RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4393
(247 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 228 bits (583), Expect = 8e-75
Identities = 91/206 (44%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
L+ TL GHT V+ V FSP+G+ LA+ S D IK+W G+ +T+ GH + DVA S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
+D L SGS DKT+++W+L +G+C++TL GH++YV F+P ++ S S D+++++W
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
DV TGKCL TL H+D V++V F+ DG+ + SSS DG ++WD +G+C+ TL
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-E 179
Query: 199 VSFVKFSPNGKYILAATLDNTLKLWD 224
V+ V FSP+G+ +L+++ D T+KLWD
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWD 205
Score = 211 bits (538), Expect = 6e-68
Identities = 88/208 (42%), Positives = 138/208 (66%), Gaps = 1/208 (0%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
L TL GHT V V S +G +LAS S+DK I++W G+ +T++GH +S VA+S
Sbjct: 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS 102
Query: 79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
D R+L S S DKT+K+W++ +GKCL TL+GH+++V F+P + S S D ++++W
Sbjct: 103 PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
D+RTGKC+ TL H+ V++V F+ DG ++SSS DG ++WD ++G+CL TL +N
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN-G 221
Query: 199 VSFVKFSPNGKYILAATLDNTLKLWDSK 226
V+ V FSP+G + + + D T+++WD +
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLR 249
Score = 210 bits (536), Expect = 1e-67
Identities = 88/203 (43%), Positives = 130/203 (64%), Gaps = 1/203 (0%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
TL GHT VSSV FSP+G L+SSS DK IK+W GK T+ GH ++ VA+S D
Sbjct: 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
+ S S D T+K+W+L +GKC+ TL GH+ V F+P ++S S D ++++WD+
Sbjct: 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
TGKCL TL H + V++V F+ DG L+ S S DG R+WD +G+C++TL N V+
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-SVTS 266
Query: 202 VKFSPNGKYILAATLDNTLKLWD 224
+ +SP+GK + + + D T+++WD
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289
Score = 180 bits (459), Expect = 5e-56
Identities = 76/167 (45%), Positives = 109/167 (65%)
Query: 15 PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 74
TL GHT V+SV FSP+G ++ASSS D IK+W GK T++GH ++
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 75 VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
VA+S D L+S S D T+K+W+LS+GKCL TL+GH N V F+P L+ SGS D +
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242
Query: 135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
+R+WD+RTG+C++TL H++ V+++ ++ DG + S S DG RIWD
Sbjct: 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 114 bits (285), Expect = 2e-29
Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 9/227 (3%)
Query: 8 SSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-- 65
S S + L GH +++S+ FSP+GE L S S+D IK+W +G+
Sbjct: 46 LSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLE 105
Query: 66 SGHKLGISDVAWSS---DSRLLVSGSDDKTLKIWELSS-GKCLKTLKGHSNYVFCCNFNP 121
H +S +A SS +S LL S S D T+K+W+LS+ GK ++TL+GHS V F+P
Sbjct: 106 GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP 165
Query: 122 QSNLIVSGS-FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRI 179
L+ SGS D ++++WD+RTGK L TL H+DPVS++ F+ DG LI S S DG R+
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225
Query: 180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
WD ++G+ L++ + + V FSP+G + + + D T++LWD +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLR 271
Score = 114 bits (284), Expect = 3e-29
Identities = 91/226 (40%), Positives = 128/226 (56%), Gaps = 7/226 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 80
TLAGHT VSS+ FSP+G +AS S+D I++W GK ++ ++S D
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252
Query: 81 SRLLVSGSDDKTLKIWEL-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
LL SGS D T+++W+L SS L+TL GHS+ V F+P L+ SGS D +VR+WD
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312
Query: 140 VRTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQCLKTLIDDDN 196
+ TGK TL H PVS++ F+ DGSL+VS S DG R+WD +G+ LKTL N
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNY 242
V V FSP+G+ + + + D T++LWD + +
Sbjct: 373 --VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416
Score = 112 bits (280), Expect = 1e-28
Identities = 84/208 (40%), Positives = 122/208 (58%), Gaps = 8/208 (3%)
Query: 26 HTKAVSSVKF-SPNGEWLAS--SSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 81
H +VS + SP+G + SS D +K+W GK +T+ GH ++ +A+S D
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167
Query: 82 RLLVSGSD-DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 139
+LL SGS D T+K+W+L +GK L TL GH++ V F+P LI SGS D ++R+WD
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227
Query: 140 VRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
+ TGK L+ TL HSD V + F+ DGSL+ S S DG R+WD S L + +
Sbjct: 228 LSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286
Query: 199 VSFVKFSPNGKYILAATLDNTLKLWDSK 226
V V FSP+GK + + + D T++LWD +
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDLE 314
Score = 110 bits (276), Expect = 4e-28
Identities = 91/223 (40%), Positives = 135/223 (60%), Gaps = 7/223 (3%)
Query: 12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKL 70
+ +L+ TL+GH+ +V S FSP+G LAS S+D I++W +T+SGH
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC--LKTLKGHSNYVFCCNFNPQ-SNLIV 127
+ VA+S D +LL SGS D T+++W+L +GK TLKGH V +F+P S L+
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345
Query: 128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
GS D ++R+WD+RTGK LKTL HS V +V F+ DG ++ S S DG R+WD ++G
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404
Query: 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230
L+ L + V+ + FSP+GK + + + DNT++LWD K
Sbjct: 405 LRNLDGHTSR-VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
Score = 94.8 bits (234), Expect = 3e-22
Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 17/211 (8%)
Query: 12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHK 69
+ + + L TL+GH+ +V SV FSP+G+ LAS S+D +++W GK T+ GH+
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE 328
Query: 70 LGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 128
+S +++S D S L+ GSDD T+++W+L +GK LKTL+GHSN V +F+P ++ S
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSS 387
Query: 129 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 188
GS D +VR+WD+ TG L+ L H+ V+++ F+ DG + S S D R+WD +
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT---- 443
Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNT 219
+ V FSP+GK + + + D +
Sbjct: 444 ---------SLKSVSFSPDGKVLASKSSDLS 465
Score = 88.6 bits (218), Expect = 3e-20
Identities = 74/234 (31%), Positives = 132/234 (56%), Gaps = 13/234 (5%)
Query: 1 MNLSNAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 60
+ +++ SS + K + + ++ ++ S+ S +G L + +D L+ +
Sbjct: 1 LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPD----L 56
Query: 61 FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG-KCLKTLKGHSNY----VF 115
+ GH+ I+ +A+S D LL+SGS D T+K+W+L +G K +K+L+G + +
Sbjct: 57 SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116
Query: 116 CCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSY 173
+ + S L+ S S D +V++WD+ T GK ++TL HS+ V+++ F+ DG L+ S SS
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176
Query: 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDSK 226
DG ++WD +G+ L TL PVS + FSP+G ++A + D T++LWD
Sbjct: 177 DGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 71.3 bits (174), Expect = 3e-14
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 81
LA +K S +ASS+ + ++++W + + H+ + + +SS D
Sbjct: 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADP 588
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDV 140
LL SGSDD ++K+W ++ G + T+K +N + C F +S ++ GS D V +D+
Sbjct: 589 TLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDL 647
Query: 141 RTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD---TASG 185
R K L T+ HS VS V F D S +VSSS D ++WD + SG
Sbjct: 648 RNPKLPLCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMSISG 695
Score = 31.2 bits (70), Expect = 0.56
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
T+ GH+K VS V+F + L SSS D +K+W
Sbjct: 656 TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLW 687
Score = 30.1 bits (67), Expect = 1.3
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLW 223
S + SS+++G+ ++WD A Q L T + + V + +S +LA+ + D ++KLW
Sbjct: 546 SQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 63.8 bits (155), Expect = 1e-11
Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 67 GHKLGISDVAWSS-DSRLLVSGSDDKTLKIWEL-------SSGKCLKTLKGHSNYVFCCN 118
G + I DVA++ D + L + S+D T+ W + + + L+GH+ V +
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132
Query: 119 FNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
F+P + N++ S D V +WDV GK ++ + HSD ++++ +N DGSL+ ++S D
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192
Query: 178 RIWDTASG 185
I D G
Sbjct: 193 NIIDPRDG 200
Score = 59.5 bits (144), Expect = 3e-10
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 23 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
L GHTK V V F P+ LAS+ AD ++ +W GK + I H I+ + W+ D
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180
Query: 82 RLLVSGSDDKTLKIWELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES----VR 136
LL + S DK L I + G + +++ H S C + + +LI++ +S +
Sbjct: 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM 240
Query: 137 IWDVR 141
+WD R
Sbjct: 241 LWDTR 245
Score = 51.0 bits (122), Expect = 2e-07
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 23 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS-------GH--KLGI 72
L G + V F+P + + L ++S D I WG + + IS GH K+GI
Sbjct: 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI 130
Query: 73 SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 132
S+ + +L S D + +W++ GK ++ +K HS+ + +N +L+ + S D
Sbjct: 131 VSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD 189
Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVS--AVHFNRDGSLI---VSSSYDGLCRIWDTASGQC 187
+ + I D R G + ++ AH+ S + R +I S S +WDT
Sbjct: 190 KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249
Query: 188 LKTLIDDDNPPVSFVKF 204
+ +D D F+ F
Sbjct: 250 PYSTVDLDQSSALFIPF 266
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 53.1 bits (128), Expect = 5e-10
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
SG+ LKTLKGH+ V F+P + SGS D ++++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 51.9 bits (125), Expect = 1e-09
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
+G+ LKTL H+ PV++V F+ DG + S S DG ++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 48.8 bits (117), Expect = 2e-08
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 58 DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97
G+ KT+ GH ++ VA+S D + L SGSDD T+K+W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 47.3 bits (113), Expect = 7e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
L TL GHT V+SV FSP+G++LAS S D IK+W
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 37.7 bits (88), Expect = 2e-04
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
SG+ LKTL P V+ V FSP+GKY+ + + D T+KLWD
Sbjct: 1 SGELLKTLKGHTGP-VTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 51.6 bits (124), Expect = 2e-09
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
GK L+TLKGH+ V F+P NL+ SGS D +VR+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 51.2 bits (123), Expect = 3e-09
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 143 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
GK L+TL H+ PV++V F+ DG+L+ S S DG R+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 48.5 bits (116), Expect = 2e-08
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
L TL GHT V+SV FSP+G LAS S D +++W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 48.1 bits (115), Expect = 3e-08
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 59 GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW 96
GK +T+ GH ++ VA+S D LL SGSDD T+++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 36.6 bits (85), Expect = 4e-04
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
G+ L+TL P V+ V FSP+G + + + D T+++WD
Sbjct: 1 GKLLRTLKGHTGP-VTSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 46.5 bits (110), Expect = 7e-06
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 65 ISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWEL----SSGKCLK----TLKGHSNYVF 115
+ GH I D+ ++ S +L SGS+D T+++WE+ S K +K LKGH +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 116 CCNFNPQSNLIV-SGSFDESVRIWDVRTGK 144
++NP + I+ S FD V IWD+ K
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159
Score = 41.9 bits (98), Expect = 2e-04
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 107 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTG----------KCLKTLPAHSDP 155
LKGH++ + FNP S ++ SGS D ++R+W++ +C+ L H
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI--LKGHKKK 127
Query: 156 VSAVHFNRDGSLIV-SSSYDGLCRIWD 181
+S + +N I+ SS +D IWD
Sbjct: 128 ISIIDWNPMNYYIMCSSGFDSFVNIWD 154
>gnl|CDD|226021 COG3490, COG3490, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 366
Score = 37.1 bits (86), Expect = 0.005
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 35 FSPNGEWLASSSADKLIK--IWGAYDG--KFEKT--ISGHKLGISDVAWSSDSRLLV 85
FSP+G L ++ D + G YD F++ S H +G +V +D R LV
Sbjct: 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLV 177
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 36.4 bits (84), Expect = 0.010
Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 27/190 (14%)
Query: 30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
VS +++SP+G LA S D ++ Y I+ G+SD WS D + +
Sbjct: 62 VSELRWSPDGSVLAFVSTDG-GRVAQLYLVDVGGLITKTAFGVSDARWSPDGDRIAFLTA 120
Query: 90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL 149
+ K G + + + G E ++ V L L
Sbjct: 121 EGASK------------RDGGDHLFV-----DRLPVWFDGRGGERSDLYVVDIESKLIKL 163
Query: 150 PAHSDPVSAVHFNRDGSLIVSSSYDGLC-------RIWDTASGQCLKTLIDDDNPPVSFV 202
+ V + + DG L+ S D + +G + +S +
Sbjct: 164 GLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG--ELESLTPGEGSISKL 221
Query: 203 KFSPNGKYIL 212
F +GK I
Sbjct: 222 AFDADGKSIA 231
>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A.
This is a family of eukaryotic translation initiation
factors.
Length = 194
Score = 34.5 bits (80), Expect = 0.024
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 72 ISDVAWSSDSR--LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
I D AWS + + ++ G + ++L + N +F ++P L++
Sbjct: 62 IHDFAWSPNGKEFAVIYGYMPAKITFFDLKGNVIHSLGEQPRNTIF---WSPFGRLVLLA 118
Query: 130 SFDE---SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS------YDGLCRIW 180
F + WDV+ K + T S+ ++ DG ++++ D +IW
Sbjct: 119 GFGNLAGQIEFWDVKNKKKIAT-AEASNATD-CEWSPDGRYFLTATTSPRLRVDNGFKIW 176
Query: 181 DTASGQCL 188
SG+ +
Sbjct: 177 -HYSGKLV 183
Score = 34.5 bits (80), Expect = 0.026
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 120 NPQSN--LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL- 176
+P ++ G + +D++ G + +L P + + ++ G L++ + + L
Sbjct: 68 SPNGKEFAVIYGYMPAKITFFDLK-GNVIHSLGEQ--PRNTIFWSPFGRLVLLAGFGNLA 124
Query: 177 --CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL------DNTLKLW 223
WD + + + T + + ++SP+G+Y L AT DN K+W
Sbjct: 125 GQIEFWDVKNKKKIATA---EASNATDCEWSPDGRYFLTATTSPRLRVDNGFKIW 176
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 34.6 bits (79), Expect = 0.038
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 199 VSFVKFSPNGKYILAATLDNTLKLWDSK-----VVTPAIICSTPLNLNYFYRN 246
+S KFS NG+YIL+ T+K+WD + T + C LN Y N
Sbjct: 283 ISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334
>gnl|CDD|234377 TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated
beta-propeller protein. Members of this protein family
consist of seven repeats each of the YVTN family
beta-propeller repeat (see TIGR02276). Members occur
invariably as part of a transport operon that is
associated with PQQ-dependent catabolism of alcohols
such as phenylethanol.
Length = 300
Score = 33.9 bits (78), Expect = 0.067
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTG 143
VS D T+ + + ++ + +T F+ L+ V S ++V++ D TG
Sbjct: 5 VSNEKDNTISVIDTATLEVTRTFPV-GQRPRGITFSKDGKLLYVCASDSDTVQVIDPATG 63
Query: 144 KCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF- 201
+ L TLP+ DP + A+H N L +++ D L + D + + L + PV
Sbjct: 64 EVLHTLPSGPDPELFALHPN-GKILYIANEDDALVTVIDIETRKVLAEI------PVGVE 116
Query: 202 ---VKFSPNGKYI 211
+ SP+GK +
Sbjct: 117 PEGMAVSPDGKIV 129
Score = 28.9 bits (65), Expect = 2.2
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 158 AVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLI-------DDDNPPVSFVKFSPNGK 209
F DG L VSS G + D A+ + +K + + PV ++ + +GK
Sbjct: 161 FAEFTADGKELWVSSEIGGTVTVIDVATRKVIKKITFEIPGVHPEKVQPVG-IRLTKDGK 219
Query: 210 YILAA 214
A
Sbjct: 220 TAFVA 224
Score = 28.9 bits (65), Expect = 2.8
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 19/162 (11%)
Query: 80 DSRLLVSGSDDKTLKIWELSSGKCLKTL-KGHSNYVFCCNFNPQSNLI-VSGSFDESVRI 137
L V SD T+++ + ++G+ L TL G +F +P ++ ++ D V +
Sbjct: 42 GKLLYVCASDSDTVQVIDPATGEVLHTLPSGPDPELFA--LHPNGKILYIANEDDALVTV 99
Query: 138 WDVRTGKCLKTLPAHSDP----VSAVHFNRDGSLIVSSSYDGLCRIW-DTASGQCLKTLI 192
D+ T K L +P +P VS DG ++V++S W DTA+ + + +
Sbjct: 100 IDIETRKVLAEIPVGVEPEGMAVSP-----DGKIVVNTSETTNMAHWIDTATHEIVDNTL 154
Query: 193 DDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDSKVVTPAII 233
D P F +F+ +GK + + + T+ + D V T +I
Sbjct: 155 VDQRP--RFAEFTADGKELWVSSEIGGTVTVID--VATRKVI 192
>gnl|CDD|236624 PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane
subunit; Provisional.
Length = 987
Score = 32.6 bits (74), Expect = 0.22
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG 87
K+V++V+ E LA A + + + +L ++ +D+ S
Sbjct: 126 KSVTTVE-----ELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQL-NDATFAASP 179
Query: 88 SDDKTLK 94
+ KTL+
Sbjct: 180 -EGKTLR 185
>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer
transport system [Intracellular trafficking and
secretion].
Length = 425
Score = 30.5 bits (69), Expect = 0.78
Identities = 46/189 (24%), Positives = 70/189 (37%), Gaps = 28/189 (14%)
Query: 42 LASSSADKLIK-IW-GAYDGKFEKTISGHKLGISDVAWSSDSRLLV----SGSDDKTLKI 95
+A S L + G YDG ++ ++ I AWS D + L +
Sbjct: 163 VAESDGGPLPYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYY 222
Query: 96 WELSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVRIW--DVRTG--KCL 146
+L++GK L + N N P S L S S D S I+ D+ L
Sbjct: 223 LDLNTGKRPVILNFNGN-----NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL 277
Query: 147 KTLPAHSDPVSAVHFNRDGSLIV-SSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVK 203
+ S ++ DGS IV +S G +I+ D Q T + S
Sbjct: 278 TNGFGINTSPS---WSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTFSGGGNSNPV 332
Query: 204 FSPNGKYIL 212
+SP+G I+
Sbjct: 333 WSPDGDKIV 341
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 30.2 bits (68), Expect = 1.0
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 211
PV+ V + G+ + S G+ W S L +P V ++ FSPN KY+
Sbjct: 34 PVAYVSESPLGTYLFSEHAAGV-ECWGGPSKAKLVRFR---HPDVKYLDFSPNEKYL 86
Score = 28.7 bits (64), Expect = 3.5
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 190 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
T + +N PV++V SP G Y+ + ++ W
Sbjct: 26 TRFESENWPVAYVSESPLGTYLFSEHAAG-VECWG 59
Score = 27.5 bits (61), Expect = 7.6
Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 32/140 (22%)
Query: 75 VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
V+ S L S ++ W S L + V +F+P +V+ S E
Sbjct: 38 VSESPLGTYLFS-EHAAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWS-REP 93
Query: 135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 194
+ + S + +WD ASG + +
Sbjct: 94 II-----------------------EPEIEIS---PFTSKNNVFVWDIASGMIVFSFNGI 127
Query: 195 DNPPV--SFVKFSPNGKYIL 212
P + +KFS + KY+
Sbjct: 128 SQPYLGWPVLKFSIDDKYVA 147
>gnl|CDD|183150 PRK11468, PRK11468, dihydroxyacetone kinase subunit DhaK;
Provisional.
Length = 356
Score = 29.6 bits (67), Expect = 1.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 217 DNTLKLWDSKVVTPAI 232
D TL LWD+ V TPA+
Sbjct: 337 DETLALWDAPVHTPAL 352
>gnl|CDD|202059 pfam01950, FBPase_3, Fructose-1,6-bisphosphatase. This is a family
of bacterial and archaeal fructose-1,6-bisphosphatases
(FBPases). FBPase catalyzes the hydrolysis of
D-fructose-1,6-bisphosphate (FBP) to
D-fructose-6-phosphate (F6P) and orthophosphate and is
an essential regulatory enzyme in the glyconeogenic
pathway.
Length = 363
Score = 29.1 bits (66), Expect = 2.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 60
+ V +GE A S ++L I G Y GK
Sbjct: 200 VIKRVYRRSDGEIAAVVSTERLNLIAGKYVGK 231
>gnl|CDD|239660 cd03689, RF3_II, RF3_II: this subfamily represents the domain II of
bacterial Release Factor 3 (RF3). Termination of protein
synthesis by the ribosome requires two release factor
(RF) classes. The class II RF3 is a GTPase that removes
class I RFs (RF1 or RF2) from the ribosome after release
of the nascent polypeptide. RF3 in the GDP state binds
to the ribosomal class I RF complex, followed by an
exchange of GDP for GTP and release of the class I RF.
Sequence comparison of class II release factors with
elongation factors shows that prokaryotic RF3 is more
similar to EF-G whereas eukaryotic eRF3 is more similar
to eEF1A, implying that their precise function may
differ.
Length = 85
Score = 27.2 bits (61), Expect = 2.4
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 126 IVSGSFDESVRIWDVRTGKCLKTLPAHS 153
+ SG F+ +++ VR GK ++
Sbjct: 23 VCSGKFERGMKVKHVRLGKEVRLSNPQQ 50
>gnl|CDD|176199 cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase.
NAD-linked ribitol-5-phosphate dehydrogenase, a member
of the MDR/zinc-dependent alcohol dehydrogenase-like
family, oxidizes the phosphate ester of
ribitol-5-phosphate to xylulose-5-phosphate of the
pentose phosphate pathway. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
Length = 341
Score = 28.5 bits (64), Expect = 3.3
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 150 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 200
P D + ++ S SS YDG + + L L D+ +P V+
Sbjct: 91 PVEKDEIIPENYLPS-SRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVA 140
>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain. This domain contains several
repeats of the PQQ repeat.
Length = 234
Score = 28.1 bits (63), Expect = 3.5
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 132 DESVRIWDVRTGKCLKTLPAHSDPVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQ 186
D V D TGK L + + V DG + ++ G D A+G+
Sbjct: 2 DGVVAALDAATGKVLWRVDLGGTALGGGVAV--DGGRLYVATGKGELVALDAATGK 55
>gnl|CDD|219410 pfam07433, DUF1513, Protein of unknown function (DUF1513). This
family consists of several bacterial proteins of around
360 residues in length. The function of this family is
unknown.
Length = 304
Score = 28.3 bits (64), Expect = 3.8
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 156 VSAVHFNRDGSLI-VSSSYDGLCRIWDTASGQCL 188
+ +V +RDG L+ V+S G IWD A+G+ L
Sbjct: 219 IGSVAADRDGRLVAVTSPRGGRVAIWDAATGRLL 252
>gnl|CDD|112322 pfam03498, CDtoxinA, Cytolethal distending toxin A/C family.
Length = 149
Score = 27.4 bits (61), Expect = 3.9
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 6/101 (5%)
Query: 93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA- 151
L W L S L T G++ F + I+ G +V+ + TG CL
Sbjct: 13 LTNWALDSRNWLSTNWGYTPID-SNEFGLLRDKIMDGKNGGTVQFKNPDTGTCLAAYGNG 71
Query: 152 --HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 190
H SLI +++ G +I +SG C+
Sbjct: 72 VIHLKACDDDDLATLFSLIPTTT--GAVQIKSLSSGLCITA 110
>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2,
rSAM/selenodomain-associated. This enzyme may transfer
a nucleotide, or it sugar moiety, as part of a
biosynthetic pathway. Other proposed members of the
pathway include another transferase (TIGR04282), a
phosphoesterase, and a radical SAM enzyme (TIGR04167)
whose C-terminal domain (pfam12345) frequently contains
a selenocysteine [Unknown function, Enzymes of unknown
specificity].
Length = 220
Score = 27.9 bits (63), Expect = 4.0
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 76 AWSSDSRLLVS--GSDDKTLKIWELSSGKCLKTLKG 109
A D+ ++V GS D T++I K + + KG
Sbjct: 23 ALPGDAEVIVVDGGSTDGTVEIARSLGAKVIHSPKG 58
>gnl|CDD|132162 TIGR03118, PEPCTERM_chp_1, TIGR03118 family protein. This model
describes and uncharacterized conserved hypothetical
protein. Members are found with the C-terminal putative
exosortase interaction domain, PEP-CTERM, in
Nitrosospira multiformis, Rhodoferax ferrireducens,
Solibacter usitatus Ellin6076, and Acidobacteria
bacterium Ellin345. It is found without the PEP-CTERM
domain in several other species, including Burkholderia
ambifaria, Gloeobacter violaceus PCC 7421, and three
copies in the Acanthamoeba polyphaga mimivirus
[Hypothetical proteins, Conserved].
Length = 336
Score = 27.5 bits (61), Expect = 6.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
G+L+V + DG +D SG L L+D DN PV
Sbjct: 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV 295
>gnl|CDD|216201 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal
region. This family is an alignment of the region to
the N-terminal side of the active site. The Prosite
motif does not correspond to this Pfam entry.
Length = 348
Score = 27.3 bits (61), Expect = 7.4
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 162 NRDGS-LIVSSSYDGLCR--------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
+ DG L+++++Y+ + R I+D +G + + + K+SP+G +
Sbjct: 1 SPDGKYLLLATNYEKIWRHSYTASYYIYDLETGTV--EPLPPGEGKIQYAKWSPDGHKL- 57
Query: 213 AATLDNTLKLWD 224
A DN L + +
Sbjct: 58 AYVRDNNLYVRE 69
>gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional.
Length = 427
Score = 27.3 bits (61), Expect = 7.7
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 11/39 (28%)
Query: 181 DTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAAT 215
D A+GQ T + D++P F+PNG+YIL AT
Sbjct: 358 DLATGQV--TALTDTTRDESP-----SFAPNGRYILYAT 389
>gnl|CDD|178459 PLN02868, PLN02868, acyl-CoA thioesterase family protein.
Length = 413
Score = 27.4 bits (61), Expect = 8.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 156 VSAVHFNRDGSLIVSSSYDGL 176
+ FNR G L+VS + + L
Sbjct: 392 ATGHMFNRKGELVVSLTQEAL 412
>gnl|CDD|220023 pfam08801, Nucleoporin_N, Nup133 N terminal like. Nup133 is a
nucleoporin that is crucial for nuclear pore complex
(NPC) biogenesis. The N terminal forms a seven-bladed
beta propeller structure. This family now contains other
sized nucleoporins, including Nup155, Nup8, Nuo132,
Nup15 and Nup170.
Length = 411
Score = 27.1 bits (60), Expect = 9.3
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 66 SGHKLGISDVAW-SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN 124
I + SS RLL + + T+++W+LS + + +
Sbjct: 187 PSSDREIVSLRVDSSRGRLLYTLTSKGTIRVWDLSPSGEKLVREVDIYEIILRDLQESIP 246
Query: 125 LIVSGSFDESVRIWDV 140
S +S++I D+
Sbjct: 247 KSASTLSSKSLKILDI 262
>gnl|CDD|239161 cd02760, MopB_Phenylacetyl-CoA-OR, The MopB_Phenylacetyl-CoA-OR CD
contains the phenylacetyl-CoA:acceptor oxidoreductase,
large subunit (PadB2), and other related proteins. The
phenylacetyl-CoA:acceptor oxidoreductase has been
characterized as a membrane-bound molybdenum-iron-sulfur
enzyme involved in anaerobic metabolism of phenylalanine
in the denitrifying bacterium Thauera aromatica. Members
of this CD belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 760
Score = 27.2 bits (60), Expect = 9.8
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 185
+WD R+G+ + + P A F DG+ VS D I G
Sbjct: 283 VWDERSGRAVPFDTRGAVPAVAGDFAVDGA--VSVDADDETAIHQGVEG 329
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.410
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,946,526
Number of extensions: 1047741
Number of successful extensions: 935
Number of sequences better than 10.0: 1
Number of HSP's gapped: 857
Number of HSP's successfully gapped: 75
Length of query: 247
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 153
Effective length of database: 6,768,326
Effective search space: 1035553878
Effective search space used: 1035553878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)