RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4394
(286 letters)
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 107 bits (269), Expect = 5e-29
Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 51/192 (26%)
Query: 93 TILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTGRPSEKNLYADID 152
++ HG D + L SR N+ + DY G+ G S G P + + AD
Sbjct: 1 LVVLLHGAGGDPEAYAPLARALASR-GYNVVAVDYPGH-----GASLGAPDAEAVLAD-- 52
Query: 153 AAWNTLRTRYGISPENIILYGQSIGTVPTIDLASRYQVGAVILHSPLMSGMRVAFPRTKR 212
+ PE I+L G S+G + LA+R +
Sbjct: 53 ---------APLDPERIVLVGHSLGGGVALLLAARDPRVKAAVV---------------- 87
Query: 213 TWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYER 272
+ + +D + K+T PVL+IHGT D V+ A+
Sbjct: 88 ------------------LAAGDPPDALDDLAKLTVPVLIIHGTRDGVVPPEEAEALAAA 129
Query: 273 CPRPVEPLWVEG 284
P P E + +EG
Sbjct: 130 LPGPAELVVIEG 141
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 74.0 bits (182), Expect = 5e-16
Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 24/193 (12%)
Query: 94 ILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTGRPSEKNLYADIDA 153
++ HG L + + D G+G S G P D A
Sbjct: 1 VVLLHGAGGSAESWRPLAEALAAGYRV------LA-PDLPGHGDSDGPPRTPYSLEDDAA 53
Query: 154 AWNTLRTRYGISPENIILYGQSIGTVPTIDLASRY--QVGAVILHSPLMSGMRVAFPRTK 211
L G+ P ++L G S+G + A+R +V ++L SP + +
Sbjct: 54 DLAALLDALGLGP--VVLVGHSLGGAVALAAAARRPERVAGLVLISPPLRDLEELLAADA 111
Query: 212 RTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYE 271
+ ++ A+++ + ++T PVLVIHG +D ++ + E
Sbjct: 112 AALLALLRAALLDADLREAL------------ARLTVPVLVIHGEDDPLVPPEAARRLAE 159
Query: 272 RCPRPVEPLWVEG 284
P E + + G
Sbjct: 160 ALPG-AELVVLPG 171
>gnl|CDD|223999 COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General
function prediction only].
Length = 299
Score = 69.4 bits (169), Expect = 1e-13
Identities = 42/195 (21%), Positives = 66/195 (33%), Gaps = 15/195 (7%)
Query: 93 TILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTGRPSEKNLYADID 152
+ G A G F + + S DY G S G L
Sbjct: 90 SGGDPRGLADSEGYAEDFSAAVL-----LLLSEGVLDKDYRLLGASLGPRILAGLSLGGP 144
Query: 153 AAWNTLRTRYGISPE-NIILYGQSIGTVPTIDLASRYQVGAVILHSPLMSGMRVAFPRTK 211
+A L I+++G+S+G + L A L L++ P
Sbjct: 145 SAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELARELIDYLITP-GGFAPLPA 203
Query: 212 RTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYE 271
D P ++ L ++ +K+ PVL++HG DEV+ L +YE
Sbjct: 204 PEAPLDTLPLRAVL-----LLLLDPFDDAEKISPR--PVLLVHGERDEVVPLRDAEDLYE 256
Query: 272 RCP-RPVEPLWVEGL 285
RP + L+V G
Sbjct: 257 AARERPKKLLFVPGG 271
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 51.6 bits (122), Expect = 1e-07
Identities = 40/246 (16%), Positives = 70/246 (28%), Gaps = 64/246 (26%)
Query: 93 TILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTGRPSEKNLYA-DI 151
++ HG F L + Y D G+G S + YA D+
Sbjct: 23 PLVLLHGFPGSSSVWRPVFKVLPALAA----RYRVIAPDLRGHGRSDPAGYSLSAYADDL 78
Query: 152 DAAWNTLRTRYGISPENIILYGQSIGTVPTIDLASRY--QVGAVILHSPLMSGMRVAFPR 209
A L G+ E ++L G S+G + LA R+ +V ++L P +
Sbjct: 79 AA----LLDALGL--EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAAL 132
Query: 210 TKRTW------FFDVFPRVIFANVKTPIMGLSTLENI----------------------- 240
+ D+ + A + L L +
Sbjct: 133 RQPAGAAPLAALADLLLGLDAAAFAALLAALGLLAALAAAARAGLAEALRAPLLGAAAAA 192
Query: 241 ----------------------DKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVE 278
+ ++T P L+IHG +D V+ + P
Sbjct: 193 FARAARADLAAALLALLDRDLRAALARITVPTLIIHGEDDPVVPAELARRLAAALPNDAR 252
Query: 279 PLWVEG 284
+ + G
Sbjct: 253 LVVIPG 258
>gnl|CDD|165193 PHA02857, PHA02857, monoglyceride lipase; Provisional.
Length = 276
Score = 47.2 bits (112), Expect = 3e-06
Identities = 47/230 (20%), Positives = 84/230 (36%), Gaps = 50/230 (21%)
Query: 74 SRGNRLACMFMKCSPNARFTILFSHGNAVDIGQMSSFFTGLG---SRINCNIFSYDYSGY 130
+ + C + K + + SHG G+ S + L S + +FS +
Sbjct: 8 LDNDYIYCKYWKPITYPKALVFISHGA----GEHSGRYEELAENISSLGILVFS-----H 58
Query: 131 DYSGYGISTGRP---SEKNLYA-DIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLAS 186
D+ G+G S G + +Y D+ T+++ Y P + L G S+G +I A
Sbjct: 59 DHIGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTYPGVP--VFLLGHSMGATISILAAY 116
Query: 187 RYQ--VGAVILHSPLMSGMRVAFPRTKRTWFFDVF-PRVIFANVKTPIMGLSTLENI--- 240
+ A+IL SPL++ V +F P I + + E
Sbjct: 117 KNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYPNKIVGKLCPESVSRDMDEVYKYQ 176
Query: 241 --------------------------DKVPKVTSPVLVIHGTEDEVIDLS 264
+PK+ +P+L++ GT +E+ D+S
Sbjct: 177 YDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVS 226
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 45.6 bits (108), Expect = 8e-06
Identities = 25/202 (12%), Positives = 56/202 (27%), Gaps = 52/202 (25%)
Query: 125 YDYSGYDYSGYGISTGRPSEKNLY-ADIDAAWNTLRTRYGISPENIILYGQSIGTVPTID 183
+D +D G+G S+ + D+ L G+ + + L G S+G + +
Sbjct: 1 FDVIAFDLRGFGRSSPPKDFADYRFDDLAEDLEALLDALGL--DKVNLVGHSMGGLIALA 58
Query: 184 LASRYQ--VGAVILHSPL-----------MSGMRVAFPRTKRTWFFDVFP---------- 220
A++Y V A++L + + +D
Sbjct: 59 YAAKYPDRVKALVLVGTVHPAGLSSPLTPRGNLLGLLLDNFFNRLYDSVEALLGRAIKQF 118
Query: 221 -------------------------RVIFANVKTPIMGLSTLEN-IDKVPKVTSPVLVIH 254
+ + +G + + + + P L+I
Sbjct: 119 QALGRPFVSDFLKQFELSSLIRFGETLALDGLLGYALGYDLVWDRSAALKDIDVPTLIIW 178
Query: 255 GTEDEVIDLSHGIAIYERCPRP 276
G +D ++ + P
Sbjct: 179 GDDDPLVPPDASEKLAALFPNA 200
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 45.4 bits (108), Expect = 1e-05
Identities = 43/208 (20%), Positives = 70/208 (33%), Gaps = 50/208 (24%)
Query: 125 YDYSGYDYSGYGISTGRP-----SEKNLYADIDAAWNTLRTRYGISPENIILYGQSIGTV 179
+D D G+G S S + D+DA T+ + L G S+G +
Sbjct: 62 FDVYALDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPDP--GLPVFLLGHSMGGL 119
Query: 180 PTIDLASRYQ--VGAVILHSP-------------------LMSGMRVAFPRTKR------ 212
+ +RY + ++L SP L+ +R P
Sbjct: 120 IALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVL 179
Query: 213 TWFFDVFPRVIFANVKTPIMG------------LSTLEN--IDKVPKVTSPVLVIHGTED 258
T P + A P++G L + P + PVL++ G +D
Sbjct: 180 TDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGDD 239
Query: 259 EVIDLSHGIA-IYERCPRP-VEPLWVEG 284
V+D G+A +ER P E + G
Sbjct: 240 RVVDNVEGLARFFERAGSPDKELKVIPG 267
>gnl|CDD|215216 PLN02385, PLN02385, hydrolase; alpha/beta fold family protein.
Length = 349
Score = 42.4 bits (100), Expect = 1e-04
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 55/253 (21%)
Query: 66 IEGFFTRTSRGNRLACMFMKC----SPNARFTILFSHGNAVDIGQMSSFF-TGLGSRINC 120
E + SRG + F K + + + F HG G +FF G+ +I
Sbjct: 61 TEESYEVNSRGVEI---FSKSWLPENSRPKAAVCFCHG----YGDTCTFFFEGIARKIA- 112
Query: 121 NIFSYDYSGYDYSGYGISTGR----PSEKNLYADIDAAWNTLRTRYGISPENIILYGQSI 176
Y DY G+G+S G PS +L D+ ++ ++ L+GQS+
Sbjct: 113 -SSGYGVFAMDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSM 171
Query: 177 GTVPT--IDLASRYQVGAVILHSPL----------------MSGMRVAFPRTK------- 211
G + L IL +P+ + + P+ K
Sbjct: 172 GGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILILLANLLPKAKLVPQKDL 231
Query: 212 -RTWFFDVFPR------VIFAN----VKTPIMGLSTLENIDK-VPKVTSPVLVIHGTEDE 259
F D+ R VI ++T + L T + I+ + +V+ P+L++HG D+
Sbjct: 232 AELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADK 291
Query: 260 VIDLSHGIAIYER 272
V D S +YE+
Sbjct: 292 VTDPSVSKFLYEK 304
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 39.2 bits (92), Expect = 0.001
Identities = 26/116 (22%), Positives = 36/116 (31%), Gaps = 37/116 (31%)
Query: 158 LRTRYGISPENIILYGQSIGTVPTIDLASRY--QVGAVILHSPLMSGMRVAFPRTKRTWF 215
L YGI IIL G S G + L IL S +
Sbjct: 90 LAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGM---------------- 133
Query: 216 FDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYE 271
+ P + + P+L+ HGTED V+ L+ A+ E
Sbjct: 134 ------LPLEPELLPDLAGT-------------PILLSHGTEDPVVPLALAEALAE 170
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 37.1 bits (86), Expect = 0.008
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 240 IDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYER 272
I + +P+L+IHG ED+ + + + +
Sbjct: 544 IFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDA 576
>gnl|CDD|216940 pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This
family consists of both phospholipases and
carboxylesterases with broad substrate specificity, and
is structurally related to alpha/beta hydrolases
pfam00561.
Length = 213
Score = 34.2 bits (79), Expect = 0.041
Identities = 27/113 (23%), Positives = 36/113 (31%), Gaps = 34/113 (30%)
Query: 161 RYGISPENIILYGQSIGTVPTIDLA--SRYQVGAVILHSPLMSGMRVAFPRTKRTWFFDV 218
+ GI II+ G S G + A S +G +I S A P
Sbjct: 96 KTGIPASRIIIGGFSQGAAVALYTALTSPQPLGGIIAFS-------GALP------LPQK 142
Query: 219 FPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYE 271
FP+ PI L +HG ED V+ L+ G E
Sbjct: 143 FPQHPTGVADIPI-------------------LQLHGYEDPVVPLALGKLAKE 176
>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.
Length = 212
Score = 33.3 bits (77), Expect = 0.090
Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 23/137 (16%)
Query: 145 KNLYADIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLASRYQVGAVILHSP-----L 199
+N + D AA L + + P+ + ++G S G Y GA + P
Sbjct: 42 QNEFDDFIAAAEYLIAQGYVDPDRLAIWGGSYGG---------YLTGAALNQRPDLFKAA 92
Query: 200 MSGMRVAFPRTKRTWFFDVFPRVIFANVKTPI------MGLSTLENIDKVPKVTSPVLVI 253
++ V + P LS D V K P+L+I
Sbjct: 93 VAV--VPVVDWLTYMSDTSPFTERYMEWGNPWDNEEGYRYLSPYSPYDNV-KAYPPLLLI 149
Query: 254 HGTEDEVIDLSHGIAIY 270
HG D+ + + + +
Sbjct: 150 HGLHDDRVPPAEALKLV 166
>gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family.
Length = 215
Score = 31.5 bits (72), Expect = 0.35
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 37/115 (32%)
Query: 149 ADIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLASRYQVGAVILHSPLMSGMRVAF- 207
D+ AA N LR + + + + + G +G LA+R V A V+F
Sbjct: 80 DDLLAAINYLRGQPYVDTKKVGVVGFCLGGRLAFLLAARNGVDAA-----------VSFY 128
Query: 208 PRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVID 262
+ P+ D+ P + +P+L G ED +
Sbjct: 129 GTG----------------PEPPL---------DEAPAIKAPILAHFGEEDPFVP 158
>gnl|CDD|217816 pfam03959, FSH1, Serine hydrolase (FSH1). This is a family of
serine hydrolases.
Length = 209
Score = 31.5 bits (72), Expect = 0.37
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 244 PKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVEPLWVEG 284
P + +P L + G D V+ + E C L G
Sbjct: 155 PPIQTPSLHVIGELDTVVPEERSEKLAEACKNSATVLEHPG 195
>gnl|CDD|183144 PRK11460, PRK11460, putative hydrolase; Provisional.
Length = 232
Score = 31.2 bits (71), Expect = 0.44
Identities = 48/212 (22%), Positives = 71/212 (33%), Gaps = 77/212 (36%)
Query: 87 SPNARFTILFSHG---NAVDIGQMSSFF---------TGLGSRINCNIFSYDYSGYDYSG 134
P + +LF HG N V +G++ S+F +G G + SG
Sbjct: 13 KPAQQLLLLF-HGVGDNPVAMGEIGSWFAPAFPDALVVSVG-------------GPEPSG 58
Query: 135 YGISTGRP-------SEKNLYADIDAAW----NTLR---TRYGISPENIILYGQSIGTVP 180
G GR +E N A + A T+R + G+ L G S G
Sbjct: 59 NG--AGRQWFSVQGITEDNRQARVAAIMPTFIETVRYWQQQSGVGASATALIGFSQGA-- 114
Query: 181 TIDLASRYQVGAVILHSPLMSGMRVAFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENI 240
+ L AV L +G +AF + R + P
Sbjct: 115 IMALE------AVKAEPGL-AGRVIAF--SGR---YASLPETAPTATT------------ 150
Query: 241 DKVPKVTSPVLVIHGTEDEVIDLSHGIAIYER 272
+ +IHG ED VID++H +A E
Sbjct: 151 ---------IHLIHGGEDPVIDVAHAVAAQEA 173
>gnl|CDD|212713 cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain of Insulin
Receptor tyrosine kinase Substrate p53, Brain-specific
Angiogenesis Inhibitor 1-Associated Protein 2
(BAIAP2)-Like proteins, and similar proteins. Proteins
in this family include IRSp53, BAIAP2L1, BAIAP2L2, and
similar proteins. They all contain an
Inverse-Bin/Amphiphysin/Rvs (I-BAR) or IMD domain in
addition to the SH3 domain. IRSp53, also known as
BAIAP2, is a scaffolding protein that takes part in
many signaling pathways including Cdc42-induced
filopodia formation, Rac-mediated lamellipodia
extension, and spine morphogenesis. IRSp53 exists as
multiple splicing variants that differ mainly at the
C-termini. BAIAP2L1, also called IRTKS (Insulin
Receptor Tyrosine Kinase Substrate), serves as a
substrate for the insulin receptor and binds the small
GTPase Rac. It plays a role in regulating the actin
cytoskeleton and colocalizes with F-actin, cortactin,
VASP, and vinculin. IRSp53 and IRTKS also mediate the
recruitment of effector proteins Tir and EspFu, which
regulate host cell actin reorganization, to bacterial
attachment sites. BAIAP2L2 co-localizes with clathrin
plaques but its function has not been determined. The
SH3 domains of IRSp53 and IRTKS have been shown to bind
the proline-rich C-terminus of EspFu. SH3 domains are
protein interaction domains that bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs. They play versatile and
diverse roles in the cell including the regulation of
enzymes, changing the subcellular localization of
signaling pathway components, and mediating the
formation of multiprotein complex assemblies.
Length = 57
Score = 28.8 bits (65), Expect = 0.52
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 56 WQYGDNERSNIEGFF 70
W YG+NERS G+F
Sbjct: 36 WHYGENERSGRRGWF 50
>gnl|CDD|202693 pfam03583, LIP, Secretory lipase. These lipases are expressed and
secreted during the infection cycle of these pathogens.
In particular, C. albicans has a large number of
different lipases, possibly reflecting broad lipolytic
activity, which may contribute to the persistence and
virulence of C. albicans in human tissue.
Length = 291
Score = 31.2 bits (71), Expect = 0.54
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 247 TSPVLVIHGTEDEVIDLSHGIAIYER-CPRPVEPL-WVEGLS 286
PV V HGT DE++ ++ A+Y+ C + + + E LS
Sbjct: 220 QIPVFVYHGTHDEIVPIADIDALYKNWCAWGIASVEFAEDLS 261
>gnl|CDD|115027 pfam06342, DUF1057, Alpha/beta hydrolase of unknown function
(DUF1057). This family consists of several
Caenorhabditis elegans specific proteins of unknown
function. Members of this family have an alpha/beta
hydrolase fold.
Length = 297
Score = 30.9 bits (70), Expect = 0.69
Identities = 36/207 (17%), Positives = 75/207 (36%), Gaps = 41/207 (19%)
Query: 87 SPNARFTILFSHGNA---VDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTGRPS 143
S + T++ HG+ D + S F L R + G +Y G+ +TG P
Sbjct: 31 SGSPFGTVVAFHGSPGSHNDFKYIRSKFEDLNIR---------FIGVNYPGFEFTTGYPG 81
Query: 144 EKNLYADIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLAS-RYQVGAVILHSP---L 199
+ + + ++ L + +I+ G S G + A+ R G V+++ +
Sbjct: 82 QSHTNQERNSYSKALLEELELK-GKLIIMGHSRGCENALQTATTRPAHGLVMINPTGFRI 140
Query: 200 MSGMRVAFPRTKRTWFFDVFPRVIF---------------------ANVKTPIMGLS--- 235
G+R W + + P + A + +
Sbjct: 141 HKGIRPKSRMETINWVYKLLPLFLGDSILYFYYKSVGLKVSDGEEAAAAMRSMQTFALEE 200
Query: 236 TLENIDKVPKVTSPVLVIHGTEDEVID 262
LE+IDK+ + + ++ G +D +++
Sbjct: 201 QLESIDKLNEKPTKTFIVFGGKDHLVE 227
>gnl|CDD|215352 PLN02652, PLN02652, hydrolase; alpha/beta fold family protein.
Length = 395
Score = 30.6 bits (69), Expect = 0.81
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 245 KVTSPVLVIHGTEDEVID 262
VT P +V+HGT D V D
Sbjct: 322 SVTVPFMVLHGTADRVTD 339
>gnl|CDD|114453 pfam05728, UPF0227, Uncharacterized protein family (UPF0227).
Despite being classed as uncharacterized proteins, the
members of this family are almost certainly enzymes that
are distantly related to the pfam00561.
Length = 187
Score = 29.7 bits (67), Expect = 1.3
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 22/128 (17%)
Query: 164 ISPENIILYGQSIGTVPTIDLASRYQVGAVILHSPL-----MSGM--RVAFPRTKRTWFF 216
+ +N +L G S+G L R + V+ + + ++G A P T +T+
Sbjct: 56 LGDDNPLLVGSSLGGYYATWLGFRCGLRQVLFNPAVRPYENLAGKLGEQANPYTGQTYVL 115
Query: 217 DVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRP 276
+ + +++ + + L+N D LV+ DEV+D A Y
Sbjct: 116 EEY-----HDIELKCLEVFRLKNPD-------RCLVLLQKGDEVLDYRRAAAHYRPY--- 160
Query: 277 VEPLWVEG 284
E +W G
Sbjct: 161 YEIVWDGG 168
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 29.7 bits (67), Expect = 1.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 149 ADIDAAWNTLRTRYGISPENIILYGQSIG 177
A++ L +SPEN+ L G S+G
Sbjct: 130 AEVAKLLVELEEELNVSPENVHLIGHSLG 158
>gnl|CDD|181654 PRK09109, motC, flagellar motor protein; Reviewed.
Length = 246
Score = 29.1 bits (66), Expect = 2.1
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 21/87 (24%)
Query: 190 VGAVILHSPLMSGMRVAFPRTKRTWFFDVFPRVIFANVKTPIM---------GLSTLENI 240
+GAV+L +PL R AF + W F PR I+ GL LE++
Sbjct: 44 LGAVLLQTPLAVFKR-AFKILR--WVF-FPPRSDLEGGIDRIVEWSNTARKEGLLGLEDV 99
Query: 241 DKVPKVTSPV------LVIHGTEDEVI 261
+ P L++ G E E I
Sbjct: 100 --ADREPDPFARKGLQLLVDGAEPESI 124
>gnl|CDD|224605 COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General
function prediction only].
Length = 254
Score = 29.3 bits (66), Expect = 2.3
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 198 PLMSGMRVAFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTE 257
L ++ R KRT F P V+FA KTP + I +V + + +
Sbjct: 31 SLGEFAKLDIHREKRTGF----PEVVFAPGKTP----EQIVEIVEVLLEKNGIALATRVS 82
Query: 258 DEVIDL 263
E+++
Sbjct: 83 PELLEA 88
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 29.1 bits (66), Expect = 2.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 249 PVLVIHGTEDEVIDLSHG 266
PVLVI G +D +I +H
Sbjct: 316 PVLVIWGEQDRIIPAAHA 333
>gnl|CDD|224561 COG1647, COG1647, Esterase/lipase [General function prediction
only].
Length = 243
Score = 28.5 bits (64), Expect = 3.3
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 23/138 (16%)
Query: 167 ENIILYGQSIGTVPTIDLASRYQVGAVILHSPLMSGMRVAFPRTKRTWFFDVFPRVIFAN 226
+ I + G S+G V + LA Y ++ P+ + + V R + F
Sbjct: 85 DEIAVVGLSMGGVFALKLAYHYPPKKIV---PMCAPVNVKSWRIIIEGLLEYFRNAKKYE 141
Query: 227 VKTPIMGLSTLENIDKVP-------------------KVTSPVLVIHGTEDEVIDLSHGI 267
K +++ P K+ SP LV+ G +DE++
Sbjct: 142 GKDQEQIDKEMKSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESAN 201
Query: 268 AIY-ERCPRPVEPLWVEG 284
IY E W+EG
Sbjct: 202 FIYDHVESDDKELKWLEG 219
>gnl|CDD|215231 PLN02421, PLN02421, phosphotransferase, alcohol group as
acceptor/kinase.
Length = 330
Score = 28.5 bits (64), Expect = 3.9
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 122 IFSYDYSGYDYSGYGIST------GRPSEKNLYADIDAAWNTLRTRYGISPEN 168
++Y Y Y GY I G + +LY + ++ R+ + P++
Sbjct: 205 FIDFEYGSYSYRGYDIGNHFNEYAGFDCDYSLYPSKEEQYHFF--RHYLRPDD 255
>gnl|CDD|165939 PLN02298, PLN02298, hydrolase, alpha/beta fold family protein.
Length = 330
Score = 28.2 bits (63), Expect = 4.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 242 KVPKVTSPVLVIHGTEDEVIDLSHGIAIYE 271
K+ V+ P +V+HG+ D V D A+YE
Sbjct: 246 KLKDVSIPFIVLHGSADVVTDPDVSRALYE 275
>gnl|CDD|203911 pfam08328, ASL_C, Adenylosuccinate lyase C-terminal. This domain
is found at the C-terminus of adenylosuccinate
lyase(ASL; PurB in E. coli). It has been identified in
bacteria, eukaryotes and archaea and is found together
with the lyase domain pfam00206. ASL catalyzes the
cleavage of succinylaminoimidazole carboxamide ribotide
to aminoimidazole carboxamide ribotide and fumarate and
the cleavage of adenylosuccinate to adenylate and
fumarate.
Length = 115
Score = 27.1 bits (61), Expect = 5.5
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 123 FSYDYSGYDYSGYGISTGRPSEKNLYADIDAAWNTL--------RTRYGI 164
F + YD G+ +E L AD+DA W L R RYGI
Sbjct: 20 FGHSLIAYDSLLKGLGKLEVNEARLAADLDANWEVLAEPIQTVMR-RYGI 68
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 28.0 bits (62), Expect = 6.4
Identities = 29/141 (20%), Positives = 43/141 (30%), Gaps = 18/141 (12%)
Query: 149 ADIDAAWNTLR---TRYGISPENIILYGQSIGTVPTIDLA--SRYQVGAVILHSPLMSGM 203
D AA+ LR GI P I + G S G + LA +R + + L+S +
Sbjct: 131 EDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPL 190
Query: 204 RVAFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTS-----------PVLV 252
+ + A + L D+ S P L+
Sbjct: 191 LDLTSSAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSGLPPTLI 250
Query: 253 IHGTEDEVIDLSHGIAIYERC 273
D + D G A ER
Sbjct: 251 QTAEFDPLRD--EGEAYAERL 269
>gnl|CDD|225496 COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 210
Score = 27.4 bits (61), Expect = 6.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 248 SPVLVIHGTEDEVIDL 263
SP LVI G D+V+DL
Sbjct: 150 SPGLVIQGDADDVVDL 165
>gnl|CDD|221763 pfam12769, DUF3814, Domain of unknown function (DUF3814). This is
a domain of unknown function. It is often found in
combination with pfam05222, pfam01262 and pfam02233 on
alanine dehydrogenase and pyridine nucleotide
transhydrogenase enzymes.
Length = 86
Score = 25.9 bits (58), Expect = 7.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 194 ILHSPLMSGM 203
LH+PLMS
Sbjct: 24 ALHTPLMSVT 33
>gnl|CDD|119365 cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18)
type II chitinases hydrolyze chitin, an abundant polymer
of N-acetylglucosamine and have been identified in
bacteria, fungi, insects, plants, viruses, and protozoan
parasites. The structure of this domain is an
eight-stranded alpha/beta barrel with a pronounced
active-site cleft at the C-terminal end of the
beta-barrel.
Length = 322
Score = 27.6 bits (62), Expect = 7.9
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 20/66 (30%)
Query: 121 NIFSYDYSGYDYSGYGISTGRPSEKNLYAD---------IDAAWNTLRTRYGISPENIIL 171
N+ +YD+ G + +TG S NLYA +DAA N G+ PE ++L
Sbjct: 205 NLMTYDFHG----AWSNTTGHHS--NLYASPADPPGGYSVDAAVNYYL-SAGVPPEKLVL 257
Query: 172 ----YG 173
YG
Sbjct: 258 GVPFYG 263
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.434
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,812,554
Number of extensions: 1396382
Number of successful extensions: 1226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1216
Number of HSP's successfully gapped: 44
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (25.9 bits)