BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4394
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 240 IDKVPKVTSPVLVIHGTEDEV 260
ID++P VT+PVLVI G DE
Sbjct: 256 IDRLPDVTAPVLVIAGEHDEA 276
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 231 IMGLSTLENIDKVPKVTSPVLVIHGTEDEVI 261
I S + D + ++ PVLV HGT+D+V+
Sbjct: 199 IAAFSETDFTDDLKRIDVPVLVAHGTDDQVV 229
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 242 KVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVEPLWVEG 284
+P++ P L++HGT D + + + ++ + E + VEG
Sbjct: 212 DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEG 254
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 242 KVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVEPLWVEG 284
+P++ P L++HGT D + + + ++ + E + VEG
Sbjct: 212 DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEG 254
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 243 VPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVEPLWVEG 284
+P++ P L++HGT D + + + ++ + E + VEG
Sbjct: 214 IPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEG 255
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 242 KVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVEPLWVEG 284
+P++ P L++HGT D + + + ++ + E + VEG
Sbjct: 212 DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEG 254
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 241 DKVPKVTSPVLVIHGTEDEVIDLSHGIAI---YERC 273
D V K T PVL++HG +DE + +A Y+ C
Sbjct: 183 DFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNC 218
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 231 IMGLSTLENIDKVPKVTSPVLVIHGTEDEVI 261
I+ S + + + +T PVLVIHG +D+V+
Sbjct: 204 IVAFSQTDFTNDLKGITIPVLVIHGDDDQVV 234
>pdb|3HXK|A Chain A, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|B Chain B, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|C Chain C, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|D Chain D, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
Length = 276
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 159 RTRYGISPENIILYGQSIGTVPTIDLASRYQVGAVILHSPLMSGMRVAFPRTKRT--WFF 216
+ I+PE + L G S G LA+ Y I H P G+ + +P T T W
Sbjct: 111 HKEWQINPEQVFLLGCSAGG----HLAAWYGNSEQI-HRP--KGVILCYPVTSFTFGWPS 163
Query: 217 DVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRP 276
D+ ++ I +S +KV T P + H +DE + + + + +R +
Sbjct: 164 DL------SHFNFEIENISEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKH 217
Query: 277 VEPL 280
P
Sbjct: 218 QVPF 221
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 235 STLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPR 275
S+ E+I +P T L+IHG ED+V+ LS + + E R
Sbjct: 204 SSDEDIKTLPNET---LIIHGREDQVVPLSSSLRLGELIDR 241
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 235 STLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPR 275
S+ E+I +P T L+IHG ED+V+ LS + + E R
Sbjct: 204 SSDEDIKTLPNET---LIIHGREDQVVPLSSSLRLGELIDR 241
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 30/109 (27%)
Query: 163 GISPENIILYGQSIGTVPTIDLASRYQVGAVILHSPLMSGMRVAFPRTKRTWFFDVFPRV 222
GI+ E IIL G S G GAV+LH+ AF R + V
Sbjct: 112 GIAAERIILAGFSQG-------------GAVVLHT--------AFRR-----YAQPLGGV 145
Query: 223 IFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYE 271
+ + P L+ K PVL +HG++D+V+D + G A ++
Sbjct: 146 LALSTYAPTFDDLALDERHK----RIPVLHLHGSQDDVVDPALGRAAHD 190
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 228 KTPIMGLSTLENI-----DKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVEPL-W 281
+TP++ L L+ + D + + +P V+ DE+I+ IY PV+ + W
Sbjct: 157 QTPMLTLKALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKW 216
Query: 282 VE 283
E
Sbjct: 217 YE 218
>pdb|4AO6|A Chain A, Native Structure Of A Novel Cold-Adapted Esterase From An
Arctic Intertidal Metagenomic Library
pdb|4AO7|A Chain A, Zinc Bound Structure Of A Novel Cold-Adapted Esterase From
An Arctic Intertidal Metagenomic Library
pdb|4AO8|A Chain A, Peg-Bound Complex Of A Novel Cold-Adapted Esterase From An
Arctic Intertidal Metagenomic Library
Length = 259
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 227 VKTPIMGLSTLENIDK------VPKVTSPVLVIHGTEDEVIDLSHGIAIYERC 273
+K ++GL +E ++ P+VT PV + +DE++ L G+ ++ +
Sbjct: 172 IKVALLGLMGVEGVNGEDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKL 224
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 238 ENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVEPLWVEGLS 286
E + ++ SP L++ G +DEV+ A + PVE + + G S
Sbjct: 141 EGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGAS 189
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 229 TPIMGLSTLENIDKV-----PKVTSPVLVIHGTEDEVIDLSHGIAIY 270
TP+ + L I V P+V P L+I ED V+ +G IY
Sbjct: 195 TPVPAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIY 241
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 229 TPIMGLSTLENIDKV-----PKVTSPVLVIHGTEDEVIDLSHGIAIY 270
TP+ + L I V P+V P L+I ED V+ +G IY
Sbjct: 193 TPVPAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIY 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,818,039
Number of Sequences: 62578
Number of extensions: 301442
Number of successful extensions: 634
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 17
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)