RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4394
(286 letters)
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 80.4 bits (197), Expect = 4e-18
Identities = 31/228 (13%), Positives = 67/228 (29%), Gaps = 22/228 (9%)
Query: 72 RTSRGNRLACMFMKC---SPNARFTILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYS 128
R + G L P TIL + G A + + L + ++F YD
Sbjct: 10 RVNNGQELHVWETPPKENVPFKNNTILIASGFARRMDHFAGLAEYLSTN-GFHVFRYDSL 68
Query: 129 GYDYSGYGISTGRPSEKNLYADIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLASRY 188
+ G+S+G E + ++ +NI L S+ ++ S
Sbjct: 69 HHV----GLSSGSIDEFTMTTGKNSLCTVYHWLQTKGTQNIGLIAASLSARVAYEVISDL 124
Query: 189 QVGAVILHSPLMS------------GMRVAFPRTKRTWFFDVFPRVIFANVKTPIMGLST 236
++ +I +++ + + F+ V+
Sbjct: 125 ELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWD 184
Query: 237 LEN--IDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVEPLWV 282
+ +DKV + P++ D+ + + L+
Sbjct: 185 TLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTGHCKLYS 232
>d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga
maritima [TaxId: 2336]}
Length = 322
Score = 66.3 bits (160), Expect = 3e-13
Identities = 40/266 (15%), Positives = 74/266 (27%), Gaps = 20/266 (7%)
Query: 33 TYSFTPTESGSSTYHVQFNDKAEWQYGDNERSNIEGFFTRT--SRGNRLACMFMKCSPNA 90
F ES T + +R I+G+ +
Sbjct: 40 DPVFERMESHLKTVEAY---DVTFSGYRGQR--IKGWLLVPKLEEEKLPCVVQYIGYNGG 94
Query: 91 R-----FTILFSHGNAVDI----GQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTGR 141
R + S G + GQ S + G Y G+ G
Sbjct: 95 RGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILD-PRT 153
Query: 142 PSEKNLYADIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLASRY-QVGAVILHSPLM 200
+ ++ D A + + E I++ G S G + +++ + A++ P +
Sbjct: 154 YYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFL 213
Query: 201 SGMRVAFPRTKRTWFFDV--FPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTED 258
R A + ++ F + + LS + ++ + P L G D
Sbjct: 214 CHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMD 273
Query: 259 EVIDLSHGIAIYERCPRPVEPLWVEG 284
+ S A Y P E
Sbjct: 274 NICPPSTVFAAYNYYAGPKEIRIYPY 299
>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase
{Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 360
Score = 64.2 bits (155), Expect = 2e-12
Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 8/198 (4%)
Query: 87 SPNARFTILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTGRPSEKN 146
P ++ G + + R ++D G EK
Sbjct: 127 GPGPHPAVIMLGGLESTKEESFQMENLVLDR-GMATATFDGPGQGEMFEYKRIAGDYEK- 184
Query: 147 LYADIDAAWNTLRTRYGISPENIILYGQSI-GTVPTIDLASRYQVGAVILHSPLMSGMRV 205
A + L I + I + G+S+ G A ++ A I S +
Sbjct: 185 ---YTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGG-FSDLDY 240
Query: 206 AFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSH 265
T T + + + + + LE D + ++ P ++HG DEV LS
Sbjct: 241 WDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDEV-PLSF 299
Query: 266 GIAIYERCPRPVEPLWVE 283
+ E P L VE
Sbjct: 300 VDTVLELVPAEHLNLVVE 317
>d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus
subtilis [TaxId: 1423]}
Length = 318
Score = 55.2 bits (131), Expect = 2e-09
Identities = 40/274 (14%), Positives = 78/274 (28%), Gaps = 23/274 (8%)
Query: 23 SKVAFLPPESTYSFTPTESGSSTYHVQFNDKAEWQYGDNERSNIEGFFTRTSRGNRLACM 82
++A + E P + + V + ++ N R I G++ + +
Sbjct: 33 EELAKVQAE--PDLQPVDYPADGVKVY---RLTYKSFGNAR--ITGWYAVPDKEGPHPAI 85
Query: 83 FMKC-------SPNARFTILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGY 135
HG A G + +I + ++ +
Sbjct: 86 VKYHGYNASYDGEIHEMVNWALHGYAT----FGMLVRGQQRSEDTSISPHGHALGWMTKG 141
Query: 136 GISTGRPSEKNLYADIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLASRY-QVGAVI 194
+ + +Y D A + + + I + G S G TI A+ A +
Sbjct: 142 ILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAV 201
Query: 195 LHSPLMSGMRVAFPRTKRTWFFDVFPRVI----FANVKTPIMGLSTLENIDKVPKVTSPV 250
P +S A + ++ + LS + ++ +V PV
Sbjct: 202 ADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPV 261
Query: 251 LVIHGTEDEVIDLSHGIAIYERCPRPVEPLWVEG 284
L+ G D+V S A Y E
Sbjct: 262 LMSIGLIDKVTPPSTVFAAYNHLETKKELKVYRY 295
>d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus
thermophilus [TaxId: 274]}
Length = 238
Score = 42.5 bits (98), Expect = 2e-05
Identities = 24/209 (11%), Positives = 52/209 (24%), Gaps = 27/209 (12%)
Query: 89 NARFTILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTGR------P 142
+ +L HG + + G R + ++D + + +
Sbjct: 22 APKALLLALHGLQGSKEHILALLPGYAER-GFLLLAFDAPRHGEREGPPPSSKSPRYVEE 80
Query: 143 SEKNLYADIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLASRY-QVGAVILHSPLMS 201
+ + A + L G S+G L + + V+
Sbjct: 81 VYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGF 140
Query: 202 GMRVAFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVI 261
M++ + + A P+L +HG+ D ++
Sbjct: 141 PMKLPQGQVVEDPGVLALYQAPPATRGEAYG--------------GVPLLHLHGSRDHIV 186
Query: 262 DLSHGIAIYERC-----PRPVEPLWVEGL 285
L+ E + EG
Sbjct: 187 PLARMEKTLEALRPHYPEGRLARFVEEGA 215
>d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 283
Score = 38.7 bits (89), Expect = 4e-04
Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 12/171 (7%)
Query: 125 YDYSGYDYSGYGISTGRPSEKNLYADID--AAWNTLRTRYGISPENIILYGQSIGTVPTI 182
D+ GYG TG + L AD+D ++L G S G +
Sbjct: 89 RDFLAVPLPGYGTGTGTGTA-LLPADLDTALDAQARAILRAAGDAPVVLLGHSGGALLAH 147
Query: 183 DLASRY------QVGAVILHSPLMSGMRVAFPRTKRT---WFFDVFPRVIFANVKTPIMG 233
+LA R ++L P G + R F + +
Sbjct: 148 ELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGR 207
Query: 234 LSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVEPLWVEG 284
+ + + ++PVL++ +E P V G
Sbjct: 208 YARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRAHWDLPHTVADVPG 258
>d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis
[TaxId: 1423]}
Length = 186
Score = 37.7 bits (86), Expect = 6e-04
Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 19/137 (13%)
Query: 148 YADIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLASRYQVGAVILHSPLMSGMRVAF 207
++ +TL EN L S+G + Q+ A + L+SG +
Sbjct: 43 QPRLEDWLDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSL 102
Query: 208 PRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGI 267
P + F + VI +D+++ S
Sbjct: 103 PTLQMLDEFTQGSFDHQKI-----------------IESAKHRAVIASKDDQIVPFSFSK 145
Query: 268 AIYERCPRPVEPLWVEG 284
+ ++ V+
Sbjct: 146 DLAQQI--DAALYEVQH 160
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 37.0 bits (85), Expect = 0.002
Identities = 12/130 (9%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 161 RYGISPENIILYGQSIGTVPTIDLASRY----QVGAVILHSPLMSGMRVAFPRTKRTWFF 216
+ ++P ++ + G + G L Y VG + + A + + +
Sbjct: 5 AFNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGV-FAGGPYD--CARNQYYTSCMY 61
Query: 217 DVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYER---C 273
+ +P + + + ++ + + + + G+ D + + + +
Sbjct: 62 NGYPSITTPTANMKSWSGNQIASVANLGQR--KIYMWTGSSDTTVGPNVMNQLKAQLGNF 119
Query: 274 PRPVEPLWVE 283
+V
Sbjct: 120 DNSANVSYVT 129
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 36.2 bits (82), Expect = 0.003
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 242 KVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVEPLWVEG 284
+ + P+ V +G D + D + + P + +
Sbjct: 308 NLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPNLIYHRKIPP 350
>d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 218
Score = 36.0 bits (82), Expect = 0.003
Identities = 23/196 (11%), Positives = 51/196 (26%), Gaps = 15/196 (7%)
Query: 78 RLACMFMKCSPNARFTILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGI 137
RL + + + H + G M++ + + +++ G
Sbjct: 11 RLEGRYQPSKEKSAPIAIILHPHPQFGGTMNNQIVYQLFYL-FQKRGFTTLRFNFRSIGR 69
Query: 138 STGRPSEKNLYADIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLASR-YQVGAVILH 196
S G A+ ++ + G S G + L R ++ +
Sbjct: 70 SQGEFDHGAGELSDAASALDWVQSLHPDSKSCWVAGYSFGAWIGMQLLMRRPEIEGFMSI 129
Query: 197 SPLMSGMRVAFP-RTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVI-- 253
+P + +F + P ++ L K K
Sbjct: 130 APQPNTYDFSFLAPCPSSGLIINGDADKV----APEKDVNGLVEKLKTQKGILITHRTLP 185
Query: 254 ------HGTEDEVIDL 263
+G DE++
Sbjct: 186 GANHFFNGKVDELMGE 201
>d2rhwa1 c.69.1.10 (A:4-286)
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
(BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Length = 283
Score = 34.0 bits (76), Expect = 0.014
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 232 MGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPR 275
LST + ++ ++ + + G +D + L HG+ +
Sbjct: 208 APLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDD 251
>d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase
{Saccharopolyspora erythraea [TaxId: 1836]}
Length = 255
Score = 33.9 bits (77), Expect = 0.016
Identities = 30/199 (15%), Positives = 50/199 (25%), Gaps = 20/199 (10%)
Query: 94 ILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTGRPSEKNLYADIDA 153
I + A FT L G G P ++ A
Sbjct: 46 ICCAGTAA---ISGPHEFTRLAGA-----LRGIAPVRAVPQPGYEEGEPLPSSMAAVAAV 97
Query: 154 AWNTLRTRYGISPENIILYGQSIGTVPTIDLASRY-----QVGAVIL---HSPLMSGMRV 205
+ + G P ++ G S G + LA+ V+L + P
Sbjct: 98 QADAVIRTQGDKP--FVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMN 155
Query: 206 AFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVIDLSH 265
A+ FD + T + L + + P L++ E
Sbjct: 156 AWLEELTATLFDRETVRMDDTRLTALGAYDRLTGQWRPRETGLPTLLVSAGEPMGPWPDD 215
Query: 266 GIAIYERCPRPVEPLWVEG 284
P + + V G
Sbjct: 216 SWK--PTWPFEHDTVAVPG 232
>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 203
Score = 33.5 bits (75), Expect = 0.019
Identities = 21/134 (15%), Positives = 35/134 (26%), Gaps = 5/134 (3%)
Query: 93 TILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTGRPS--EKNLYAD 150
+ HG D Q F L + D S + + + TG +L
Sbjct: 19 LFVLLHGTGGDENQFFDFGARLLPQATILSPVGDVSEHGAARFFRRTGEGVYDMVDLERA 78
Query: 151 IDAAWNTLR-TRYGISPENIILYGQSIGTVPTIDLASRYQ--VGAVILHSPLMSGMRVAF 207
+ ++ R +I G S G ++ A +L PL+
Sbjct: 79 TGKMADFIKANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPKIS 138
Query: 208 PRTKRTWFFDVFPR 221
P
Sbjct: 139 PAKPTRRVLITAGE 152
>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter
autotrophicus [TaxId: 280]}
Length = 310
Score = 33.7 bits (75), Expect = 0.020
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 195 LHSPLMSGMRVAFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIH 254
L S FP T FP+++ + I ST +
Sbjct: 198 LTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDI-STEAISFWQNDWNGQTFMAI 256
Query: 255 GTEDEVIDLSHGIAIYERCPRPVEPLWVEG 284
G +D+++ + EPL +
Sbjct: 257 GMKDKLLGPDVMYPMKALINGCPEPLEIAD 286
>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC
{Streptomyces purpurascens [TaxId: 1924]}
Length = 297
Score = 33.3 bits (74), Expect = 0.026
Identities = 14/73 (19%), Positives = 21/73 (28%)
Query: 203 MRVAFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVID 262
A D V+ + L ++ +VT P LVI D +
Sbjct: 192 FDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAELREVTVPTLVIQAEHDPIAP 251
Query: 263 LSHGIAIYERCPR 275
HG + P
Sbjct: 252 APHGKHLAGLIPT 264
>d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas
campestris, pv. citri [TaxId: 339]}
Length = 313
Score = 33.2 bits (74), Expect = 0.030
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 203 MRVAFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDEVID 262
F F N + L + ++ + P +++HG D V
Sbjct: 213 FVTGHEDAHFALAFARIENHYFVNGGFFEVEDQLLRDAHRIADI--PGVIVHGRYDVVCP 270
Query: 263 LSHGIAIYERCPR 275
L +++ P+
Sbjct: 271 LQSAWDLHKAWPK 283
>d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens
[TaxId: 615]}
Length = 313
Score = 32.6 bits (72), Expect = 0.052
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 244 PKVTSPVLVIHGTEDEVIDLSHGIAIYERCPR 275
P +++HG D + + + + P
Sbjct: 251 LIRHIPAVIVHGRYDMACQVQNAWDLAKAWPE 282
>d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC
{Janthinobacterium sp. J3 [TaxId: 213804]}
Length = 268
Score = 31.7 bits (70), Expect = 0.079
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 243 VPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPR 275
+ KV P LV+ G +D+V+ + +
Sbjct: 204 IRKVQVPTLVVQGKDDKVVPVETAYKFLDLIDD 236
>d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 31.4 bits (69), Expect = 0.11
Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 180 PTIDLASRYQVGAVILHSPLMSGMRVAFPRTKRTWFFDVFPRVIFA---NVKTPIMGLST 236
+ + + G + ++SP + + ++ F + F N +
Sbjct: 189 SVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNMERNWK 248
Query: 237 LENIDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPR 275
K+ P L++ +D V+ + + P
Sbjct: 249 WACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIPH 287
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus
aculeatus) [TaxId: 5053]}
Length = 334
Score = 31.2 bits (70), Expect = 0.11
Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 15/153 (9%)
Query: 18 PSRIASKVAFLPPESTYSFTPTESGSSTYHVQFNDKAEWQYGDNERSNIEGFFTRTSRGN 77
PS ++ Y++T +T+ D G+ R+ + TS +
Sbjct: 95 PSGWSTTDLGTLKWQLYNYT--LEVCNTFAENDIDIEIISIGNEIRAGLLWPLGETSSYS 152
Query: 78 RLACMFMKCSPNAR-------FTILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGY 130
+ + + + I+ + Q + F+ + + +DY G
Sbjct: 153 NIGALLHSGAWGVKDSNLATTPKIMIHLDDGWSWDQQNYFYETVLATGELLSTDFDYFGV 212
Query: 131 DYSGYGISTGRPSEKNLYADIDAAWNTLRTRYG 163
S Y + + +L + L++ Y
Sbjct: 213 --SYYPFYSASATLASLK----TSLANLQSTYD 239
>d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp.
[TaxId: 1831]}
Length = 291
Score = 30.6 bits (67), Expect = 0.17
Identities = 13/76 (17%), Positives = 24/76 (31%)
Query: 200 MSGMRVAFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDE 259
M R F + FP I + + ++ + + P L+ GT
Sbjct: 183 MDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGV 242
Query: 260 VIDLSHGIAIYERCPR 275
+I + + E P
Sbjct: 243 LIPPAEAARLAESLPN 258
>d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 263
Score = 30.2 bits (66), Expect = 0.26
Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 40/231 (17%)
Query: 83 FMKCSPNARFTILFSHG--------NAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSG 134
F + S N R +++ HG D Q+++ + + +S +Y
Sbjct: 23 FQEISQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLS---- 78
Query: 135 YGISTGRPSEKNLYADIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLASRYQ----- 189
P N DA N R NI + G S+G + + +
Sbjct: 79 -------PEITNPRNLYDAVSNITRLVKEKGLTNINMVGHSVGATFIWQILAALKDPQEK 131
Query: 190 -VGAVILHSPLMSGMRVAFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTS 248
A + L+ ++ F ++ + T + ++ ++ P
Sbjct: 132 MSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVM 191
Query: 249 ------------PVLVIHGTEDEVIDLSHGIAIYERCPR---PVEPLWVEG 284
+ ++H DE++ L + + +
Sbjct: 192 PYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDL 242
>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase
PepX, middle domain {Lactococcus lactis [TaxId: 1358]}
Length = 405
Score = 29.5 bits (65), Expect = 0.46
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 240 IDKVPKVTSPVLVIHGTEDEVIDLSHGIAIYERCPRPVEP-LWV 282
+ KV + VL++HG +D + ++ P ++
Sbjct: 305 LINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPEGHAKHAFL 348
>d2qtpa1 d.79.9.1 (A:3-171) Uncharacterized protein SPO0826
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 169
Score = 28.1 bits (63), Expect = 0.86
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 163 GISPENIILYGQSIGTVPTIDLASRYQVGAVILHSPLMSGMRVAFPRTKRTWFFDVFPRV 222
GI PE YG+S + + A ILH L + +R A + +
Sbjct: 68 GIRPEQAESYGKSA----MVGENGELEHAAAILHPKLGAPLRKAVEKGA---------AL 114
Query: 223 IFANVKTPIMG 233
+ ++ K G
Sbjct: 115 VPSSKKMGSPG 125
>d1b24a1 d.95.2.1 (A:7-99) DNA endonuclease I-dmoI {Archaeon
Desulfurococcus mobilis [TaxId: 2274]}
Length = 93
Score = 26.4 bits (58), Expect = 1.3
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 41 SGSSTYHVQFNDKAEWQYGDNERSNIE 67
G + Y ++ + K + Y N I
Sbjct: 67 KGDTRYELRVSSKKLYYYFANMLERIR 93
>d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium
radiobacter [TaxId: 358]}
Length = 293
Score = 28.0 bits (60), Expect = 1.4
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 249 PVLVIHGTEDEVIDLSHGIAIYERCPRPVEPLWVEG 284
PV +I G D + + I + +E
Sbjct: 236 PVTMIWGLGDTCVPYAPLIEFVPKYYSNYTMETIED 271
>d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId:
1831]}
Length = 317
Score = 27.1 bits (58), Expect = 2.3
Identities = 32/212 (15%), Positives = 52/212 (24%), Gaps = 25/212 (11%)
Query: 94 ILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTGRPSEKNLYADIDA 153
+L+ HG IG S F+ Y + P N
Sbjct: 81 LLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPETT---FPGPVNDCYAALL 137
Query: 154 AWNTLRTRYGISPENIILYGQSIGTVPTIDLASR-----------YQVGAVILHSPLMSG 202
+ GI P I + GQS G + + L L +
Sbjct: 138 YIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETV 197
Query: 203 MRVAF------PRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGT 256
F R + + ++ + P + + + P +
Sbjct: 198 SMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTME 257
Query: 257 EDEVIDLSHGIAIYERCPR---PVEPLWVEGL 285
D + D GI R + VE G
Sbjct: 258 LDPLRD--EGIEYALRLLQAGVSVELHSFPGT 287
>d1k32a4 c.14.1.2 (A:680-762,A:854-1061) Tricorn protease {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 291
Score = 27.0 bits (59), Expect = 2.7
Identities = 9/66 (13%), Positives = 16/66 (24%)
Query: 72 RTSRGNRLACMFMKCSPNARFTILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDYSGYD 131
+ K + + G V I G F + +G+
Sbjct: 192 YAGSDGDIFSFSFKKLGLGKLIGTRTWGGVVGITPKRRLIDGTVLTQPEFAFWFRDAGFG 251
Query: 132 YSGYGI 137
YG+
Sbjct: 252 VENYGV 257
>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId:
1831]}
Length = 281
Score = 26.8 bits (57), Expect = 3.3
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 244 PKVTSPVLVIHGTEDEVIDLSHGIAIYERCPR 275
++ VLV HG +D ++ L + + +
Sbjct: 219 GRLPHDVLVFHGRQDRIVPLDTSLYLTKHLKH 250
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 135
Score = 26.2 bits (57), Expect = 3.4
Identities = 9/99 (9%), Positives = 17/99 (17%), Gaps = 6/99 (6%)
Query: 80 ACMFMKCSPNARFTILFSHGNAVDIGQMSSFFTGLGSRINCNIFSYDY---SGYDYSGYG 136
+ + A + TG S + S +
Sbjct: 17 VVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKGDSV 76
Query: 137 ISTGRPSEKNLYADIDAAWNTLRTRY---GISPENIILY 172
G W + G + +L
Sbjct: 77 ALMGEVEVVTDEKLKQELWQDWFIEHFPGGPTDPGYVLL 115
>d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 299
Score = 26.4 bits (57), Expect = 4.3
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 5/119 (4%)
Query: 145 KNLYADIDAAWNTLRTRYGISPENIILYGQSIGTVPTIDLASRYQVGAVILHSPLMSGMR 204
K L +D+ +N +N+ + G S+G I + G + +
Sbjct: 131 KELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYLKGYSGKRYKSCSAFAPIV 190
Query: 205 VAFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSP-VLVIHGTEDEVID 262
+ + K I + V +L+ G D ++
Sbjct: 191 ----NPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLE 245
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 196
Score = 25.5 bits (54), Expect = 5.9
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 136 GISTGRPSEKNLYADIDAAWNTLRTRYGISPENIILY 172
GI +E L D +L +++G+ ++
Sbjct: 1 GIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMF 37
>d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens
[TaxId: 294]}
Length = 218
Score = 25.8 bits (55), Expect = 6.1
Identities = 12/73 (16%), Positives = 24/73 (32%)
Query: 200 MSGMRVAFPRTKRTWFFDVFPRVIFANVKTPIMGLSTLENIDKVPKVTSPVLVIHGTEDE 259
++G T F + + + E + P L +HG D+
Sbjct: 110 LAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGDELELSASQQRIPALCLHGQYDD 169
Query: 260 VIDLSHGIAIYER 272
V+ + G + +E
Sbjct: 170 VVQNAMGRSAFEH 182
>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 393
Score = 26.0 bits (56), Expect = 6.3
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 127 YSGYDYSGYGISTGRPSEKNLYADIDAAWNTLR 159
Y+ + G P N D AW ++
Sbjct: 21 YTTRPKLPLTVVNGSPGFIN-LCDALNAWQLVK 52
>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 24.0 bits (52), Expect = 8.0
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 35 SFTPTESGSSTYHVQFNDK 53
+ PTE G ++++
Sbjct: 44 RYAPTEKGLHQMGIKYDGN 62
>d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm
(Tenebrio molitor), larva [TaxId: 7067]}
Length = 93
Score = 24.3 bits (53), Expect = 9.3
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 89 NARFTILFSHGN----AVDIGQ--MSSFFTGLGSRINCNIFSYDYSGYDYSGYGISTG 140
N I FS G+ A G + TGL + C++ S + SG +G ++ G
Sbjct: 10 NDDNQIAFSRGSQGFVAFTNGGDLNQNLNTGLPAGTYCDVISGELSGGSCTGKSVTVG 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.434
Gapped
Lambda K H
0.267 0.0370 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,109,999
Number of extensions: 50700
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 41
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.8 bits)