765 357899999
Q ss_pred CCCceEEEEEecCC-------ccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393 98 LSSGKCLKTLKGHS-------NYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI 168 (247)
Q Consensus 98 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 168 (247)
..+.+.+..+.... ..-..+.++|+|++++.+.. ++.|.++|+.+++.+..+.... . ...+....+.+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCcee
Confidence 99998877764321 12345789999999888764 6789999999999888886532 1 12232234456
Q ss_pred EEecCCCeEEEEeCCC-ceeeee---eccCCCCCe-EEEEE-CCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 169 VSSSYDGLCRIWDTAS-GQCLKT---LIDDDNPPV-SFVKF-SPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 169 ~~~~~dg~i~v~d~~~-~~~~~~---~~~~~~~~v-~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
++.+.||.+.+.++.+ ++.... .+.....++ ....| .++|++++ .+.+|+|.+.|.....
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence 6777788888888865 443221 111111222 12355 46776554 6668999999986554
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.35 E-value=2.3e-09 Score=85.95 Aligned_cols=187 Identities=10% Similarity=0.038 Sum_probs=128.0
Q ss_pred EECCCCCEEEEEeC--CC---eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCCeEEEEEC
Q psy4393 34 KFSPNGEWLASSSA--DK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWEL 98 (247)
Q Consensus 34 ~~s~~~~~l~~~~~--dg---~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d~ 98 (247)
...|++++++.+.. .+ .|.++|..+++....+.....+ .++++|||++++++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34578887777653 22 7899999988887777654433 899999999998875 3678999999
Q ss_pred CCceEEEEEecC-------CccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEe-ecCCCCCeEEEEECCCC-CE
Q psy4393 99 SSGKCLKTLKGH-------SNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDG-SL 167 (247)
Q Consensus 99 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~ 167 (247)
.+.+.+..+... ...-..+.++|+|++++.+.. ++.|.++| .+++.+.. +.... . +.+.|++ ..
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~---~~~~~~~~~~ 179 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-C---YHIHPGAPST 179 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-e---EEEEeCCCce
Confidence 988776665432 122346889999999998874 47899999 99988777 65432 2 3444554 35
Q ss_pred EEEecCCCeEEEEeCCCceeeeeec-----cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393 168 IVSSSYDGLCRIWDTASGQCLKTLI-----DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 168 l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
+++.+.||.+.++|. +++...... ...........+.+++..++..+.++.+.+.|....
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 566678999999999 776552211 111111223456677666655557889999988543
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.29 E-value=4.3e-10 Score=91.23 Aligned_cols=186 Identities=12% Similarity=0.135 Sum_probs=130.0
Q ss_pred CCCCEEEEEeCC-----CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCCeEEEEECCCc
Q psy4393 37 PNGEWLASSSAD-----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWELSSG 101 (247)
Q Consensus 37 ~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d~~~~ 101 (247)
+++++++.+... +.|.++|..+.+....+.....+ .+.++||+++++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 467777665543 69999999999998888765555 899999999887775 3678999999999
Q ss_pred eEEEEEecC-------CccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC-CEEEEe
Q psy4393 102 KCLKTLKGH-------SNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSS 171 (247)
Q Consensus 102 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~ 171 (247)
+.+..+... ......+.++|++++++.+.. ++.|.++|+.+.+.+..+..... ....|++ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence 887776532 112335689999999998864 57899999999998888775321 2233333 445555
Q ss_pred cCCCeEEEEeCCCceeeee---eccCCCCC-eEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393 172 SYDGLCRIWDTASGQCLKT---LIDDDNPP-VSFVKFSPNGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 172 ~~dg~i~v~d~~~~~~~~~---~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
+.||.+.+.+..+++.... .+.....+ ...+.+++++..++..+..++|.+.|....
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 6677777777755543321 11111111 123567999998888888899999997543
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.28 E-value=4.7e-09 Score=78.89 Aligned_cols=193 Identities=10% Similarity=0.114 Sum_probs=130.6
Q ss_pred ceEEEEEecCC--CCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCC
Q psy4393 17 YVLKFTLAGHT--KAVSSVKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDK 91 (247)
Q Consensus 17 ~~~~~~~~~h~--~~v~~~~~s~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~ 91 (247)
+....++ .|. .-...+.|+ ++.++.+.+.+| .|+++|..+++....+.-.. ........++++.|. ..-.++
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence 3344444 343 335789998 676666666665 89999999999888775432 232222333445554 444688
Q ss_pred eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-----CCeEEEEECCCCC
Q psy4393 92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-----DPVSAVHFNRDGS 166 (247)
Q Consensus 92 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~ 166 (247)
.+.+||.++.+.+.++...... +. +++++..++....++.|+++|..+.+.+..+.... ..++.+.+. +|+
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG-~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG-WG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC-CC--EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECccCcEEEEEECCCCc-eE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 9999999999988888754322 22 33556666666667889999999988877766532 234456775 677
Q ss_pred EEEEecCCCeEEEEeCCCceeeeeeccC-----------CCCCeEEEEECCCCCEEEEEEc
Q psy4393 167 LIVSSSYDGLCRIWDTASGQCLKTLIDD-----------DNPPVSFVKFSPNGKYILAATL 216 (247)
Q Consensus 167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~ 216 (247)
.++..-.+..|.+.|..+++.+..+... .....+.|+++|+++.|+..+.
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 6666667889999999999887665321 1234588999999887777763
No 226
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.26 E-value=3.3e-09 Score=85.70 Aligned_cols=189 Identities=14% Similarity=0.178 Sum_probs=128.2
Q ss_pred CCCCEEEE-EeCCCeEEEEecCCC----eEEEEEec-------ccCCeEEEEECCCCCEEEEEcCC------CeEEEEEC
Q psy4393 37 PNGEWLAS-SSADKLIKIWGAYDG----KFEKTISG-------HKLGISDVAWSSDSRLLVSGSDD------KTLKIWEL 98 (247)
Q Consensus 37 ~~~~~l~~-~~~dg~v~iw~~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~ 98 (247)
+++++|+. +..++.|.++|..+. +....+.. ....-..+...|+| .++++..+ +.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887765 557789999998543 44455521 11134567788999 76666555 78999999
Q ss_pred CCceEEEEEecCCc---cEEEEEEcCCCCEEEEee-------------------CCCCEEEEECCCCeEEEeecCCC--C
Q psy4393 99 SSGKCLKTLKGHSN---YVFCCNFNPQSNLIVSGS-------------------FDESVRIWDVRTGKCLKTLPAHS--D 154 (247)
Q Consensus 99 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~-------------------~d~~i~v~d~~~~~~~~~~~~~~--~ 154 (247)
++.+.+..+..... .-..+.|+|+++.+++.. .+..|.+||+.+++.+..+.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99988887753222 233467899999999885 36789999999988887776642 1
Q ss_pred CeEEEEE--CCCCCEEEEecC------CCeEEEEeCCCceee--eee--cc----C-----------CCCCeEEEEECCC
Q psy4393 155 PVSAVHF--NRDGSLIVSSSY------DGLCRIWDTASGQCL--KTL--ID----D-----------DNPPVSFVKFSPN 207 (247)
Q Consensus 155 ~i~~~~~--~~~~~~l~~~~~------dg~i~v~d~~~~~~~--~~~--~~----~-----------~~~~v~~~~~s~~ 207 (247)
....+.| +|+++++++++. ++.|.+|....++.. +.+ .. . .......+.+|||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 2344555 999998887764 557766554333211 110 00 0 0123567889999
Q ss_pred CCEEEEEEc-CCeEEEEECC
Q psy4393 208 GKYILAATL-DNTLKLWDSK 226 (247)
Q Consensus 208 ~~~l~~~~~-dg~i~vwd~~ 226 (247)
|++|+++.. .+.|.+||..
T Consensus 332 GrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp SCEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEeCCCCEEEEEEec
Confidence 999998875 6899999985
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=1.4e-09 Score=94.15 Aligned_cols=198 Identities=13% Similarity=0.074 Sum_probs=128.6
Q ss_pred EEEEECCCCCEEEEEeCCC-------------eEEEEecCCCeE--EEEEec---ccCCeEEEEECCCCCEEEEEcC---
Q psy4393 31 SSVKFSPNGEWLASSSADK-------------LIKIWGAYDGKF--EKTISG---HKLGISDVAWSSDSRLLVSGSD--- 89 (247)
Q Consensus 31 ~~~~~s~~~~~l~~~~~dg-------------~v~iw~~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~~~--- 89 (247)
..++|+ ||+.|+.+..+. .|++|++.++.. ...... +......+.|+|||++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 467899 999988877663 388898765432 222322 2334678999999998754432
Q ss_pred -CCeEEEEECCCce-EEEEEecCCccEEEEEEcCCCCEEEEee-CC---CCEEEEECCCCeE--EEeecCCCCCeEEEEE
Q psy4393 90 -DKTLKIWELSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGS-FD---ESVRIWDVRTGKC--LKTLPAHSDPVSAVHF 161 (247)
Q Consensus 90 -d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d---~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~ 161 (247)
...++++|+.++. ....+..+....... +++++..++..+ .+ +.|..+|+.++.. ...+..+...+. .|
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~ 333 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV 333 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence 3589999987763 334455444444443 566666555443 33 5689999987653 234445554444 78
Q ss_pred CCCCCEEEEecCC-C--eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC----CeEEEEECCCcceEEE
Q psy4393 162 NRDGSLIVSSSYD-G--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD----NTLKLWDSKVVTPAII 233 (247)
Q Consensus 162 ~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~ 233 (247)
++++..|+....+ + .|.+||+..+. ...+.......+..+.++++++.|+....+ +.+..||..+++....
T Consensus 334 s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 334 HSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp EEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred EEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 8888887766544 3 68899987554 333333334456677888898877766555 7999999877654433
No 228
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.23 E-value=6e-08 Score=72.26 Aligned_cols=195 Identities=10% Similarity=0.088 Sum_probs=130.6
Q ss_pred CCCceEEEEEecCC--CCeEEEEECCCCCEEEEEeCC--CeEEEEecCCCeEEEEEecccCC-eEEEEECCCCCEEEEEc
Q psy4393 14 KPNYVLKFTLAGHT--KAVSSVKFSPNGEWLASSSAD--KLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSRLLVSGS 88 (247)
Q Consensus 14 ~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~~~~~d--g~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~ 88 (247)
.-.+....++ .|. .-...+.|+. +.+..+.+.+ +.|+.+|..+++....+...... -..++.. .+......-
T Consensus 6 ~~~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw 82 (243)
T 3mbr_X 6 TQGYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTW 82 (243)
T ss_dssp BCCEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEES
T ss_pred ccceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEe
Confidence 3445555555 343 4577899986 5555565654 48999999999988877543221 1223333 233344555
Q ss_pred CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-----CCeEEEEECC
Q psy4393 89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-----DPVSAVHFNR 163 (247)
Q Consensus 89 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~i~~~~~~~ 163 (247)
.++.+.+||.++.+.+.++...... +.++ +++..++.+..++.|+++|..+.+.+..+.... ..++.+.+.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred eCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence 6889999999999988888754332 3343 455556655668889999999988877766532 234556655
Q ss_pred CCCEEEEecCCCeEEEEeCCCceeeeeeccC------------CCCCeEEEEECCCCCEEEEEE
Q psy4393 164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~ 215 (247)
+|+.++....+..|.+.|..+++.+..+... .....+.|+++|+++.|...+
T Consensus 159 ~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 159 NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6776666666889999999999887665311 123568899999887776666
No 229
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.22 E-value=5.5e-09 Score=78.55 Aligned_cols=180 Identities=9% Similarity=0.037 Sum_probs=125.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeE--EEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS--DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK 105 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 105 (247)
.....+.|+ ++.+..+.+.+|.|+++|..+++....+ - ..... .+++.. +......-.++.+.+||.++.+.+.
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence 335788887 3566667778889999999999877766 2 22332 355543 3444555678899999999999888
Q ss_pred EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCC-----CeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD-----PVSAVHFNRDGSLIVSSSYDGLCRIW 180 (247)
Q Consensus 106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~v~ 180 (247)
++...... +.++ +++..++.+..++.|+++|..+.+.+..+..... .++.+.|. +|+.++....+..|.+.
T Consensus 131 ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 131 TTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 88754322 2333 5567777776788999999999988777664321 34566666 77766666678899999
Q ss_pred eCCCceeeeeeccC------------CCCCeEEEEECCCCCEEEEEE
Q psy4393 181 DTASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 181 d~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~ 215 (247)
|..+++.+..+... .....+.||++|+++.|+..+
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999877665321 123568899999877666555
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=8.4e-09 Score=89.20 Aligned_cols=189 Identities=12% Similarity=0.125 Sum_probs=129.8
Q ss_pred CCeEEEEecCCCeEEEEEeccc-------------------------------CCeEEEEECCCCCEEEEEcCCCe----
Q psy4393 48 DKLIKIWGAYDGKFEKTISGHK-------------------------------LGISDVAWSSDSRLLVSGSDDKT---- 92 (247)
Q Consensus 48 dg~v~iw~~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~l~~~~~d~~---- 92 (247)
+|.|..||..+++....+.... ..-..++++|++.+++.+..++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 6899999999999887765210 00124678888888888887763
Q ss_pred ---------------EEEEECCCceEEEEEecC--C-------ccEEEEEEcCCCC---EEEEeeCCCCEEEEECCCCeE
Q psy4393 93 ---------------LKIWELSSGKCLKTLKGH--S-------NYVFCCNFNPQSN---LIVSGSFDESVRIWDVRTGKC 145 (247)
Q Consensus 93 ---------------i~v~d~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~ 145 (247)
|..+|.++++.+..++.. . ..........++. .++.++.+|.++++|.++|+.
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 999999999988776542 1 1111122223454 788899999999999999988
Q ss_pred EEeecCCCC---------------------------------------CeEEEEECCCCCEEEEecC-------------
Q psy4393 146 LKTLPAHSD---------------------------------------PVSAVHFNRDGSLIVSSSY------------- 173 (247)
Q Consensus 146 ~~~~~~~~~---------------------------------------~i~~~~~~~~~~~l~~~~~------------- 173 (247)
+........ ....++++|+..++++...
T Consensus 342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 421 (689)
T 1yiq_A 342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP 421 (689)
T ss_dssp EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence 743321110 0112678888777776521
Q ss_pred --------------------------------CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEE
Q psy4393 174 --------------------------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 221 (247)
Q Consensus 174 --------------------------------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 221 (247)
+|.+..||+.+++.+-...... ++..-.+...+.+++.++.||.++
T Consensus 422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~gt~dg~l~ 499 (689)
T 1yiq_A 422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT--IFNGGTLSTAGNLVFEGSADGRVI 499 (689)
T ss_dssp CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEE
T ss_pred cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC--CccCccceECCCEEEEECCCCcEE
Confidence 3779999999998664443221 222224556778999999999999
Q ss_pred EEECCCcceEEEEccCC
Q psy4393 222 LWDSKVVTPAIICSTPL 238 (247)
Q Consensus 222 vwd~~~~~~~~~~~~~~ 238 (247)
.||.++++.+-.+..+.
T Consensus 500 a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 500 AYAADTGEKLWEQPAAS 516 (689)
T ss_dssp EEETTTCCEEEEEECSS
T ss_pred EEECCCCccceeeeCCC
Confidence 99999999888877664
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.17 E-value=4.9e-09 Score=90.45 Aligned_cols=189 Identities=12% Similarity=0.149 Sum_probs=132.7
Q ss_pred CCeEEEEecCCCeEEEEEecccCC--------------------------------eEEEEECCCCCEEEEEcCCC----
Q psy4393 48 DKLIKIWGAYDGKFEKTISGHKLG--------------------------------ISDVAWSSDSRLLVSGSDDK---- 91 (247)
Q Consensus 48 dg~v~iw~~~~~~~~~~~~~~~~~--------------------------------v~~~~~~~~~~~l~~~~~d~---- 91 (247)
+|.|+.+|..+++....+...... ...++++|++..++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 689999999999988776532111 12467888888888877664
Q ss_pred ---------------eEEEEECCCceEEEEEecCC---------ccEEEEEEcCCC---CEEEEeeCCCCEEEEECCCCe
Q psy4393 92 ---------------TLKIWELSSGKCLKTLKGHS---------NYVFCCNFNPQS---NLIVSGSFDESVRIWDVRTGK 144 (247)
Q Consensus 92 ---------------~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~---~~l~~~~~d~~i~v~d~~~~~ 144 (247)
.|..+|.++++....++... ..........+| ..++.++.+|.++++|.++|+
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 48999999998877665321 111122333466 678899999999999999999
Q ss_pred EEEeecCCCC-----------Ce------------------------EEEEECCCCCEEEEecC----------------
Q psy4393 145 CLKTLPAHSD-----------PV------------------------SAVHFNRDGSLIVSSSY---------------- 173 (247)
Q Consensus 145 ~~~~~~~~~~-----------~i------------------------~~~~~~~~~~~l~~~~~---------------- 173 (247)
.+..+..... ++ ..++++|++.++++...
T Consensus 349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~ 428 (677)
T 1kb0_A 349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ 428 (677)
T ss_dssp EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence 8765542210 01 14678898888777532
Q ss_pred ---------------------------CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 174 ---------------------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 174 ---------------------------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
.|.|..||+.+++.+-..... .++....+..++..++.++.||.+++||.+
T Consensus 429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--SPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC--CCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 278999999999865444322 222233455677888999999999999999
Q ss_pred CcceEEEEccCC
Q psy4393 227 VVTPAIICSTPL 238 (247)
Q Consensus 227 ~~~~~~~~~~~~ 238 (247)
+++++-.+..+.
T Consensus 507 tG~~lw~~~~~~ 518 (677)
T 1kb0_A 507 TGEKLWEAPTGT 518 (677)
T ss_dssp TCCEEEEEECSS
T ss_pred CCceeeeeeCCC
Confidence 999888877665
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.15 E-value=2.4e-07 Score=70.57 Aligned_cols=192 Identities=6% Similarity=-0.036 Sum_probs=116.7
Q ss_pred CEEEEEeCCCeEEEEecCCCeE-----EEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCceEEEEEecCCcc
Q psy4393 40 EWLASSSADKLIKIWGAYDGKF-----EKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTLKGHSNY 113 (247)
Q Consensus 40 ~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 113 (247)
++|+.+.. +.|+.++...... ...+.........++|+++++.|+ +...++.|..++.........+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 44555443 4677777654322 112222223467899999765554 5556789999998765433333333345
Q ss_pred EEEEEEcCCCCEEE-EeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC---CCeEEEEeCCCceeee
Q psy4393 114 VFCCNFNPQSNLIV-SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY---DGLCRIWDTASGQCLK 189 (247)
Q Consensus 114 v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~ 189 (247)
...+++++++..++ +....+.|.++++..................++++|++..|+.+.. .+.|..+++.... ..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence 67889998755554 4455678999998643322222222245688999997665555543 3688888876432 22
Q ss_pred eeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEE
Q psy4393 190 TLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAII 233 (247)
Q Consensus 190 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~ 233 (247)
.+.......-..++++|++..|+.+. ..++|.++|.........
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 22222223457899999888777666 457999999876544333
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.13 E-value=7.5e-07 Score=67.80 Aligned_cols=202 Identities=9% Similarity=0.006 Sum_probs=126.7
Q ss_pred CeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEEE
Q psy4393 29 AVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKT 106 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~ 106 (247)
.+..++|++++..|+.+ ..++.|..++.........+.........+++++++..+ ++....+.|.+++.........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 46789999976665544 456889999986554433333333467889999976555 4555678999999865432222
Q ss_pred EecCCccEEEEEEcCCCCEEEEeeC---CCCEEEEECCCCeEEEee-cCCCCCeEEEEECCCCCEEEE-ecCCCeEEEEe
Q psy4393 107 LKGHSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWD 181 (247)
Q Consensus 107 ~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~v~d 181 (247)
..........++++|++..++.+.. .+.|..+++.... ...+ .........+++++++..|+. -...+.|.++|
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 2222245678899996665555443 3678888875432 2222 222345688999998766654 44567999999
Q ss_pred CCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEc
Q psy4393 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 235 (247)
........ +......+ ..++.. +..|+.+. ..+.|.++|..+++.+..+.
T Consensus 196 ~~g~~~~~-~~~~~~~P-~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 196 PAQPGRRK-VLEGLQYP-FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TTEEEEEE-EEECCCSE-EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred cCCCceEE-EecCCCCc-eEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 87644322 22222222 455554 45666655 46899999998877666654
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.11 E-value=1e-07 Score=77.02 Aligned_cols=185 Identities=16% Similarity=0.227 Sum_probs=123.1
Q ss_pred eEEEEECCCCCEEEEEeCC------CeEEEEecCCCeEEEEEecccCC---eEEEEECCCCCEEEEEc------------
Q psy4393 30 VSSVKFSPNGEWLASSSAD------KLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSRLLVSGS------------ 88 (247)
Q Consensus 30 v~~~~~s~~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~------------ 88 (247)
-..+..+|+| .++++..+ |.+.++|..+.+....+.....+ -.++.|+|+++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~ 218 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK 218 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence 3456778999 65554433 78999999988888777532221 23577899999888874
Q ss_pred -------CCCeEEEEECCCceEEEEEecCC--ccEEEEEE--cCCCCEEEEeeC------CCCEEEEECCCCeE--EEe-
Q psy4393 89 -------DDKTLKIWELSSGKCLKTLKGHS--NYVFCCNF--NPQSNLIVSGSF------DESVRIWDVRTGKC--LKT- 148 (247)
Q Consensus 89 -------~d~~i~v~d~~~~~~~~~~~~~~--~~v~~~~~--~~~~~~l~~~~~------d~~i~v~d~~~~~~--~~~- 148 (247)
....|.+||+.+++.+..+.... .....+.| +|++++++.+++ ++.|.+|....++. .+.
T Consensus 219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI 298 (462)
T 2ece_A 219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI 298 (462)
T ss_dssp TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence 36799999999888777776531 23344555 999998888774 45776665443321 111
Q ss_pred -ecCC----------------CCCeEEEEECCCCCEEEEecC-CCeEEEEeCCC---ceeeeeeccCCC---------C-
Q psy4393 149 -LPAH----------------SDPVSAVHFNRDGSLIVSSSY-DGLCRIWDTAS---GQCLKTLIDDDN---------P- 197 (247)
Q Consensus 149 -~~~~----------------~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~---~~~~~~~~~~~~---------~- 197 (247)
+... ......+.+++||++|+++.. .+.|.+||+.. .+.+..+..... .
T Consensus 299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~ 378 (462)
T 2ece_A 299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK 378 (462)
T ss_dssp EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence 1110 134577899999999887765 57999999853 233433332210 1
Q ss_pred ---CeEEEEECCCCCEEEEEE
Q psy4393 198 ---PVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 198 ---~v~~~~~s~~~~~l~~~~ 215 (247)
.-..++++|||++|+++.
T Consensus 379 ~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 379 LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCCEEEEcCCCCEEEEEc
Confidence 125688999999999988
No 235
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.08 E-value=4e-07 Score=71.32 Aligned_cols=211 Identities=10% Similarity=0.081 Sum_probs=130.7
Q ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec-------------------ccCCeEEEEECC-C
Q psy4393 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-------------------HKLGISDVAWSS-D 80 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-------------------~~~~v~~~~~~~-~ 80 (247)
+.+.+.-....+++|+++|++++++..++.|..|+..++........ .......+++.+ +
T Consensus 12 i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 12 ILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp EEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred eecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 44544444567889999999788888889999998766544322110 112467899997 5
Q ss_pred CCEEEEEcCCCeEEEEECCCceEEEEEec-----CCccEEEEEEcC-CCCEEEEeeC-----------------CCCEEE
Q psy4393 81 SRLLVSGSDDKTLKIWELSSGKCLKTLKG-----HSNYVFCCNFNP-QSNLIVSGSF-----------------DESVRI 137 (247)
Q Consensus 81 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~v 137 (247)
++ |+.+...+.+..+|..++.. ..+.. .......+.+.+ +|++.++... ++.|..
T Consensus 92 g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 92 NQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred Cc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 55 44444445578888765532 22211 112357788999 8987776432 366888
Q ss_pred EECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeCCCce--eeeeeccCCCCCeEEEEECCCCCEEEEE
Q psy4393 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAA 214 (247)
Q Consensus 138 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 214 (247)
+|..+++....... ......++++|+++.|+++ ...+.|.+|++.... ....+... .. ...++++++|.+.++.
T Consensus 170 ~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 170 YDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp EETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEEE
T ss_pred EeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEEe
Confidence 89876654222111 1223568999999866555 556889999987421 11111111 12 5678999999866665
Q ss_pred Ec----------CCeEEEEECCCcceEEEEccC
Q psy4393 215 TL----------DNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 215 ~~----------dg~i~vwd~~~~~~~~~~~~~ 237 (247)
.. .+.|..+|.+ ++.+..+..+
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~ 278 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP 278 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTT-SCEEEEEECC
T ss_pred cCcccccccCCCccEEEEECCC-CCEEEEEECC
Confidence 44 4678888875 4555555544
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.08 E-value=2.1e-08 Score=86.51 Aligned_cols=195 Identities=12% Similarity=0.147 Sum_probs=132.0
Q ss_pred EEEEECCCCCEEEEEeCCC-------------------eEEEEecCCCeEEEEEecccC---------CeEEEEECCCC-
Q psy4393 31 SSVKFSPNGEWLASSSADK-------------------LIKIWGAYDGKFEKTISGHKL---------GISDVAWSSDS- 81 (247)
Q Consensus 31 ~~~~~s~~~~~l~~~~~dg-------------------~v~iw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~- 81 (247)
..++++|++..++.+..++ .|..+|..+++....+..... ...-+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 3578889888888776553 489999999998877653211 11112223366
Q ss_pred --CEEEEEcCCCeEEEEECCCceEEEEEecCC-----------ccE------------------------EEEEEcCCCC
Q psy4393 82 --RLLVSGSDDKTLKIWELSSGKCLKTLKGHS-----------NYV------------------------FCCNFNPQSN 124 (247)
Q Consensus 82 --~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----------~~v------------------------~~~~~~~~~~ 124 (247)
..++.++.+|.++++|..+++.+..+.... ..+ ..++++|+..
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 578899999999999999998876554221 001 1357788888
Q ss_pred EEEEeeC-------------------------------------------CCCEEEEECCCCeEEEeecCCCCCeEEEEE
Q psy4393 125 LIVSGSF-------------------------------------------DESVRIWDVRTGKCLKTLPAHSDPVSAVHF 161 (247)
Q Consensus 125 ~l~~~~~-------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 161 (247)
++++... .+.|..||+.+++.+...... .+.....+
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~ 484 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTL 484 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEE
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcce
Confidence 8877543 167999999999987776533 23333345
Q ss_pred CCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEE-Ec----------------CCeEEEEE
Q psy4393 162 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL----------------DNTLKLWD 224 (247)
Q Consensus 162 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~----------------dg~i~vwd 224 (247)
...+.+++.++.+|.+++||.++++.+..+.........-+.+.++|+.++.. +. .+.+.+|.
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~ 564 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFV 564 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEe
Confidence 55677888899999999999999998877754432222234566788755443 22 36777777
Q ss_pred CC
Q psy4393 225 SK 226 (247)
Q Consensus 225 ~~ 226 (247)
+.
T Consensus 565 l~ 566 (677)
T 1kb0_A 565 VG 566 (677)
T ss_dssp ET
T ss_pred cc
Confidence 65
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.06 E-value=5.5e-08 Score=81.22 Aligned_cols=186 Identities=11% Similarity=0.116 Sum_probs=128.8
Q ss_pred CCCCEEEEEeC-CCeEEEEecCCCeEEEEEecc-cCCeEEEEE-C-CCCCEEEEEcC------------------CCeEE
Q psy4393 37 PNGEWLASSSA-DKLIKIWGAYDGKFEKTISGH-KLGISDVAW-S-SDSRLLVSGSD------------------DKTLK 94 (247)
Q Consensus 37 ~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~~------------------d~~i~ 94 (247)
+||++++.+.. ++.|.+.|..+.+....+.-. ......+++ + |+++++++++. ++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888877554 567999999998887755432 234778887 5 99999988842 35789
Q ss_pred EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCC--------------------------------------CEE
Q psy4393 95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--------------------------------------SVR 136 (247)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------------------------------~i~ 136 (247)
+.|..+.+...++.... .-..++.+|+|+++++.+.+. .+.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999988777765322 234567899999888877443 366
Q ss_pred EEECCC--CeE-EEeecCCCCCeEEEEECCCCCEEEEec-CCCeEEEEeCCCce------------eeeeeccCCCCCeE
Q psy4393 137 IWDVRT--GKC-LKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQ------------CLKTLIDDDNPPVS 200 (247)
Q Consensus 137 v~d~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~------------~~~~~~~~~~~~v~ 200 (247)
+.|.++ ++. +..+... ....++.++|||+++++++ .+..+.++|+.+.+ ..... .-...-.
T Consensus 258 VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~gP~ 334 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGLGPL 334 (595)
T ss_dssp EEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCSCEE
T ss_pred EEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCCCCcc
Confidence 777766 433 3334322 2335689999999877655 56799999998653 12222 2223456
Q ss_pred EEEECCCCCEEEE-EEcCCeEEEEECCC
Q psy4393 201 FVKFSPNGKYILA-ATLDNTLKLWDSKV 227 (247)
Q Consensus 201 ~~~~s~~~~~l~~-~~~dg~i~vwd~~~ 227 (247)
.++|+|+| ++++ .-.|+.|.+||...
T Consensus 335 h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 335 HTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred eEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 78999999 5554 45799999999876
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=2.1e-11 Score=97.84 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCC-CeE-
Q psy4393 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD-PVS- 157 (247)
Q Consensus 80 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~i~- 157 (247)
++..+++++.|+.++.||..+++.+..+.. ..+.+..+..++..+++++.|+.++.||..+++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999998877765 3343444456677788888999999999998877655543211 000
Q ss_pred EEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393 158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA 231 (247)
Q Consensus 158 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 231 (247)
+..+. ++..+++++.++.+..||..+++.+-.+.... ...++|++..+++++.|+.|+.||.++++.+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 00111 34467788889999999999988764443221 1345678889999999999999999887643
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=5.3e-08 Score=76.21 Aligned_cols=192 Identities=12% Similarity=0.036 Sum_probs=124.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393 26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK 105 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 105 (247)
+...+.++...+++. +..++.++.+..++.. ++...........+.++...+++...+.. +.+..+| .+++...
T Consensus 135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~ 208 (330)
T 3hxj_A 135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKW 208 (330)
T ss_dssp SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEE
T ss_pred CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEE
Confidence 344456667777776 4556778899999987 77666665545556677777777755444 7788899 6666665
Q ss_pred EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCc
Q psy4393 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 185 (247)
Q Consensus 106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 185 (247)
........+.++...+++.+. .++.++.+..+|. ++..+..+......+..+...+++. |.+++.+|.+..+|. ++
T Consensus 209 ~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g 284 (330)
T 3hxj_A 209 NFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DG 284 (330)
T ss_dssp EECCSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TS
T ss_pred EEccCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CC
Confidence 555444556677778777654 4566778888874 4555555554443344455666665 556777888999996 55
Q ss_pred eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 186 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
+....+... ...+..+..+++|+ |..++.+|.+++...+...
T Consensus 285 ~~~~~~~~~-~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 285 TEKWNFETG-SWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CEEEEEECS-SCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred cEEEEEEcC-CccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 544443322 23445566777775 6678889999998765543
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.02 E-value=4.6e-08 Score=84.63 Aligned_cols=181 Identities=14% Similarity=0.180 Sum_probs=120.8
Q ss_pred EEEECCCCCEEEEEeCCCe-------------------EEEEecCCCeEEEEEeccc---------CCeEEEEECCCCC-
Q psy4393 32 SVKFSPNGEWLASSSADKL-------------------IKIWGAYDGKFEKTISGHK---------LGISDVAWSSDSR- 82 (247)
Q Consensus 32 ~~~~s~~~~~l~~~~~dg~-------------------v~iw~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~- 82 (247)
.++++|++.+++.+..++. |.-+|..+++....+.... .+..-.....+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5788888888888877653 9999999999888776421 1111112222454
Q ss_pred --EEEEEcCCCeEEEEECCCceEEEEEecCC----------------------------cc-----------EEEEEEcC
Q psy4393 83 --LLVSGSDDKTLKIWELSSGKCLKTLKGHS----------------------------NY-----------VFCCNFNP 121 (247)
Q Consensus 83 --~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----------------------------~~-----------v~~~~~~~ 121 (247)
.++.++.+|.++++|.++++.+....... .. ...++++|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 68889999999999999998764332110 00 01257788
Q ss_pred CCCEEEEeeC---------------------------------------------CCCEEEEECCCCeEEEeecCCCCCe
Q psy4393 122 QSNLIVSGSF---------------------------------------------DESVRIWDVRTGKCLKTLPAHSDPV 156 (247)
Q Consensus 122 ~~~~l~~~~~---------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~i 156 (247)
+..++++... +|.|+.||+.+++.+...+.+. +.
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~ 477 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IF 477 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-Cc
Confidence 8777776522 3679999999999887766543 22
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEE
Q psy4393 157 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 213 (247)
Q Consensus 157 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 213 (247)
..-.+...+.+++.++.||.++.||.++++.+-.+.........-+.|..+|+..++
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 222444567788889999999999999999886664443221122456778875444
No 241
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.00 E-value=2.7e-06 Score=64.14 Aligned_cols=210 Identities=17% Similarity=0.178 Sum_probs=135.5
Q ss_pred CCCCceEEEE---EecCCCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEec-ccCCeEEEEECCCCCEEEEE
Q psy4393 13 PKPNYVLKFT---LAGHTKAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLLVSG 87 (247)
Q Consensus 13 ~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 87 (247)
+.|.|.+... +.+-...+..++|+|++..|+ +...++.|...|.. ++....+.- .......+++.+++.++++.
T Consensus 9 ~l~~y~~~~~~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~ 87 (255)
T 3qqz_A 9 SFQNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISD 87 (255)
T ss_dssp CCTTCEEEEEEEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEE
T ss_pred CccceEEEEeceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEE
Confidence 4555666554 445667899999999877555 46778888888887 666666532 22457788999888776776
Q ss_pred cCCCeEEEEECCCceE---EEEEe------cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC---CeEEEee------
Q psy4393 88 SDDKTLKIWELSSGKC---LKTLK------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT---GKCLKTL------ 149 (247)
Q Consensus 88 ~~d~~i~v~d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~------ 149 (247)
-.++.+.++++..... +.... ........++|+|.++.++++.+.....+|.... ...+...
T Consensus 88 E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~ 167 (255)
T 3qqz_A 88 ERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQ 167 (255)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHH
T ss_pred CCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhc
Confidence 6778898988765432 22221 1122357899999988777777665555555531 1111111
Q ss_pred -cCCCCCeEEEEECCCCC-EEEEecCCCeEEEEeCCCceeeeeeccCC--------CCCeEEEEECCCCCEEEEEEcCCe
Q psy4393 150 -PAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKFSPNGKYILAATLDNT 219 (247)
Q Consensus 150 -~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~dg~ 219 (247)
..+......++++|... +++.......+..+|... +.+..+.... ...-..++|+++|+ |+..++-+.
T Consensus 168 ~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~ 245 (255)
T 3qqz_A 168 RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNR 245 (255)
T ss_dssp HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTE
T ss_pred cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCce
Confidence 11223467899998654 555666677888898764 4444332221 23557899999997 555577788
Q ss_pred EEEEEC
Q psy4393 220 LKLWDS 225 (247)
Q Consensus 220 i~vwd~ 225 (247)
+.+|..
T Consensus 246 ~y~f~~ 251 (255)
T 3qqz_A 246 FYRFTP 251 (255)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 888764
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.95 E-value=1.5e-07 Score=78.65 Aligned_cols=198 Identities=11% Similarity=0.117 Sum_probs=130.4
Q ss_pred CCeEEEEE-C-CCCCEEEEEe------------------CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEE
Q psy4393 28 KAVSSVKF-S-PNGEWLASSS------------------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG 87 (247)
Q Consensus 28 ~~v~~~~~-s-~~~~~l~~~~------------------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 87 (247)
.....+++ + |+++++++++ .++.+.+.|..+.+....+.-.. ....++.+|+|++++++
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt 212 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST 212 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence 45678887 5 8999998874 24578899998888777766433 34567899999998887
Q ss_pred cCCC--------------------------------------eEEEEECCC--ceE-EEEEecCCccEEEEEEcCCCCEE
Q psy4393 88 SDDK--------------------------------------TLKIWELSS--GKC-LKTLKGHSNYVFCCNFNPQSNLI 126 (247)
Q Consensus 88 ~~d~--------------------------------------~i~v~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l 126 (247)
+.+. .|.+.|..+ ++. +..+... ....++.++|||+++
T Consensus 213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v 291 (595)
T 1fwx_A 213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHL 291 (595)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEE
T ss_pred ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEE
Confidence 7543 255666665 333 3333322 124568899999977
Q ss_pred EEe-eCCCCEEEEECCCCe------------EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC---------
Q psy4393 127 VSG-SFDESVRIWDVRTGK------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------- 184 (247)
Q Consensus 127 ~~~-~~d~~i~v~d~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~--------- 184 (247)
+.. ..+..+.++|+.+.+ ......... ....++|+|+|....+.-.+++|.+||+..
T Consensus 292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~-gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~ 370 (595)
T 1fwx_A 292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL-GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEK 370 (595)
T ss_dssp EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS-CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred EEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC-CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence 665 467789999998542 233444433 457789999994445566799999999876
Q ss_pred -ceeeeeeccCCCCCe-E----EEEECCCCCEEEEEEc--CCeE-----------EEEECCCcc
Q psy4393 185 -GQCLKTLIDDDNPPV-S----FVKFSPNGKYILAATL--DNTL-----------KLWDSKVVT 229 (247)
Q Consensus 185 -~~~~~~~~~~~~~~v-~----~~~~s~~~~~l~~~~~--dg~i-----------~vwd~~~~~ 229 (247)
.+.+.++..+.. +- . .+.++|||++|++... ..++ -++|+...+
T Consensus 371 ~~~vi~kidV~yq-pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 371 VDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cceeEEEeecccc-cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 333333322211 11 1 1245899999998763 2344 788886544
No 243
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.95 E-value=2.4e-07 Score=74.08 Aligned_cols=191 Identities=14% Similarity=0.051 Sum_probs=117.0
Q ss_pred CCCEEEEEeCCCeEEEEecCCCeEEEEEeccc---------CCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe
Q psy4393 38 NGEWLASSSADKLIKIWGAYDGKFEKTISGHK---------LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK 108 (247)
Q Consensus 38 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 108 (247)
.+..+++++.++.|..+|..+++......... ..+.. ....++..+++++.++.+..+|.++++......
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 45677778888999999999998877665421 12221 112245678888889999999999998776655
Q ss_pred cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCe-----EEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393 109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTA 183 (247)
Q Consensus 109 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~v~d~~ 183 (247)
............ +..++.++.++.+..+|.++++.+.......... ...... +..+++++.++.+..+|..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME 206 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence 432211111122 3577778889999999999998877665432111 111222 3467778889999999999
Q ss_pred CceeeeeeccCCCCC---eE---EEEECC--CCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393 184 SGQCLKTLIDDDNPP---VS---FVKFSP--NGKYILAATLDNTLKLWDSKVVTPAII 233 (247)
Q Consensus 184 ~~~~~~~~~~~~~~~---v~---~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~ 233 (247)
+++.+-......... +. .+...| .+..++.++.++.+..+|.++++.+-.
T Consensus 207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~ 264 (376)
T 3q7m_A 207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK 264 (376)
T ss_dssp TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee
Confidence 887654432211000 00 000011 235666667777788887776655433
No 244
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.94 E-value=6.6e-07 Score=71.55 Aligned_cols=188 Identities=11% Similarity=0.077 Sum_probs=116.5
Q ss_pred EEEEEeCCCeEEEEecCCCeEEEEEecccCCe-----EEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCcc--
Q psy4393 41 WLASSSADKLIKIWGAYDGKFEKTISGHKLGI-----SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY-- 113 (247)
Q Consensus 41 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-- 113 (247)
.++.++.++.+..+|..+++............ ..... .+..++.+..++.+..+|..+++...........
T Consensus 145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 45556667777777777776665554321110 11111 2456777888899999999998876655422110
Q ss_pred -----EEEEEEcC--CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce
Q psy4393 114 -----VFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186 (247)
Q Consensus 114 -----v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 186 (247)
+..+...| .+..++.++.++.+..+|.++++.+..... .....+.. ++..+++++.++.+..+|..+++
T Consensus 223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 00000111 245677778899999999999987766553 23344444 35667778889999999999988
Q ss_pred eeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393 187 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 187 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 236 (247)
.+-.........+..... .+..|+.++.+|.|.++|.++++.+-....
T Consensus 299 ~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 299 TLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 654433111111111222 256788999999999999999887655544
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.93 E-value=5.5e-07 Score=68.31 Aligned_cols=160 Identities=14% Similarity=0.065 Sum_probs=110.8
Q ss_pred eEEEEECCCCCEEEEEcC--CCeEEEEECCCceEEEEEecCCc-cEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe
Q psy4393 72 ISDVAWSSDSRLLVSGSD--DKTLKIWELSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT 148 (247)
Q Consensus 72 v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 148 (247)
...+.|++++.++++.+. ++.|+++|+.+++.+..+..... ....+.+.. +.+.++.-.++.+.++|..+.+.+..
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEE
Confidence 578999998755555443 57999999999998877653222 223444442 23444445678899999999998888
Q ss_pred ecCC-CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC----CCeEEEEECCCCCEEEEEEcCCeEEEE
Q psy4393 149 LPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN----PPVSFVKFSPNGKYILAATLDNTLKLW 223 (247)
Q Consensus 149 ~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~vw 223 (247)
+... ... ..+++|++.++++..++.+.++|..+.+....+..... ...+.+.|. +|+..+....++.|.+-
T Consensus 102 i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 102 FTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 8654 222 33556777777777788999999999887766543221 135677787 67544444467899999
Q ss_pred ECCCcceEEEEcc
Q psy4393 224 DSKVVTPAIICST 236 (247)
Q Consensus 224 d~~~~~~~~~~~~ 236 (247)
|..+++.+..+..
T Consensus 178 D~~tg~V~~~I~~ 190 (266)
T 2iwa_A 178 SAKDGTLLGWILL 190 (266)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCcEEEEEEC
Confidence 9999988777654
No 246
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.93 E-value=7e-07 Score=69.76 Aligned_cols=185 Identities=15% Similarity=0.065 Sum_probs=122.8
Q ss_pred CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEE
Q psy4393 39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCN 118 (247)
Q Consensus 39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 118 (247)
+..|..++.++.+..+|.. ++...........+.++...+++. +..++.++.+..+|.. ++....+......+..+.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 4456667788899999987 666665554444456667777776 5557778899999988 776656654445556666
Q ss_pred EcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCC
Q psy4393 119 FNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198 (247)
Q Consensus 119 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~ 198 (247)
..+++.+++.. +.+..+| .+++...........+.++..++++.+. .++.++.+..+|. +++....+.... ..
T Consensus 184 ~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~-~~ 256 (330)
T 3hxj_A 184 IGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGK-RI 256 (330)
T ss_dssp ECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSS-CC
T ss_pred EcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCC-Cc
Confidence 77777766544 8899999 7777666666555667778888887644 4566778888875 344333332221 22
Q ss_pred eEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393 199 VSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 199 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 235 (247)
+..+.+.+++ .|..++.+|.|..+|. +++.+-.+.
T Consensus 257 ~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~ 291 (330)
T 3hxj_A 257 ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE 291 (330)
T ss_dssp CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE
Confidence 2334555555 5777888889999996 455444444
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.93 E-value=1.4e-06 Score=68.20 Aligned_cols=199 Identities=12% Similarity=0.102 Sum_probs=117.2
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEe---c-ccCCeEEEEECC-CCCEEEEEcC-------------
Q psy4393 29 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS---G-HKLGISDVAWSS-DSRLLVSGSD------------- 89 (247)
Q Consensus 29 ~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---~-~~~~v~~~~~~~-~~~~l~~~~~------------- 89 (247)
.+..+++++ +|+++ .+...+.+..++..++....... + .......+++.+ +|+..++...
T Consensus 81 ~p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEE-EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEE-EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 467899997 66544 44445558888866543322211 1 112467899999 9987776533
Q ss_pred ----CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCCCe--EEEeecCCCCCeEEEEEC
Q psy4393 90 ----DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFN 162 (247)
Q Consensus 90 ----d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~ 162 (247)
++.+..+|..+++....... ......++++|+++.++.+ ...+.|.+|++.... ....+....+ ...++++
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred ccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence 36788889876654322221 1223468899999866554 556889999987421 1111111223 6788999
Q ss_pred CCCCEEEEecC----------CCeEEEEeCCCceeeeeeccCC---CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 163 RDGSLIVSSSY----------DGLCRIWDTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 163 ~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
++|.++++... .+.|..+|.. ++.+..+.... ...+..+++ .++++.++....+.|.+++.....
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 99987666544 4678888874 55555443332 123455555 355555555567899999987666
Q ss_pred eEE
Q psy4393 230 PAI 232 (247)
Q Consensus 230 ~~~ 232 (247)
+..
T Consensus 316 ~~~ 318 (322)
T 2fp8_A 316 NSF 318 (322)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.92 E-value=5.1e-06 Score=64.56 Aligned_cols=201 Identities=11% Similarity=0.098 Sum_probs=120.8
Q ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC--CeEEEE
Q psy4393 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD--KTLKIW 96 (247)
Q Consensus 19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~v~ 96 (247)
....+... .....++|+++|+++++-..++.|..|+.... ....+. .......+++.++|+++++.... ..|..+
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 33444322 56778999999997776667889999987643 333332 23457889999999976655432 246667
Q ss_pred ECCCceEEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-EEee-------c--CCCCCeEEEEECCCC
Q psy4393 97 ELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-LKTL-------P--AHSDPVSAVHFNRDG 165 (247)
Q Consensus 97 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~-------~--~~~~~i~~~~~~~~~ 165 (247)
+..+++....... .......++..+++..+++...++.|+.+|...+.. +... . ..-.....+ +|++
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 7777764332221 112233444455555555554678899999876531 2110 0 111123444 7788
Q ss_pred CEEEEe-cCCCeEEEEeCCC-cee--eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 166 SLIVSS-SYDGLCRIWDTAS-GQC--LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 166 ~~l~~~-~~dg~i~v~d~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
..|+++ ...+.|..||+.. ++. ...+... .....++++++|++.++....++|.++|..
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 766544 5567899999864 321 1111111 122457899999877666677899999975
No 249
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.89 E-value=3.3e-07 Score=80.10 Aligned_cols=192 Identities=15% Similarity=0.170 Sum_probs=111.0
Q ss_pred CeEEEEEC-CCCCEEEEEe-CCC----eEEEEecCCC-eEEE-EEecccCCeEEEEECCCCCEEEEEcCC-----CeEEE
Q psy4393 29 AVSSVKFS-PNGEWLASSS-ADK----LIKIWGAYDG-KFEK-TISGHKLGISDVAWSSDSRLLVSGSDD-----KTLKI 95 (247)
Q Consensus 29 ~v~~~~~s-~~~~~l~~~~-~dg----~v~iw~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v 95 (247)
.+...+|| |||++||.+. .+| .|+++|+.++ +... .+.. ....+.|+|||+.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 9999887543 233 4999999887 5221 1111 13467899999888776654 36888
Q ss_pred EECCCceE--EEEEec-CCccEEEEEEcCCCCEEEEeeC---CCCEEEEECCCCe-EE--Eee-cCCCCCeEEEEECCCC
Q psy4393 96 WELSSGKC--LKTLKG-HSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVRTGK-CL--KTL-PAHSDPVSAVHFNRDG 165 (247)
Q Consensus 96 ~d~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~-~~--~~~-~~~~~~i~~~~~~~~~ 165 (247)
+++.++.. ...+.. .......+.|+|+++.|+.... ...|+++|+.++. .. ..+ .........+.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 88876532 222222 2234567889999998877653 3358888988652 12 333 2334455555554444
Q ss_pred CEEEEecCC----CeEEEEeCCCceeeee-eccC-CCCCeEEEEECCCCCEE-EEEEcCCe--EEEEEC
Q psy4393 166 SLIVSSSYD----GLCRIWDTASGQCLKT-LIDD-DNPPVSFVKFSPNGKYI-LAATLDNT--LKLWDS 225 (247)
Q Consensus 166 ~~l~~~~~d----g~i~v~d~~~~~~~~~-~~~~-~~~~v~~~~~s~~~~~l-~~~~~dg~--i~vwd~ 225 (247)
.+++....+ ..|..+|+.++..... +... ....+..+.+. +..| ++...+|. |.++|.
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 444444443 3677778765221222 2222 22234445554 4444 45566774 556664
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.87 E-value=5.6e-07 Score=77.62 Aligned_cols=189 Identities=12% Similarity=0.142 Sum_probs=125.5
Q ss_pred CCeEEEEecCCCeEEEEEeccc---C----------------------------CeEEEEECCCCCEEEEEcCCC-----
Q psy4393 48 DKLIKIWGAYDGKFEKTISGHK---L----------------------------GISDVAWSSDSRLLVSGSDDK----- 91 (247)
Q Consensus 48 dg~v~iw~~~~~~~~~~~~~~~---~----------------------------~v~~~~~~~~~~~l~~~~~d~----- 91 (247)
+|.|..+|..+++....+.... . ....+++.|+...++.+..++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 5889999999999888775210 0 011357778788888887765
Q ss_pred --------------eEEEEECCCceEEEEEecC--C-------ccEEEEEEcCCCC---EEEEeeCCCCEEEEECCCCeE
Q psy4393 92 --------------TLKIWELSSGKCLKTLKGH--S-------NYVFCCNFNPQSN---LIVSGSFDESVRIWDVRTGKC 145 (247)
Q Consensus 92 --------------~i~v~d~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~ 145 (247)
.|..+|.++++.+..++.. . .......+..+++ .++.++.+|.++++|..+|+.
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 3889999999987776542 1 2222222333554 688899999999999999987
Q ss_pred EEeecCCCC------------C------------------------eEEEEECCCCCEEEEe------------------
Q psy4393 146 LKTLPAHSD------------P------------------------VSAVHFNRDGSLIVSS------------------ 171 (247)
Q Consensus 146 ~~~~~~~~~------------~------------------------i~~~~~~~~~~~l~~~------------------ 171 (247)
+...+.... + ...++++|+..++++.
T Consensus 337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~ 416 (668)
T 1kv9_A 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR 416 (668)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence 743321110 0 0125677776665541
Q ss_pred ------------------cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393 172 ------------------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII 233 (247)
Q Consensus 172 ------------------~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 233 (247)
..+|.+..||+.+++.+-...... +.....+...+.+++.++.||.++.||.++++.+-.
T Consensus 417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence 124789999999998654332221 122223344677899999999999999999998877
Q ss_pred EccCC
Q psy4393 234 CSTPL 238 (247)
Q Consensus 234 ~~~~~ 238 (247)
+..+.
T Consensus 495 ~~~~~ 499 (668)
T 1kv9_A 495 FEAQS 499 (668)
T ss_dssp EECSS
T ss_pred ecCCC
Confidence 76654
No 251
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.87 E-value=1.6e-07 Score=74.91 Aligned_cols=91 Identities=9% Similarity=-0.099 Sum_probs=71.8
Q ss_pred eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCCeEEEEECCCceEEEEEecC-------Cc
Q psy4393 50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWELSSGKCLKTLKGH-------SN 112 (247)
Q Consensus 50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~-------~~ 112 (247)
.|.++|..+++.+..+.....+ .+.++||++.++++. .++.|.+||..+++.+..+... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999998888765555 699999999888875 3678999999999988887533 01
Q ss_pred cEEEEEEcCCCCEEEEeeC--CCCEEE--EECCC
Q psy4393 113 YVFCCNFNPQSNLIVSGSF--DESVRI--WDVRT 142 (247)
Q Consensus 113 ~v~~~~~~~~~~~l~~~~~--d~~i~v--~d~~~ 142 (247)
....+.++|+|++++.+.. +..+.+ +|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 2346789999999988864 356888 88865
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.83 E-value=8e-07 Score=66.83 Aligned_cols=160 Identities=13% Similarity=0.156 Sum_probs=109.9
Q ss_pred eEEEEECCCCCEEEEEcCCC--eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCCCeEEEe
Q psy4393 72 ISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKT 148 (247)
Q Consensus 72 v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~ 148 (247)
...+.|+ ++.++.+++.+| .|+.+|+++++.+..+..... .......+.+..++.. -.++.+.+||..+.+.+..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4678888 666667777665 899999999998887764332 2222223334455544 4578899999999999888
Q ss_pred ecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-C---CCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393 149 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-N---PPVSFVKFSPNGKYILAATLDNTLKLWD 224 (247)
Q Consensus 149 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~---~~v~~~~~s~~~~~l~~~~~dg~i~vwd 224 (247)
+...... ..+++++..|+.+..++.|.++|..+.+.+..+.... . ..++.+.|. +|+..+..-.++.|.+.|
T Consensus 123 i~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 123 FNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID 198 (262)
T ss_dssp EECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred EECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence 8754332 2333567777776667889999999988776654321 1 234557776 676444444688999999
Q ss_pred CCCcceEEEEccC
Q psy4393 225 SKVVTPAIICSTP 237 (247)
Q Consensus 225 ~~~~~~~~~~~~~ 237 (247)
.++++.+..+..+
T Consensus 199 p~tG~V~~~Id~~ 211 (262)
T 3nol_A 199 PETGKVTGIIDLN 211 (262)
T ss_dssp TTTCBEEEEEECT
T ss_pred CCCCcEEEEEECC
Confidence 9999988777653
No 253
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.82 E-value=1.5e-05 Score=63.16 Aligned_cols=201 Identities=9% Similarity=-0.041 Sum_probs=120.3
Q ss_pred CCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeEEEEECCCceEEE
Q psy4393 28 KAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSSGKCLK 105 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~ 105 (247)
..+..++|++.+..|+.+ ...+.|..++.........+.........+++.+.+. .+++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 346788998766655544 4567888888765544443433333456788887544 44565667899999987544333
Q ss_pred EEecCCccEEEEEEcCCCCEEEEe-eCC-CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeC
Q psy4393 106 TLKGHSNYVFCCNFNPQSNLIVSG-SFD-ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT 182 (247)
Q Consensus 106 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d-~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~ 182 (247)
.+.........++++|.+..++.. ... +.|..+++............-.....++++|++..|+.+ ...+.|..+|+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 333333456788999866555544 344 678888876433222222223456889999876655554 45678999998
Q ss_pred CCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
.... ...+.......-..+++. .+...++-...++|..+|..+++.
T Consensus 233 dG~~-~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 233 DGSH-RKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp TSCS-CEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCc-eEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence 7533 222322222233567773 344444444567899998655443
No 254
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.76 E-value=2e-05 Score=63.36 Aligned_cols=205 Identities=9% Similarity=-0.038 Sum_probs=122.6
Q ss_pred CCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCE-EEEEcCCCeEEEEECCCceEEE
Q psy4393 28 KAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKIWELSSGKCLK 105 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~ 105 (247)
.....++|++.+..|+ +-...+.|..++.........+.........+++.+.+.. +++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4567889987655554 4445678888887665444434333334567888875544 4555667788888876544333
Q ss_pred EEecCCccEEEEEEcCCCCEEEEee-CC-CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeC
Q psy4393 106 TLKGHSNYVFCCNFNPQSNLIVSGS-FD-ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT 182 (247)
Q Consensus 106 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~ 182 (247)
.+.........++++|.+..|+... .. +.|..+++............-.....++++|++..|+.+ +..+.|..+|+
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 3333334567889998766655544 33 678888876433222222333456889999866655544 55678999998
Q ss_pred CCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 234 (247)
.... ...+.......-..+++. .+..+++-...++|..+|..++....++
T Consensus 276 dG~~-~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 276 DGSH-RKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp TSCS-CEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCe-eEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 6533 222332222334567773 3444445556789999996555443333
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.74 E-value=2.9e-06 Score=63.86 Aligned_cols=158 Identities=9% Similarity=-0.019 Sum_probs=109.5
Q ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCcc-EEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec
Q psy4393 72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP 150 (247)
Q Consensus 72 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 150 (247)
...+.|+ ++.++.+.+.+|.|+.+|+++++.+..+ -.... -..+.... +.+....-.++.+.+||..+.+.+..+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 4677886 4566778888899999999999877766 22221 12344443 2444445567889999999999988887
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-C---CCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 151 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-N---PPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 151 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~---~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
..... ..++ +++..|+.+..++.|.++|..+.+.+..+.... . ..++.+.|. +|+..+..-.++.|.+.|.+
T Consensus 134 ~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 134 YSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp CSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred CCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence 54332 2333 567878777778899999999988776654322 1 234567776 67544444467899999999
Q ss_pred CcceEEEEcc
Q psy4393 227 VVTPAIICST 236 (247)
Q Consensus 227 ~~~~~~~~~~ 236 (247)
+++.+..+..
T Consensus 210 TG~V~~~Idl 219 (268)
T 3nok_A 210 TGTVVGVIDA 219 (268)
T ss_dssp TCBEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 9987776654
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.74 E-value=3e-06 Score=71.73 Aligned_cols=196 Identities=14% Similarity=0.113 Sum_probs=125.0
Q ss_pred CEEEEEeC------CCeEEEEecCCCeEEEEEecccCC-------------------------------------e-EEE
Q psy4393 40 EWLASSSA------DKLIKIWGAYDGKFEKTISGHKLG-------------------------------------I-SDV 75 (247)
Q Consensus 40 ~~l~~~~~------dg~v~iw~~~~~~~~~~~~~~~~~-------------------------------------v-~~~ 75 (247)
..++.++. ++.|..+|..+++....+...... + ..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 34555544 789999999999988776532110 0 124
Q ss_pred EECCCCCEEEEEcCC----------------CeEEEEECCCceEEEEEecCC----------ccEEEEEEcCCCC---EE
Q psy4393 76 AWSSDSRLLVSGSDD----------------KTLKIWELSSGKCLKTLKGHS----------NYVFCCNFNPQSN---LI 126 (247)
Q Consensus 76 ~~~~~~~~l~~~~~d----------------~~i~v~d~~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l 126 (247)
++.++...++.+..+ +.|..+|.++++.+..++... .++. ....++++ .+
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v 319 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLL 319 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEE
Confidence 555665666665532 358899999998877665321 2221 22224563 56
Q ss_pred EEeeCCCCEEEEECCCCeEEEeecCCC-------------CCe--------------------------EEEEECCCCCE
Q psy4393 127 VSGSFDESVRIWDVRTGKCLKTLPAHS-------------DPV--------------------------SAVHFNRDGSL 167 (247)
Q Consensus 127 ~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~ 167 (247)
+.++.+|.++++|..+++.+....... .++ ..++++|+..+
T Consensus 320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~ 399 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRT 399 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCE
Confidence 778889999999999998876654221 111 23567787776
Q ss_pred EEEec-------------------------------------CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCE
Q psy4393 168 IVSSS-------------------------------------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 210 (247)
Q Consensus 168 l~~~~-------------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 210 (247)
+++.. .+|.+..||+.+++.+-+..... ++....+...+..
T Consensus 400 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 400 LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGL 477 (571)
T ss_dssp EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTE
T ss_pred EEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCE
Confidence 66543 34789999999887654442221 1111112234567
Q ss_pred EEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393 211 ILAATLDNTLKLWDSKVVTPAIICSTPL 238 (247)
Q Consensus 211 l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 238 (247)
++.++.||.|+.||.++++.+-.+..+.
T Consensus 478 v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 8889999999999999998887766543
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.73 E-value=5.7e-06 Score=61.63 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=107.7
Q ss_pred eEEEEECCCCCEEEEEcCC--CeEEEEECCCceEEEEEecCCccE-EEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe
Q psy4393 72 ISDVAWSSDSRLLVSGSDD--KTLKIWELSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT 148 (247)
Q Consensus 72 v~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 148 (247)
...+.|++ +.++.+.+.. ..|+.+|+++++.+..+....... ..+.... +.+....-.++.+.+||..+.+.+..
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 56788876 5555666664 489999999999887776433221 2233332 33444445678899999999999988
Q ss_pred ecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-C---CCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393 149 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-N---PPVSFVKFSPNGKYILAATLDNTLKLWD 224 (247)
Q Consensus 149 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~---~~v~~~~~s~~~~~l~~~~~dg~i~vwd 224 (247)
+...... ..++ +++..|+++..++.|.++|..+.+.+.++.... . ..++.+.+. +|+..+..-.++.|.+.|
T Consensus 101 i~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vID 176 (243)
T 3mbr_X 101 FRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARID 176 (243)
T ss_dssp EECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEEC
T ss_pred EeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEE
Confidence 8764433 2343 466666666668899999999988776654321 1 234556665 566444444688999999
Q ss_pred CCCcceEEEEcc
Q psy4393 225 SKVVTPAIICST 236 (247)
Q Consensus 225 ~~~~~~~~~~~~ 236 (247)
.++++.+..+..
T Consensus 177 p~tG~V~~~idl 188 (243)
T 3mbr_X 177 PASGKVVAWIDL 188 (243)
T ss_dssp TTTCBEEEEEEC
T ss_pred CCCCCEEEEEEC
Confidence 999988777664
No 258
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.70 E-value=2.9e-05 Score=60.86 Aligned_cols=191 Identities=11% Similarity=0.242 Sum_probs=120.9
Q ss_pred CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCC----CC---EEEEEc-C--CCeEEEEECC--CceEEEE
Q psy4393 39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD----SR---LLVSGS-D--DKTLKIWELS--SGKCLKT 106 (247)
Q Consensus 39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--d~~i~v~d~~--~~~~~~~ 106 (247)
..++++..+.+-+.+||+ +++.+..+.. ..++.+...|+ |+ ++++.. . +..|.+|++. ++. +..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 345666677889999999 7777777753 45666666552 22 223333 3 5789999763 333 433
Q ss_pred Eec-------CCccEEEEEE--cCC-CC-EEEEeeCCCCEEEEECC-------CCeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393 107 LKG-------HSNYVFCCNF--NPQ-SN-LIVSGSFDESVRIWDVR-------TGKCLKTLPAHSDPVSAVHFNRDGSLI 168 (247)
Q Consensus 107 ~~~-------~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~v~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l 168 (247)
+.. ....+..+++ +|. +. +++....+|.+..|++. +.+.++.+... +.+..+..++....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeE
Confidence 321 1134455666 664 43 56777788999998883 23456667654 467788888888889
Q ss_pred EEecCCCeEEEEeCC-----Cceeeeeecc-CCCCCeEEEEE--CCCCC-EEEEEE-cCCeEEEEECC-CcceEEEE
Q psy4393 169 VSSSYDGLCRIWDTA-----SGQCLKTLID-DDNPPVSFVKF--SPNGK-YILAAT-LDNTLKLWDSK-VVTPAIIC 234 (247)
Q Consensus 169 ~~~~~dg~i~v~d~~-----~~~~~~~~~~-~~~~~v~~~~~--s~~~~-~l~~~~-~dg~i~vwd~~-~~~~~~~~ 234 (247)
+.+-++.-|..|+.+ +.+.+..+-. .....+..|++ .++++ +|++++ .++++.|||.. ....+..+
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 999988778888855 2333433211 12235677777 56666 777777 46799999997 44444444
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.66 E-value=1.8e-06 Score=74.43 Aligned_cols=192 Identities=14% Similarity=0.096 Sum_probs=125.2
Q ss_pred CCEEEEEeCCCeEEEEecCCCeEEEEEecccCC----------e-EEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG----------I-SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
+..|+.++.++.|.-+|..+++.+......... + ..++. .+..++.++.++.+..+|.++++.+...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 556777778899999999999988877532210 0 11122 3567888888999999999999987766
Q ss_pred ecCCcc-EEEEEEcC--CCCEEEEeeC------CCCEEEEECCCCeEEEeecCCC-C-----------------------
Q psy4393 108 KGHSNY-VFCCNFNP--QSNLIVSGSF------DESVRIWDVRTGKCLKTLPAHS-D----------------------- 154 (247)
Q Consensus 108 ~~~~~~-v~~~~~~~--~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~-~----------------------- 154 (247)
...... ...+...| .+..++.+.. ++.|+.+|.++|+.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 542100 00000111 1335555543 5889999999999887664210 0
Q ss_pred -------CeEEEEECCCCCEEEEecCCC-------------------eEEEEeCCCceeeeeeccC-C-------CCCeE
Q psy4393 155 -------PVSAVHFNRDGSLIVSSSYDG-------------------LCRIWDTASGQCLKTLIDD-D-------NPPVS 200 (247)
Q Consensus 155 -------~i~~~~~~~~~~~l~~~~~dg-------------------~i~v~d~~~~~~~~~~~~~-~-------~~~v~ 200 (247)
....++++|+...++.++.++ .|..+|..+++.+=.+... + ..+..
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 112467888888888887665 3999999999876444322 1 12333
Q ss_pred EEEECCCCC---EEEEEEcCCeEEEEECCCcceEE
Q psy4393 201 FVKFSPNGK---YILAATLDNTLKLWDSKVVTPAI 232 (247)
Q Consensus 201 ~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~~~ 232 (247)
...+..+|+ .++.++.+|.+.++|..+++++.
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 333334665 68889999999999999988763
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.66 E-value=6.8e-05 Score=58.55 Aligned_cols=204 Identities=9% Similarity=-0.005 Sum_probs=120.9
Q ss_pred CCCeEEEEECCCCCEEEEE-eCCCeEEEEecCC----CeEEEEEecccCCeEEEEECCCCCE-EEEEcCCCeEEEEECCC
Q psy4393 27 TKAVSSVKFSPNGEWLASS-SADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKIWELSS 100 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~ 100 (247)
.....+++|++.+..|+.+ ..++.|..++... ......+.........+++.+.+.. +++-...+.|.+++...
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 3567799999876655544 4568898888764 2222223222234578888875544 45556778999999875
Q ss_pred ceEEEEEecCCccEEEEEEcCCCCEEEEeeCC--CCEEEEECCCCeEEEee-cCCCCCeEEEEECCCCCEEEEe-cCCCe
Q psy4393 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD--ESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSS-SYDGL 176 (247)
Q Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~dg~ 176 (247)
......+.........++++|.+..++..... +.|..+++... ....+ ...-.....+++++++..|+.+ ...+.
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence 44333333333456788999866655554432 67888887533 22322 2223456789999877666554 45678
Q ss_pred EEEEeCCCceeeeeeccC--CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393 177 CRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII 233 (247)
Q Consensus 177 i~v~d~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 233 (247)
|..+|+.... ...+... ....-..+++.. +..+++-...++|..+|..+++.+.+
T Consensus 188 I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~~~~~ 244 (316)
T 1ijq_A 188 ISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNL 244 (316)
T ss_dssp EEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred EEEEecCCCc-eEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCcceEE
Confidence 9999987532 2233221 112235567643 44444445668999999766543333
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.62 E-value=1.1e-05 Score=68.48 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=120.3
Q ss_pred CCCeEEEEecCCCeEEEEEecccCC-------------------------------------e-EEEEECCCCCEEEEEc
Q psy4393 47 ADKLIKIWGAYDGKFEKTISGHKLG-------------------------------------I-SDVAWSSDSRLLVSGS 88 (247)
Q Consensus 47 ~dg~v~iw~~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~ 88 (247)
.+|.|+-+|..+++.+..+...... + ..+++.++..+++.+.
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~ 259 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT 259 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence 3789999999999988776532211 0 0234556667777766
Q ss_pred CC----------------CeEEEEECCCceEEEEEecCC----------ccEEEEEEc-CCC---CEEEEeeCCCCEEEE
Q psy4393 89 DD----------------KTLKIWELSSGKCLKTLKGHS----------NYVFCCNFN-PQS---NLIVSGSFDESVRIW 138 (247)
Q Consensus 89 ~d----------------~~i~v~d~~~~~~~~~~~~~~----------~~v~~~~~~-~~~---~~l~~~~~d~~i~v~ 138 (247)
.+ +.|..+|.++++....++... .++. +... .++ ..++.++.+|.++++
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 55 378899999998876665422 1122 2222 456 467778899999999
Q ss_pred ECCCCeEEEeecCCC-------------CCe--------------------------EEEEECCCCCEEEEe--------
Q psy4393 139 DVRTGKCLKTLPAHS-------------DPV--------------------------SAVHFNRDGSLIVSS-------- 171 (247)
Q Consensus 139 d~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~-------- 171 (247)
|.++++.+....... .++ ..++++|+..++++.
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 999998876543211 011 235666665555442
Q ss_pred -------------------------c------CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeE
Q psy4393 172 -------------------------S------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 220 (247)
Q Consensus 172 -------------------------~------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 220 (247)
+ ..|.+..||+.+++.+=...... +...-.+...+.+++.++.||.+
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l 496 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYL 496 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEE
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeE
Confidence 1 34788899998887643332111 11100122346678889999999
Q ss_pred EEEECCCcceEEEEccCC
Q psy4393 221 KLWDSKVVTPAIICSTPL 238 (247)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~ 238 (247)
+.||.++++.+=.++.+.
T Consensus 497 ~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 497 KARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp EEEETTTCCEEEEEECSS
T ss_pred EEEECCCCCEEEEeeCCC
Confidence 999999998887776554
No 262
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.60 E-value=0.00013 Score=58.95 Aligned_cols=207 Identities=9% Similarity=0.003 Sum_probs=123.4
Q ss_pred CCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCC----eEEEEEecccCCeEEEEECCC-CCEEEEEcCCCeEEEEECCC
Q psy4393 27 TKAVSSVKFSPNGEWLASS-SADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSS 100 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~ 100 (247)
...+..++|++.+..|+-+ ...+.|+.++.... .....+.........+++.+. ++++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 3567789999866655544 45677888877542 223333333445778888874 44555666678999999876
Q ss_pred ceEEEEEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeE
Q psy4393 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLC 177 (247)
Q Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i 177 (247)
......+.........++++|.+..|+.... .+.|...++............-.....+++++++..|+.+ .....|
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I 270 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence 5444344434445678899996666655442 3678888886443222223333456889999877766655 456789
Q ss_pred EEEeCCCceeeeeeccC--CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393 178 RIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 178 ~v~d~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 235 (247)
..+|+..... ..+... ....-..+++.. +..+.+-...++|..+|..+++.+.++.
T Consensus 271 ~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 271 SSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTSCCC-EEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEeCCCCcc-EEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 9999865432 222221 112234566532 3344444456789999966654443433
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.59 E-value=0.00012 Score=58.03 Aligned_cols=201 Identities=7% Similarity=-0.060 Sum_probs=122.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCceEEEEE
Q psy4393 29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
..+|.+..+++ +|+.+. ...|+..+.........+. .......++|++.++.|+ +-...+.|..+++........+
T Consensus 35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 34566666643 444333 3457777776555444443 334578899997655554 4456788999998765533333
Q ss_pred ecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCC-CeEEEEeCCC
Q psy4393 108 KGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYD-GLCRIWDTAS 184 (247)
Q Consensus 108 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d-g~i~v~d~~~ 184 (247)
.........+++++.+ .+.++-...+.|.+.++........+.........++++|.+..|+.+ ... +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 3223334567888754 444555566789999987543322233333456889999866655544 344 7888888765
Q ss_pred ceeeeeeccCCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEE
Q psy4393 185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAII 233 (247)
Q Consensus 185 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~ 233 (247)
.. ...+.......-..++++|++..|+.+.. .++|..+|.+......+
T Consensus 192 ~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 192 SG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp CS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 33 22332222233578999998887777764 57899999876544333
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.58 E-value=0.00011 Score=57.31 Aligned_cols=189 Identities=7% Similarity=-0.022 Sum_probs=115.2
Q ss_pred EEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCC----ceEEEEEecCCccEEE
Q psy4393 42 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSS----GKCLKTLKGHSNYVFC 116 (247)
Q Consensus 42 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~v~~ 116 (247)
|+.+. ...|+..+.........+. .......++|++.++.| .+-..++.|..+++.. ......+.........
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 44433 3468888887665554443 34457889999866555 4555578999999875 2222222222233467
Q ss_pred EEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC--CeEEEEeCCCceeeeeecc
Q psy4393 117 CNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD--GLCRIWDTASGQCLKTLID 193 (247)
Q Consensus 117 ~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~ 193 (247)
+++++.+ ++.++-...+.|.++|+........+.........++++|.+..|+.+... +.|..+++.... ...+..
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~ 160 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT 160 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEE
Confidence 7888644 445555667889999987543322233333456889999876666555432 688888876432 333322
Q ss_pred CCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEE
Q psy4393 194 DDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAII 233 (247)
Q Consensus 194 ~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~ 233 (247)
.....-..+++++++..|+.+.. .++|..+|.+......+
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 22234578999998888877764 57999999876544333
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.58 E-value=1.9e-05 Score=66.99 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=93.4
Q ss_pred CeEEEEECCCceEEEEEec--CC--------ccEEEEEEc-CCCC---EEEEeeCCCCEEEEECCCCeEEEeecCCC---
Q psy4393 91 KTLKIWELSSGKCLKTLKG--HS--------NYVFCCNFN-PQSN---LIVSGSFDESVRIWDVRTGKCLKTLPAHS--- 153 (247)
Q Consensus 91 ~~i~v~d~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--- 153 (247)
+.|..+|.++++.+..++. +. .++. .... .+|+ .++.++.+|.++++|.++++.+..+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 5799999999998776653 21 1222 1221 4563 67888999999999999998876544321
Q ss_pred ----------CC--------------------------------eEEEEECCCCCEEEEec-------------------
Q psy4393 154 ----------DP--------------------------------VSAVHFNRDGSLIVSSS------------------- 172 (247)
Q Consensus 154 ----------~~--------------------------------i~~~~~~~~~~~l~~~~------------------- 172 (247)
.+ ...++++|+..++++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 01345666555554432
Q ss_pred --------------CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393 173 --------------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL 238 (247)
Q Consensus 173 --------------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 238 (247)
.+|.+..||+.+++.+=...... +...-.....+.+++.++.||.++.||.++++.+-.+..+.
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 25789999999987653332211 11111111236678889999999999999999887777665
Q ss_pred c
Q psy4393 239 N 239 (247)
Q Consensus 239 ~ 239 (247)
.
T Consensus 528 g 528 (582)
T 1flg_A 528 G 528 (582)
T ss_dssp C
T ss_pred C
Confidence 4
No 266
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.57 E-value=0.00013 Score=57.05 Aligned_cols=205 Identities=6% Similarity=-0.023 Sum_probs=120.9
Q ss_pred CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeE-EEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCCceEEE
Q psy4393 29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSSGKCLK 105 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~ 105 (247)
...+++|++.+..|+ +-...+.|..++...... ...+.........+++.+.+ ..+++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 456888988655554 444567888888765432 12222222345678888744 445555667899999987543322
Q ss_pred EEecCCccEEEEEEcCCCCEEEEee--CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeC
Q psy4393 106 TLKGHSNYVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT 182 (247)
Q Consensus 106 ~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~ 182 (247)
.+.........++++|.+..|+... ..+.|..+++............-.....++++|++..|+.+ +..+.|..+|+
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 2323344567889998766665554 25678888876432222222223346789999976655554 55678999998
Q ss_pred CCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 235 (247)
.... ...+.......-..+++.. +..+.+-...+.|..+|..+++...++.
T Consensus 196 dG~~-~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 196 DGTN-RQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TSCS-CEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCc-eEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 6433 2333322222335566653 3344444456899999987665444433
No 267
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=4e-05 Score=62.53 Aligned_cols=152 Identities=11% Similarity=0.093 Sum_probs=96.1
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC-CC----eEEEEECCCce
Q psy4393 29 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DK----TLKIWELSSGK 102 (247)
Q Consensus 29 ~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~v~d~~~~~ 102 (247)
....++++| ++..|+.+...+.|+.+|...+...... ........++|+++++.|+.+.. ++ .+..++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 456889998 4566666655578888988766544333 34455788999999996655543 22 3433443 222
Q ss_pred EE--EEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeecC-CCCCeEEEEECCCCCEEE-EecCCCeE
Q psy4393 103 CL--KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPA-HSDPVSAVHFNRDGSLIV-SSSYDGLC 177 (247)
Q Consensus 103 ~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~-~~~~dg~i 177 (247)
.. ..+.. ......++++| ++.++++-..++.|..++...+........ .......++++|++++|+ +-...+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 11 22221 22245678899 777777766778899999987654222222 123457899999999554 44566788
Q ss_pred EEEeCC
Q psy4393 178 RIWDTA 183 (247)
Q Consensus 178 ~v~d~~ 183 (247)
..++..
T Consensus 295 ~~~~~d 300 (430)
T 3tc9_A 295 LRSDYD 300 (430)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 887754
No 268
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.54 E-value=0.00022 Score=62.81 Aligned_cols=197 Identities=11% Similarity=0.118 Sum_probs=127.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec------ccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG------HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 101 (247)
..|.++..+++|.+- .|+.++-|..|+............ ....|.++...++|+.. .|+.++-+..|+..++
T Consensus 310 ~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQ 387 (795)
T ss_dssp SCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTC
T ss_pred CcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCC
Confidence 568889898888754 456667788887655433221110 13458899888888755 4666666888998776
Q ss_pred eEEEEEec--------CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec----CCCCCeEEEEECCCCCEEE
Q psy4393 102 KCLKTLKG--------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP----AHSDPVSAVHFNRDGSLIV 169 (247)
Q Consensus 102 ~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~ 169 (247)
........ ....|.++..++++.++..|+.++.|..+|..+++...... .....|.++...++|.+.+
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi 467 (795)
T 4a2l_A 388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL 467 (795)
T ss_dssp CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence 54332211 13568888888888845566776779999998776433221 1245789999998888666
Q ss_pred EecCCCeEEEEeCCCceeeeeecc-----CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393 170 SSSYDGLCRIWDTASGQCLKTLID-----DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 170 ~~~~dg~i~v~d~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
... + -+..||..+++....... .....|.++..+++|++.+.+ . +-|..||.+....
T Consensus 468 gt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 468 GTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI 529 (795)
T ss_dssp EES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE
T ss_pred Eec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE
Confidence 543 4 478899887654332211 112468889999998866554 4 5588888765543
No 269
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.54 E-value=0.00021 Score=62.82 Aligned_cols=192 Identities=11% Similarity=0.080 Sum_probs=126.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec--------ccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG--------HKLGISDVAWSSDSRLLVSGSDDKTLKIWELS 99 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 99 (247)
..|.++...++|.+- .|+.++-|..|+..++........ ....|.++...++++.|..|+.++-+..+|..
T Consensus 357 ~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~ 435 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN 435 (795)
T ss_dssp SSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred CeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence 458899998888754 466776788898776654332211 13458888888888845566666778899988
Q ss_pred CceEEEEEe----cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec------CCCCCeEEEEECCCCCEEE
Q psy4393 100 SGKCLKTLK----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP------AHSDPVSAVHFNRDGSLIV 169 (247)
Q Consensus 100 ~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~ 169 (247)
+++...... .....|.++...+++.+.+... +.+..||..+++...... .....|.++..+++|.+.+
T Consensus 436 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 436 SGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp TCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred CCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence 776433221 1234688888888888666543 458899988765432221 1235689999999998766
Q ss_pred EecCCCeEEEEeCCCceeeeeecc------CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393 170 SSSYDGLCRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 170 ~~~~dg~i~v~d~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
.+. +-+..||..+++. .+.. .....|.++..+++|.+.++ +.+ -|..||.+..
T Consensus 514 gt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 514 GGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFNEKDK 572 (795)
T ss_dssp EES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEETTTT
T ss_pred EeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeECCCCC
Confidence 554 4477888776654 2211 11235788888999885554 434 5778887654
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.51 E-value=1.6e-05 Score=68.44 Aligned_cols=113 Identities=13% Similarity=0.247 Sum_probs=71.4
Q ss_pred EEEECC-CCCEEEEEeCCC-----------eEEEEecCCCeEEE--EEec-ccCCeEEEEECCCCCEEEEEcC-CCeEEE
Q psy4393 32 SVKFSP-NGEWLASSSADK-----------LIKIWGAYDGKFEK--TISG-HKLGISDVAWSSDSRLLVSGSD-DKTLKI 95 (247)
Q Consensus 32 ~~~~s~-~~~~l~~~~~dg-----------~v~iw~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~i~v 95 (247)
..++.+ +++.++.|+.+. .+.+||..+++... .+.. +.......++.++++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456667 888888776542 57889987665322 2221 2222445677889999998884 458999
Q ss_pred EECCCceEEEEEecCCcc-EEEEEEcCCCCEEEEee-CC-----CCEEEEECCCCe
Q psy4393 96 WELSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS-FD-----ESVRIWDVRTGK 144 (247)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~d-----~~i~v~d~~~~~ 144 (247)
||..+.+....-.....+ -..+...+++++++.|+ .+ ..+.+||..+.+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 999876543221111111 12345567889999988 34 468899987654
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.51 E-value=0.00017 Score=57.97 Aligned_cols=199 Identities=7% Similarity=-0.050 Sum_probs=120.1
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEEEEec
Q psy4393 31 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKG 109 (247)
Q Consensus 31 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~ 109 (247)
.+.+..+. .+|+.+. ...|+.++.........+. .......++|.+.+..| .+-...+.|..+++........+..
T Consensus 80 ~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 80 SCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred eECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 34444443 3444333 4567788876655544443 33457889999765555 4555678899999876654333332
Q ss_pred CCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec-CC-CeEEEEeCCCce
Q psy4393 110 HSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YD-GLCRIWDTASGQ 186 (247)
Q Consensus 110 ~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~v~d~~~~~ 186 (247)
.......+++++.+. +.++-...+.|.+.++........+.........++++|.+..|+.+. .. +.|..+++....
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 223345677887544 445555567788888764432222333334568899998766665544 33 678888876543
Q ss_pred eeeeeccCCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEE
Q psy4393 187 CLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAII 233 (247)
Q Consensus 187 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~ 233 (247)
...+.......-..++++|++..|+.+.. .++|..+|.+......+
T Consensus 237 -~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 237 -RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp -CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred -cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 22232222233478999988877777664 57899999876544333
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.50 E-value=0.00019 Score=55.66 Aligned_cols=187 Identities=12% Similarity=0.060 Sum_probs=108.9
Q ss_pred CCeEEEEECCCCCEEEEEeCC-C-eEEEEecCCCeEEEEEecc-cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE-
Q psy4393 28 KAVSSVKFSPNGEWLASSSAD-K-LIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC- 103 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~d-g-~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~- 103 (247)
.....++++++|+++++.... + .|..++..+++........ ......++..+++..+++...++.|..+|..+++.
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 457889999999966554332 2 4666676666654333221 12234455555555555555688999999875421
Q ss_pred EEEEe---------cCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCC-CeE--EEeecCCCCCeEEEEECCCCCEEEE
Q psy4393 104 LKTLK---------GHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRT-GKC--LKTLPAHSDPVSAVHFNRDGSLIVS 170 (247)
Q Consensus 104 ~~~~~---------~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~ 170 (247)
+.... ........+ ++++..++.+ ...+.|..||+.. ++. ...+.. ......++++++|.++++
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEE
Confidence 11110 011123344 7777655544 5567899999864 321 111111 122345789999988777
Q ss_pred ecCCCeEEEEeCCCceeeee-eccCCCCCeEEEEEC---CCCCEEEEEEcCC
Q psy4393 171 SSYDGLCRIWDTASGQCLKT-LIDDDNPPVSFVKFS---PNGKYILAATLDN 218 (247)
Q Consensus 171 ~~~dg~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~s---~~~~~l~~~~~dg 218 (247)
....+.|.++|.. ++.... ..........+++|. |+++.|+.++..+
T Consensus 229 ~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 229 THIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred eCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 6677889999975 443221 111222446889998 8988887776543
No 273
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.47 E-value=0.00023 Score=55.41 Aligned_cols=206 Identities=9% Similarity=0.073 Sum_probs=125.2
Q ss_pred EEEecCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCeEEEEEecc-------cCCeEEEEE---CCCCCEEEEEc-
Q psy4393 21 FTLAGHTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAW---SSDSRLLVSGS- 88 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~~~~- 88 (247)
+.+....----+++|++....+..++ ..+.|..|+...+......... ...+..+.| .|+++++++..
T Consensus 6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 34444444445788988666555555 7899999998755443332111 113578999 68877766543
Q ss_pred ------------CCCeEEEEECC---CceEEEEEec-------------CCccEEEEEEcCCCCEEEEeeCC-CCEEEEE
Q psy4393 89 ------------DDKTLKIWELS---SGKCLKTLKG-------------HSNYVFCCNFNPQSNLIVSGSFD-ESVRIWD 139 (247)
Q Consensus 89 ------------~d~~i~v~d~~---~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d-~~i~v~d 139 (247)
.+..+..||+. +++.+....- .......+...++|+..++++.. +.|..++
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 25778899998 7765544331 11246789999999999998888 8777777
Q ss_pred CCCCeEEEee--cC----CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee--eeeec-cC--CCCCeEE-EEECCC
Q psy4393 140 VRTGKCLKTL--PA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC--LKTLI-DD--DNPPVSF-VKFSPN 207 (247)
Q Consensus 140 ~~~~~~~~~~--~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~-~~--~~~~v~~-~~~s~~ 207 (247)
.... .+..+ .. .....+.|+++|++..|++....|.+..+|+..... +.... .. ....... +..--+
T Consensus 166 pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~ 244 (334)
T 2p9w_A 166 ADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG 244 (334)
T ss_dssp TTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET
T ss_pred CCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC
Confidence 6533 22221 11 111256899999999888887799999999874322 11100 10 1112233 233346
Q ss_pred CCEE-EEEEcCCeEEEEECCC
Q psy4393 208 GKYI-LAATLDNTLKLWDSKV 227 (247)
Q Consensus 208 ~~~l-~~~~~dg~i~vwd~~~ 227 (247)
|+.| ++....+.+.+.+.+.
T Consensus 245 G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 245 NESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp TEEEEEEEETTEEEEEECSST
T ss_pred CEEEEEEcCCCCEEEEECCCC
Confidence 7774 4444566666665443
No 274
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.47 E-value=1.9e-05 Score=66.83 Aligned_cols=179 Identities=17% Similarity=0.124 Sum_probs=109.7
Q ss_pred EEECCCCCEEEEEeCC----------------CeEEEEecCCCeEEEEEeccc----------CCeEEEEECCCCC---E
Q psy4393 33 VKFSPNGEWLASSSAD----------------KLIKIWGAYDGKFEKTISGHK----------LGISDVAWSSDSR---L 83 (247)
Q Consensus 33 ~~~s~~~~~l~~~~~d----------------g~v~iw~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~ 83 (247)
+++.+....++.+..+ +.|..+|..+++....+.... .++. ....++|+ .
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL 318 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence 4566666666555432 358889999998887765321 1111 12223564 5
Q ss_pred EEEEcCCCeEEEEECCCceEEEEEecCC-------------ccE--------------------------EEEEEcCCCC
Q psy4393 84 LVSGSDDKTLKIWELSSGKCLKTLKGHS-------------NYV--------------------------FCCNFNPQSN 124 (247)
Q Consensus 84 l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~~~ 124 (247)
++.++.+|.+.++|..+++.+....... .++ ..++++|+..
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 6778889999999999998776554221 011 1246677777
Q ss_pred EEEEee-------------------------------------CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCE
Q psy4393 125 LIVSGS-------------------------------------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSL 167 (247)
Q Consensus 125 ~l~~~~-------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 167 (247)
+++... .++.|..||+.+++.+....... ++....+...+..
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGL 477 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCE
Confidence 776653 24789999999998877664322 1211112223556
Q ss_pred EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEE
Q psy4393 168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 213 (247)
Q Consensus 168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 213 (247)
+++++.||.+..+|.++++.+-.+.......-.-+.+..+|+.++.
T Consensus 478 v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 7778999999999999999876664432211111334566664443
No 275
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.47 E-value=3.7e-05 Score=65.28 Aligned_cols=194 Identities=10% Similarity=0.017 Sum_probs=123.9
Q ss_pred CCEEEEEeC-CCeEEEEec-CCCeEEEEEecccCC-----------eEEEEECCCCCE----EEEEcCCCeEEEEECCCc
Q psy4393 39 GEWLASSSA-DKLIKIWGA-YDGKFEKTISGHKLG-----------ISDVAWSSDSRL----LVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 39 ~~~l~~~~~-dg~v~iw~~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~d~~i~v~d~~~~ 101 (247)
+..|+.++. ++.|.-+|. .+++.+......... ...++..|.+.. ++.++.++.+..+|.+++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456666777 888999999 899988776532210 123445333334 778888999999999999
Q ss_pred eEEEEEecCCc----cEEE-EEEcCCCCEEEEee------CCCCEEEEECCCCeEEEeecCCCCC---------------
Q psy4393 102 KCLKTLKGHSN----YVFC-CNFNPQSNLIVSGS------FDESVRIWDVRTGKCLKTLPAHSDP--------------- 155 (247)
Q Consensus 102 ~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~~~--------------- 155 (247)
+.+........ .+.. ..+. ++ .++.++ .++.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 87766543220 1110 0111 33 455554 3789999999999987665432110
Q ss_pred -----------------------eEEEEECCCCCEEEEecCC----------------CeEEEEeCCCceeeeeeccCC-
Q psy4393 156 -----------------------VSAVHFNRDGSLIVSSSYD----------------GLCRIWDTASGQCLKTLIDDD- 195 (247)
Q Consensus 156 -----------------------i~~~~~~~~~~~l~~~~~d----------------g~i~v~d~~~~~~~~~~~~~~- 195 (247)
...+.+++...+++.+..+ +.+..+|.++++.+=.+...+
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 0134566777777777655 378999999998764443321
Q ss_pred --------CCCeEEEEEC-CCC---CEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393 196 --------NPPVSFVKFS-PNG---KYILAATLDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 196 --------~~~v~~~~~s-~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~ 235 (247)
..++. +... .+| +.++.++.+|.+.++|.++++++-...
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 12222 2222 567 567778899999999999988876544
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.47 E-value=8.6e-05 Score=60.63 Aligned_cols=196 Identities=10% Similarity=0.093 Sum_probs=114.1
Q ss_pred CeEEEEECCC--CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC---C-eEEEEECCCce
Q psy4393 29 AVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---K-TLKIWELSSGK 102 (247)
Q Consensus 29 ~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~v~d~~~~~ 102 (247)
....++|+|+ +..|+.+...+.|+.++..++..... .........++++++|+++++.... . .+...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999985 44455555448899999877665443 3344558899999999955444321 1 23333322211
Q ss_pred E-EEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEe-ecCC-CCCeEEEEECCCCCEEE-EecCCCeE
Q psy4393 103 C-LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKT-LPAH-SDPVSAVHFNRDGSLIV-SSSYDGLC 177 (247)
Q Consensus 103 ~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~-~~~i~~~~~~~~~~~l~-~~~~dg~i 177 (247)
. ...+. .......++++| ++.+.++-..++.|+.+|..++..... +... ...-..++++|+++.|+ +-.....|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 01111 112234567888 677766666778899999886654222 2211 12234699999998554 44556789
Q ss_pred EEEeCC--Cceee--eeeccC--------------CCCCeEEEEE---------CCCCCEEEEEEcCCeEEEEECC
Q psy4393 178 RIWDTA--SGQCL--KTLIDD--------------DNPPVSFVKF---------SPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 178 ~v~d~~--~~~~~--~~~~~~--------------~~~~v~~~~~---------s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
..++.. ++... ..+... .-..-..+++ +++|.+.++-...++|+.++..
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~ 373 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE 373 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC
Confidence 987764 22211 111110 0012356888 7777666666667899999853
No 277
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.45 E-value=5.6e-05 Score=58.79 Aligned_cols=155 Identities=11% Similarity=0.123 Sum_probs=106.4
Q ss_pred eEEEEECCCCCEEEEEc-CCCeEEEEECCCceEEEEEecC-------CccEEEEEE---cCCCCEEEEee----------
Q psy4393 72 ISDVAWSSDSRLLVSGS-DDKTLKIWELSSGKCLKTLKGH-------SNYVFCCNF---NPQSNLIVSGS---------- 130 (247)
Q Consensus 72 v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~~~~---------- 130 (247)
-.+++|++....+..++ ..+.|..|+...+......... ...+..+.| .|++.++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 45678987555555554 7899999998755433322111 113578999 68877777543
Q ss_pred ---CCCCEEEEECC---CCeEEEeecC-------------CCCCeEEEEECCCCCEEEEecCC-CeEEEEeCCCceeeee
Q psy4393 131 ---FDESVRIWDVR---TGKCLKTLPA-------------HSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTASGQCLKT 190 (247)
Q Consensus 131 ---~d~~i~v~d~~---~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~ 190 (247)
.+..+..||+. +++.+..... .......|+..++|+..++++.. +.|..++..... ...
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-VST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-EEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-Eee
Confidence 25679999999 7766544321 11247889999999999988888 888888776542 222
Q ss_pred eccC-----CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393 191 LIDD-----DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV 227 (247)
Q Consensus 191 ~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 227 (247)
+... .....+.++++|+|..|++....|+|..+|.+.
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2111 122356899999999999987799999999874
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.43 E-value=0.00039 Score=56.10 Aligned_cols=191 Identities=8% Similarity=-0.006 Sum_probs=120.4
Q ss_pred EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCc----eEEEEEecCCccEE
Q psy4393 41 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSG----KCLKTLKGHSNYVF 115 (247)
Q Consensus 41 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~----~~~~~~~~~~~~v~ 115 (247)
+|+.+. ...|+..++........+. ....+..++|++.+..|+ +-...+.|+.+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444433 4678888887655544443 345678999998666554 4455788988888652 22233333344567
Q ss_pred EEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC--CCeEEEEeCCCceeeeeec
Q psy4393 116 CCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLI 192 (247)
Q Consensus 116 ~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~ 192 (247)
.+++++ .+++.++-...+.|.+.++........+.........++++|.+..|+.+.. .+.|...++.... ...+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~ 241 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV 241 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEE
Confidence 788887 4555555566788999998765443333333445688999997666665542 3678888886543 22332
Q ss_pred cCCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEEE
Q psy4393 193 DDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 193 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~ 234 (247)
...-..-..|++++++..|+.+.. .++|..+|.+......+.
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 284 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 284 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE
Confidence 222234578999998888887764 578999998766554443
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=2e-05 Score=64.34 Aligned_cols=154 Identities=10% Similarity=0.107 Sum_probs=95.3
Q ss_pred eEEEEECC-CCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CC----CEEEEECCCCeE
Q psy4393 72 ISDVAWSS-DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE----SVRIWDVRTGKC 145 (247)
Q Consensus 72 v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~v~d~~~~~~ 145 (247)
...++++| ++..|..+...+.|+.+|+.++.... +.........++++++++.++.+.. ++ .+..++......
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 46788998 45556555554889999988765433 3334455778999999995555543 22 233344322111
Q ss_pred -EEeecCCCCCeEEEEECC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEE
Q psy4393 146 -LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKL 222 (247)
Q Consensus 146 -~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v 222 (247)
...+.. ......++++| ++.++++-..++.|..++...+.............-..++|+|+|++|+.+. ..++|..
T Consensus 218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 112211 12235678999 7777777667889999999876542222222222346799999999666665 5679999
Q ss_pred EECCC
Q psy4393 223 WDSKV 227 (247)
Q Consensus 223 wd~~~ 227 (247)
++.+.
T Consensus 297 ~~~d~ 301 (430)
T 3tc9_A 297 SDYDW 301 (430)
T ss_dssp EEEET
T ss_pred EeCCc
Confidence 87653
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.35 E-value=0.0011 Score=58.07 Aligned_cols=205 Identities=7% Similarity=-0.022 Sum_probs=121.4
Q ss_pred CCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCC----eEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCC
Q psy4393 27 TKAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSS 100 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~ 100 (247)
...+..++|++.+..|+ +-...+.|+.+++... .....+.........|++.+.++.| ++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 45567888888555544 4445577887777542 2223333233456778888776544 5556678999999875
Q ss_pred ceEEEEEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeE
Q psy4393 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLC 177 (247)
Q Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i 177 (247)
......+.........++++|.+..|+.... .+.|...++........+...-.....|++++.+..|+.+ .....|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I 582 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence 5443333334455778999997666655443 2678888886544333333333467889999776666655 445689
Q ss_pred EEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEE
Q psy4393 178 RIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAII 233 (247)
Q Consensus 178 ~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~ 233 (247)
..+++............. -..-..|++. +..|+.+. ..++|...|..++..+.+
T Consensus 583 ~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~ 638 (791)
T 3m0c_C 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNL 638 (791)
T ss_dssp EEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred EEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEE
Confidence 999986543322222111 1122345553 44566555 457888888766644333
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.35 E-value=8.3e-05 Score=65.07 Aligned_cols=200 Identities=13% Similarity=0.071 Sum_probs=103.3
Q ss_pred EEEEECCCCCEEEEEeCC-----CeEEEEecCCCeE--EEEEec-ccCCeEEEEECCCCCEEEEEcC---CCeEEEEECC
Q psy4393 31 SSVKFSPNGEWLASSSAD-----KLIKIWGAYDGKF--EKTISG-HKLGISDVAWSSDSRLLVSGSD---DKTLKIWELS 99 (247)
Q Consensus 31 ~~~~~s~~~~~l~~~~~d-----g~v~iw~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~ 99 (247)
.+++|+|||+.|+....+ ..|.++++.++.. ...+.. ...-...+.|+|||++|+..+. ...|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 367899999988776654 2577777765432 222222 2223567899999998876552 3468888987
Q ss_pred Cc--eE-EEEE-ecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCCeEEEe-ecCCCC--CeEEEEECCCCCEE
Q psy4393 100 SG--KC-LKTL-KGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKT-LPAHSD--PVSAVHFNRDGSLI 168 (247)
Q Consensus 100 ~~--~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l 168 (247)
++ +. +..+ ...........|+.++.+++....+ ..|..+|+.++..... +..+.. .+..+.+. .+.++
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv 382 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLV 382 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEE
Confidence 65 22 0223 2233444555554444444444433 2566777764222222 222332 34445554 23345
Q ss_pred EEecCCCe--EEEEeC-------CCceeeeeeccCCCCCeEEEEE----CCCCCEE-EEEEcC---CeEEEEECCCcceE
Q psy4393 169 VSSSYDGL--CRIWDT-------ASGQCLKTLIDDDNPPVSFVKF----SPNGKYI-LAATLD---NTLKLWDSKVVTPA 231 (247)
Q Consensus 169 ~~~~~dg~--i~v~d~-------~~~~~~~~~~~~~~~~v~~~~~----s~~~~~l-~~~~~d---g~i~vwd~~~~~~~ 231 (247)
++...++. +.++|+ .+++....+.......+..+.+ ++++..+ ++.+.. +.+..+|..+++..
T Consensus 383 ~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 383 VAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp EEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred EEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 55566674 556675 3333122222222222333322 4465544 443332 46777777665543
No 282
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00046 Score=60.58 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=121.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE---ecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL 104 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 104 (247)
..|.++...++|.+. .|+.++-|..|+..++...... ......|.++...+++.+.+ |+.++-+..++..+++..
T Consensus 363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred cceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence 458888888887754 4555566888886543322111 11235688888888877554 555566888898776543
Q ss_pred EEEe--cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC-----CCCeEEEEECCCCCEEEEecCCCeE
Q psy4393 105 KTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-----SDPVSAVHFNRDGSLIVSSSYDGLC 177 (247)
Q Consensus 105 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i 177 (247)
.... .....|.++...+++.+.+. +. +.+..+|..+++........ ...+.++..+++|.+.+....+| +
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l 517 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V 517 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E
T ss_pred EeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E
Confidence 2211 12356888888887775554 44 56889998776533222211 35789999999998666443344 6
Q ss_pred EEEeCCCceeeeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 178 RIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 178 ~v~d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
..||..+++... +... ....|.++..+++|.+.++ +.+|.|..||.+...
T Consensus 518 ~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 518 GIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFD 570 (781)
T ss_dssp EEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCC
T ss_pred EEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCc
Confidence 778887665332 2211 1345788888888875554 446665888876654
No 283
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.34 E-value=0.00039 Score=58.99 Aligned_cols=195 Identities=15% Similarity=0.052 Sum_probs=120.5
Q ss_pred CCEEEEEeCCCeEEEEecCCCeEEEEEecccCC-e--------EEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec
Q psy4393 39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-I--------SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG 109 (247)
Q Consensus 39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v--------~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 109 (247)
+..++.++.++.|.-+|..+++.+......... . ..++. .+..++.++.++.+..+|.++++.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 344555555455888999999988777543211 0 11122 356778888899999999999988766543
Q ss_pred CCc----cE---EEEEEc-CCCC-EEEEeeC------CCCEEEEECCCCeEEEeecCCCCC-------------------
Q psy4393 110 HSN----YV---FCCNFN-PQSN-LIVSGSF------DESVRIWDVRTGKCLKTLPAHSDP------------------- 155 (247)
Q Consensus 110 ~~~----~v---~~~~~~-~~~~-~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~------------------- 155 (247)
... .+ ..+.-. .+++ .+++++. ++.|+.+|..+|+.+.........
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 221 01 011111 1233 5666543 789999999999877654321100
Q ss_pred ----------------------eEEEEECCCCCEEEEecC--------------------C----CeEEEEeCCCceeee
Q psy4393 156 ----------------------VSAVHFNRDGSLIVSSSY--------------------D----GLCRIWDTASGQCLK 189 (247)
Q Consensus 156 ----------------------i~~~~~~~~~~~l~~~~~--------------------d----g~i~v~d~~~~~~~~ 189 (247)
...++++|...+++.+.. | +.|..+|..+++.+=
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 113456676667766552 2 589999999998765
Q ss_pred eeccC-C--------CCCeEEEEEC-CCCC---EEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393 190 TLIDD-D--------NPPVSFVKFS-PNGK---YILAATLDNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 190 ~~~~~-~--------~~~v~~~~~s-~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~ 236 (247)
.+... + ..++. +... .+|+ .++.++.+|.+.++|.++++++-....
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 44321 1 12222 2222 5674 788899999999999999988766544
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.28 E-value=8e-06 Score=70.77 Aligned_cols=207 Identities=8% Similarity=0.012 Sum_probs=113.1
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCeEEEEecCC----CeEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCCc
Q psy4393 28 KAVSSVKFSPNGEWLASSS-ADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSSG 101 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~ 101 (247)
..+..++|++.+..|+.+. ..+.|+.++... ......+.........+++.+.+ .++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456788988766666543 456788887754 11111121111234567887644 44455456778999998755
Q ss_pred eEEEEEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE-EEecCCCeEE
Q psy4393 102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDGLCR 178 (247)
Q Consensus 102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~ 178 (247)
.....+.........++++|.+..|+.... .+.|..+++........+...-.....|+++|++..| ++-+..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 433333322233456788886555544432 2678887775332211111112334678999875544 4555667899
Q ss_pred EEeCCCceeeeeeccC--CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393 179 IWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 179 v~d~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 236 (247)
++|+.... ...+... ....-..+++..+ .++++....++|..+|..+++.+.++..
T Consensus 566 ~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 566 SIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 99986533 2222211 1111123445443 3344444568999999877665555443
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.28 E-value=0.001 Score=54.31 Aligned_cols=196 Identities=10% Similarity=0.104 Sum_probs=111.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCC-----eEEEEecCCCeE-EEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEECC
Q psy4393 27 TKAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKF-EKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELS 99 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~~dg-----~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~ 99 (247)
......++|+++|+++++ ...+ .+...+...+.. ...+. .......++++| ++.++++-..++.|+.++..
T Consensus 181 ~~~P~giavd~dG~lyVa-d~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 181 IGQCADVNFTLNGDMVVV-DDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp CSCEEEEEECTTCCEEEE-ECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred CCCccEEEECCCCCEEEE-cCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 345788999999994444 3321 133333221111 11222 233456688999 67766666678899999988
Q ss_pred CceEEEEE-ecC-CccEEEEEEcCCCCEEE-EeeCCCCEEEEECC--CCeE--EEeecC---------------CCCCeE
Q psy4393 100 SGKCLKTL-KGH-SNYVFCCNFNPQSNLIV-SGSFDESVRIWDVR--TGKC--LKTLPA---------------HSDPVS 157 (247)
Q Consensus 100 ~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~--~~~~--~~~~~~---------------~~~~i~ 157 (247)
++.....+ ... ...-..++++|+++.|+ +-...+.|+.++.. ++.. ...+.. .-....
T Consensus 259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~ 338 (433)
T 4hw6_A 259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPN 338 (433)
T ss_dssp TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEE
T ss_pred CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCc
Confidence 66652222 211 12234689999998554 44556789998765 2211 011110 012346
Q ss_pred EEEE---------CCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-----------------CCCeEEEEEC-CCCCE
Q psy4393 158 AVHF---------NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-----------------NPPVSFVKFS-PNGKY 210 (247)
Q Consensus 158 ~~~~---------~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------------~~~v~~~~~s-~~~~~ 210 (247)
.+++ .+++.++++-.....|+.++. ++... .+.... -..-..++++ ++|.+
T Consensus 339 giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~l 416 (433)
T 4hw6_A 339 QGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCF 416 (433)
T ss_dssp EEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEE
T ss_pred cEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEE
Confidence 6888 777777777777788999985 44332 221110 0123568888 55555
Q ss_pred EEEEEcCCeEEEEECC
Q psy4393 211 ILAATLDNTLKLWDSK 226 (247)
Q Consensus 211 l~~~~~dg~i~vwd~~ 226 (247)
+++=...++|+.++..
T Consensus 417 yVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 417 YIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCEEEEEecC
Confidence 4444456788887653
No 286
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.28 E-value=0.00033 Score=52.71 Aligned_cols=169 Identities=13% Similarity=0.111 Sum_probs=104.3
Q ss_pred EecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCceEEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC
Q psy4393 65 ISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142 (247)
Q Consensus 65 ~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 142 (247)
+.+-...+..++|+|+++.|+ +...++.|...|.. ++.++.+.- .......+++.+++.++++.-.++.+.++++..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 334445689999999876655 46678889999987 777666642 224567788888887767655677888888765
Q ss_pred CeE---EEeec------CCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC---ceeeeeec------cCCCCCeEEEEE
Q psy4393 143 GKC---LKTLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLI------DDDNPPVSFVKF 204 (247)
Q Consensus 143 ~~~---~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~------~~~~~~v~~~~~ 204 (247)
... +.... ........++++|.+..|+++.......+|.... ...+.... .........+++
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 432 22221 1233468999999987777666554444444321 11111110 112234578899
Q ss_pred CCCCCEEE-EEEcCCeEEEEECCCcceEEEEc
Q psy4393 205 SPNGKYIL-AATLDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 205 s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~ 235 (247)
+|....|+ .....+.|.++|.+.. ++..+.
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~ 211 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLVGE-VIGEMS 211 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCC-EEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEEcCCCC-EEEEEE
Confidence 98765554 4556678888886644 444433
No 287
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=0.0018 Score=56.78 Aligned_cols=197 Identities=12% Similarity=0.113 Sum_probs=123.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe------c---ccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------G---HKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~------~---~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
...|.++...++|.+ ..|+.++-|..++........... . ....|.++...++|.+. .|+.++-+..|+
T Consensus 312 ~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence 356889999988874 445666778888876544332211 0 13458888888887755 455455577888
Q ss_pred CCCceEEEEE---ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee--cCCCCCeEEEEECCCCCEEEEec
Q psy4393 98 LSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSS 172 (247)
Q Consensus 98 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~ 172 (247)
..++...... ......|.++...+++.+.+ |+.++.+..+|..+++..... ......|.++...+++.+.+..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt- 467 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT- 467 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-
Confidence 7654432211 11235688888888887665 565667889998776543221 1234578999988888765544
Q ss_pred CCCeEEEEeCCCceeeeeeccC----CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 173 YDGLCRIWDTASGQCLKTLIDD----DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 173 ~dg~i~v~d~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
. +-+..||..+++........ ....+.++..+++|.+.+ |+.++-|..||.+...
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence 4 55888998776543322111 134688898999887554 4544447778876543
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.24 E-value=0.0021 Score=56.39 Aligned_cols=185 Identities=6% Similarity=-0.034 Sum_probs=114.9
Q ss_pred CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCc----eEEEEEecCCccEEEEEEcCC
Q psy4393 48 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSG----KCLKTLKGHSNYVFCCNFNPQ 122 (247)
Q Consensus 48 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~~ 122 (247)
...|+..++........+. ....+..++|.+....| ++-...+.|+.+++... .....+.........+++++.
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 4567777776555444443 34557789998855544 55556678888888642 222233323344567888876
Q ss_pred CC-EEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC--CCeEEEEeCCCceeeeeeccCCCCCe
Q psy4393 123 SN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPV 199 (247)
Q Consensus 123 ~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~v 199 (247)
+. ++++-...+.|.+.++........+.........|+++|.+..|+.+.. .+.|...++.... ...+.......-
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~~~l~~P 560 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP 560 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCE
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEeCCCCCc
Confidence 64 4455566788999998755433333333445788999997666665543 2678888886543 333333333345
Q ss_pred EEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEEE
Q psy4393 200 SFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 200 ~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~ 234 (247)
..|++++.+..|+.+.. .++|..++.+......+.
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~ 596 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 596 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe
Confidence 78999988888877764 468999998766554443
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.20 E-value=0.0012 Score=51.73 Aligned_cols=190 Identities=13% Similarity=0.115 Sum_probs=106.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCC-Ce-EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK 105 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 105 (247)
+.+..+.+.+++..++++ .+|.| |...+ ++ ...........+..+.+.+++..++++...+..+-.|- .+....
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~ 197 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWE 197 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCE
T ss_pred CCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCcee
Confidence 346677776666655554 45544 22222 32 22333344456889999999887776654444443332 122111
Q ss_pred EE-ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC----CCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393 106 TL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180 (247)
Q Consensus 106 ~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 180 (247)
.+ ......+..+.+.+++.+++. +.+|.+++.+...++....+.. ....+..+.+.+++.+++++. +|.+ ++
T Consensus 198 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~ 274 (327)
T 2xbg_A 198 PHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LC 274 (327)
T ss_dssp EEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EE
T ss_pred ECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EE
Confidence 11 223455777888888876654 4567777664222443333221 123578889998888777655 6655 33
Q ss_pred eCCCceeeeeeccC--CCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393 181 DTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225 (247)
Q Consensus 181 d~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 225 (247)
..+.++.-...... ....+..+.|.+++ .+++++.+|.|.-++.
T Consensus 275 S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 275 SQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp ESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred eCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 44444433333211 12346677787554 4667777898887764
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.15 E-value=0.0015 Score=50.99 Aligned_cols=163 Identities=6% Similarity=-0.052 Sum_probs=97.6
Q ss_pred CeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc--CCCeEEEEECCCceEEE
Q psy4393 29 AVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS--DDKTLKIWELSSGKCLK 105 (247)
Q Consensus 29 ~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~ 105 (247)
....+++.+.+. ++++-...+.|.+++.........+.........+++.|.+..|+.+. ..+.|...++.......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 445678876444 444444567888888754433333333444578899998766665554 35788888876433222
Q ss_pred EEecCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393 106 TLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 184 (247)
Q Consensus 106 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 184 (247)
.+...-..-..+++++++..|+.+ ...+.|..+|+..................+++.. +.++.+-...+.|..+|..+
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence 222333445789999866666554 4567899999864322222222233456677753 34455555678899999877
Q ss_pred ceeeeeec
Q psy4393 185 GQCLKTLI 192 (247)
Q Consensus 185 ~~~~~~~~ 192 (247)
++....+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 76554443
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.12 E-value=0.0031 Score=53.89 Aligned_cols=203 Identities=6% Similarity=-0.014 Sum_probs=116.5
Q ss_pred CCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCeE-EEEEecccCCeEEEEECCCCCE-EEEEcCCCeEEEEECCCceE
Q psy4393 27 TKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKIWELSSGKC 103 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~ 103 (247)
.+....++|++.+..|+.+. ..+.|..++...... ...+.........+++.+.+.. +++-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 44577899998766665544 457788887754422 2233333346788999986554 45556678999999875433
Q ss_pred EEEEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEE
Q psy4393 104 LKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIW 180 (247)
Q Consensus 104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~ 180 (247)
...+.........++++|.+..|+.... .+.|...++............-.....+++++++..|+.+ ...+.|..+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 2222233334567889887655555443 3566666765332222222223456889999876655554 456789999
Q ss_pred eCCCceeeeeecc-CCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEE
Q psy4393 181 DTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAII 233 (247)
Q Consensus 181 d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~ 233 (247)
|+..... ..+.. ....+ ..+++.++ .|+.+. ..+.|...|..+++...+
T Consensus 199 ~~dG~~~-~~~~~~~~~~P-~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 199 NLDGTNR-QAVVKGSLPHP-FALTLFED--ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp SSSCCEE-C---------C-CCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred cCCCCcc-EEEEeCCCCCc-eEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence 8875432 22222 11112 34666655 555554 567899999876654333
No 292
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.10 E-value=0.00088 Score=57.65 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=107.4
Q ss_pred eEEEEECCCCCEEEEEeC-CCeEEEEecCCCeEEEEEecccC-CeEEEEECCCCCEEEEEc-CC-----CeEEEEECCCc
Q psy4393 30 VSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSRLLVSGS-DD-----KTLKIWELSSG 101 (247)
Q Consensus 30 v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~d-----~~i~v~d~~~~ 101 (247)
..++++..++++++.|+. +..+.+||..+......-.-... .-...+..++++.++.|+ .+ ..+.+||..+.
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 345678889998888874 45899999877654432111111 123455667899888888 34 46889998775
Q ss_pred eEEEE-------------------------EecCCc---------------------------------------cEEEE
Q psy4393 102 KCLKT-------------------------LKGHSN---------------------------------------YVFCC 117 (247)
Q Consensus 102 ~~~~~-------------------------~~~~~~---------------------------------------~v~~~ 117 (247)
+.... +.+..+ .-.++
T Consensus 325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 43221 000000 00111
Q ss_pred EEc-CCCCEEEEeeCCC-----------CEEEEECCCCeEEEee--cCCCCC-eEEEEECCCCCEEEEecCC--------
Q psy4393 118 NFN-PQSNLIVSGSFDE-----------SVRIWDVRTGKCLKTL--PAHSDP-VSAVHFNRDGSLIVSSSYD-------- 174 (247)
Q Consensus 118 ~~~-~~~~~l~~~~~d~-----------~i~v~d~~~~~~~~~~--~~~~~~-i~~~~~~~~~~~l~~~~~d-------- 174 (247)
.+. .++++++.|+.++ .+.+||..+.+-.... ...... -.++...|++++++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 121 2566777777532 5777787765433222 111111 2345667899999998854
Q ss_pred ---CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEc
Q psy4393 175 ---GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATL 216 (247)
Q Consensus 175 ---g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~ 216 (247)
..+.+||..+.+....-.... ........+.|+|+.++.|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 468899988765432111111 111234456799999999884
No 293
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.07 E-value=0.0024 Score=50.54 Aligned_cols=194 Identities=12% Similarity=0.166 Sum_probs=111.2
Q ss_pred CeEEEEECCCCCEEEEEe------------CCCeEEEEecCC--CeEE-EEEec-----ccCCeEEEEECC--CCC-EE-
Q psy4393 29 AVSSVKFSPNGEWLASSS------------ADKLIKIWGAYD--GKFE-KTISG-----HKLGISDVAWSS--DSR-LL- 84 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~~------------~dg~v~iw~~~~--~~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l- 84 (247)
..-.+...|+|..+++++ .+|.|.++|..+ .+.. ..+.+ .......+.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 445667888886655552 689999999863 2222 12322 234566777755 454 34
Q ss_pred EEEcC--CCeEEEEECCCc--e--EEEEEecC-CccEEEEEEcCCCCEEEEee-----------------CCCCEEEEEC
Q psy4393 85 VSGSD--DKTLKIWELSSG--K--CLKTLKGH-SNYVFCCNFNPQSNLIVSGS-----------------FDESVRIWDV 140 (247)
Q Consensus 85 ~~~~~--d~~i~v~d~~~~--~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~v~d~ 140 (247)
++-.. +..+.+|++... . .+..+.+. -.....+.+.++|.+.++.. ..|.+.-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 467778776543 2 22223222 23467888889988777643 1234555554
Q ss_pred CCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeCCC-ceeee-eeccCCCCCeEEEEECC-CCCEEEEEEc
Q psy4393 141 RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTAS-GQCLK-TLIDDDNPPVSFVKFSP-NGKYILAATL 216 (247)
Q Consensus 141 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~-~~~~~-~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 216 (247)
++ +..+...-...+.++|+||++.|+.+ +..+.|..|++.. ++... ..+ ........+++++ +|.+.+++..
T Consensus 211 --~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 --ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp --TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred --Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 32 22222222345789999999877665 4568899999863 32211 112 1223446789999 5988777764
Q ss_pred C-CeEEEEECC
Q psy4393 217 D-NTLKLWDSK 226 (247)
Q Consensus 217 d-g~i~vwd~~ 226 (247)
+ ++|..|+..
T Consensus 287 ~g~~v~~~~P~ 297 (355)
T 3sre_A 287 NGMRIFFYDAE 297 (355)
T ss_dssp CHHHHHSCCTT
T ss_pred CceEEEEECCC
Confidence 4 356666655
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.98 E-value=0.0063 Score=52.07 Aligned_cols=203 Identities=9% Similarity=-0.018 Sum_probs=123.6
Q ss_pred CCeEEEEECCCCCEEEE-EeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEE
Q psy4393 28 KAVSSVKFSPNGEWLAS-SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLK 105 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~ 105 (247)
..+..++|++.+..|+. -..++.|..++.........+.........+++.+.+..| .+-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 45778999987666554 4456888888876544444443333346778888765544 555567889999987543322
Q ss_pred EEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeC
Q psy4393 106 TLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT 182 (247)
Q Consensus 106 ~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~ 182 (247)
.+.........++++|....|+.... .+.|...++..... ..+...-.....+++++++..|+.+ ...+.|..+|+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 23233345678999986555555442 45677777754332 2222233456889999976666555 45678999998
Q ss_pred CCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEc
Q psy4393 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 235 (247)
..... ..+..... .-..+++.. ..|+.+. ..+.|...|..+++...++.
T Consensus 196 dG~~~-~v~~~~l~-~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 196 LGLNR-EVIADDLP-HPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp TSCSC-EEEEECCS-CEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCce-EEeeccCC-CceEEEEEC--CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 76433 22222222 234566654 3555554 57899999977665444433
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0057 Score=50.51 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=91.6
Q ss_pred eEEEEECC-CCCEEEEEeC-CCeEEEEecCCCeEEEEEecc---cCCeEEEEE-------CCCCCEEEEEcCCC------
Q psy4393 30 VSSVKFSP-NGEWLASSSA-DKLIKIWGAYDGKFEKTISGH---KLGISDVAW-------SSDSRLLVSGSDDK------ 91 (247)
Q Consensus 30 v~~~~~s~-~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~------ 91 (247)
...++|+| ++..|+.+.. .+.|++.|..++......... ......++| +++++.++.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 56889998 3555555443 467888888776665544332 124788999 99999666665543
Q ss_pred -eEEEEECCC-ceEE-----EEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECC-------CCeE-----------
Q psy4393 92 -TLKIWELSS-GKCL-----KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVR-------TGKC----------- 145 (247)
Q Consensus 92 -~i~v~d~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~-------~~~~----------- 145 (247)
.+.+++... +... ..+.... ....++.+| ++.++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 255665333 1211 1222111 234567888 55666666677889999987 4442
Q ss_pred EEe-ecC-CCCCeEEEEECCCCCEEEE-ecCCCeEEEEeC
Q psy4393 146 LKT-LPA-HSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDT 182 (247)
Q Consensus 146 ~~~-~~~-~~~~i~~~~~~~~~~~l~~-~~~dg~i~v~d~ 182 (247)
... +.. .......++++|++..|+. -+....|+.++.
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 111 111 1234578999999995444 455678888554
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.88 E-value=0.00012 Score=63.41 Aligned_cols=185 Identities=7% Similarity=-0.033 Sum_probs=105.2
Q ss_pred CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEE-cCCCeEEEEECCC----ceEEEEEecCCccEEEEEEcCC
Q psy4393 48 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG-SDDKTLKIWELSS----GKCLKTLKGHSNYVFCCNFNPQ 122 (247)
Q Consensus 48 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~----~~~~~~~~~~~~~v~~~~~~~~ 122 (247)
.+.|+..+.........+.. ...+..++|.+.+..|+.+ ...+.|+.+++.. ......+.........+++++.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35677777765544333322 2346678899876666555 4467888888875 2211112111122345677754
Q ss_pred -CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC--CCeEEEEeCCCceeeeeeccCCCCCe
Q psy4393 123 -SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPV 199 (247)
Q Consensus 123 -~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~v 199 (247)
++++++-...+.|.++++........+.........++++|.+.+|+.+.. .+.|..+++.... ...+.......-
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~P 542 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP 542 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCc
Confidence 445555556778999998755433333322234467889987665555443 2677777765432 222222222223
Q ss_pred EEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEE
Q psy4393 200 SFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 200 ~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~ 234 (247)
..|+|+|++..|+.+. ..++|.++|.+......+.
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~ 578 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 578 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence 5689999877776665 4579999998765444443
No 297
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.87 E-value=0.0022 Score=49.26 Aligned_cols=184 Identities=10% Similarity=0.135 Sum_probs=95.9
Q ss_pred CCCEEEEEeCC-----CeEEEEecCCCe---EEEEEe--cccCCeEEEEECCCCCEEEEEcCC-----CeEEEEECCCce
Q psy4393 38 NGEWLASSSAD-----KLIKIWGAYDGK---FEKTIS--GHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGK 102 (247)
Q Consensus 38 ~~~~l~~~~~d-----g~v~iw~~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~ 102 (247)
++..++.|+.+ ..+.+||..+.. ....-. ........... +++.++.|+.+ ..+.+||..+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 45666666654 358888887655 333211 11111122222 45666666543 368889988765
Q ss_pred EEEE--EecCCccEEEEEEcCCCCEEEEeeCC-----CCEEEEECCCCeEEEe--ecCCCCCeEEEEECCCCCEEEEecC
Q psy4393 103 CLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY 173 (247)
Q Consensus 103 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~ 173 (247)
.... +......-..+. .++.+++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.|+.
T Consensus 140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~ 215 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGF 215 (301)
T ss_dssp EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCC
Confidence 3322 111111111222 256777777754 3588999887653221 2111111222233 5677777776
Q ss_pred C-----CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393 174 D-----GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT 229 (247)
Q Consensus 174 d-----g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~ 229 (247)
+ ..+.+||+.+.+....-.... ......+.+ +++.++.|+.+ +.+.+||.++.+
T Consensus 216 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 216 DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 4 468899998876443211111 111122222 56777777755 468889987653
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.84 E-value=0.011 Score=50.57 Aligned_cols=204 Identities=9% Similarity=0.031 Sum_probs=120.4
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCeEEEEEec------ccCCeEEEEECCCCCEE-EEEcCCCeEEEEECC
Q psy4393 28 KAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISG------HKLGISDVAWSSDSRLL-VSGSDDKTLKIWELS 99 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~ 99 (247)
..+.+++|++....|+-+. ..+.|+.++.........+.. .......+++...++.| .+-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 4577899988666665444 457787777654333333322 23357889998876655 566677899999986
Q ss_pred CceEEEEE-ecCCccEEEEEEcCC-CCEEEEeeCCC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec-CC
Q psy4393 100 SGKCLKTL-KGHSNYVFCCNFNPQ-SNLIVSGSFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YD 174 (247)
Q Consensus 100 ~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d 174 (247)
++....+ .........++++|. +.++.+-.... .|...++............-.....+++++....|+.+. ..
T Consensus 420 -G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~ 498 (628)
T 4a0p_A 420 -GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDL 498 (628)
T ss_dssp -SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred -CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC
Confidence 4433333 334456788999994 44444433222 466666643322222222234568899999877666554 45
Q ss_pred CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEc
Q psy4393 175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICS 235 (247)
Q Consensus 175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 235 (247)
+.|..+|+.... .+.+..........+++.. ..|+.+. ..+.|...|..++.....++
T Consensus 499 ~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 499 RRIESSDLSGAN-RIVLEDSNILQPVGLTVFE--NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp TEEEEEETTSCS-CEEEECSSCSCEEEEEEET--TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred CEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC--CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 789999986433 3333322222335566654 3555554 55789889987665444443
No 299
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.83 E-value=0.003 Score=48.68 Aligned_cols=184 Identities=7% Similarity=0.069 Sum_probs=96.2
Q ss_pred CCCEEEEEeCC----CeEEEEecCCCeEEEEEecc--cCCeEEEEECCCCCEEEEEcCC------CeEEEEECCCceEEE
Q psy4393 38 NGEWLASSSAD----KLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLLVSGSDD------KTLKIWELSSGKCLK 105 (247)
Q Consensus 38 ~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~ 105 (247)
++..++.|+.+ ..+.+||..+......-... ........+ +++.++.|+.+ ..+.+||..+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 45566666644 56888888776554332111 111122222 56666777654 358889988765332
Q ss_pred E--EecCCccEEEEEEcCCCCEEEEeeC---------CCCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEec
Q psy4393 106 T--LKGHSNYVFCCNFNPQSNLIVSGSF---------DESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSS 172 (247)
Q Consensus 106 ~--~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~ 172 (247)
. +......-..+. .++.+++.|+. -..+.+||+.+.+-.. .+......-..+.+ ++++++.|+
T Consensus 133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG 208 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGG 208 (306)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeC
Confidence 2 111111111122 25566777654 3458899998764222 12111111222222 566777776
Q ss_pred CC-----CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393 173 YD-----GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT 229 (247)
Q Consensus 173 ~d-----g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~ 229 (247)
.+ ..+.+||+.+.+....-.... ......+.+ ++++++.|+.+ +.+.+||..+.+
T Consensus 209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 54 358899998865433211111 111222333 66777888754 578999987653
No 300
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.80 E-value=0.0024 Score=49.09 Aligned_cols=184 Identities=10% Similarity=0.154 Sum_probs=94.3
Q ss_pred CCCEEEEEeCC-----CeEEEEecCCCeEEEEEec--ccCCeEEEEECCCCCEEEEEcCCC-----eEEEEECCCceEEE
Q psy4393 38 NGEWLASSSAD-----KLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDSRLLVSGSDDK-----TLKIWELSSGKCLK 105 (247)
Q Consensus 38 ~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~ 105 (247)
++..++.|+.+ ..+.+||..+.+....-.. .........+ ++..++.|+.++ .+.+||+.+.+...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 45566666644 3577888776654332111 1111122222 456666666543 57788988765332
Q ss_pred E--EecCCccEEEEEEcCCCCEEEEeeCC-------CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393 106 T--LKGHSNYVFCCNFNPQSNLIVSGSFD-------ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYD 174 (247)
Q Consensus 106 ~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d 174 (247)
. +.........+. .++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+ ++.+++.|+.+
T Consensus 139 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 214 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHD 214 (302)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred cCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCC
Confidence 2 111111111122 245677777643 358899988765322 22211112222222 56777777764
Q ss_pred -----CeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcCC-----eEEEEECCCcc
Q psy4393 175 -----GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLDN-----TLKLWDSKVVT 229 (247)
Q Consensus 175 -----g~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~ 229 (247)
..+.+||+.+.+....-..... .....+. .+++.++.|+.++ .+.+||..+.+
T Consensus 215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 3688999988764332111111 1112222 2567777777553 58999987654
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.76 E-value=0.0046 Score=51.09 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=92.6
Q ss_pred eEEEEECCC-CCEE-EEEcCCCeEEEEECCCceEEEEEecC---CccEEEEEE-------cCCCCEEEEeeCCC------
Q psy4393 72 ISDVAWSSD-SRLL-VSGSDDKTLKIWELSSGKCLKTLKGH---SNYVFCCNF-------NPQSNLIVSGSFDE------ 133 (247)
Q Consensus 72 v~~~~~~~~-~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~------ 133 (247)
...|+|+|. +..| ++....+.|++.|.+++......... ......++| ++++..|+.....+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 457889983 4444 44444567889998877655433322 224778999 99998666555443
Q ss_pred -CEEEEECCC-CeEE-----EeecCCCCCeEEEEECCC-CCEEEEecCCCeEEEEeCC-------Ccee-----------
Q psy4393 134 -SVRIWDVRT-GKCL-----KTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTA-------SGQC----------- 187 (247)
Q Consensus 134 -~i~v~d~~~-~~~~-----~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~-------~~~~----------- 187 (247)
.+.+++... +... ..+.... ....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266665333 1111 1111111 2245788994 5556666778899999987 4443
Q ss_pred eeee-ccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393 188 LKTL-IDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSK 226 (247)
Q Consensus 188 ~~~~-~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 226 (247)
...+ .......-..++|+|+|++|+.+. ...+|+.+|.+
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 1121 122223346799999999766665 45789996654
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.76 E-value=0.0075 Score=47.35 Aligned_cols=141 Identities=11% Similarity=0.251 Sum_probs=91.3
Q ss_pred CCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCC----CC---EEEEee-C--CCCEEEEEC--CCCeEEE
Q psy4393 80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ----SN---LIVSGS-F--DESVRIWDV--RTGKCLK 147 (247)
Q Consensus 80 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--d~~i~v~d~--~~~~~~~ 147 (247)
...+++...+.+-+.+||+ +++.+..+.. +.+..+..-|+ +. ++++.. . +..|.+|++ .++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4566777777889999999 7887777653 34555554442 22 223333 3 568999977 3333 44
Q ss_pred eecC-------CCCCeEEEEE--CCC-CC-EEEEecCCCeEEEEeCC---C----ceeeeeeccCCCCCeEEEEECCCCC
Q psy4393 148 TLPA-------HSDPVSAVHF--NRD-GS-LIVSSSYDGLCRIWDTA---S----GQCLKTLIDDDNPPVSFVKFSPNGK 209 (247)
Q Consensus 148 ~~~~-------~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~v~d~~---~----~~~~~~~~~~~~~~v~~~~~s~~~~ 209 (247)
.+.. ....+..+++ +|. +. ++++...+|.+..|++. . .+.++++.. .+.+..+..++...
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g 192 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYG 192 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCC
Confidence 4421 1133455666 674 44 67778888999888873 2 233444433 34678899999999
Q ss_pred EEEEEEcCCeEEEEECC
Q psy4393 210 YILAATLDNTLKLWDSK 226 (247)
Q Consensus 210 ~l~~~~~dg~i~vwd~~ 226 (247)
.|+.+-++.-|..+|..
T Consensus 193 ~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEEETTTEEEEEECS
T ss_pred eEEEecccceEEEEeCC
Confidence 99999999888888855
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.63 E-value=0.013 Score=47.15 Aligned_cols=145 Identities=15% Similarity=0.165 Sum_probs=92.1
Q ss_pred CCCCCEEEEEcCCCeEEEEECCCceEEEEEecC----CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe---------
Q psy4393 78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK--------- 144 (247)
Q Consensus 78 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--------- 144 (247)
+.+|..++.+ .++.||..++.....-+.++.. -..+..+..+|+|.++|..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3445555544 2467777777644333344432 22467789999999999875 4578999887322
Q ss_pred ---EEEeecC------CCCCeEEEEECCC---CCEEEEecCCCeEEEEeCCCceeee-eec--------cCCCCCeEEEE
Q psy4393 145 ---CLKTLPA------HSDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCLK-TLI--------DDDNPPVSFVK 203 (247)
Q Consensus 145 ---~~~~~~~------~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~-~~~--------~~~~~~v~~~~ 203 (247)
..+.+.. ...+|..+.|+|- +..|++-..|+.|++||+....... .+. ......+..++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 0112221 2467999999995 4578888899999999997522111 111 01124577889
Q ss_pred ECCCCCEEEEEE--cCCeEEEEE
Q psy4393 204 FSPNGKYILAAT--LDNTLKLWD 224 (247)
Q Consensus 204 ~s~~~~~l~~~~--~dg~i~vwd 224 (247)
|..++-.|+..+ .+|.|.-.-
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEES
T ss_pred EcCCCcEEEEEecCCCCCEEEEC
Confidence 999887777755 667776554
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.62 E-value=0.025 Score=48.31 Aligned_cols=199 Identities=6% Similarity=0.007 Sum_probs=113.4
Q ss_pred CCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCCceEEE
Q psy4393 28 KAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSSGKCLK 105 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~ 105 (247)
..+.+++|++.+..|+.+ ...+.|+.++.........+.........+++.+.+ +.+.+-...+.|.+.++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 345678888755555443 346778878775544333343333456788888644 455565667899999987543322
Q ss_pred EEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeC
Q psy4393 106 TLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT 182 (247)
Q Consensus 106 ~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~ 182 (247)
.+...-.....++++|....|+.... ...|...++............-.....+++++++..|+.+ +..+.|..+++
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 22333445678899997445544432 3566666664322211222223456789999876666655 44578888988
Q ss_pred CCceeeeeecc-CCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcce
Q psy4393 183 ASGQCLKTLID-DDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTP 230 (247)
Q Consensus 183 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~ 230 (247)
..... +.+.. ....+ ..+++..+ +|+.+. ..+.|...|..++..
T Consensus 509 dG~~~-~~~~~~~l~~P-~glav~~~--~ly~tD~~~~~I~~~~k~~g~~ 554 (619)
T 3s94_A 509 DGTGR-RVLVEDKIPHI-FGFTLLGD--YVYWTDWQRRSIERVHKRSAER 554 (619)
T ss_dssp SSCCC-EEEEECCCCSS-CCEEEETT--EEEEECTTSSCEEEEESSSCCE
T ss_pred CCCce-EEEeccCCCCc-EEEEEECC--EEEEeecCCCeEEEEEcCCCce
Confidence 65432 22221 11112 23444433 565555 346787777776643
No 305
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.60 E-value=0.014 Score=45.18 Aligned_cols=188 Identities=10% Similarity=0.062 Sum_probs=93.0
Q ss_pred CCCCCEEEEEeC----C-------CeEEEEecCCCeEEEEEecc--cCCeEEEEECCCCCEEEEEcCC--------CeEE
Q psy4393 36 SPNGEWLASSSA----D-------KLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLLVSGSDD--------KTLK 94 (247)
Q Consensus 36 s~~~~~l~~~~~----d-------g~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d--------~~i~ 94 (247)
..++..++.|+. + ..+..||..+.+....-... ........+ ++..++.|+.+ ..+.
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence 346677666663 1 12677887766543221100 111111222 45566666632 3588
Q ss_pred EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-C-----CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCC
Q psy4393 95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-D-----ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGS 166 (247)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~ 166 (247)
+||..+.+-...-..............++.+++.|+. + ..+.+||+.+.+-.. .+......-.++.+ +++
T Consensus 121 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 198 (315)
T 4asc_A 121 CYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGR 198 (315)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred EECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCE
Confidence 8998876532211111111111111235567777776 2 358899988764221 12111111222222 567
Q ss_pred EEEEecCCC-----eEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC--------------CeEEEEECC
Q psy4393 167 LIVSSSYDG-----LCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD--------------NTLKLWDSK 226 (247)
Q Consensus 167 ~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d--------------g~i~vwd~~ 226 (247)
+++.|+.++ .+.+||+.+.+....-.... ......+.+ ++++++.|+.+ +.+.+||..
T Consensus 199 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 276 (315)
T 4asc_A 199 IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEE 276 (315)
T ss_dssp EEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred EEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCC
Confidence 777777654 58889998875443211111 111122222 56777777753 247788887
Q ss_pred Ccc
Q psy4393 227 VVT 229 (247)
Q Consensus 227 ~~~ 229 (247)
+.+
T Consensus 277 ~~~ 279 (315)
T 4asc_A 277 EKK 279 (315)
T ss_dssp TTE
T ss_pred CCh
Confidence 653
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.54 E-value=0.012 Score=45.34 Aligned_cols=180 Identities=13% Similarity=0.181 Sum_probs=91.5
Q ss_pred EEEEEeC--CCeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCC----CeEEEEECCCceEEEEEe--cC
Q psy4393 41 WLASSSA--DKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD----KTLKIWELSSGKCLKTLK--GH 110 (247)
Q Consensus 41 ~l~~~~~--dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~--~~ 110 (247)
+++.|+. ...+..||..+.+....-. .......... .++..++.|+.+ ..+.+||..+.+....-. ..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4445553 3568888887765443211 1111112222 245666666644 578889988775432211 11
Q ss_pred CccEEEEEEcCCCCEEEEeeCC------CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecC---------
Q psy4393 111 SNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSY--------- 173 (247)
Q Consensus 111 ~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~--------- 173 (247)
...-..+. -++.+++.|+.+ ..+.+||+.+.+-.. .+......-..+.+ ++++++.|+.
T Consensus 92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEE
T ss_pred ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccc
Confidence 11111222 256677777765 358899988765322 12111111122222 5666676664
Q ss_pred CCeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCc
Q psy4393 174 DGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVV 228 (247)
Q Consensus 174 dg~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~ 228 (247)
-..+.+||+.+.+....-..... ..-..+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 34588999988754332111111 11122222 56677776643 46888887664
No 307
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.53 E-value=0.007 Score=46.43 Aligned_cols=184 Identities=13% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCCEEEEEe-CC-----CeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCC-----CeEEEEECCCce--
Q psy4393 38 NGEWLASSS-AD-----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGK-- 102 (247)
Q Consensus 38 ~~~~l~~~~-~d-----g~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~-- 102 (247)
++..++.|+ .+ ..+..||..+.+....-. .......... .++..++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344555555 22 367888887665433211 1111111222 245666666644 368899988765
Q ss_pred -EEEE--EecCCccEEEEEEcCCCCEEEEeeCCC-----CEEEEECCCCeE--EEeecCCCCCeEEEEECCCCCEEEEec
Q psy4393 103 -CLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSS 172 (247)
Q Consensus 103 -~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~ 172 (247)
.... +......-..+.. ++.+++.|+.++ .+.+||+.+.+- +..+......-.++.+ ++++++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 3221 1111111112222 567777776543 588899877652 2222222222222222 567777777
Q ss_pred CC-----CeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393 173 YD-----GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT 229 (247)
Q Consensus 173 ~d-----g~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~ 229 (247)
.+ ..+.+||+.+.+....-..... .....+.+ +++.++.|+.+ +.+.+||..+.+
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 54 3588999888764432111111 11122222 56777777754 468999987654
No 308
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00077 Score=52.89 Aligned_cols=113 Identities=9% Similarity=0.094 Sum_probs=72.8
Q ss_pred CEEEEEeCCCeEEEEecCCCeEEEEEeccc-CCeEEEEE--CC-CCCEEEEE-cCCCeEEEEECCCceEEEEEecC----
Q psy4393 40 EWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAW--SS-DSRLLVSG-SDDKTLKIWELSSGKCLKTLKGH---- 110 (247)
Q Consensus 40 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~--~~-~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~---- 110 (247)
..++.++.||.|.-+|..+|+....+.... .++....- .+ ++..++.. ..||.+..++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 467788999999999999999998887541 22222110 01 22334343 58999999999887544333211
Q ss_pred CccEEE---EEE-c----CCCCEEEEeeCCCCEEEEECCCCeEEEeecCC
Q psy4393 111 SNYVFC---CNF-N----PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 152 (247)
Q Consensus 111 ~~~v~~---~~~-~----~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 152 (247)
.+++.. ... . -.+..+++|+.+|.+...|+++|+.+..+...
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 111211 000 0 13567889999999999999999998887643
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.41 E-value=0.013 Score=44.90 Aligned_cols=182 Identities=9% Similarity=0.171 Sum_probs=90.7
Q ss_pred CEEEEEeCC----CeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCC-----CeEEEEECCCceEEEEE-
Q psy4393 40 EWLASSSAD----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGKCLKTL- 107 (247)
Q Consensus 40 ~~l~~~~~d----g~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~- 107 (247)
..++.|+.+ ..+..||..+......-. .....-..+.. ++..++.|+.+ ..+.+||..+.+....-
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 344455433 357788887665433211 11111111222 55666666644 35888998876533221
Q ss_pred -ecCCccEEEEEEcCCCCEEEEeeCCC-----CEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecCC-----
Q psy4393 108 -KGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYD----- 174 (247)
Q Consensus 108 -~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d----- 174 (247)
......-..+. .++.+++.|+.++ .+.+||+.+.+-.. .+........++.+ ++++++.|+.+
T Consensus 95 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 95 MRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTE
T ss_pred CCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCc
Confidence 11111111222 2566777777554 47788987765322 12211111222222 56667777643
Q ss_pred --CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393 175 --GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT 229 (247)
Q Consensus 175 --g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~ 229 (247)
..+.+||+.+.+....-.... ......+.+ ++++++.|+.+ +.+.+||..+.+
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 358899998776433211111 111122222 56777777754 468899987643
No 310
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.37 E-value=0.022 Score=41.68 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=80.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe------EEEEEec-ccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------FEKTISG-HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS 100 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 100 (247)
..+..++|+|+|.+.++ .+|.+.-.+..+.. ....+-. .-....++.|.|+|.+.++ .||.|.-++..+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 47889999999986665 67877666653311 1122210 1111467889999998777 558887777533
Q ss_pred ce-------EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE------EEee-cCCCCCeEEEEECCCCC
Q psy4393 101 GK-------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC------LKTL-PAHSDPVSAVHFNRDGS 166 (247)
Q Consensus 101 ~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~-~~~~~~i~~~~~~~~~~ 166 (247)
.. ..+.-...-..+..+.+.|+|.+.+.. ++.++-....++.. ...+ ......-+-+.|.+++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 21 111112223457889999999988776 66654332221110 0111 11222334566888887
Q ss_pred EEEEecCCCeE
Q psy4393 167 LIVSSSYDGLC 177 (247)
Q Consensus 167 ~l~~~~~dg~i 177 (247)
+.++. +|.+
T Consensus 195 l~~v~--~g~~ 203 (236)
T 1tl2_A 195 LFGVQ--GGKF 203 (236)
T ss_dssp EEEEE--TTEE
T ss_pred EEEEe--CCeE
Confidence 66655 6643
No 311
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.36 E-value=0.018 Score=44.32 Aligned_cols=184 Identities=11% Similarity=0.149 Sum_probs=94.0
Q ss_pred CCCEEEEEeC----C-----CeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCC-----CeEEEEECCCc
Q psy4393 38 NGEWLASSSA----D-----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSG 101 (247)
Q Consensus 38 ~~~~l~~~~~----d-----g~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~ 101 (247)
++..++.|+. + ..+.+||..+......-. ..........+ +++.++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4555566654 2 357788877665433211 11111122222 55666666533 35788998876
Q ss_pred eEEEE--EecCCccEEEEEEcCCCCEEEEeeCC-----CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEec
Q psy4393 102 KCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSS 172 (247)
Q Consensus 102 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~ 172 (247)
+.... +......-..+.+ ++.+++.|+.+ ..+.+||+.+.+-.. .+........++.+ ++.+++.|+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 223 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG 223 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence 53321 1111111112222 56777777654 358899988764221 11111111222333 567777777
Q ss_pred CC-----CeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393 173 YD-----GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT 229 (247)
Q Consensus 173 ~d-----g~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~ 229 (247)
.+ ..+.+||+.+.+....-..... .....+. -++++++.|+.+ ..+.+||..+.+
T Consensus 224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 64 4688999988764432111111 1112222 256777777743 468889987654
No 312
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.36 E-value=0.011 Score=45.60 Aligned_cols=184 Identities=10% Similarity=0.116 Sum_probs=93.5
Q ss_pred CCCEEEEEeCC----CeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcC----C-----CeEEEEECCCce
Q psy4393 38 NGEWLASSSAD----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSD----D-----KTLKIWELSSGK 102 (247)
Q Consensus 38 ~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~----d-----~~i~v~d~~~~~ 102 (247)
++..++.|+.+ ..+.+||..+.+....-. ........... ++..++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 45566666532 367888887765443211 11111111222 4566666654 2 357888988765
Q ss_pred EEEE--EecCCccEEEEEEcCCCCEEEEeeCC-----CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecC
Q psy4393 103 CLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSY 173 (247)
Q Consensus 103 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~ 173 (247)
.... +......-..+.+ ++.+++.|+.+ ..+.+||+.+.+-.. .+......-.++.+ ++.+++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 3221 1111111112222 56677777644 358889988765322 11111111222233 5677777775
Q ss_pred C-----CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393 174 D-----GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT 229 (247)
Q Consensus 174 d-----g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~ 229 (247)
+ ..+.+||+.+.+....-.... ...-..+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 4 358899988765432211111 111122223 56777777654 568899976643
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.26 E-value=0.046 Score=43.13 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=61.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE--e---cccCCeEEEEECCC---CCEEEEEcC-C-----
Q psy4393 25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--S---GHKLGISDVAWSSD---SRLLVSGSD-D----- 90 (247)
Q Consensus 25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--~---~~~~~v~~~~~~~~---~~~l~~~~~-d----- 90 (247)
..-.....++|.|+|+++++ ..+|.|.+++ ++...... . ........++++|+ +..|..+.. .
T Consensus 28 ~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 28 GGLEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp CCCSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred CCCCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence 33455679999999985554 5679999988 44422111 1 12346789999998 455544332 2
Q ss_pred CeEEEEECCCce-----EE-EEEe---cCCccEEEEEEcCCCCEEEEee
Q psy4393 91 KTLKIWELSSGK-----CL-KTLK---GHSNYVFCCNFNPQSNLIVSGS 130 (247)
Q Consensus 91 ~~i~v~d~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~ 130 (247)
..|..++...+. .+ ..+. ........+.|.|+|.+.++.+
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 567777776431 11 1122 1111234688999998777644
No 314
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.26 E-value=0.041 Score=42.50 Aligned_cols=188 Identities=7% Similarity=0.071 Sum_probs=91.4
Q ss_pred CCCCCEEEEEeC----CC-------eEEEEecCCCeEEEEE--ecccCCeEEEEECCCCCEEEEEcCC-------CeEEE
Q psy4393 36 SPNGEWLASSSA----DK-------LIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSDD-------KTLKI 95 (247)
Q Consensus 36 s~~~~~l~~~~~----dg-------~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~v 95 (247)
..++..++.|+. ++ .+..||..+.+....- ...........+ ++..++.|+.+ ..+.+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence 446666667763 11 1667787665543221 111111112222 45666666643 25778
Q ss_pred EECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC------CCCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCE
Q psy4393 96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF------DESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSL 167 (247)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~ 167 (247)
||..+.+-...-..............++.+++.|+. -..+.+||+.+.+-.. .+........++.+ ++++
T Consensus 132 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 209 (318)
T 2woz_A 132 YDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKI 209 (318)
T ss_dssp EETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred EeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEE
Confidence 898876543221111111111111245667777764 2358899998765222 12211111222222 5677
Q ss_pred EEEecCC-----CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC--------------CeEEEEECCC
Q psy4393 168 IVSSSYD-----GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD--------------NTLKLWDSKV 227 (247)
Q Consensus 168 l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d--------------g~i~vwd~~~ 227 (247)
++.|+.+ ..+.+||+.+.+....-.... ......+. .++++++.|+.+ ..+.+||..+
T Consensus 210 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 210 VIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp EEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred EEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence 7777643 357789988765433211111 11112222 346777777653 4588888876
Q ss_pred cc
Q psy4393 228 VT 229 (247)
Q Consensus 228 ~~ 229 (247)
.+
T Consensus 288 ~~ 289 (318)
T 2woz_A 288 KE 289 (318)
T ss_dssp TE
T ss_pred CE
Confidence 53
No 315
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.26 E-value=0.043 Score=42.73 Aligned_cols=184 Identities=14% Similarity=0.090 Sum_probs=98.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe---cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL 104 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 104 (247)
..+.++.|++ +..++ ++..+.|.. ....++.-..+. .....+..+.+.+++..++++ .++.+.. ....++.-
T Consensus 80 ~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW 154 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNW 154 (327)
T ss_dssp CEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSE
T ss_pred ccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCC
Confidence 3577888875 44444 455664433 222232211111 122346677776666655555 4554422 22223322
Q ss_pred EEE-ecCCccEEEEEEcCCCCEEEEeeCCCCEE-EEEC--CCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393 105 KTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVR-IWDV--RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180 (247)
Q Consensus 105 ~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~-v~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 180 (247)
..+ ......+..+.+.+++.+++.+. ++.+. -.|- .+.+.+. ......+..+.+.+++.++++ +.+|.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s 230 (327)
T 2xbg_A 155 QALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFS 230 (327)
T ss_dssp EEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEE
T ss_pred EEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEe
Confidence 222 23345678888999888777664 44443 3342 2333332 233456888899999886654 457877766
Q ss_pred eCCCceeeeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEE
Q psy4393 181 DTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLK 221 (247)
Q Consensus 181 d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~ 221 (247)
+...++........ ....+..+++.+++..++++ .+|.|.
T Consensus 231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~ 273 (327)
T 2xbg_A 231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL 273 (327)
T ss_dssp ETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE
T ss_pred cCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE
Confidence 43334333222211 22347888899887766655 467663
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.23 E-value=0.032 Score=40.77 Aligned_cols=143 Identities=11% Similarity=0.001 Sum_probs=80.7
Q ss_pred CCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE------EEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC
Q psy4393 70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC------LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142 (247)
Q Consensus 70 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 142 (247)
..+.+++|+|+|.+.++ .+|.+.-.+..+... ...+-. .-....++-|+|++.+.++ .||.|+-++..+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 46789999999986666 677766556544111 111210 1111356789999988877 568888777533
Q ss_pred CeE-------EEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee-----eeeecc-CCCCCeEEEEECCCCC
Q psy4393 143 GKC-------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLID-DDNPPVSFVKFSPNGK 209 (247)
Q Consensus 143 ~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----~~~~~~-~~~~~v~~~~~s~~~~ 209 (247)
... ...-...-..+..+.+.|+|.+.++. |+.+.-.....+.. ...... ..-.....+.|.+++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 211 11111112457899999999977776 77754332221110 011111 1112345577999987
Q ss_pred EEEEEEcCCeE
Q psy4393 210 YILAATLDNTL 220 (247)
Q Consensus 210 ~l~~~~~dg~i 220 (247)
..++. +|.+
T Consensus 195 l~~v~--~g~~ 203 (236)
T 1tl2_A 195 LFGVQ--GGKF 203 (236)
T ss_dssp EEEEE--TTEE
T ss_pred EEEEe--CCeE
Confidence 66666 6744
No 317
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.09 E-value=0.047 Score=42.12 Aligned_cols=177 Identities=7% Similarity=-0.027 Sum_probs=99.3
Q ss_pred EEECCCCCEEEEEeCC--------------CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----CCCeEE
Q psy4393 33 VKFSPNGEWLASSSAD--------------KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----DDKTLK 94 (247)
Q Consensus 33 ~~~s~~~~~l~~~~~d--------------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~ 94 (247)
--++++|.+|+.+... ..|+..+....+.. .+... . ...|+++++.|+-.. ....|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDPD--P--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEECS--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-EeecC--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3467888888766543 35666666554432 23221 1 235777888887665 334565
Q ss_pred EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC
Q psy4393 95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 173 (247)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 173 (247)
..++.... ...+..+.. ..++++++.|+..+. ...|.+.++..+.....+. +... ..+.|++.+|+-...
T Consensus 133 ~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 133 RIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEG
T ss_pred EEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEc
Confidence 56665433 333433322 345677777775554 5678888887665433332 2222 235688888876554
Q ss_pred C--CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc--CCeEEEEECCCcc
Q psy4393 174 D--GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL--DNTLKLWDSKVVT 229 (247)
Q Consensus 174 d--g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~ 229 (247)
. ..|..-++.... ...+.. ..+ ..|+|++++|+.++. .+.|..-+++...
T Consensus 204 ~~~~~I~~~~ldG~~-~~~Lt~---~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 204 NRDNAIVHVNINNPN-PVVLTE---ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp GGTTEEEEECSSSCC-CEECSC---SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred CCCcEEEEEECCCCC-eEEEeC---CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 3 366666766544 222221 122 347778888876532 3566666665543
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.01 E-value=0.085 Score=41.57 Aligned_cols=183 Identities=13% Similarity=0.127 Sum_probs=94.8
Q ss_pred CCCeEEEEECCC---CCEEEEEeC-C-----CeEEEEecCCCeE---EEEEecc------cCCeEEEEECCCCCEEEEEc
Q psy4393 27 TKAVSSVKFSPN---GEWLASSSA-D-----KLIKIWGAYDGKF---EKTISGH------KLGISDVAWSSDSRLLVSGS 88 (247)
Q Consensus 27 ~~~v~~~~~s~~---~~~l~~~~~-d-----g~v~iw~~~~~~~---~~~~~~~------~~~v~~~~~~~~~~~l~~~~ 88 (247)
......++|+|+ +..|+.+.. . +.|..++...... ...+... ......++|.|+|.++++.+
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 356789999998 555554433 2 5677777654321 1112111 11235789999998776653
Q ss_pred CC-------------CeEEEEECCCc------------eEEEEE-ecCCccEEEEEEcC-CCCEEEEeeCCCC-------
Q psy4393 89 DD-------------KTLKIWELSSG------------KCLKTL-KGHSNYVFCCNFNP-QSNLIVSGSFDES------- 134 (247)
Q Consensus 89 ~d-------------~~i~v~d~~~~------------~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~------- 134 (247)
.. +.|.-++.... .....+ .++. ....++|+| ++.++++-.....
T Consensus 154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~d 232 (352)
T 2ism_A 154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHD 232 (352)
T ss_dssp CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCC
T ss_pred CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence 21 45555555420 000111 1222 245678999 6676665433332
Q ss_pred -EEEEECCCCe------------------EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee------ee
Q psy4393 135 -VRIWDVRTGK------------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC------LK 189 (247)
Q Consensus 135 -i~v~d~~~~~------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~~ 189 (247)
|.+. ..+. ++..+..+ .....++| .+|.++++....+.|...++..... ..
T Consensus 233 ei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~ 308 (352)
T 2ism_A 233 EVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVE 308 (352)
T ss_dssp EEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEe--ccCCcCCCCcccCCCCCCCCcCCeEecCCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchh
Confidence 3332 2221 11122112 23456666 4566666666667777777653321 12
Q ss_pred eeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393 190 TLIDDDNPPVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 190 ~~~~~~~~~v~~~~~s~~~~~l~~~~ 215 (247)
.+.. ....+..+++.|||.++++..
T Consensus 309 ~~~~-~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 309 TALS-GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEE-SSCCEEEEEECTTSCEEEEEC
T ss_pred eecc-cCCCeeEEEECCCCcEEEEEe
Confidence 2222 234578899999998766654
No 319
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.92 E-value=0.041 Score=43.25 Aligned_cols=141 Identities=12% Similarity=-0.060 Sum_probs=63.3
Q ss_pred CeEEEEECCCceEEEEEecCCc-cE-EEEEEcCCCCEEEEeeC------CCCEEEEEC--CCCeE--EEeecCCCCCeEE
Q psy4393 91 KTLKIWELSSGKCLKTLKGHSN-YV-FCCNFNPQSNLIVSGSF------DESVRIWDV--RTGKC--LKTLPAHSDPVSA 158 (247)
Q Consensus 91 ~~i~v~d~~~~~~~~~~~~~~~-~v-~~~~~~~~~~~l~~~~~------d~~i~v~d~--~~~~~--~~~~~~~~~~i~~ 158 (247)
..+.+||..+.+-...-..... .- .++.. -++.+++.|+. ...+..||+ .+.+- +..+.........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 4788999987653322111111 11 12222 24566777664 235777876 33321 1111111111111
Q ss_pred EEECCCCCEEEEecCC----------------------CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc
Q psy4393 159 VHFNRDGSLIVSSSYD----------------------GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 216 (247)
Q Consensus 159 ~~~~~~~~~l~~~~~d----------------------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 216 (247)
.+...++.+++.|+.+ ..+.+||+.+.+....-.... ......+...++++++.|+.
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~ 325 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ-GRAYGVSLPWNNSLLIIGGE 325 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS-CCBSSEEEEETTEEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC-CcccceeEEeCCEEEEEeee
Confidence 1122356677777632 246789988765432211111 11111122346778888885
Q ss_pred CC------eEEEEECCCcceEEE
Q psy4393 217 DN------TLKLWDSKVVTPAII 233 (247)
Q Consensus 217 dg------~i~vwd~~~~~~~~~ 233 (247)
++ .+.+++.++++.+..
T Consensus 326 ~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 326 TAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CGGGCEEEEEEEEEC-CCSCEEE
T ss_pred CCCCCEeeeEEEEEEcCcEeEee
Confidence 42 455667777765543
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.90 E-value=0.12 Score=41.64 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=92.3
Q ss_pred CCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc---cC-CeEEEEECCCCCEEEEEcCCCeEEEEECCCce---------
Q psy4393 36 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---KL-GISDVAWSSDSRLLVSGSDDKTLKIWELSSGK--------- 102 (247)
Q Consensus 36 s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~---~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--------- 102 (247)
..+|..++.+ .++.||.-++.....-+.+... .. .+..+..+|+|+++|..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3456666554 3567777776533323333332 22 577899999999998875 5578888876321
Q ss_pred ---EEEEEec------CCccEEEEEEcCC---CCEEEEeeCCCCEEEEECCCCe--EEEeec---------CCCCCeEEE
Q psy4393 103 ---CLKTLKG------HSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDVRTGK--CLKTLP---------AHSDPVSAV 159 (247)
Q Consensus 103 ---~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~--~~~~~~---------~~~~~i~~~ 159 (247)
..+.+.- ....|..+.|+|- +..+++-..|+.|++||+.... +. .+. .....+.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 1122221 2466999999994 4678888999999999997521 11 221 122468899
Q ss_pred EECCCCCEEEE--ecCCCeEEEEe
Q psy4393 160 HFNRDGSLIVS--SSYDGLCRIWD 181 (247)
Q Consensus 160 ~~~~~~~~l~~--~~~dg~i~v~d 181 (247)
+|..++-.|+. .+..|.|+...
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEES
T ss_pred EEcCCCcEEEEEecCCCCCEEEEC
Confidence 99998876666 44788876553
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.89 E-value=0.096 Score=40.33 Aligned_cols=180 Identities=11% Similarity=0.064 Sum_probs=91.5
Q ss_pred EEEEeCCCeEEEEecCCCeEEEE-EecccCCeEEEEECCCCCEEEEEcC-----C------CeEEEEECCCceEEEEEec
Q psy4393 42 LASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSD-----D------KTLKIWELSSGKCLKTLKG 109 (247)
Q Consensus 42 l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-----d------~~i~v~d~~~~~~~~~~~~ 109 (247)
++.|+ ..+..||..+.+.... +.........-....++..++.|+. . ..+..||..+.+-.. +..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCC
Confidence 34454 5788999888775431 1111112222233456777777773 1 127788988765322 211
Q ss_pred CC-ccE-EEEEEcCCCCEEEEeeCC--------CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecC-C--
Q psy4393 110 HS-NYV-FCCNFNPQSNLIVSGSFD--------ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSY-D-- 174 (247)
Q Consensus 110 ~~-~~v-~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-d-- 174 (247)
.. ... .++.. -++.+++.|+.+ ..+.+||+.+.+-.. .+......-..+. .++++++.|+. +
T Consensus 85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR 161 (315)
T ss_dssp BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence 11 111 01111 255677777642 358899998764221 1111111112222 35667777775 2
Q ss_pred ---CeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcCC-----eEEEEECCCcc
Q psy4393 175 ---GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLDN-----TLKLWDSKVVT 229 (247)
Q Consensus 175 ---g~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~ 229 (247)
..+.+||+.+.+....-..... ..-..+. -+++.++.|+.++ .+.+||..+.+
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 3688999987754332111111 1112222 2567777777654 58888887653
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.77 E-value=0.14 Score=40.45 Aligned_cols=153 Identities=13% Similarity=0.203 Sum_probs=88.4
Q ss_pred CCeEEEEECCCCCEEEEE------------cCCCeEEEEECCCc--eEE-EEEec-----CCccEEEEEEcC--CCC--E
Q psy4393 70 LGISDVAWSSDSRLLVSG------------SDDKTLKIWELSSG--KCL-KTLKG-----HSNYVFCCNFNP--QSN--L 125 (247)
Q Consensus 70 ~~v~~~~~~~~~~~l~~~------------~~d~~i~v~d~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~~~--~ 125 (247)
.+..++...|+|..++++ ..+|.|.++|.++. +.. ..+.+ .......+.+.+ ++. +
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 456777888877655554 26899999998742 211 12222 123455666644 343 3
Q ss_pred EEEeeC--CCCEEEEECCCC--e--EEEeecCC-CCCeEEEEECCCCCEEEEecC-----------------CCeEEEEe
Q psy4393 126 IVSGSF--DESVRIWDVRTG--K--CLKTLPAH-SDPVSAVHFNRDGSLIVSSSY-----------------DGLCRIWD 181 (247)
Q Consensus 126 l~~~~~--d~~i~v~d~~~~--~--~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~v~d 181 (247)
+++-.. +..+.+|++..+ . .+..+... -...+.+.+.++|.++++... .|.+.-+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 333222 456777766543 2 12223221 235688999999987776541 24555555
Q ss_pred CCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSK 226 (247)
Q Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 226 (247)
.. +. ..+. ..-..-+.++|+||++.|+.+. ..++|..||.+
T Consensus 210 ~~--~~-~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 210 PN--DV-RVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp TT--CC-EEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CC--eE-EEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 53 21 1111 1112347899999999888776 46899999976
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.74 E-value=0.048 Score=43.04 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=57.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE-------ecccCCeEEEEECCC---CCEEEEE-cC------
Q psy4393 27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWSSD---SRLLVSG-SD------ 89 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-------~~~~~~v~~~~~~~~---~~~l~~~-~~------ 89 (247)
-.....++|.|+|++|+.+...|.|++++. ++.....+ .........++++|+ +..|..+ ..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 446689999999993444567899998875 33321111 112345788999996 4444433 22
Q ss_pred -CCeEEEEECCCc--e--EEEE-EecC------CccEEEEEEcCCCCEEEEee
Q psy4393 90 -DKTLKIWELSSG--K--CLKT-LKGH------SNYVFCCNFNPQSNLIVSGS 130 (247)
Q Consensus 90 -d~~i~v~d~~~~--~--~~~~-~~~~------~~~v~~~~~~~~~~~l~~~~ 130 (247)
...|..++.... . .... +... ...-..+.|.|+|.+.++.+
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 234656665432 1 1111 1111 11134689999997666643
No 324
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.67 E-value=0.13 Score=44.48 Aligned_cols=192 Identities=11% Similarity=0.082 Sum_probs=100.8
Q ss_pred CCCCEEEEEeCC----CeEEEEecCCCeEEEEE-e------cccCCeEEEEECC-CCCEEEEEcCC------CeEEEEEC
Q psy4393 37 PNGEWLASSSAD----KLIKIWGAYDGKFEKTI-S------GHKLGISDVAWSS-DSRLLVSGSDD------KTLKIWEL 98 (247)
Q Consensus 37 ~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~ 98 (247)
.++..++.|+.+ ..+.+||..+......- . .....-.+++..+ +++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456666667643 45788888776554433 1 1111122333333 66777777643 25788998
Q ss_pred CCceEEEEEecCCcc-EEEEEEcCCCCEEEEeeCCC--CEEEEECCCCeEEEee-----cCCCCCeEEEEECCC-CCEEE
Q psy4393 99 SSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDE--SVRIWDVRTGKCLKTL-----PAHSDPVSAVHFNRD-GSLIV 169 (247)
Q Consensus 99 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~-----~~~~~~i~~~~~~~~-~~~l~ 169 (247)
.+......-...... -.++..-.++.+++.|+.++ .+.+||..+.+-...- ......-.++.+..+ +.+++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 876533211111111 11223324778888887655 6899999876522211 111111233455544 66777
Q ss_pred EecC--C-----CeEEEEeCCCcee-----eeeecc---CCCCCeEEEEECCCCCEEEEEEc--------CCeEEEEECC
Q psy4393 170 SSSY--D-----GLCRIWDTASGQC-----LKTLID---DDNPPVSFVKFSPNGKYILAATL--------DNTLKLWDSK 226 (247)
Q Consensus 170 ~~~~--d-----g~i~v~d~~~~~~-----~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~--------dg~i~vwd~~ 226 (247)
.|+. + ..+.+||+.+.+. ...+.. .....-. +....+++.++.|+. ...+.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 3588999887761 111111 1111112 223333677777774 3468999987
Q ss_pred Ccc
Q psy4393 227 VVT 229 (247)
Q Consensus 227 ~~~ 229 (247)
+.+
T Consensus 635 t~~ 637 (695)
T 2zwa_A 635 SET 637 (695)
T ss_dssp TTE
T ss_pred CCe
Confidence 653
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.60 E-value=0.23 Score=40.67 Aligned_cols=111 Identities=9% Similarity=0.093 Sum_probs=62.3
Q ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE--ec------ccCCeEEEEECCC---CCEEEEEc-
Q psy4393 21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--SG------HKLGISDVAWSSD---SRLLVSGS- 88 (247)
Q Consensus 21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--~~------~~~~v~~~~~~~~---~~~l~~~~- 88 (247)
..+...-.....++|.|+|+++++-...+.|++++..++...... .. .......++|+|+ +..|..+.
T Consensus 20 ~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 20 KVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred EEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 334333456779999999997776433346888876555433221 11 2345779999995 44444332
Q ss_pred C------------CCeEEEEECCCc--e-----EEE-EEec-CCccEEEEEEcCCCCEEEEeeC
Q psy4393 89 D------------DKTLKIWELSSG--K-----CLK-TLKG-HSNYVFCCNFNPQSNLIVSGSF 131 (247)
Q Consensus 89 ~------------d~~i~v~d~~~~--~-----~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~ 131 (247)
. ...|.-++.... . .+. .+.. .......+.|.|+|.+.++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 1 124555554321 1 111 1111 1123577899999998777543
No 326
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.45 E-value=0.23 Score=39.11 Aligned_cols=184 Identities=11% Similarity=0.118 Sum_probs=98.5
Q ss_pred CCeEEEEECCC---CCEEEEEeC----C----CeEEEEecCCC--e---EEEE---Eec-ccCCeEEEEECCCCCEEEEE
Q psy4393 28 KAVSSVKFSPN---GEWLASSSA----D----KLIKIWGAYDG--K---FEKT---ISG-HKLGISDVAWSSDSRLLVSG 87 (247)
Q Consensus 28 ~~v~~~~~s~~---~~~l~~~~~----d----g~v~iw~~~~~--~---~~~~---~~~-~~~~v~~~~~~~~~~~l~~~ 87 (247)
.....++|+|+ +..|+.+.. + ..|..|+.... . .... +.. .......++|.|||.++++.
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 56789999997 455544332 2 46666765443 1 1111 211 11124568999999877765
Q ss_pred cC-------------CCeEEEEECCCc---------eEEEEEecCCccEEEEEEcC-CCCEEEEeeCCC---CEEEEECC
Q psy4393 88 SD-------------DKTLKIWELSSG---------KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE---SVRIWDVR 141 (247)
Q Consensus 88 ~~-------------d~~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~---~i~v~d~~ 141 (247)
+. .+.|.-++.... ..+. ..++.. ...++|+| ++.++++-.... .|.+..
T Consensus 153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~-- 228 (354)
T 3a9g_A 153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL-- 228 (354)
T ss_dssp CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--
T ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--
Confidence 43 245555554321 0111 122222 34688999 677666543322 233332
Q ss_pred CCe------------------EEEeecCCCCCeEEEEEC-------CCCCEEEEecCCCeEEEEeCCCc-eee--eeecc
Q psy4393 142 TGK------------------CLKTLPAHSDPVSAVHFN-------RDGSLIVSSSYDGLCRIWDTASG-QCL--KTLID 193 (247)
Q Consensus 142 ~~~------------------~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~v~d~~~~-~~~--~~~~~ 193 (247)
.+. ++..+.........+.+. .+|.++++....+.|...++... +.. ..+..
T Consensus 229 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~ 308 (354)
T 3a9g_A 229 KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK 308 (354)
T ss_dssp TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT
T ss_pred CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc
Confidence 111 112221112346677773 46777776666778888887753 221 23332
Q ss_pred CCCCCeEEEEECCCCCEEEEEE
Q psy4393 194 DDNPPVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 194 ~~~~~v~~~~~s~~~~~l~~~~ 215 (247)
.....+..+++.|||.+.++..
T Consensus 309 ~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 309 NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCeeEEEECCCCcEEEEEe
Confidence 2234678899999997666654
No 327
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.40 E-value=0.25 Score=38.91 Aligned_cols=199 Identities=13% Similarity=0.104 Sum_probs=104.8
Q ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe------cccCCeEEEEECCC---CCEEEEEcC----
Q psy4393 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSD---SRLLVSGSD---- 89 (247)
Q Consensus 23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~~~---- 89 (247)
+...-.....++|.|+|++++ +..+|.|++++. ++. ..+. ........++++|+ +..|..+..
T Consensus 24 va~~l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 24 VASDLEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp EECSCSCEEEEEEEETTEEEE-EETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred EeCCCCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 333345678999999998555 466799998873 444 2221 12345789999997 444444322
Q ss_pred C----CeEEEEECCCc--e-----EE-EEEecC-CccEEEEEEcCCCCEEEEeeCC-------------CCEEEEECCCC
Q psy4393 90 D----KTLKIWELSSG--K-----CL-KTLKGH-SNYVFCCNFNPQSNLIVSGSFD-------------ESVRIWDVRTG 143 (247)
Q Consensus 90 d----~~i~v~d~~~~--~-----~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-------------~~i~v~d~~~~ 143 (247)
+ ..|..++.... . .+ ..+... ......+.|.|+|.+.++.+.. |.|.-++....
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 2 56777776543 1 11 112211 1123457899999877764432 34444444321
Q ss_pred ---------eEEEeecCCCCCeEEEEECC-CCCEEEEecCCC---eEEEEeCCCc----------------eeeeeeccC
Q psy4393 144 ---------KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG---LCRIWDTASG----------------QCLKTLIDD 194 (247)
Q Consensus 144 ---------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~v~d~~~~----------------~~~~~~~~~ 194 (247)
..+.. ..+.. ...++|+| ++.++++-.... .|.+...... .....+ ..
T Consensus 180 ~p~~npf~~~~i~a-~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~ 256 (354)
T 3a9g_A 180 PPADNPFPNSPIWS-YGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT-GS 256 (354)
T ss_dssp CCTTSSSTTCCEEE-ECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TT
T ss_pred CCCCCCCCCCcEEE-EccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec-CC
Confidence 01111 12222 34688999 676555433221 2433322110 001111 01
Q ss_pred CCCCeEEEEEC-------CCCCEEEEEEcCCeEEEEECCCc
Q psy4393 195 DNPPVSFVKFS-------PNGKYILAATLDNTLKLWDSKVV 228 (247)
Q Consensus 195 ~~~~v~~~~~s-------~~~~~l~~~~~dg~i~vwd~~~~ 228 (247)
.......++|. .+|.++++.-..++|...+.+..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence 12345667773 56766666666778888887643
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.39 E-value=0.23 Score=38.26 Aligned_cols=174 Identities=12% Similarity=0.095 Sum_probs=86.0
Q ss_pred eEEEEecCCCeEEEE-EecccCCeEEEEECCCCCEEEEEcC----CC-------eEEEEECCCceEEEE--EecCCccEE
Q psy4393 50 LIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSD----DK-------TLKIWELSSGKCLKT--LKGHSNYVF 115 (247)
Q Consensus 50 ~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----d~-------~i~v~d~~~~~~~~~--~~~~~~~v~ 115 (247)
.+..||..+.+.... ..........-....++..++.|+. ++ .+..||..+.+.... +......-.
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 378888887765442 1111112222223456777777773 11 277888877654321 111111111
Q ss_pred EEEEcCCCCEEEEeeCC-------CCEEEEECCCCeEEEeecCCCCCe--EEEEECCCCCEEEEecCC------CeEEEE
Q psy4393 116 CCNFNPQSNLIVSGSFD-------ESVRIWDVRTGKCLKTLPAHSDPV--SAVHFNRDGSLIVSSSYD------GLCRIW 180 (247)
Q Consensus 116 ~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d------g~i~v~ 180 (247)
.+.+ ++.+++.|+.+ ..+.+||+.+.+-.. +.....+. .++.. .++.+++.|+.+ ..+.+|
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence 1222 46677777754 247788988765322 11111111 11222 356677777642 358899
Q ss_pred eCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393 181 DTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT 229 (247)
Q Consensus 181 d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~ 229 (247)
|+.+.+....-..... .....+. -+++.++.|+.+ ..+.+||..+.+
T Consensus 181 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 181 NPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred cCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 9988764332111111 1112222 256777777643 357788876543
No 329
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.18 E-value=0.3 Score=37.57 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=97.6
Q ss_pred CCCCCEEEEEe--CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC--------------CeEEEEECC
Q psy4393 36 SPNGEWLASSS--ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD--------------KTLKIWELS 99 (247)
Q Consensus 36 s~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~v~d~~ 99 (247)
+++|.+|+... .++.|...+..... ...+.... + --++++++.|+-+... ..|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~~--~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSNDT--A--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEEE--E--EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCCc--e--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 45677766553 24556666653333 33333221 2 2356788888766442 357777776
Q ss_pred CceEEEEEecCCccEEEEEEcCCCCEEEEee----CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-C
Q psy4393 100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS----FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-D 174 (247)
Q Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d 174 (247)
.++... +.... ...++++++.|+... ....|+..++.... ...+..+.. ..++++++.|+-.+. .
T Consensus 97 g~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTT
T ss_pred CCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCC
Confidence 655332 32222 235677888888765 23456666665333 333333322 346778887776554 5
Q ss_pred CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC--CeEEEEECCCcce
Q psy4393 175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD--NTLKLWDSKVVTP 230 (247)
Q Consensus 175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~ 230 (247)
.+|.+.++..+... .+... ... ..++|++.+|+-...+ ..|..-+++....
T Consensus 167 ~~Iy~~~l~g~~~~-~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~ 219 (302)
T 3s25_A 167 GQLYRYDTASQSEA-LFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP 219 (302)
T ss_dssp CCEEEEETTTTEEE-EEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred ceEEEEECCCCCEE-EEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe
Confidence 68888888766533 33221 222 3456999998877654 3566666655443
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.14 E-value=0.43 Score=39.03 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=60.7
Q ss_pred cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE--EEec------CCccEEEEEEcCC---CCEEEEeeC------
Q psy4393 69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK--TLKG------HSNYVFCCNFNPQ---SNLIVSGSF------ 131 (247)
Q Consensus 69 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~------~~~~v~~~~~~~~---~~~l~~~~~------ 131 (247)
-.....|+|.|+|+++++....+.|.+++..++.... .+.. .......++++|+ +..|+....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456789999999977776555578888765554322 2211 1344668999995 455544432
Q ss_pred -------CCCEEEEECCCC-------eEEE-eecC-CCCCeEEEEECCCCCEEEEec
Q psy4393 132 -------DESVRIWDVRTG-------KCLK-TLPA-HSDPVSAVHFNRDGSLIVSSS 172 (247)
Q Consensus 132 -------d~~i~v~d~~~~-------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~ 172 (247)
...|.-+++..+ +.+. .+.. .......|.|.|||.++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 124555554321 1111 1221 123468899999998777644
No 331
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.67 E-value=0.56 Score=36.59 Aligned_cols=158 Identities=10% Similarity=0.180 Sum_probs=96.8
Q ss_pred CCCeEEEEECCCCCEEEEEeC-------CCeEEEEecCCCeEEEEEecccCCeEEEEEC--CC-CCEEEEEcC---CCeE
Q psy4393 27 TKAVSSVKFSPNGEWLASSSA-------DKLIKIWGAYDGKFEKTISGHKLGISDVAWS--SD-SRLLVSGSD---DKTL 93 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---d~~i 93 (247)
...|..-.-+++.++++..+. .|.+++|..+.+ ..+.+.+|-.....+... +. .+.++.+.. .+.+
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 229 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 229 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 356778888999998765432 367888987554 445666665443332221 11 123333332 2588
Q ss_pred EEEECCCc---e-----EEEEE-e---cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEE
Q psy4393 94 KIWELSSG---K-----CLKTL-K---GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF 161 (247)
Q Consensus 94 ~v~d~~~~---~-----~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 161 (247)
++-++... . ....+ . ...+.-.++..++....++.-+.-|.+++||+.++.++..-+....+|..-+.
T Consensus 230 hIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~ 309 (365)
T 2xzh_A 230 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 309 (365)
T ss_dssp EEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecc
Confidence 88887432 1 01111 1 11233446788888888999999999999999999998887766677765555
Q ss_pred CCCCCEEEEecCCCeEEEEeCCCc
Q psy4393 162 NRDGSLIVSSSYDGLCRIWDTASG 185 (247)
Q Consensus 162 ~~~~~~l~~~~~dg~i~v~d~~~~ 185 (247)
+.+..-++....+|++.-..+...
T Consensus 310 ~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 310 HEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EGGGTEEEEEETTCEEEEEEECTT
T ss_pred cCCCCcEEEEcCCCEEEEEEECcc
Confidence 444344444556776655555443
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.63 E-value=0.41 Score=44.74 Aligned_cols=193 Identities=12% Similarity=0.193 Sum_probs=108.4
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC-ceEEEEEecC-
Q psy4393 33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLKTLKGH- 110 (247)
Q Consensus 33 ~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~- 110 (247)
...+|..+.+|.- ....++|+++++........- ...|.-=.|-.+.. |+-. .+..|.-|++.. ..+++.+..|
T Consensus 71 AIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lV-T~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEe-cCCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEE-cCCeEEEeccCCCCccHHHHhcch
Confidence 4566777766653 367899999987655544432 22454445654433 3333 245789999964 2333333322
Q ss_pred ---CccEEEEEEcCCCCEEEEee-------CCCCEEEEECCCCeEEEeecCCCCCeEEEEEC--CC-CCEEEEec---CC
Q psy4393 111 ---SNYVFCCNFNPQSNLIVSGS-------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN--RD-GSLIVSSS---YD 174 (247)
Q Consensus 111 ---~~~v~~~~~~~~~~~l~~~~-------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~l~~~~---~d 174 (247)
...|.....+++.++++..| -.|.+.+|....+. .+.+.+|.+....+... +. ..+++.+. ..
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 23455666788888776543 24678888776432 23344554433322221 11 12222221 13
Q ss_pred CeEEEEeCCCc---ee------eeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393 175 GLCRIWDTASG---QC------LKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA 231 (247)
Q Consensus 175 g~i~v~d~~~~---~~------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 231 (247)
+.+++.++... .. ...++.+ ...|| .+..++....+...+.-|.|.+||..+++++
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcce-EEEeccccCEEEEEecCceEEEEecccchhh
Confidence 68888887543 10 0111111 12233 4677888888999999999999999887653
No 333
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.46 E-value=0.68 Score=36.13 Aligned_cols=197 Identities=13% Similarity=0.199 Sum_probs=121.4
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC-ceEEEEEecC
Q psy4393 32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLKTLKGH 110 (247)
Q Consensus 32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~ 110 (247)
+...+|..+.+|.-. ...++++|+++........- ...|.-=.|-.+.. |+-.+ +..|+-|++.. ..+.+.+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 456788888777643 67899999998877766654 33565556765443 33332 45789999974 3455555544
Q ss_pred C----ccEEEEEEcCCCCEEEEeeC-------CCCEEEEECCCCeEEEeecCCCCCeEEEEECCC--C-CEEEEecC---
Q psy4393 111 S----NYVFCCNFNPQSNLIVSGSF-------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD--G-SLIVSSSY--- 173 (247)
Q Consensus 111 ~----~~v~~~~~~~~~~~l~~~~~-------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~l~~~~~--- 173 (247)
. ..|.....+++.++++..+- .|.+.+|..+.+. .+.+.+|......+....+ . .+++.+..
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 2 35666677888887765442 3567888877543 3455666543333322211 1 23333322
Q ss_pred CCeEEEEeCCCc---e------eeeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393 174 DGLCRIWDTASG---Q------CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC 234 (247)
Q Consensus 174 dg~i~v~d~~~~---~------~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 234 (247)
.+.+++.++... . ....++.. ...|| .+..++....++.-+.-|.|++||..++.++..-
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPV-amqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceE-EEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 258888887432 1 11111222 22344 4778888889999999999999999998876543
No 334
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.41 E-value=0.73 Score=36.21 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=64.0
Q ss_pred EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE------ecccCCeEEEEECCC----CCEEEEE--cC
Q psy4393 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI------SGHKLGISDVAWSSD----SRLLVSG--SD 89 (247)
Q Consensus 22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~------~~~~~~v~~~~~~~~----~~~l~~~--~~ 89 (247)
.+...-.....++|.|+|+++++-...|.|++++..++...... .........++++|+ +.+.++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 34445567789999999997776544899999876555432211 122456789999995 4333332 23
Q ss_pred CCeEEEEECCCc----------eEE-EEEec-CCccEEEEEEcCCCCEEEEee
Q psy4393 90 DKTLKIWELSSG----------KCL-KTLKG-HSNYVFCCNFNPQSNLIVSGS 130 (247)
Q Consensus 90 d~~i~v~d~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~ 130 (247)
+..|.-|....+ +.+ ..+.. ....-..+.|.|+|.+.++.+
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 445555655431 111 11211 111234578999998877754
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.38 E-value=0.26 Score=38.62 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=44.0
Q ss_pred CCCEEEEEeC-CCeEEEEecCC--CeEEEEEecc---cCCeEEEEECCCCCEEEEEcC-C---------CeEEEEECCCc
Q psy4393 38 NGEWLASSSA-DKLIKIWGAYD--GKFEKTISGH---KLGISDVAWSSDSRLLVSGSD-D---------KTLKIWELSSG 101 (247)
Q Consensus 38 ~~~~l~~~~~-dg~v~iw~~~~--~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-d---------~~i~v~d~~~~ 101 (247)
++..++.|+. ...+.+||... .+....-.-. ........+ +++.++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5565566654 34688888763 3322111111 111122222 4566666665 2 35888998876
Q ss_pred eEEEEEecC-CccEEEEEEcCCCCEEEEeeCC
Q psy4393 102 KCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFD 132 (247)
Q Consensus 102 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 132 (247)
+-...-... ...........++.+++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 533211111 1111111122456777888754
No 336
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.35 E-value=0.9 Score=36.93 Aligned_cols=196 Identities=13% Similarity=0.208 Sum_probs=121.9
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC-ceEEEEEecC
Q psy4393 32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLKTLKGH 110 (247)
Q Consensus 32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~ 110 (247)
+...+|..+.+|.-. ...++++|+++........-.. .|.-=.|-.+ +.|+-. .+..|+-|++.. ..+++.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence 456788888776643 6799999999887776665433 4544455443 334333 346799999964 3455555544
Q ss_pred C----ccEEEEEEcCCCCEEEEeeC-------CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC---CEEEEecC---
Q psy4393 111 S----NYVFCCNFNPQSNLIVSGSF-------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---SLIVSSSY--- 173 (247)
Q Consensus 111 ~----~~v~~~~~~~~~~~l~~~~~-------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~--- 173 (247)
. ..|.....+++.++++..+- .|.+.+|....+. .+.+.+|......+....+. .+++.+..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 2 35666777888888775432 3568888876543 34566665544444333211 23333332
Q ss_pred CCeEEEEeCCCc---------eeeeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393 174 DGLCRIWDTASG---------QCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII 233 (247)
Q Consensus 174 dg~i~v~d~~~~---------~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 233 (247)
.+.+++.++... +....++.. ...|| .+..++....++.-+.-|.|++||..++.++..
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv-amqvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee-EEEecccCCEEEEEecCceEEEEecccceeeee
Confidence 368888887542 111111211 22344 477888888999999999999999999887654
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.089 Score=41.23 Aligned_cols=114 Identities=8% Similarity=0.121 Sum_probs=72.4
Q ss_pred CEEEEeeCCCCEEEEECCCCeEEEeecCC-CCCeEEEEEC--C-CCCEEEEe-cCCCeEEEEeCCCceeeeeeccC---C
Q psy4393 124 NLIVSGSFDESVRIWDVRTGKCLKTLPAH-SDPVSAVHFN--R-DGSLIVSS-SYDGLCRIWDTASGQCLKTLIDD---D 195 (247)
Q Consensus 124 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~--~-~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~---~ 195 (247)
.+++.++.||.|+-+|..+|+....++.. ..+.....-. + ++..++.. +.||.+..++..++...-.+... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888899999999999999988887653 1222221100 1 23344443 58999999998887543222111 1
Q ss_pred CCCeEE---EEE-CC----CCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393 196 NPPVSF---VKF-SP----NGKYILAATLDNTLKLWDSKVVTPAIICSTP 237 (247)
Q Consensus 196 ~~~v~~---~~~-s~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 237 (247)
..++.. ... .+ .+..+++|+.+|++...|.++++.+-.+...
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 223321 001 01 4567889999999999999999988877654
No 338
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.00 E-value=1.7 Score=37.97 Aligned_cols=190 Identities=15% Similarity=0.179 Sum_probs=107.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
..|.++.-..+|. |..|+.+| +..||..+.............|.++.. .++ .|..++.+ -+..+|..+++.. .+
T Consensus 63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~ 136 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SF 136 (758)
T ss_dssp SCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EE
T ss_pred ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Ee
Confidence 3577777776664 44455554 778887665432211111224666643 344 45455555 5778898765543 22
Q ss_pred e-----cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe-ecCC----CCCeEEEEECCCCCEEEEecCCCeE
Q psy4393 108 K-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAH----SDPVSAVHFNRDGSLIVSSSYDGLC 177 (247)
Q Consensus 108 ~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i 177 (247)
. .....|.++....++.+.+. +.+ -+..+|..+++.... .... ...|.++...+++..|-.|+. +-+
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl 213 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYVG-TYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL 213 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEEE-eCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence 1 12345778877878877663 443 477888876653221 1111 224788888777664444543 457
Q ss_pred EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
..+|..+++.... .......|.++..+.+|.+.+. +. +-+.+++.+...
T Consensus 214 ~~~~~~~~~~~~~-~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~ 262 (758)
T 3ott_A 214 FQYFPSTGQIKQT-EAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTP 262 (758)
T ss_dssp EEEETTTTEEEEE-EEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSC
T ss_pred eEEcCCCCeEEec-cCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCc
Confidence 7888877653221 1111234777888888775554 43 457888876543
No 339
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.27 E-value=1.5 Score=34.36 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=40.4
Q ss_pred CeEEEEECC-------CCCEEEEecCCCeEEEEeCCCceeee--eeccCCCCCeEEEEECCCCCEEEEEE-cCCeEE
Q psy4393 155 PVSAVHFNR-------DGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLK 221 (247)
Q Consensus 155 ~i~~~~~~~-------~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 221 (247)
....+.+.. ++.++++....+.|...++..++... .+.......+..+++.|||.+.++.. .+|+|.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELL 348 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEE
Confidence 355667653 46667666667788777776554322 22222234678899999998666543 345443
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.12 E-value=2 Score=35.03 Aligned_cols=158 Identities=10% Similarity=0.180 Sum_probs=99.9
Q ss_pred CCCeEEEEECCCCCEEEEEe-------CCCeEEEEecCCCeEEEEEecccCCeEEEEECCC---CCEEEEEcC---CCeE
Q psy4393 27 TKAVSSVKFSPNGEWLASSS-------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SRLLVSGSD---DKTL 93 (247)
Q Consensus 27 ~~~v~~~~~s~~~~~l~~~~-------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---d~~i 93 (247)
...|..-.-+++.++++..+ ..|.+++|..+.+ ..+.+.+|-.....+...-+ .+.++.+.. .+.+
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 228 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 35677888899999876543 2367888987554 44566676554443333211 123444433 2688
Q ss_pred EEEECCCc---e-----EEEEEe----cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEE
Q psy4393 94 KIWELSSG---K-----CLKTLK----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF 161 (247)
Q Consensus 94 ~v~d~~~~---~-----~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 161 (247)
++-++... . ....+. ...+.-.++..++....++.-+.-|.+++||+.++.++..-+....+|..-+.
T Consensus 229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~ 308 (494)
T 1bpo_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 308 (494)
T ss_dssp EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecc
Confidence 99888532 1 111111 11233456788888889999999999999999999998887766677766555
Q ss_pred CCCCCEEEEecCCCeEEEEeCCCc
Q psy4393 162 NRDGSLIVSSSYDGLCRIWDTASG 185 (247)
Q Consensus 162 ~~~~~~l~~~~~dg~i~v~d~~~~ 185 (247)
+....-++....+|+|.-..+...
T Consensus 309 ~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 309 HEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp ETTTTEEEEEETTCEEEEEEECTT
T ss_pred cCCCCcEEEEccCceEEEEEEccc
Confidence 555444555557777665555443
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.08 E-value=2.4 Score=36.71 Aligned_cols=150 Identities=9% Similarity=0.084 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCC----CeEEEEECCCceEEEEE-e-----cCC--ccEEEEEEcCCCCEEEEeeCCC------CEEEEEC
Q psy4393 79 SDSRLLVSGSDD----KTLKIWELSSGKCLKTL-K-----GHS--NYVFCCNFNPQSNLIVSGSFDE------SVRIWDV 140 (247)
Q Consensus 79 ~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~-~-----~~~--~~v~~~~~~~~~~~l~~~~~d~------~i~v~d~ 140 (247)
.++..++.|+.+ ..+.+||..+.+....- . ... ..-..+.+..++.+++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 355666666643 35778888876543222 1 011 1112222322677888887543 4788998
Q ss_pred CCCeEEE--eecCCCCCeEEEEECCCCCEEEEecCCC--eEEEEeCCCceeeeeec----cCCCCCeEEEEECCC-CCEE
Q psy4393 141 RTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYDG--LCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPN-GKYI 211 (247)
Q Consensus 141 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~----~~~~~~v~~~~~s~~-~~~l 211 (247)
.+.+-.. .+...... .+++...++.+++.|+.++ .+.+||..+.+....-. ......-..+.+..+ ++.+
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 8754221 11111111 2233324778888887655 68999998876443221 001111122445555 6677
Q ss_pred EEEEc--C-----CeEEEEECCCcc
Q psy4393 212 LAATL--D-----NTLKLWDSKVVT 229 (247)
Q Consensus 212 ~~~~~--d-----g~i~vwd~~~~~ 229 (247)
+.|+. + +.+.+||..+..
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EECCcCCCCCeeeCcEEEEEccCCc
Confidence 77765 2 468899987665
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.05 E-value=1.7 Score=34.10 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=62.9
Q ss_pred EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE--EEee----cCCCCCeEEEEECCC---CCEEEEe---cCC
Q psy4393 107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC--LKTL----PAHSDPVSAVHFNRD---GSLIVSS---SYD 174 (247)
Q Consensus 107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~----~~~~~~i~~~~~~~~---~~~l~~~---~~d 174 (247)
+...-..-+.++|.|++.++++-...|.|++++...++. +..+ .........|+++|+ +..|++. ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 333344567899999999888766589999998765543 2222 122456789999995 3344432 234
Q ss_pred CeEEEEeCCCc----------eeee-eeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393 175 GLCRIWDTASG----------QCLK-TLIDDDNPPVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 175 g~i~v~d~~~~----------~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~ 215 (247)
+.|.-|....+ +.+. .+..........|.|.|||.+.++.+
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 45655654431 1111 11111111234589999998666644
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.88 E-value=0.85 Score=38.26 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=62.8
Q ss_pred eEEEEECCCCCEEEEEcC-CCeEEEEECCCce-------------EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEE
Q psy4393 72 ISDVAWSSDSRLLVSGSD-DKTLKIWELSSGK-------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137 (247)
Q Consensus 72 v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 137 (247)
...+..+|||+++++++. +.++.++|++.-. ......... .-...+|+++|+...+-.-|..|..
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl-GPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL-GPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS-CEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC-cccEEEECCCCceEeeeeecceEEE
Confidence 456788999999876654 7799999987421 122222222 2457789999965555668899999
Q ss_pred EECCCC----------eEEEeecCCCCCeEEEE-----ECCCCCEEEEec
Q psy4393 138 WDVRTG----------KCLKTLPAHSDPVSAVH-----FNRDGSLIVSSS 172 (247)
Q Consensus 138 ~d~~~~----------~~~~~~~~~~~~i~~~~-----~~~~~~~l~~~~ 172 (247)
|++... ..+..+..|-.+-.-.+ -.|+|++|++..
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 998642 23444555543322111 146788887653
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.33 E-value=4 Score=38.51 Aligned_cols=156 Identities=11% Similarity=0.201 Sum_probs=88.4
Q ss_pred CCeEEEEECCCCCEEEEEe-------CCCeEEEEecCCCeEEEEEecccCCeEEEEEC--C-CCCEEEEEcC---CCeEE
Q psy4393 28 KAVSSVKFSPNGEWLASSS-------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--S-DSRLLVSGSD---DKTLK 94 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~-------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~l~~~~~---d~~i~ 94 (247)
..|..-.-+++.++++..| ..|.+.+|..+.+ ..+.+.||-.....+... + ....++.+.. .+.++
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLh 229 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 229 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEE
Confidence 5677788889999876433 3478888887543 334455554443333221 1 1223332222 26888
Q ss_pred EEECCCc---e--EEE----EEe---cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEEC
Q psy4393 95 IWELSSG---K--CLK----TLK---GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 162 (247)
Q Consensus 95 v~d~~~~---~--~~~----~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 162 (247)
+-++... . ..+ .+. ...+.-.++..++....++..+.-|.++++|+.++.++..-+....+|...+.+
T Consensus 230 i~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~ 309 (1630)
T 1xi4_A 230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 309 (1630)
T ss_pred EEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccC
Confidence 8887542 1 100 000 011223457778888888888999999999999999877655545555544444
Q ss_pred CCCCEEEEecCCCeEEEEeCCC
Q psy4393 163 RDGSLIVSSSYDGLCRIWDTAS 184 (247)
Q Consensus 163 ~~~~~l~~~~~dg~i~v~d~~~ 184 (247)
....-++.....|+|.-..+..
T Consensus 310 ~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 310 EATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred CCCCceEEEcCCceEEEEEEcc
Confidence 3322333344556554444433
No 345
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=91.90 E-value=7.8 Score=35.83 Aligned_cols=204 Identities=11% Similarity=0.050 Sum_probs=107.8
Q ss_pred cCCCCeEEEEECCC----CCEEEEEe---CCCeEEEEecCCC-eEEEEEec-ccCCeEEEEEC---CCCCEEEEEcCCCe
Q psy4393 25 GHTKAVSSVKFSPN----GEWLASSS---ADKLIKIWGAYDG-KFEKTISG-HKLGISDVAWS---SDSRLLVSGSDDKT 92 (247)
Q Consensus 25 ~h~~~v~~~~~s~~----~~~l~~~~---~dg~v~iw~~~~~-~~~~~~~~-~~~~v~~~~~~---~~~~~l~~~~~d~~ 92 (247)
..-++|..++.... ...|++++ .+|.+++...--+ +....+.- .-..++.+... ....+|+.+..+.+
T Consensus 372 ~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T 451 (1158)
T 3ei3_A 372 TNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT 451 (1158)
T ss_dssp CCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE
T ss_pred cCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe
Confidence 45678888887432 12444432 5678888753211 11112211 11223333322 12456666655555
Q ss_pred EEEEECCCceEEEEEec-----CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-CCeEEEEECCCCC
Q psy4393 93 LKIWELSSGKCLKTLKG-----HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNRDGS 166 (247)
Q Consensus 93 i~v~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~ 166 (247)
.++.+... .+..+.. ....+.+..+ + +..++-... ..|++.+......+..+.... ..|...+.+. .
T Consensus 452 -~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~-~~~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~ 524 (1158)
T 3ei3_A 452 -RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-A-HQQLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--S 524 (1158)
T ss_dssp -EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-T-TTEEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--S
T ss_pred -EEEEEeCC-cccccccccccCCCCcEEEEEc-C-CCeEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--C
Confidence 45554221 2222211 1112222222 2 234444433 357788876555566665433 3566656543 4
Q ss_pred EEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC------CCEEEEEEc-CCeEEEEECCCcceEEEEcc
Q psy4393 167 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN------GKYILAATL-DNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~ 236 (247)
.++.+. ++.+.++.+..++........-...|.++++.|. +++++.|.. |++++|+++.+.+++-....
T Consensus 525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L 600 (1158)
T 3ei3_A 525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML 600 (1158)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC
Confidence 555554 6778888776544222111122346899998864 469999996 99999999998777655554
No 346
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.51 E-value=6.2 Score=32.30 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=58.9
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCe---EEEEEe---------cccCCeEEEEECCC----CCEEEEEcC-
Q psy4393 28 KAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGK---FEKTIS---------GHKLGISDVAWSSD----SRLLVSGSD- 89 (247)
Q Consensus 28 ~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~---~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~- 89 (247)
..-..++|.|+|. .|+.+...|.|++++..... ....+. ........++|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4557899999996 45556788999999753221 111111 01356788999996 444443221
Q ss_pred -C----------CeEEEEECCC----------ceEEEEEe--cCCccEEEEEEcCCCCEEEEeeCC
Q psy4393 90 -D----------KTLKIWELSS----------GKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFD 132 (247)
Q Consensus 90 -d----------~~i~v~d~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 132 (247)
+ ..|.-|.+.. .+.+..+. ...-.-..+.|.|+|.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344455432 12222222 111235678999999887776543
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=87.62 E-value=13 Score=32.23 Aligned_cols=192 Identities=10% Similarity=0.115 Sum_probs=107.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe
Q psy4393 29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK 108 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 108 (247)
.|.++...+++..|..|+. +-+..++..++............|.++...++|.+.+.. .+ -+.+++..++.......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCCcEEEEEc
Confidence 3778877777665555553 457778876655432211123357888888888766544 44 57778877654322111
Q ss_pred c-------CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee-----cCCCCCeEEEEECCCCCEEEEecCCCe
Q psy4393 109 G-------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDGL 176 (247)
Q Consensus 109 ~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~ 176 (247)
. ....|.++..+.++.+.+. +..| +.++.....-..... ......|.++.-+.+|.+.+. +.+|
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~lWiG-T~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G- 344 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHNIWLG-TDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG- 344 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCCEEEE-ESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-
T ss_pred CCCCcCcCCcCeEEEEEEcCCCCEEEE-eCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-
Confidence 1 1235888888888876654 3445 544432211111111 012345888888888886654 3455
Q ss_pred EEEEeCCCcee--eeeecc------CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393 177 CRIWDTASGQC--LKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229 (247)
Q Consensus 177 i~v~d~~~~~~--~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 229 (247)
+..++..+++. ...+.. .....|.++.-+.+|++-+ |+ ++-|..||.++..
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~ 403 (758)
T 3ott_A 345 LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQ 403 (758)
T ss_dssp EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTE
T ss_pred ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCc
Confidence 55666554321 111111 0123478888888877544 44 4678889987653
No 348
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=86.59 E-value=4.3 Score=34.40 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=42.9
Q ss_pred eEEEEECCCCCEEEEecCC------------CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393 156 VSAVHFNRDGSLIVSSSYD------------GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 156 i~~~~~~~~~~~l~~~~~d------------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 215 (247)
.-.|.|+|.|.+++.-..+ ..+.+.+..+++..+-+.......++.++|+||++.|...-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 3568999999976654322 24666777777765555555667789999999999887764
No 349
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=84.34 E-value=8.9 Score=32.35 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=41.6
Q ss_pred CeEEEEECCCCCEEEEecC------------CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393 155 PVSAVHFNRDGSLIVSSSY------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 155 ~i~~~~~~~~~~~l~~~~~------------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 215 (247)
....|.|+++|.+.+.... ...+..++..+++....+.......++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3567899999997773321 125677777777754433323345679999999999888765
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.10 E-value=16 Score=29.88 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=57.9
Q ss_pred CCeEEEEECCCCC-EEEEEcCCCeEEEEECCCce---EEEEEe---c------CCccEEEEEEcCC----CCEEEEeeC-
Q psy4393 70 LGISDVAWSSDSR-LLVSGSDDKTLKIWELSSGK---CLKTLK---G------HSNYVFCCNFNPQ----SNLIVSGSF- 131 (247)
Q Consensus 70 ~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~---~~~~~~---~------~~~~v~~~~~~~~----~~~l~~~~~- 131 (247)
.....|+|.|+|. .++++...|.|++++..... .+..+. . .......++++|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4467899999986 45566678999999754221 111111 0 1234678999986 333333221
Q ss_pred -C----------CCEEEEECCC----------CeEEEeec--CCCCCeEEEEECCCCCEEEEecC
Q psy4393 132 -D----------ESVRIWDVRT----------GKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSY 173 (247)
Q Consensus 132 -d----------~~i~v~d~~~----------~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~ 173 (247)
+ ..|.-|.+.. .+.+..+. ........|.|.|||.++++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1333354432 12233222 22234678999999987776554
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.21 E-value=31 Score=31.15 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=31.0
Q ss_pred CeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 71 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
.+.++...++..++++-+.|+.+++|++.+++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3566777778889999999999999999999887654
No 352
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=80.81 E-value=36 Score=31.57 Aligned_cols=186 Identities=12% Similarity=0.029 Sum_probs=90.0
Q ss_pred CCCeEEEEECCC------CCEEEEEeC-CCeEEEEecCCCeEEEEEec-ccCCeEEEEEC--CCCCEEEEEcCCCeEEEE
Q psy4393 27 TKAVSSVKFSPN------GEWLASSSA-DKLIKIWGAYDGKFEKTISG-HKLGISDVAWS--SDSRLLVSGSDDKTLKIW 96 (247)
Q Consensus 27 ~~~v~~~~~s~~------~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~ 96 (247)
...|.|+++.|. +++++.|.. |+.++|+++.+.+......- ......++.+. ....++..+-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 468999999864 358888886 99999999976554433221 11223333332 233467888889987655
Q ss_pred EC--CCceEEE--EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEE-EEECCC--CCEEE
Q psy4393 97 EL--SSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSA-VHFNRD--GSLIV 169 (247)
Q Consensus 97 d~--~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~-~~~~~~--~~~l~ 169 (247)
.+ .++...- ...-...++.-..+...+..-+.+..++..-++--+..-....+.. ..+.. ..|+.. ..-++
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~--~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL--KEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSS--SCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccCh--HHhceEeccCcccCCCcEE
Confidence 44 3443221 1111122333233333333333333345444444332211222221 12222 234321 22344
Q ss_pred EecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393 170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 215 (247)
..+ ++.+++..+...+.......+-......++++|+.+.++.+.
T Consensus 711 ~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 711 LAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp EEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred EEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence 333 445777766432222111111223457788888777655543
No 353
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.24 E-value=18 Score=27.77 Aligned_cols=187 Identities=10% Similarity=0.066 Sum_probs=98.6
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCeE-------EE--EEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC---c---
Q psy4393 37 PNGEWLASSSADKLIKIWGAYDGKF-------EK--TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS---G--- 101 (247)
Q Consensus 37 ~~~~~l~~~~~dg~v~iw~~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~--- 101 (247)
++...+++.+.+|.|+--....-.. .. .+. ....+..+........++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4566777888889888765432211 00 111 122333443444455666677777766554421 1
Q ss_pred ---eE---EEEEecCCccEEEEEEcC---CCCEEEEeeCCCCEEEEECCC-------CeEEEeecCCCCCeEEEEECCCC
Q psy4393 102 ---KC---LKTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVRT-------GKCLKTLPAHSDPVSAVHFNRDG 165 (247)
Q Consensus 102 ---~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~ 165 (247)
.. ...+.. ...+..+...+ +...++..+..|.++...+.. |.....+.. .+.+-.+......
T Consensus 85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 00 001222 22343332222 456788889999988887632 222222333 3445444444445
Q ss_pred CEEEEecCCCeEEEEeCCCce-------eeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393 166 SLIVSSSYDGLCRIWDTASGQ-------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226 (247)
Q Consensus 166 ~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 226 (247)
..++..+.+|....+....-. -.+.+.......+..+..-+++..|++.+..|..+.....
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 567778889988888664311 1111112223445555554556778888999998888763
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=79.09 E-value=18 Score=27.18 Aligned_cols=147 Identities=14% Similarity=0.059 Sum_probs=65.1
Q ss_pred CeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec
Q psy4393 71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP 150 (247)
Q Consensus 71 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 150 (247)
.|..++.... ..+.-. +|.+..|=......+..-......|..++.......++ . +|.+..|-......+..-.
T Consensus 103 ~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg~p~ 176 (282)
T 3qhy_B 103 GVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTTVPA 176 (282)
T ss_dssp SEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTSCCG
T ss_pred CeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCCCce
Confidence 3554444332 233334 77887775443211110011123355554443322222 3 6888888654321110000
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393 151 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230 (247)
Q Consensus 151 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 230 (247)
.....|..++--.+.. ++. .+|.+..|-......+.. .......|..++...+. .++. + ||.|..|=.+...|
T Consensus 177 ~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~~gq 249 (282)
T 3qhy_B 177 EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSRTAP 249 (282)
T ss_dssp GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTCCCC
T ss_pred ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCC-CcccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCCCcc
Confidence 0123466555443322 333 588888885432211110 01112345556554433 2333 3 99999996655433
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=78.32 E-value=23 Score=27.88 Aligned_cols=59 Identities=8% Similarity=-0.066 Sum_probs=29.3
Q ss_pred CeEEEEECCC-CCEEEEecCCCeEEEEeCCCceeeeeecc-CCC---CCeEEEEECCC-CCEEEEEE
Q psy4393 155 PVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDN---PPVSFVKFSPN-GKYILAAT 215 (247)
Q Consensus 155 ~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~---~~v~~~~~s~~-~~~l~~~~ 215 (247)
.+.++.++|+ ...++++...+ |...+-. ++....+.. ... ..+..++++|. ...|.+++
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeCCC-CCcceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 4788999886 35566665544 4443322 222222211 111 23456788763 34455543
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=76.91 E-value=21 Score=26.80 Aligned_cols=182 Identities=12% Similarity=0.053 Sum_probs=82.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCC-CeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 29 AVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
.|..++-... +.+.-. ||.|..|-... ++.-.. ......|..++.......+ -. ||.+..|-......+..-
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~hs~~--l~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNYHSLA--LK-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSSEEEE--EE-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCCEEEE--EE-CCEEEEeeCCCCCCCCCC
Confidence 4555554332 222224 78888886432 111000 0112346666554333222 23 788888865432111000
Q ss_pred ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee
Q psy4393 108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187 (247)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 187 (247)
..-...|..++...... +.-. +|.++.|-....-.+-.-......|..++.-.+.. ++ -. +|.+..|-......
T Consensus 98 ~~~~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GGGSSSEEEEEEETTEE--EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTST
T ss_pred cccCCCeEEEECcCCEE--EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCC
Confidence 01123455555544333 3334 88899997543211100001123455555433322 22 23 68888885433211
Q ss_pred eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV 227 (247)
Q Consensus 188 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 227 (247)
+.. .......|..++...+. .++. .||.|..|=.+.
T Consensus 172 lg~-p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 172 TTV-PAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp TSC-CGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCT
T ss_pred CCC-ceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCC
Confidence 110 11112356666655443 3333 599999996554
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=74.53 E-value=28 Score=26.96 Aligned_cols=145 Identities=10% Similarity=0.074 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCCeEEEEECCCce-------EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECC--C--------
Q psy4393 80 DSRLLVSGSDDKTLKIWELSSGK-------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR--T-------- 142 (247)
Q Consensus 80 ~~~~l~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~--~-------- 142 (247)
+...++.++.+|.++--.+.... ....++.. +.+..+........++..+..|.+..+... .
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 56789999999999987764321 11223333 334444444445667777888887777655 2
Q ss_pred -CeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce-------eeeeecc-CCCCCeEEEEECCCCCEEEE
Q psy4393 143 -GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-------CLKTLID-DDNPPVSFVKFSPNGKYILA 213 (247)
Q Consensus 143 -~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~-~~~~~v~~~~~s~~~~~l~~ 213 (247)
|.....+.. ...|.++...+.+..++..+..|.++.-.+..-. -...+.. .....+..+....+...++.
T Consensus 187 ~Gv~~i~L~~-~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 187 SGVQGMRFNI-DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp BCEESSCCCT-TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred CCeeeecCCC-CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence 111112222 3456666655566678888899988877654321 1111111 11233443333344556777
Q ss_pred EEcCCeEEEEECC
Q psy4393 214 ATLDNTLKLWDSK 226 (247)
Q Consensus 214 ~~~dg~i~vwd~~ 226 (247)
.+.+|.+.-++..
T Consensus 266 ~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 266 VTSGGGVIRTAAR 278 (327)
T ss_dssp EEGGGCEEEEEGG
T ss_pred EcCCCeEEEEehh
Confidence 7878887777643
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=74.53 E-value=25 Score=29.78 Aligned_cols=58 Identities=16% Similarity=0.311 Sum_probs=37.9
Q ss_pred eEEEEECCCCCEEEEEeCC------------CeEEEEecCCCeEEEEEecc-cCCeEEEEECCCCCEEEEE
Q psy4393 30 VSSVKFSPNGEWLASSSAD------------KLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSG 87 (247)
Q Consensus 30 v~~~~~s~~~~~l~~~~~d------------g~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 87 (247)
.-.|+|+|.|.+++.-..+ ..+.+.+..+++....+.+. ...++.+.|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3568999999966643221 13444555566665555544 3458899999999887665
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=72.90 E-value=27 Score=26.18 Aligned_cols=194 Identities=13% Similarity=0.008 Sum_probs=103.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEe---cCCCeEEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEECCCc---
Q psy4393 29 AVSSVKFSPNGEWLASSSADKLIKIWG---AYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG--- 101 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~---~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~--- 101 (247)
.+..+.-......|+..+.+|.++.-. +....... +-.....|..+.-.. +...++.++.+|.++-..+..-
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 344444444444555556677665432 22221111 122234455553321 4578889999999998876442
Q ss_pred ---eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC---------CeEEEeecCCCCCeEEEEECCCCCEEE
Q psy4393 102 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT---------GKCLKTLPAHSDPVSAVHFNRDGSLIV 169 (247)
Q Consensus 102 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~ 169 (247)
.....++.. +.+..+........++..+..|.+..+.... |.....+.. ...+..+...+++..++
T Consensus 104 ~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll 181 (276)
T 3no0_A 104 AQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLL 181 (276)
T ss_dssp STTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEE
T ss_pred cCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEE
Confidence 112223333 3444444555566788888889887776532 112122222 24455555445566788
Q ss_pred EecCCCeEEEEeCCCc-------eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEE--EECCC
Q psy4393 170 SSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL--WDSKV 227 (247)
Q Consensus 170 ~~~~dg~i~v~d~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v--wd~~~ 227 (247)
..+..|..+...+..- +-...+ .....+..+....+...++..+.+|.+.. ++..+
T Consensus 182 ~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 182 VITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 8888998887765432 112222 22233433333234456777788888777 76544
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.52 E-value=23 Score=32.64 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=29.3
Q ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393 72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107 (247)
Q Consensus 72 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 107 (247)
+.+++..++..++++-+.|+.+++|++.+++++...
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 344555667789999999999999999999887654
No 361
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=72.07 E-value=45 Score=28.30 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=45.8
Q ss_pred EEEEECCCCCEEEEec-CCCeEEEEeCCCcee-----e----e--eeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393 157 SAVHFNRDGSLIVSSS-YDGLCRIWDTASGQC-----L----K--TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224 (247)
Q Consensus 157 ~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~-----~----~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 224 (247)
..+..+|||+++++++ .+.++.++|.+.... + . .-...-...-...+|+++|.-..+--.|..|.-|+
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence 3467899999887665 567899999874211 0 0 00111223345689999993333444799999999
Q ss_pred CCC
Q psy4393 225 SKV 227 (247)
Q Consensus 225 ~~~ 227 (247)
...
T Consensus 406 i~~ 408 (638)
T 3sbq_A 406 MEE 408 (638)
T ss_dssp HHH
T ss_pred ccH
Confidence 754
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.74 E-value=24 Score=32.60 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=28.8
Q ss_pred EEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee
Q psy4393 115 FCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL 149 (247)
Q Consensus 115 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 149 (247)
.++...++..++++-+.|+++|+|++.+++++...
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 34455567789999999999999999999987764
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=67.69 E-value=55 Score=27.71 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=39.7
Q ss_pred CeEEEEECCCCCEEEEEeC------------CCeEEEEecCCCeEEEEEecc-cCCeEEEEECCCCCEEEEEc
Q psy4393 29 AVSSVKFSPNGEWLASSSA------------DKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGS 88 (247)
Q Consensus 29 ~v~~~~~s~~~~~l~~~~~------------dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 88 (247)
....+.|+++|.+.+.... ...+..++..+++....+... ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4557899999987663221 114556666667665555433 34589999999999887663
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.39 E-value=41 Score=25.99 Aligned_cols=154 Identities=9% Similarity=0.030 Sum_probs=82.6
Q ss_pred CCeEEE-EECC--CCCEEEEEeCCCeEEEEecCCCe-------EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393 28 KAVSSV-KFSP--NGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97 (247)
Q Consensus 28 ~~v~~~-~~s~--~~~~l~~~~~dg~v~iw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 97 (247)
..|.++ .... +...++.++.+|.++.-....-. ....+.. ...+..+........++..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 344444 3332 46788889999999887654311 1111222 23344444444556677778888877776
Q ss_pred CC--Cce---------EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC-------eEEEeec--CCCCCeE
Q psy4393 98 LS--SGK---------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-------KCLKTLP--AHSDPVS 157 (247)
Q Consensus 98 ~~--~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~--~~~~~i~ 157 (247)
.. .-. ....+. ....|..+...+.+..++..+..|.++.-.+..- .-+..++ ...+.+-
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv 252 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV 252 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence 65 211 111122 2344655555555668888899999888775321 1122222 2123343
Q ss_pred EEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393 158 AVHFNRDGSLIVSSSYDGLCRIWDTA 183 (247)
Q Consensus 158 ~~~~~~~~~~l~~~~~dg~i~v~d~~ 183 (247)
.+....+...++..+.+|.+.-++..
T Consensus 253 ~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 253 GALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEeCCCccEEEEcCCCeEEEEehh
Confidence 33333333445555667766666544
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=60.79 E-value=25 Score=30.57 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=29.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393 198 PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST 236 (247)
Q Consensus 198 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 236 (247)
.|.++.+ +..++++-+.|.++|+|+.++..++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3554444 468999999999999999999987777655
No 366
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=60.63 E-value=59 Score=25.46 Aligned_cols=177 Identities=10% Similarity=-0.005 Sum_probs=81.5
Q ss_pred EEEEEeCCCeEEEEecCC-C-eEEEE-EecccCCeEEEEECC--CCCEEEEEcCCC----eEEEEECCCceEEEEEec--
Q psy4393 41 WLASSSADKLIKIWGAYD-G-KFEKT-ISGHKLGISDVAWSS--DSRLLVSGSDDK----TLKIWELSSGKCLKTLKG-- 109 (247)
Q Consensus 41 ~l~~~~~dg~v~iw~~~~-~-~~~~~-~~~~~~~v~~~~~~~--~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~-- 109 (247)
.|.++...| +.+++... + ..... .......|.++.+.| .+...+ +...+ .|... ...++....+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s-~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLM-AARTGHLGPTVFRS-DDGGGNWTEATRPP 100 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEE-SSTTSCCEECSBCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEE-EecCCCCCccEEEe-CCCCCCceECCccc
Confidence 566666666 55554432 2 22221 112245699999998 455444 44444 34332 222322222111
Q ss_pred ------------CCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCeEEEeec-------------------CCCCCe
Q psy4393 110 ------------HSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKCLKTLP-------------------AHSDPV 156 (247)
Q Consensus 110 ------------~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------------------~~~~~i 156 (247)
....|.++.+.|. ...+..+...+.|...+- .++....+. .....+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1124667888862 345555555555444421 222212111 012347
Q ss_pred EEEEECCC-CCEEEEecCCCeEEEEeCCCceeeeeeccC-C-----------CCCeEEEEECCC-CCEEEEEEcCCeEEE
Q psy4393 157 SAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDD-D-----------NPPVSFVKFSPN-GKYILAATLDNTLKL 222 (247)
Q Consensus 157 ~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~-----------~~~v~~~~~s~~-~~~l~~~~~dg~i~v 222 (247)
.+|.++|. ...++.+..++.+...+- .++....+... . ...+..++++|+ ...|+.++..+ |..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~ 257 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR 257 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence 78889873 344444544444444322 22222222110 0 123788999986 35666666444 444
Q ss_pred E
Q psy4393 223 W 223 (247)
Q Consensus 223 w 223 (247)
.
T Consensus 258 s 258 (394)
T 3b7f_A 258 M 258 (394)
T ss_dssp E
T ss_pred e
Confidence 3
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.65 E-value=33 Score=29.85 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=29.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec
Q psy4393 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 67 (247)
Q Consensus 28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 67 (247)
..|.++.+. ..++++-+.|+.+|+|+..++.+.....-
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 346665553 67899999999999999999987766543
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=53.59 E-value=68 Score=24.01 Aligned_cols=153 Identities=8% Similarity=-0.011 Sum_probs=82.9
Q ss_pred CCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCe------EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393 27 TKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGK------FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL 98 (247)
Q Consensus 27 ~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 98 (247)
...|..+.. + +...++.++.+|.++.....+-. ....+. ....+..+........++..+..|.+..+..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 345555543 3 45678888999999888754321 111122 2234555555555667888888888777764
Q ss_pred CC---------ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC-------CeEEEeecCCCCCeEEEEEC
Q psy4393 99 SS---------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-------GKCLKTLPAHSDPVSAVHFN 162 (247)
Q Consensus 99 ~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~~ 162 (247)
.. |.....+.. ...+..+...+++..++..+..|..+...+.. ++-+..+ ...+.+..+...
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~ 222 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI 222 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE
T ss_pred hhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe
Confidence 32 111112222 24455544444566788888999988887642 1122222 223344433332
Q ss_pred CCCCEEEEecCCCeEEE--EeCC
Q psy4393 163 RDGSLIVSSSYDGLCRI--WDTA 183 (247)
Q Consensus 163 ~~~~~l~~~~~dg~i~v--~d~~ 183 (247)
.....++..+.+|.+.. ++..
T Consensus 223 ~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 223 KEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SSEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCCEEEEEcCCCeEEEeeeCHH
Confidence 23334555566776666 6554
No 369
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.37 E-value=1.4e+02 Score=26.99 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee
Q psy4393 113 YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL 149 (247)
Q Consensus 113 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 149 (247)
.+.++...++..++++-+.|+.+|+|++.+++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3566777778889999999999999999999987664
No 370
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=50.81 E-value=92 Score=24.71 Aligned_cols=136 Identities=7% Similarity=0.059 Sum_probs=79.7
Q ss_pred eEEEEECCCc--eEEEEEecC------CccEEEEEEc---CC----CCEEEEe-eCCCCEEEEECCCCeEEEeec----C
Q psy4393 92 TLKIWELSSG--KCLKTLKGH------SNYVFCCNFN---PQ----SNLIVSG-SFDESVRIWDVRTGKCLKTLP----A 151 (247)
Q Consensus 92 ~i~v~d~~~~--~~~~~~~~~------~~~v~~~~~~---~~----~~~l~~~-~~d~~i~v~d~~~~~~~~~~~----~ 151 (247)
.|.+||+.+. +.++.+.-. .+.+..+.++ |. +.+++.. ...+.|.|+|+.+++..+... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6888999998 887766432 3446667766 22 2343333 345679999999887655441 1
Q ss_pred C--------------CCCeEEEEECCC----CCEEEEecCCC-eEEEEe---CCCce---eeeeeccCC-CCCeEEEEEC
Q psy4393 152 H--------------SDPVSAVHFNRD----GSLIVSSSYDG-LCRIWD---TASGQ---CLKTLIDDD-NPPVSFVKFS 205 (247)
Q Consensus 152 ~--------------~~~i~~~~~~~~----~~~l~~~~~dg-~i~v~d---~~~~~---~~~~~~~~~-~~~v~~~~~s 205 (247)
. ...+..|+++|+ ++.|+-....+ .+.-.. ++... ..+.+-... ...-..++.+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 1 125778888887 67776665544 222222 11111 111111111 1233456776
Q ss_pred -CCCCEEEEEEcCCeEEEEECCC
Q psy4393 206 -PNGKYILAATLDNTLKLWDSKV 227 (247)
Q Consensus 206 -~~~~~l~~~~~dg~i~vwd~~~ 227 (247)
.+|.++++--..+.|..|+.+.
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTS
T ss_pred CCCCeEEEEeccCCeEEEEeCCC
Confidence 5676666666788999999876
No 371
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=47.29 E-value=1e+02 Score=24.37 Aligned_cols=189 Identities=6% Similarity=0.029 Sum_probs=106.5
Q ss_pred CCCCeEEEEECCCCCEEE--EEeC-------------CCeEEEEecCCC--eEEEEEecc------cCCeEEEEEC---C
Q psy4393 26 HTKAVSSVKFSPNGEWLA--SSSA-------------DKLIKIWGAYDG--KFEKTISGH------KLGISDVAWS---S 79 (247)
Q Consensus 26 h~~~v~~~~~s~~~~~l~--~~~~-------------dg~v~iw~~~~~--~~~~~~~~~------~~~v~~~~~~---~ 79 (247)
+--.|.++...+++++=+ +|-. .-.|.+||+.+. +..+.+.-. ...+.++++. |
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP 164 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence 456788899998887533 2311 125788999988 777765421 2346777776 2
Q ss_pred C----CCEE-EEEcCCCeEEEEECCCceEEEEEe----cC--------------CccEEEEEEcCC----CCEEEEeeCC
Q psy4393 80 D----SRLL-VSGSDDKTLKIWELSSGKCLKTLK----GH--------------SNYVFCCNFNPQ----SNLIVSGSFD 132 (247)
Q Consensus 80 ~----~~~l-~~~~~d~~i~v~d~~~~~~~~~~~----~~--------------~~~v~~~~~~~~----~~~l~~~~~d 132 (247)
. +.++ ++-...+.|.++|+.+++..+.+. .. ...+..++++|+ ++.++...-.
T Consensus 165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls 244 (381)
T 3q6k_A 165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS 244 (381)
T ss_dssp TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence 2 2333 344456788899999887655431 00 124667788887 5666665443
Q ss_pred CCEEEEEC-----CCC---eEEEeecCC--CCCeEEEEEC-CCCCEEEEecCCCeEEEEeCCC-c---eeeeeeccCC-C
Q psy4393 133 ESVRIWDV-----RTG---KCLKTLPAH--SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-G---QCLKTLIDDD-N 196 (247)
Q Consensus 133 ~~i~v~d~-----~~~---~~~~~~~~~--~~~i~~~~~~-~~~~~l~~~~~dg~i~v~d~~~-~---~~~~~~~~~~-~ 196 (247)
+. ++|-+ +.. ..++.+... ...-..++++ .+|.++++--....|..|+..+ . +....+.... -
T Consensus 245 s~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l 323 (381)
T 3q6k_A 245 AI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRF 323 (381)
T ss_dssp CS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTC
T ss_pred CC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCc
Confidence 32 23322 221 112222111 1233456775 6787777777888999999875 1 1122222222 1
Q ss_pred CCeEEEEECCCCCEEEEEE
Q psy4393 197 PPVSFVKFSPNGKYILAAT 215 (247)
Q Consensus 197 ~~v~~~~~s~~~~~l~~~~ 215 (247)
.-...+++.++|.+.+...
T Consensus 324 ~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 324 VFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CSEEEEEECTTSCEEEEEC
T ss_pred cccCeEEECCCCeEEEEEC
Confidence 2346677777776545443
No 372
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=47.16 E-value=79 Score=26.10 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=36.2
Q ss_pred CEEEEeeCCCCEEEEEC-CCCe-------EEEeecC--CCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393 124 NLIVSGSFDESVRIWDV-RTGK-------CLKTLPA--HSDPVSAVHFNRDGSLIVSSSYDGLCRI 179 (247)
Q Consensus 124 ~~l~~~~~d~~i~v~d~-~~~~-------~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~v 179 (247)
..+..|+.+|.|+-.-+ ..+. .+..+.. ...+|..|.++++..+|++++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 45777888998754433 2211 2223332 3468899999999999999988776554
No 373
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=46.90 E-value=73 Score=26.31 Aligned_cols=56 Identities=9% Similarity=0.101 Sum_probs=35.6
Q ss_pred EEEEecCCCeEEEEeCC-Cce-------eeeeecc-CCCCCeEEEEECCCCCEEEEEEcCCeEEE
Q psy4393 167 LIVSSSYDGLCRIWDTA-SGQ-------CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKL 222 (247)
Q Consensus 167 ~l~~~~~dg~i~v~d~~-~~~-------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 222 (247)
.++.|+.+|.|.-.-+. ... .+..+.. ....+|..+.+++++++|+.++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 56778888876544332 211 1112221 23467889999999999999998876665
No 374
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=46.25 E-value=99 Score=23.77 Aligned_cols=187 Identities=10% Similarity=0.075 Sum_probs=94.6
Q ss_pred CCCCEEEEEeCCCeEEEEecCC----CeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC---CC------ceE
Q psy4393 37 PNGEWLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL---SS------GKC 103 (247)
Q Consensus 37 ~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~---~~------~~~ 103 (247)
|+...+++.+.+|.|+--.... +.....+.. ...+..+........++..+..|.+.-+.. .. |.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 4566777788888887654321 000011111 222333333444556666667776554443 21 221
Q ss_pred EE---EEecCCccEEEE-EEcC--CCCEEEEeeCCCCEEEEECCC--------CeEEEeecCCCCCeEEEEECCCCCEEE
Q psy4393 104 LK---TLKGHSNYVFCC-NFNP--QSNLIVSGSFDESVRIWDVRT--------GKCLKTLPAHSDPVSAVHFNRDGSLIV 169 (247)
Q Consensus 104 ~~---~~~~~~~~v~~~-~~~~--~~~~l~~~~~d~~i~v~d~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~ 169 (247)
+. .+. ....|..+ ...+ +...++..+.+|.++-..+.. +.....+... +.+-.+........++
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 11 111 12334443 3332 256788889999999887642 2111123322 3444444444455677
Q ss_pred EecCCCeEEEEeCCCcee-------eeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECC
Q psy4393 170 SSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSK 226 (247)
Q Consensus 170 ~~~~dg~i~v~d~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~ 226 (247)
..+.+|.+..+....-.. .+.........|..+..-+++. .|++.+..|..+..+..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 777888887776543211 1111112233344443333344 78888888888877653
No 375
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=45.56 E-value=98 Score=23.53 Aligned_cols=186 Identities=12% Similarity=0.065 Sum_probs=93.9
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCeEEE---------EEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC---CC----
Q psy4393 37 PNGEWLASSSADKLIKIWGAYDGKFEK---------TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL---SS---- 100 (247)
Q Consensus 37 ~~~~~l~~~~~dg~v~iw~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~---~~---- 100 (247)
|+...+++.+.+|.|+--....-+... .+.. ...+..+........++..+..|.+.-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345567778888888766543211111 1111 222333333334455666667776554443 21
Q ss_pred --ceEEE---EEecCCccEEEEEE-c--CCCCEEEEeeCCCCEEEEECCC-------CeEEEeecCCCCCeEEEEECCCC
Q psy4393 101 --GKCLK---TLKGHSNYVFCCNF-N--PQSNLIVSGSFDESVRIWDVRT-------GKCLKTLPAHSDPVSAVHFNRDG 165 (247)
Q Consensus 101 --~~~~~---~~~~~~~~v~~~~~-~--~~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~ 165 (247)
|..+. .+. ....|..+.. . .+...++..+..|.++-..+.. +.....+..+ +.+-.+......
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 11111 122 2234444432 2 3456788889999999887642 2111223333 344444443444
Q ss_pred CEEEEecCCCeEEEEeCCCcee-------eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393 166 SLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225 (247)
Q Consensus 166 ~~l~~~~~dg~i~v~d~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 225 (247)
..++..+.+|.+..++...-.. .+.+.......|..+..-+++..|++.+..|.++-.+.
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~ 224 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAV 224 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence 5566677788877776543211 11111122334555554455667888898998888765
No 376
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=44.40 E-value=49 Score=27.70 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=40.7
Q ss_pred eEEEEECC--CCCEEEEecCCCeEEEEeCCCc----eeeeeec-cCCCCCeE-EEEECCCCCEEEEEEcCCeEEE
Q psy4393 156 VSAVHFNR--DGSLIVSSSYDGLCRIWDTASG----QCLKTLI-DDDNPPVS-FVKFSPNGKYILAATLDNTLKL 222 (247)
Q Consensus 156 i~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~-~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~v 222 (247)
.++++... +...++.|+.+|.|.-..+... .....+. .....+|. .+.+++++.+|+.++.++.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 34444433 2346778888997765544322 1122222 12245674 7889999999999998877666
No 377
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=40.57 E-value=80 Score=26.34 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=40.9
Q ss_pred eEEEEECC--CCCEEEEecCCCeEEEEeCC-Cc--eeeeeeccCCCCCe-EEEEECCCCCEEEEEEcCCeEEE
Q psy4393 156 VSAVHFNR--DGSLIVSSSYDGLCRIWDTA-SG--QCLKTLIDDDNPPV-SFVKFSPNGKYILAATLDNTLKL 222 (247)
Q Consensus 156 i~~~~~~~--~~~~l~~~~~dg~i~v~d~~-~~--~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~v 222 (247)
.+.++... ....++.|+.+|.|.-.-+. .. .....+......+| ..+.++++..+|+.++.++.++|
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 44444432 22356678888987644332 21 11222222344566 47889999999999998888777
No 378
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=35.47 E-value=1.3e+02 Score=25.47 Aligned_cols=57 Identities=2% Similarity=0.004 Sum_probs=36.2
Q ss_pred CEEEEecCCCeEEEEeC-CCc----e-eeeeec-cCCCCCeEEEEECCCCCEEEEEEcCCeEEE
Q psy4393 166 SLIVSSSYDGLCRIWDT-ASG----Q-CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKL 222 (247)
Q Consensus 166 ~~l~~~~~dg~i~v~d~-~~~----~-~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 222 (247)
..++.|+.+|.|.-.-. ..+ . .+..+. .....+|..+.++++..+|+.++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 35677888887654322 222 1 111121 123467888999999999999998877766
No 379
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=35.36 E-value=1.7e+02 Score=24.81 Aligned_cols=56 Identities=4% Similarity=0.038 Sum_probs=35.3
Q ss_pred CEEEEeeCCCCEEEEEC-CCC----e-EEEeec--CCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393 124 NLIVSGSFDESVRIWDV-RTG----K-CLKTLP--AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 179 (247)
Q Consensus 124 ~~l~~~~~d~~i~v~d~-~~~----~-~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 179 (247)
..+..|+.+|.|+-.-+ ..+ . .+..+. ....+|..|.++++...|++++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 46777888898764333 222 1 122232 23567899999999888888876655443
No 380
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=34.17 E-value=1.2e+02 Score=26.06 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=36.9
Q ss_pred EEEEecCCCeEEEE-eCCCce-eeeee-ccCCCCCeEEEEECCCC--CEEEEEEcCCeEEE
Q psy4393 167 LIVSSSYDGLCRIW-DTASGQ-CLKTL-IDDDNPPVSFVKFSPNG--KYILAATLDNTLKL 222 (247)
Q Consensus 167 ~l~~~~~dg~i~v~-d~~~~~-~~~~~-~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~v 222 (247)
.++.|+.+|.|.-. ...... .+... ......+|..+.++++. ++|++++.++.++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 67788889976433 333322 12211 12334678889999988 99999998887777
No 381
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=32.56 E-value=87 Score=26.19 Aligned_cols=57 Identities=9% Similarity=0.151 Sum_probs=36.3
Q ss_pred CCEEEEeeCCCCEEEEECCCC----eEEEeecC--CCCCeE-EEEECCCCCEEEEecCCCeEEE
Q psy4393 123 SNLIVSGSFDESVRIWDVRTG----KCLKTLPA--HSDPVS-AVHFNRDGSLIVSSSYDGLCRI 179 (247)
Q Consensus 123 ~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~--~~~~i~-~~~~~~~~~~l~~~~~dg~i~v 179 (247)
...++.|..+|.|+-..+..+ ..+..+.. ...+|. .|.+++++.+|++++.++.++|
T Consensus 413 ~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 413 YSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 346777888998765444322 12333322 245775 8999999999999887765544
No 382
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=30.47 E-value=1.5e+02 Score=25.68 Aligned_cols=56 Identities=9% Similarity=0.157 Sum_probs=35.7
Q ss_pred EEEEecCCCeEE-EEeCCCce-------eeeee-ccCCCCCeEEEEECCCCCEEEEEEcCCeEEE
Q psy4393 167 LIVSSSYDGLCR-IWDTASGQ-------CLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKL 222 (247)
Q Consensus 167 ~l~~~~~dg~i~-v~d~~~~~-------~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 222 (247)
.++.|+.+|.|. +.-..... .+..+ ......+|..+.+++++++|++++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 567788888764 32221111 11111 1234567888999999999999999887776
No 383
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=30.46 E-value=2.6e+02 Score=24.06 Aligned_cols=55 Identities=7% Similarity=0.217 Sum_probs=35.4
Q ss_pred CEEEEeeCCCCEE-EEECCCCeE-EEeec--CCCCCeEEEEECCCC--CEEEEecCCCeEE
Q psy4393 124 NLIVSGSFDESVR-IWDVRTGKC-LKTLP--AHSDPVSAVHFNRDG--SLIVSSSYDGLCR 178 (247)
Q Consensus 124 ~~l~~~~~d~~i~-v~d~~~~~~-~~~~~--~~~~~i~~~~~~~~~--~~l~~~~~dg~i~ 178 (247)
..++.|..+|.|+ +........ +..+. ....+|..|.++++. .+|++++.++.++
T Consensus 416 tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~ 476 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQ 476 (663)
T ss_dssp EEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEE
Confidence 3677788888864 434443322 22222 234688899999987 8888888776543
No 384
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=25.37 E-value=3.5e+02 Score=23.76 Aligned_cols=145 Identities=14% Similarity=0.179 Sum_probs=68.8
Q ss_pred CCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCeEEEEEec-------ccCCeEEEEECCCC-CEEEEEcCCCe----E
Q psy4393 27 TKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISG-------HKLGISDVAWSSDS-RLLVSGSDDKT----L 93 (247)
Q Consensus 27 ~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~-~~l~~~~~d~~----i 93 (247)
.+.|.+++++|.. ..+++++..+.|...+- .++.-..+.. ....+.++++.|.. +.++.+..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999963 45666666666654432 2222122221 12468999998843 34444432211 2
Q ss_pred EEE-ECCCceEEEEEecC-------Cc--cEEEEEEcCC-CCEEEEeeCCCCEEEEECC-CCeEEEeecC------CCCC
Q psy4393 94 KIW-ELSSGKCLKTLKGH-------SN--YVFCCNFNPQ-SNLIVSGSFDESVRIWDVR-TGKCLKTLPA------HSDP 155 (247)
Q Consensus 94 ~v~-d~~~~~~~~~~~~~-------~~--~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~------~~~~ 155 (247)
.|| ....++.-..+... .. .+..+.++|. ...++.+...+.| |-.. .|+.-..+.. ....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCCC
Confidence 233 33334433332210 01 2344666664 3345555433332 3222 2222222211 1245
Q ss_pred eEEEEECCC-CCEEEEecCC
Q psy4393 156 VSAVHFNRD-GSLIVSSSYD 174 (247)
Q Consensus 156 i~~~~~~~~-~~~l~~~~~d 174 (247)
+..+.++|. +..++++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 778888884 3455555544
No 385
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=25.19 E-value=1.9e+02 Score=24.96 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=35.6
Q ss_pred CEEEEeeCCCCEE-EEECCCCe-------EEEeec--CCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393 124 NLIVSGSFDESVR-IWDVRTGK-------CLKTLP--AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 179 (247)
Q Consensus 124 ~~l~~~~~d~~i~-v~d~~~~~-------~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 179 (247)
..++.|+.+|.|+ +.-...+. .+..+. ....+|..|.++++..+|++++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 3567788888865 33222211 122222 34567899999999999999988776544
No 386
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=25.03 E-value=2e+02 Score=24.89 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=36.6
Q ss_pred CEEEEecCCCeEEEEeCCC-c---eeeeee-ccCCCCCe-EEEEECCCCCEEEEEEcCCeEEE
Q psy4393 166 SLIVSSSYDGLCRIWDTAS-G---QCLKTL-IDDDNPPV-SFVKFSPNGKYILAATLDNTLKL 222 (247)
Q Consensus 166 ~~l~~~~~dg~i~v~d~~~-~---~~~~~~-~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~v 222 (247)
..++.|+.+|.|.-.-+.. . ..+..+ ......+| ..+.++++..+|+.++.++.++|
T Consensus 413 tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 413 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp EEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 4567888899876544332 1 122222 12234455 57889999999999998877776
No 387
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=23.47 E-value=3.7e+02 Score=23.37 Aligned_cols=194 Identities=14% Similarity=0.133 Sum_probs=97.4
Q ss_pred eEEEE-ECCCCCEEEEE-eCC----CeEEEEecCCCeEEEE-Ee-cccC------CeEEEEECCCCCEEEEEcC------
Q psy4393 30 VSSVK-FSPNGEWLASS-SAD----KLIKIWGAYDGKFEKT-IS-GHKL------GISDVAWSSDSRLLVSGSD------ 89 (247)
Q Consensus 30 v~~~~-~s~~~~~l~~~-~~d----g~v~iw~~~~~~~~~~-~~-~~~~------~v~~~~~~~~~~~l~~~~~------ 89 (247)
...+. ++|++++++.+ +.. ..++++|+.+++.+.. +. .... ....++|. +.+.++.+..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCc
Confidence 44555 89999987653 222 3689999988765421 11 0000 11234776 3344443321
Q ss_pred -----CCeEEEEECCCce--EEEEEecCCccE-EEEEEcCCCC-----EEEEeeCC---CCEEEEECCC--CeEEEeecC
Q psy4393 90 -----DKTLKIWELSSGK--CLKTLKGHSNYV-FCCNFNPQSN-----LIVSGSFD---ESVRIWDVRT--GKCLKTLPA 151 (247)
Q Consensus 90 -----d~~i~v~d~~~~~--~~~~~~~~~~~v-~~~~~~~~~~-----~l~~~~~d---~~i~v~d~~~--~~~~~~~~~ 151 (247)
...++.|.+-+.. -...+.+....+ .....++++. .+++.+.+ ..+.+.|+.. ++ +..+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeec
Confidence 2468888776532 222343333322 2344556555 24443322 3456666653 33 223322
Q ss_pred CCCCeEEEEECCCCCEEEEe----------cCCCeEEEEeCCCce-------eeee-eccCCCCCeEEEEECCCCCEEEE
Q psy4393 152 HSDPVSAVHFNRDGSLIVSS----------SYDGLCRIWDTASGQ-------CLKT-LIDDDNPPVSFVKFSPNGKYILA 213 (247)
Q Consensus 152 ~~~~i~~~~~~~~~~~l~~~----------~~dg~i~v~d~~~~~-------~~~~-~~~~~~~~v~~~~~s~~~~~l~~ 213 (247)
.... . +..+.++.+++.. ...+.+.+.|+.+.. .... +.......+..+.+..+ .++++
T Consensus 289 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA-T-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC-E-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc-e-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 2221 1 2233455554432 135678888876642 1222 22333445677888876 56666
Q ss_pred EEcCC--eEEEEECCCc
Q psy4393 214 ATLDN--TLKLWDSKVV 228 (247)
Q Consensus 214 ~~~dg--~i~vwd~~~~ 228 (247)
...++ .+.++|...+
T Consensus 366 ~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENE 382 (711)
T ss_dssp EEETTEEEEEEECEETT
T ss_pred EEECCEEEEEEEECCCC
Confidence 66666 5677775443
No 388
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.26 E-value=1.5e+02 Score=18.45 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=12.0
Q ss_pred EEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393 202 VKFSPNGKYILAATLDNTLKLWDSKV 227 (247)
Q Consensus 202 ~~~s~~~~~l~~~~~dg~i~vwd~~~ 227 (247)
+.+..+|.+++... ++.+ +|...+
T Consensus 61 l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 61 MRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp EEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEeCCCcEEEECC-CCCE-EEECCC
Confidence 45566666555432 3333 566544
No 389
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=21.96 E-value=1.5e+02 Score=18.23 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=23.5
Q ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEe
Q psy4393 74 DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129 (247)
Q Consensus 74 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 129 (247)
.+.+..||++++.... +. .+|...+.. . .....+...++|++++.+
T Consensus 54 ~L~l~~dGnLvL~d~~-~~-~vWss~t~~-------~-~~~~~l~L~ddGNlVly~ 99 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSS-GR-SLWASHSTR-------G-SGNYILILQDDGNVIIYG 99 (105)
T ss_dssp EEEECTTSCEEEECTT-CC-EEEECCCCC-------C-SSCEEEEECTTSCEEEEE
T ss_pred EEEEeCCccEEEECCC-cE-EEEEecCCC-------C-CCCEEEEEeCCCeEEEEC
Confidence 4667788876665433 33 257654321 0 111234456667666653
Done!